Origin IGS: ggagtcaacctgatctatgagttcggccttgcctttacctgtccttaaaattgtaagatattcattgagccatctgtatccggcaaaaagagtgctatccaataaatagagatttcctgaggcattgtctccggtggcgccaaaagaccatttgccggaactgttatctgcagtcaggatgagatgatcgccgggacagagaataatcttgcttttggggaagaattgattaccggcaaattgaatgcagacactccgcttgagagggatactgatcgttacttctccattctcgaaaaaaatgggtgttaccagtccggccagatcggaatcagcagagcatgggatatttgtccataaaaccccgctgcctccattctggggatttcgtaaagtcagcttcgttatgggatcgacctctttgtctatttgtggttttgctaatccttttattgtcaccataaaaaacacagcaacaagtgtcaaaaaaagagatggcttcatcataatacaacgtatttgtgttcttttttgaaagaaaaatgggatgcctatttctaatcaaaagtacagaaattccgaccggatataatccaattattacccacaaagtaaagatcggacagcattcgggctttacattttctgtaagcagtacttcggagagtagttctcgatcggtcgggacaggttctgccgattgctccgagccaacgacctgatgctccgcaagcggcggacaaccaatacctgacacgaggcctaccgatatgaagacctgctcaatacagagcctgaacctgtactcggaagtccgggaaagtacacatcacgactccctccctctgcgagggtttaggctccaaaaattgccggctttacagccatgaaaatgtggcgtgcaattttttacgttttggttcgggaggtaaaaaatttacgcgccaaaacgaaaaaattctcgtgcgtgttttcccgaaaacacgaaccgcaatcggcccgattccggcgcgattttttcatttagtcatttgaggtaggaggatgttttgcgcccatcggtgactgtctttggacaagggggcggcggtcaagtgtgtgcaaaaaattacctttggacaaagaaaccaaacagagcctcttggctcgcactcgaag .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 cttcgagtgcgagccaagaggctctgtttggtttctttgtccaaaggtaattttttgcacacacttgaccgccgcccccttgtccaaagacagtcaccgatgggcgcaaaacatcctcctacctcaaatgactaaatgaaaaaatcgcgccggaatcgggccgattgcggttcgtgttttcgggaaaacacgcacgagaattttttcgttttggcgcgtaaattttttacctcccgaaccaaaacgtaaaaaattgcacgccacattttcatggctgtaaagccggcaatttttggagcctaaaccctcgcagagggagggagtcgtgatgtgtactttcccggacttccgagtacaggttcaggctctgtattgagcaggtcttcatatcggtaggcctcgtgtcaggtattggttgtccgccgcttgcggagcatcaggtcgttggctcggagcaatcggcagaacctgtcccgaccgatcgagaactactctccgaagtactgcttacagaaaatgtaaagcccgaatgctgtccgatctttactttgtgggtaataattggattatatccggtcggaatttctgtacttttgattagaaataggcatcccatttttctttcaaaaaagaacacaaatacgttgtattatgatgaagccatctctttttttgacacttgttgctgtgttttttatggtgacaataaaaggattagcaaaaccacaaatagacaaagaggtcgatcccataacgaagctgactttacgaaatccccagaatggaggcagcggggttttatggacaaatatcccatgctctgctgattccgatctggccggactggtaacacccatttttttcgagaatggagaagtaacgatcagtatccctctcaagcggagtgtctgcattcaatttgccggtaatcaattcttccccaaaagcaagattattctctgtcccggcgatcatctcatcctgactgcagataacagttccggcaaatggtcttttggcgccaccggagacaatgcctcaggaaatctctatttattggatagcactctttttgccggatacagatggctcaatgaatatcttacaattttaaggacaggtaaaggcaaggccgaactcatagatcaggttgactcc Mask Tandem Repeat Region ================================================ ggagtcaacctgatctatgagttcggccttgcctttacctgtccttaaaattgtaagatattcattgagccatctgtatccggcaaaaagagtgctatccaataaatagagatttcctgaggcattgtctccggtggcgccaaaagaccatttgccggaactgttatctgcagtcaggatgagatgatcgccgggacagagaataatcttgcttttggggaagaattgattaccggcaaattgaatgcagacactccgcttgagagggatactgatcgttacttctccattctcgaaaaaaatgggtgttaccagtccggccagatcggaatcagcagagcatgggatatttgtccataaaaccccgctgcctccattctggggatttcgtaaagtcagcttcgttatgggatcgacctctttgtctatttgtggttttgctaatccttttattgtcaccataaaaaacacagcaacaagtgtcaaaaaaagagatggcttcatcataatacaacgtatttgtgttcttttttgaaagaaaaatgggatgcctatttctaatcaaaagtacagaaattccgaccggatataatccaattattacccacaaagtaaagatcggacagcattcgggctttacattttctgtaagcagtacttcggagagtagttctcgatcggtcgggacaggttctgccgattgctccgagccaacgacctgatgctccgcaagcggcggacaaccaatacctgacacgaggcctaccgatatgaagacctgctcaatacagagcctgaacctgtactcggaagtccgggaaagtacacatcacgactccctccctctgcgagggtttaggctccaaaaattgccggctttacagccatgaaaatgtggcgtgcaattttttacgttttggttcgggaggtaaaaaatttacgcgccaaaacgaaaaaattctcgtgcgtgttttcccgaaaacacgaaccgcaatcggcccgattccggcgcgattttttcatttagtcatttgaggtaggaggatgttttgcgcccatcggtgactgtctttggacaagggggcggcggtcaagtgtgtgcaaaaaattacctttggacaaagaaaccaaacagagcctcttggctcgcactcgaag Find is-nt database================================================ Query_seq: PG2042:PG2043|PG2042:PG2043:thioredoxin family protein:conserved hypothetical protein TIGR00486:<-->:2141200..2142357 1158 ggagtcaacctgatctatgagttcggccttgcctttacctgtccttaaaattgtaagatattcattgagccatctgtatccggcaaaaagagtgctatccaataaatagagatttcctgaggcattgtctccggtggcgccaaaagaccatttgccggaactgttatctgcagtcaggatgagatgatcgccgggacagagaataatcttgcttttggggaagaattgattaccggcaaattgaatgcagacactccgcttgagagggatactgatcgttacttctccattctcgaaaaaaatgggtgttaccagtccggccagatcggaatcagcagagcatgggatatttgtccataaaaccccgctgcctccattctggggatttcgtaaagtcagcttcgttatgggatcgacctctttgtctatttgtggttttgctaatccttttattgtcaccataaaaaacacagcaacaagtgtcaaaaaaagagatggcttcatcataatacaacgtatttgtgttcttttttgaaagaaaaatgggatgcctatttctaatcaaaagtacagaaattccgaccggatataatccaattattacccacaaagtaaagatcggacagcattcgggctttacattttctgtaagcagtacttcggagagtagttctcgatcggtcgggacaggttctgccgattgctccgagccaacgacctgatgctccgcaagcggcggacaaccaatacctgacacgaggcctaccgatatgaagacctgctcaatacagagcctgaacctgtactcggaagtccgggaaagtacacatcacgactccctccctctgcgagggtttaggctccaaaaattgccggctttacagccatgaaaatgtggcgtgcaattttttacgttttggttcgggaggtaaaaaatttacgcgccaaaacgaaaaaattctcgtgcgtgttttcccgaaaacacgaaccgcaatcggcccgattccggcgcgattttttcatttagtcatttgaggtaggaggatgttttgcgcccatcggtgactgtctttggacaagggggcggcggtcaagtgtgtgcaaaaaattacctttggacaaagaaaccaaacagagcctcttggctcgcactcgaag Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PG2042:PG2043|PG2042:PG2043:thioredoxin family protein:conserved hypothetical protein TIGR00486:<-->:2141200..2142357 1158 ggagtcaacctgatctatgagttcggccttgcctttacctgtccttaaaattgtaagatattcattgagccatctgtatccggcaaaaagagtgctatccaataaatagagatttcctgaggcattgtctccggtggcgccaaaagaccatttgccggaactgttatctgcagtcaggatgagatgatcgccgggacagagaataatcttgcttttggggaagaattgattaccggcaaattgaatgcagacactccgcttgagagggatactgatcgttacttctccattctcgaaaaaaatgggtgttaccagtccggccagatcggaatcagcagagcatgggatatttgtccataaaaccccgctgcctccattctggggatttcgtaaagtcagcttcgttatgggatcgacctctttgtctatttgtggttttgctaatccttttattgtcaccataaaaaacacagcaacaagtgtcaaaaaaagagatggcttcatcataatacaacgtatttgtgttcttttttgaaagaaaaatgggatgcctatttctaatcaaaagtacagaaattccgaccggatataatccaattattacccacaaagtaaagatcggacagcattcgggctttacattttctgtaagcagtacttcggagagtagttctcgatcggtcgggacaggttctgccgattgctccgagccaacgacctgatgctccgcaagcggcggacaaccaatacctgacacgaggcctaccgatatgaagacctgctcaatacagagcctgaacctgtactcggaagtccgggaaagtacacatcacgactccctccctctgcgagggtttaggctccaaaaattgccggctttacagccatgaaaatgtggcgtgcaattttttacgttttggttcgggaggtaaaaaatttacgcgccaaaacgaaaaaattctcgtgcgtgttttcccgaaaacacgaaccgcaatcggcccgattccggcgcgattttttcatttagtcatttgaggtaggaggatgttttgcgcccatcggtgactgtctttggacaagggggcggcggtcaagtgtgtgcaaaaaattacctttggacaaagaaaccaaacagagcctcttggctcgcactcgaag Intra-Species Hit: Count: 0 Inter-species Hit: Count: 13 Min: 635 Max: 823 Len: 189 Subject: gi|34539888|ref|NP_904367.1| ISPg5 transposase Orf2 [Porphyromonas gingivalis W83] HSP 1 e-value: 3.0E-15 bit: 79.7 Len: 189 Query Start:635 Query End:823 Subject Strand: null Subject Start: 50 Subject End: 116 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... L Y I F C K Q Y F G E * F S I G R D R F C R L L R A N D L M L R K R - - - - R T T N T * H E A Y R Y E D L L N T E P E P V L G S P G K ............................................................................................................................................................................................................................................................................................................................................... .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... L M V L C Q Q Y F G P K F T L G R D R F C A L L R R H G M M L R K R S V R P R T T N S R H R L Y K Y E D L L N T E P K F V P Q R P G E ............................................................................................................................................................................................................................................................................................................................................... Subject: gi|34539915|ref|NP_904394.1| ISPg5 transposase Orf2 [Porphyromonas gingivalis W83] HSP 1 e-value: 3.0E-15 bit: 79.7 Len: 189 Query Start:635 Query End:823 Subject Strand: null Subject Start: 50 Subject End: 116 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... L Y I F C K Q Y F G E * F S I G R D R F C R L L R A N D L M L R K R - - - - R T T N T * H E A Y R Y E D L L N T E P E P V L G S P G K ............................................................................................................................................................................................................................................................................................................................................... .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... L M V L C Q Q Y F G P K F T L G R D R F C A L L R R H G M M L R K R S V R P R T T N S R H R L Y K Y E D L L N T E P K F V P Q R P G E ............................................................................................................................................................................................................................................................................................................................................... Subject: gi|34540248|ref|NP_904727.1| ISPg5, transposase Orf2 [Porphyromonas gingivalis W83] HSP 1 e-value: 3.0E-15 bit: 79.7 Len: 189 Query Start:635 Query End:823 Subject Strand: null Subject Start: 50 Subject End: 116 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... L Y I F C K Q Y F G E * F S I G R D R F C R L L R A N D L M L R K R - - - - R T T N T * H E A Y R Y E D L L N T E P E P V L G S P G K ............................................................................................................................................................................................................................................................................................................................................... .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... L M V L C Q Q Y F G P K F T L G R D R F C A L L R R H G M M L R K R S V R P R T T N S R H R L Y K Y E D L L N T E P K F V P Q R P G E ............................................................................................................................................................................................................................................................................................................................................... Subject: gi|34540277|ref|NP_904756.1| ISPg5, transposase Orf2 [Porphyromonas gingivalis W83] HSP 1 e-value: 3.0E-15 bit: 79.7 Len: 189 Query Start:635 Query End:823 Subject Strand: null Subject Start: 50 Subject End: 116 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... L Y I F C K Q Y F G E * F S I G R D R F C R L L R A N D L M L R K R - - - - R T T N T * H E A Y R Y E D L L N T E P E P V L G S P G K ............................................................................................................................................................................................................................................................................................................................................... .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... L M V L C Q Q Y F G P K F T L G R D R F C A L L R R H G M M L R K R S V R P R T T N S R H R L Y K Y E D L L N T E P K F V P Q R P G E ............................................................................................................................................................................................................................................................................................................................................... Subject: gi|34540399|ref|NP_904878.1| ISPg5, transposase Orf2 [Porphyromonas gingivalis W83] HSP 1 e-value: 3.0E-15 bit: 79.7 Len: 189 Query Start:635 Query End:823 Subject Strand: null Subject Start: 50 Subject End: 116 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... L Y I F C K Q Y F G E * F S I G R D R F C R L L R A N D L M L R K R - - - - R T T N T * H E A Y R Y E D L L N T E P E P V L G S P G K ............................................................................................................................................................................................................................................................................................................................................... .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... L M V L C Q Q Y F G P K F T L G R D R F C A L L R R H G M M L R K R S V R P R T T N S R H R L Y K Y E D L L N T E P K F V P Q R P G E ............................................................................................................................................................................................................................................................................................................................................... Subject: gi|34541287|ref|NP_905766.1| ISPg5, transposase Orf2 [Porphyromonas gingivalis W83] HSP 1 e-value: 3.0E-15 bit: 79.7 Len: 189 Query Start:635 Query End:823 Subject Strand: null Subject Start: 50 Subject End: 116 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... L Y I F C K Q Y F G E * F S I G R D R F C R L L R A N D L M L R K R - - - - R T T N T * H E A Y R Y E D L L N T E P E P V L G S P G K ............................................................................................................................................................................................................................................................................................................................................... .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... L M V L C Q Q Y F G P K F T L G R D R F C A L L R R H G M M L R K R S V R P R T T N S R H R L Y K Y E D L L N T E P K F V P Q R P G E ............................................................................................................................................................................................................................................................................................................................................... Subject: gi|34541341|ref|NP_905820.1| ISPg5, transposase Orf2 [Porphyromonas gingivalis W83] HSP 1 e-value: 3.0E-15 bit: 79.7 Len: 189 Query Start:635 Query End:823 Subject Strand: null Subject Start: 50 Subject End: 116 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... L Y I F C K Q Y F G E * F S I G R D R F C R L L R A N D L M L R K R - - - - R T T N T * H E A Y R Y E D L L N T E P E P V L G S P G K ............................................................................................................................................................................................................................................................................................................................................... .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... L M V L C Q Q Y F G P K F T L G R D R F C A L L R R H G M M L R K R S V R P R T T N S R H R L Y K Y E D L L N T E P K F V P Q R P G E ............................................................................................................................................................................................................................................................................................................................................... Subject: gi|34541641|ref|NP_906120.1| ISPg5, transposase Orf2 [Porphyromonas gingivalis W83] HSP 1 e-value: 3.0E-15 bit: 79.7 Len: 189 Query Start:635 Query End:823 Subject Strand: null Subject Start: 50 Subject End: 116 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... L Y I F C K Q Y F G E * F S I G R D R F C R L L R A N D L M L R K R - - - - R T T N T * H E A Y R Y E D L L N T E P E P V L G S P G K ............................................................................................................................................................................................................................................................................................................................................... .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... L M V L C Q Q Y F G P K F T L G R D R F C A L L R R H G M M L R K R S V R P R T T N S R H R L Y K Y E D L L N T E P K F V P Q R P G E ............................................................................................................................................................................................................................................................................................................................................... Subject: gi|34541705|ref|NP_906184.1| ISPg5, transposase Orf2 [Porphyromonas gingivalis W83] HSP 1 e-value: 3.0E-15 bit: 79.7 Len: 189 Query Start:635 Query End:823 Subject Strand: null Subject Start: 50 Subject End: 116 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... L Y I F C K Q Y F G E * F S I G R D R F C R L L R A N D L M L R K R - - - - R T T N T * H E A Y R Y E D L L N T E P E P V L G S P G K ............................................................................................................................................................................................................................................................................................................................................... .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... L M V L C Q Q Y F G P K F T L G R D R F C A L L R R H G M M L R K R S V R P R T T N S R H R L Y K Y E D L L N T E P K F V P Q R P G E ............................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_A0PA68 Cluster: Transposase Orf2; n=10; Porphyromonas gingivalis|Rep: Transposase Orf2 - Porphyromonas gingivalis (Bacteroides gingivalis) HSP 1 e-value: 3.0E-15 bit: 79.7 Len: 189 Query Start:635 Query End:823 Subject Strand: null Subject Start: 50 Subject End: 116 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... L Y I F C K Q Y F G E * F S I G R D R F C R L L R A N D L M L R K R - - - - R T T N T * H E A Y R Y E D L L N T E P E P V L G S P G K ............................................................................................................................................................................................................................................................................................................................................... .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... L M V L C Q Q Y F G P K F T L G R D R F C A L L R R H G M M L R K R S V R P R T T N S R H R L Y K Y E D L L N T E P K F V P Q R P G E ............................................................................................................................................................................................................................................................................................................................................... Subject: gi|34540696|ref|NP_905175.1| ISPg5, transposase Orf2 [Porphyromonas gingivalis W83] HSP 1 e-value: 9.0E-15 bit: 78.2 Len: 189 Query Start:635 Query End:823 Subject Strand: null Subject Start: 50 Subject End: 116 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... L Y I F C K Q Y F G E * F S I G R D R F C R L L R A N D L M L R K R - - - - R T T N T * H E A Y R Y E D L L N T E P E P V L G S P G K ............................................................................................................................................................................................................................................................................................................................................... .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... L M V L C Q Q Y F G P K F T L G R D R F C A L L R R H G M M L R K R S V R P Q T T N S R H R L Y K Y E D L L N T E P K F V P Q R P G E ............................................................................................................................................................................................................................................................................................................................................... Subject: gi|34541096|ref|NP_905575.1| ISPg5, transposase Orf2 [Porphyromonas gingivalis W83] HSP 1 e-value: 9.0E-15 bit: 78.2 Len: 189 Query Start:635 Query End:823 Subject Strand: null Subject Start: 50 Subject End: 116 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... L Y I F C K Q Y F G E * F S I G R D R F C R L L R A N D L M L R K R - - - - R T T N T * H E A Y R Y E D L L N T E P E P V L G S P G K ............................................................................................................................................................................................................................................................................................................................................... .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... L M V L C Q Q Y F G P K F T L G R D R F C A L L R R H G M M L R K R S V R P Q T T N S R H R L Y K Y E D L L N T E P K F V P Q R P G E ............................................................................................................................................................................................................................................................................................................................................... Subject: IS|ISPg5.aa2 HSP 1 e-value: 9.0E-15 bit: 78.2 Len: 189 Query Start:635 Query End:823 Subject Strand: null Subject Start: 50 Subject End: 116 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... L Y I F C K Q Y F G E * F S I G R D R F C R L L R A N D L M L R K R - - - - R T T N T * H E A Y R Y E D L L N T E P E P V L G S P G K ............................................................................................................................................................................................................................................................................................................................................... .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... L M V L C Q Q Y F G P K F T L G R D R F C A L L R R H G M M L R K R S V R P Q T T N S R H R L Y K Y E D L L N T E P K F V P Q R P G E ............................................................................................................................................................................................................................................................................................................................................... Find nr database================================================ Query_seq: PG2042:PG2043|PG2042:PG2043:thioredoxin family protein:conserved hypothetical protein TIGR00486:<-->:2141200..2142357 1158 ggagtcaacctgatctatgagttcggccttgcctttacctgtccttaaaattgtaagatattcattgagccatctgtatccggcaaaaagagtgctatccaataaatagagatttcctgaggcattgtctccggtggcgccaaaagaccatttgccggaactgttatctgcagtcaggatgagatgatcgccgggacagagaataatcttgcttttggggaagaattgattaccggcaaattgaatgcagacactccgcttgagagggatactgatcgttacttctccattctcgaaaaaaatgggtgttaccagtccggccagatcggaatcagcagagcatgggatatttgtccataaaaccccgctgcctccattctggggatttcgtaaagtcagcttcgttatgggatcgacctctttgtctatttgtggttttgctaatccttttattgtcaccataaaaaacacagcaacaagtgtcaaaaaaagagatggcttcatcataatacaacgtatttgtgttcttttttgaaagaaaaatgggatgcctatttctaatcaaaagtacagaaattccgaccggatataatccaattattacccacaaagtaaagatcggacagcattcgggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacacatcacgactccctccctctgcgagggtttaggctccaaaaattgccggctttacagccatgaaaatgtggcgtgcaattttttacgttttggttcgggaggtaaaaaatttacgcgccaaaacgaaaaaattctcgtgcgtgttttcccgaaaacacgaaccgcaatcggcccgattccggcgcgattttttcatttagtcatttgaggtaggaggatgttttgcgcccatcggtgactgtctttggacaagggggcggcggtcaagtgtgtgcaaaaaattacctttggacaaagaaaccaaacagagcctcttggctcgcactcgaag Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 ggagtcaacctgatctatgagttcggccttgcctttacctgtccttaaaattgtaagatattcattgagccatctgtatccggcaaaaagagtgctatccaataaatagagatttcctgaggcattgtctccggtggcgccaaaagaccatttgccggaactgttatctgcagtcaggatgagatgatcgccgggacagagaataatcttgcttttggggaagaattgattaccggcaaattgaatgcagacactccgcttgagagggatactgatcgttacttctccattctcgaaaaaaatgggtgttaccagtccggccagatcggaatcagcagagcatgggatatttgtccataaaaccccgctgcctccattctggggatttcgtaaagtcagcttcgttatgggatcgacctctttgtctatttgtggttttgctaatccttttattgtcaccataaaaaacacagcaacaagtgtcaaaaaaagagatggcttcatcataatacaacgtatttgtgttcttttttgaaagaaaaatgggatgcctatttctaatcaaaagtacagaaattccgaccggatataatccaattattacccacaaagtaaagatcggacagcattcgggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacacatcacgactccctccctctgcgagggtttaggctccaaaaattgccggctttacagccatgaaaatgtggcgtgcaattttttacgttttggttcgggaggtaaaaaatttacgcgccaaaacgaaaaaattctcgtgcgtgttttcccgaaaacacgaaccgcaatcggcccgattccggcgcgattttttcatttagtcatttgaggtaggaggatgttttgcgcccatcggtgactgtctttggacaagggggcggcggtcaagtgtgtgcaaaaaattacctttggacaaagaaaccaaacagagcctcttggctcgcactcgaag Predict ORF larger than 30AA ================================================ Protein_Len: 30 Strand: + Start: 17 End: 106 ................ M S S A L P L P V L K I V R Y S L S H L Y P A K R V L S N K ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 36 Strand: + Start: 72 End: 179 ....................................................................... M C I R Q K E C Y P I N R D F L R H C L R W R Q K T I C R N C Y L Q S G ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 124 End: 357 ........................................................................................................................... M V S G G A K R P F A G T V I C S Q D E M I A G T E N N L A F G E E L I T G K L N A D T P L E R D T D R Y F S I L E K N ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 52 Strand: + Start: 306 End: 461 ................................................................................................................................................................................................................................................................................................................. M L P V R P D R N Q Q S M G Y L S I K P R C L H S G D F V K S A S L W D R P L C L F V V L L I L L L S P ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 245 End: 532 .................................................................................................................................................................................................................................................... M Q T L R L R G I L I V T S P F S K K M G V T S P A R S E S A E H G I F V H K T P L P P F W G F R K V S F V M G S T S L .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 60 Strand: + Start: 522 End: 719 ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M F F F E R K M G C L F L I K S T E I P T G Y N P I I T H K V K I G Q H S G F T F S V S S T S E S S S R S V G T G S A D ....................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 47 Strand: + Start: 747 End: 887 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M P D T R P T D M K T C S I Q S L N L Y S E V R E S T H H D S L P L R G F R L Q K L P A L Q P ............................................................................................................................................................................................................................................................................... Protein_Len: 52 Strand: + Start: 869 End: 1024 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M A G F T A M K M W R A I F Y V L V R E V K N L R A K T K K F S C V F S R K H E P Q S A R F R R D F F I ...................................................................................................................................... Protein_Len: 60 Strand: + Start: 829 End: 1032 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ M T T P S L C E G L G S K N C R L Y S H E N V A C N F L R F G S G G K K F T R Q N E K I L V R V F P K T R T A I G P I P .............................................................................................................................. Protein_Len: 34 Strand: + Start: 936 End: 1037 ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M Y A P K R K N S R A C F P E N T N R N R P D S G A I F S F S H L R ......................................................................................................................... Protein_Len: 33 Strand: + Start: 1058 End: 1156 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M G D C L W T R G R R S S V C K K L P L D K E T K Q S L L A R T R .. Protein_Len: 36 Strand: + Start: 1050 End: 1157 ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M R P S V T V F G Q G G G G Q V C A K N Y L W T K K P N R A S W L A L E . Protein_Len: 31 Strand: + Start: 1066 End: 1158 ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M S L D K G A A V K C V Q K I T F G Q R N Q T E P L G S H S K Protein_Len: 42 Strand: - Start: 1027 End: 1152 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. D N S T P P H K A G M P S Q R Q V L P R R D L T H L F N G K S L S V L C L R K A R M ...... Protein_Len: 37 Strand: - Start: 913 End: 1023 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ T K T R S T F F K R A L V F F N E H T N E R F C S G C D A R N R R S K K M ....................................................................................................................................... Protein_Len: 41 Strand: - Start: 882 End: 1004 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. L W S F T A H L K K R K P E P P L F N V R W F S F I R T R T K G F V R V A I P G M .......................................................................................................................................................... Protein_Len: 35 Strand: - Start: 833 End: 937 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ S E R G R R P N L S W F N G A K C G H F H P T C N K V N Q N P L Y F M ............................................................................................................................................................................................................................. Protein_Len: 36 Strand: - Start: 640 End: 747 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M K Q L C Y K P S Y N E I P R S L N Q R N S R A L S R I S R L R R V V M ........................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 561 End: 770 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ I W N N G V F Y L D S L M R A K C K R Y A T S R L T T R S R D P C T R G I A G L W R G S A G C A A S L W Y R V R P R G M .................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 335 End: 787 .............................................................................................................................................................................................................................................................................................................................................. L T F I P C C E P K V N E T L L V E S L L E R D T P V P E A S Q E S G V V Q H E A L P P C G I G S V L G V S I F V Q E M ................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 42 Strand: - Start: 48 End: 173 ............................................... F Q L I N M S G D T D P L F L A I W Y I S I E Q P M T E P P A L L G N A P V T I Q M ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 1 End: 555 N Q P N R L T L K T I P D V E K D I Q P K A L G K I T V M F F V A V L T L F L S P K M M I C R I Q T R K Q F F F P I G M ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ggagtcaacctgatctatgagttcggccttgcctttacctgtccttaaaattgtaagatattcattgagccatctgtatccggcaaaaagagtgctatccaataaatagagatttcctgaggcattgtctccggtggcgccaaaagaccatttgccggaactgttatctgcagtcaggatgagatgatcgccgggacagagaataatcttgcttttggggaagaattgattaccggcaaattgaatgcagacactccgcttgagagggatactgatcgttacttctccattctcgaaaaaaatgggtgttaccagtccggccagatcggaatcagcagagcatgggatatttgtccataaaaccccgctgcctccattctggggatttcgtaaagtcagcttcgttatgggatcgacctctttgtctatttgtggttttgctaatccttttattgtcaccataaaaaacacagcaacaagtgtcaaaaaaagagatggcttcatcataatacaacgtatttgtgttcttttttgaaagaaaaatgggatgcctatttctaatcaaaagtacagaaattccgaccggatataatccaattattacccacaaagtaaagatcggacagcattcgggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacacatcacgactccctccctctgcgagggtttaggctccaaaaattgccggctttacagccatgaaaatgtggcgtgcaattttttacgttttggttcgggaggtaaaaaatttacgcgccaaaacgaaaaaattctcgtgcgtgttttcccgaaaacacgaaccgcaatcggcccgattccggcgcgattttttcatttagtcatttgaggtaggaggatgttttgcgcccatcggtgactgtctttggacaagggggcggcggtcaagtgtgtgcaaaaaattacctttggacaaagaaaccaaacagagcctcttggctcgcactcgaag Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: - Score: 87 Start: 458 End: 487 .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGACACTTGTTGCTGTGTTTTTTATGGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ ggagtcaacctgatctatgagttcggccttgcctttacctgtccttaaaattgtaagatattcattgagccatctgtatccggcaaaaagagtgctatccaataaatagagatttcctgaggcattgtctccggtggcgccaaaagaccatttgccggaactgttatctgcagtcaggatgagatgatcgccgggacagagaataatcttgcttttggggaagaattgattaccggcaaattgaatgcagacactccgcttgagagggatactgatcgttacttctccattctcgaaaaaaatgggtgttaccagtccggccagatcggaatcagcagagcatgggatatttgtccataaaaccccgctgcctccattctggggatttcgtaaagtcagcttcgttatgggatcgacctctttgtctatttgtggttttgctaatccttttattgtcaccataaaaaacacagcaacaagtgtcaaaaaaagagatggcttcatcataatacaacgtatttgtgttcttttttgaaagaaaaatgggatgcctatttctaatcaaaagtacagaaattccgaccggatataatccaattattacccacaaagtaaagatcggacagcattcgggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacacatcacgactccctccctctgcgagggtttaggctccaaaaattgccggctttacagccatgaaaatgtggcgtgcaattttttacgttttggttcgggaggtaaaaaatttacgcgccaaaacgaaaaaattctcgtgcgtgttttcccgaaaacacgaaccgcaatcggcccgattccggcgcgattttttcatttagtcatttgaggtaggaggatgttttgcgcccatcggtgactgtctttggacaagggggcggcggtcaagtgtgtgcaaaaaattacctttggacaaagaaaccaaacagagcctcttggctcgcactcgaag Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 51 HP_score: -4.6 Tail_Score: -3.31232 Start: 612 End: 640 Full_Region: ATTATTACCCACAAA GTAAAGATCGGA CAGCA TTCGGGCTTTAC ATTTTCTGTAAGCAG ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAGATCGGACAGCATTCGGGCTTTAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 72 HP_score: -9.1 Tail_Score: -3.59979 Start: 842 End: 854 Full_Region: ACATCACGACTCCCT CCCTC TGC GAGGG TTTAGGCTCCAAAAA .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCTCTGCGAGGG................................................................................................................................................................................................................................................................................................................ TransTerm Strand: - Conf: 75 HP_score: -9.5 Tail_Score: -3.63744 Start: 985 End: 1013 Full_Region: actaaatgaaaaaat cgcgccggaatcg ggc cgattgcggttcg tgttttcgggaaaac ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cgcgccggaatcgggccgattgcggttcg................................................................................................................................................. TransTerm Strand: - Conf: 75 HP_score: -9.7 Tail_Score: -3.53779 Start: 989 End: 1009 Full_Region: aatgaaaaaatcgcg ccggaatcg ggc cgattgcgg ttcgtgttttcggga ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ccggaatcgggccgattgcgg..................................................................................................................................................... TransTerm Strand: + Conf: 83 HP_score: -4.2 Tail_Score: -5.40004 Start: 995 End: 1014 Full_Region: AAACACGAACCGCAA TCGGCCCG ATT CCGGCGCGA TTTTTTCATTTAGTC ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGCCCGATTCCGGCGCGA................................................................................................................................................ Find igs database================================================ Query_seq: PG2042:PG2043|PG2042:PG2043:thioredoxin family protein:conserved hypothetical protein TIGR00486:<-->:2141200..2142357 1158 ggagtcaacctgatctatgagttcggccttgcctttacctgtccttaaaattgtaagatattcattgagccatctgtatccggcaaaaagagtgctatccaataaatagagatttcctgaggcattgtctccggtggcgccaaaagaccatttgccggaactgttatctgcagtcaggatgagatgatcgccgggacagagaataatcttgcttttggggaagaattgattaccggcaaattgaatgcagacactccgcttgagagggatactgatcgttacttctccattctcgaaaaaaatgggtgttaccagtccggccagatcggaatcagcagagcatgggatatttgtccataaaaccccgctgcctccattctggggatttcgtaaagtcagcttcgttatgggatcgacctctttgtctatttgtggttttgctaatccttttattgtcaccataaaaaacacagcaacaagtgtcaaaaaaagagatggcttcatcataatacaacgtatttgtgttcttttttgaaagaaaaatgggatgcctatttctaatcaaaagtacagaaattccgaccggatataatccaattattacccacaaagtaaagatcggacagcattcgggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacacatcacgactccctccctctgcgagggtttaggctccaaaaattgccggctttacagccatgaaaatgtggcgtgcaattttttacgttttggttcgggaggtaaaaaatttacgcgccaaaacgaaaaaattctcgtgcgtgttttcccgaaaacacgaaccgcaatcggcccgattccggcgcgattttttcatttagtcatttgaggtaggaggatgttttgcgcccatcggtgactgtctttggacaagggggcggcggtcaagtgtgtgcaaaaaattacctttggacaaagaaaccaaacagagcctcttggctcgcactcgaag Intra-Species Hit: Count: 1 Min: 1 Max: 1158 Len: 1158 Subject: NC_002950_PG2042_PG2043|thioredoxin family protein:conserved hypothetical protein TIGR00486|NEGATIVE:POSITIVE|[2141200,2142357]|1158 HSP 1 e-value: 0.0 bit: 1168.0 Len: 631 Query Start:1 Query End:631 Subject Strand: POSITIVE Subject Start: 1 Subject End: 631 ggagtcaacctgatctatgagttcggccttgcctttacctgtccttaaaattgtaagatattcattgagccatctgtatccggcaaaaagagtgctatccaataaatagagatttcctgaggcattgtctccggtggcgccaaaagaccatttgccggaactgttatctgcagtcaggatgagatgatcgccgggacagagaataatcttgcttttggggaagaattgattaccggcaaattgaatgcagacactccgcttgagagggatactgatcgttacttctccattctcgnnnnnnntgggtgttaccagtccggccagatcggaatcagcagagcatgggatatttgtccataaaaccccgctgcctccattctggggatttcgtaaagtcagcttcgttatgggatcgacctctttgtctatttgtggttttgctaatccttttattgtcaccataaaaaacacagcaacaagtgtcnnnnnnngagatggcttcatcataatacaacgtatttgtgttcttttttgaaagaaaaatgggatgcctatttctaatcaaaagtacagaaattccgaccggatataatccaattattacccacaaagtaaagatcggacagcattc............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ggagtcaacctgatctatgagttcggccttgcctttacctgtccttaaaattgtaagatattcattgagccatctgtatccggcaaaaagagtgctatccaataaatagagatttcctgaggcattgtctccggtggcgccaaaagaccatttgccggaactgttatctgcagtcaggatgagatgatcgccgggacagagaataatcttgcttttggggaagaattgattaccggcaaattgaatgcagacactccgcttgagagggatactgatcgttacttctccattctcgaaaaaaatgggtgttaccagtccggccagatcggaatcagcagagcatgggatatttgtccataaaaccccgctgcctccattctggggatttcgtaaagtcagcttcgttatgggatcgacctctttgtctatttgtggttttgctaatccttttattgtcaccataaaaaacacagcaacaagtgtcaaaaaaagagatggcttcatcataatacaacgtatttgtgttcttttttgaaagaaaaatgggatgcctatttctaatcaaaagtacagaaattccgaccggatataatccaattattacccacaaagtaaagatcggacagcattc............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 0.0 bit: 664.0 Len: 335 Query Start:824 Query End:1158 Subject Strand: POSITIVE Subject Start: 824 Subject End: 1158 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tacacatcacgactccctccctctgcgagggtttaggctccaaaaattgccggctttacagccatgaaaatgtggcgtgcaattttttacgttttggttcgggaggtaaaaaatttacgcgccaaaacgaaaaaattctcgtgcgtgttttcccgaaaacacgaaccgcaatcggcccgattccggcgcgattttttcatttagtcatttgaggtaggaggatgttttgcgcccatcggtgactgtctttggacaagggggcggcggtcaagtgtgtgcaaaaaattacctttggacaaagaaaccaaacagagcctcttggctcgcactcgaag .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tacacatcacgactccctccctctgcgagggtttaggctccaaaaattgccggctttacagccatgaaaatgtggcgtgcaattttttacgttttggttcgggaggtaaaaaatttacgcgccaaaacgaaaaaattctcgtgcgtgttttcccgaaaacacgaaccgcaatcggcccgattccggcgcgattttttcatttagtcatttgaggtaggaggatgttttgcgcccatcggtgactgtctttggacaagggggcggcggtcaagtgtgtgcaaaaaattacctttggacaaagaaaccaaacagagcctcttggctcgcactcgaag Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ GGAGUCAACCUGAUCUAUGAGUUCGGCCUUGCCUUUACCUGUCCUUAAAAUUGUAAGAUAUUCAUUGAGCCAUCUGUAUCCGGCAAAAAGAGUGCUAUCCAAUAAAUAGAGAUUUCCUGAGGCAUUGUCUCCGGUGGCGCCAAAAGACCAUUUGCCGGAACUGUUAUCUGCAGUCAGGAUGAGAUGAUCGCCGGGACAGAGAAUAAUCUUGCUUUUGGGGAAGAAUUGAUUACCGGCAAAUUGAAUGCAGACACUCCGCUUGAGAGGGAUACUGAUCGUUACUUCUCCAUUCUCGAAAAAAAUGGGUGUUACCAGUCCGGCCAGAUCGGAAUCAGCAGAGCAUGGGAUAUUUGUCCAUAAAACCCCGCUGCCUCCAUUCUGGGGAUUUCGUAAAGUCAGCUUCGUUAUGGGAUCGACCUCUUUGUCUAUUUGUGGUUUUGCUAAUCCUUUUAUUGUCACCAUAAAAAACACAGCAACAAGUGUCAAAAAAAGAGAUGGCUUCAUCAUAAUACAACGUAUUUGUGUUCUUUUUUGAAAGAAAAAUGGGAUGCCUAUUUCUAAUCAAAAGUACAGAAAUUCCGACCGGAUAUAAUCCAAUUAUUACCCACAAAGUAAAGAUCGGACAGCAUUCGGGCUUUACAUUUUCUGUAAGCAGUACUUCGGAGAGUAGUUCUCGAUCGGUCGGGACAGGUUCUGCCGAUUGCUCCGAGCCAACGACCUGAUGCUCCGCAAGCGGCGGACAACCAAUACCUGACACGAGGCCUACCGAUAUGAAGACCUGCUCAAUACAGAGCCUGAACCUGUACUCGGAAGUCCGGGAAAGUACACAUCACGACUCCCUCCCUCUGCGAGGGUUUAGGCUCCAAAAAUUGCCGGCUUUACAGCCAUGAAAAUGUGGCGUGCAAUUUUUUACGUUUUGGUUCGGGAGGUAAAAAAUUUACGCGCCAAAACGAAAAAAUUCUCGUGCGUGUUUUCCCGAAAACACGAACCGCAAUCGGCCCGAUUCCGGCGCGAUUUUUUCAUUUAGUCAUUUGAGGUAGGAGGAUGUUUUGCGCCCAUCGGUGACUGUCUUUGGACAAGGGGGCGGCGGUCAAGUGUGUGCAAAAAAUUACCUUUGGACAAAGAAACCAAACAGAGCCUCUUGGCUCGCACUCGAAG .((((....(((.....(((.((((..((.(((.....((.(((((((((..(((((((((((.........(((((.((((((.....(.((((((((..........((.....))(((((...))))).))))))))).......(((((.((.((.((((.....)))))).))...)))))...))))))))))))))).))))))))))))))))))....((((....(((.......))).(((((((...((((((((((....((........))))).))))))).......)))))))...)))).))).))..)))).))).)))....(((....((((((((.......(((((((((((..((..((((....((((((((..((((((...((((..(((......)))...(((((((...((((.(((((((.(((.(((....................))).))).))))).))))))...))))))).....(((...(((((.((((((((..((((..(((((...)))))))))..((...(((((((....(((((..((((...)))).....((((.......))))...))))).....(((((((.........(((((((((((..(((((..(.((((..((((....((((((...((((((((((.((((...((((((......))..)))).)))).)))))))..)))....)))))).))))..)))))....)))))..)))))...))))))))))))).)))))))..))....)))))))).)))))..)))......))))...)))))).....(((..........))))))))))).(((((......))))).(((.(((((((.(((((((((.((..((........))..)).))))))))))))))))....((.((((((((....)))))))).)).)))..(((((((((...(((((((..(((((.(((((....)))))....)))))....))))))).))))).).)))))))..))...)))))))))))..(((.(((..........))))))))))))))....)))....(((((....)))))..)))).... (-360.15) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ CUUCGAGUGCGAGCCAAGAGGCUCUGUUUGGUUUCUUUGUCCAAAGGUAAUUUUUUGCACACACUUGACCGCCGCCCCCUUGUCCAAAGACAGUCACCGAUGGGCGCAAAACAUCCUCCUACCUCAAAUGACUAAAUGAAAAAAUCGCGCCGGAAUCGGGCCGAUUGCGGUUCGUGUUUUCGGGAAAACACGCACGAGAAUUUUUUCGUUUUGGCGCGUAAAUUUUUUACCUCCCGAACCAAAACGUAAAAAAUUGCACGCCACAUUUUCAUGGCUGUAAAGCCGGCAAUUUUUGGAGCCUAAACCCUCGCAGAGGGAGGGAGUCGUGAUGUGUACUUUCCCGGACUUCCGAGUACAGGUUCAGGCUCUGUAUUGAGCAGGUCUUCAUAUCGGUAGGCCUCGUGUCAGGUAUUGGUUGUCCGCCGCUUGCGGAGCAUCAGGUCGUUGGCUCGGAGCAAUCGGCAGAACCUGUCCCGACCGAUCGAGAACUACUCUCCGAAGUACUGCUUACAGAAAAUGUAAAGCCCGAAUGCUGUCCGAUCUUUACUUUGUGGGUAAUAAUUGGAUUAUAUCCGGUCGGAAUUUCUGUACUUUUGAUUAGAAAUAGGCAUCCCAUUUUUCUUUCAAAAAAGAACACAAAUACGUUGUAUUAUGAUGAAGCCAUCUCUUUUUUUGACACUUGUUGCUGUGUUUUUUAUGGUGACAAUAAAAGGAUUAGCAAAACCACAAAUAGACAAAGAGGUCGAUCCCAUAACGAAGCUGACUUUACGAAAUCCCCAGAAUGGAGGCAGCGGGGUUUUAUGGACAAAUAUCCCAUGCUCUGCUGAUUCCGAUCUGGCCGGACUGGUAACACCCAUUUUUUUCGAGAAUGGAGAAGUAACGAUCAGUAUCCCUCUCAAGCGGAGUGUCUGCAUUCAAUUUGCCGGUAAUCAAUUCUUCCCCAAAAGCAAGAUUAUUCUCUGUCCCGGCGAUCAUCUCAUCCUGACUGCAGAUAACAGUUCCGGCAAAUGGUCUUUUGGCGCCACCGGAGACAAUGCCUCAGGAAAUCUCUAUUUAUUGGAUAGCACUCUUUUUGCCGGAUACAGAUGGCUCAAUGAAUAUCUUACAAUUUUAAGGACAGGUAAAGGCAAGGCCGAACUCAUAGAUCAGGUUGACUCC ....((((..(((((....))))).(((((((((...(((.((((((....)))))).))).........(((.....(((((((..(((((.((..(.(((((..(....((((....(((..(...................(((.((((((.((((((.....(((((.((((((((....)))))))).))...((((((((((((((((..((................))..)))))))).))))))))...))).((((((((..((((....))))..........(((((((...(((((.(...).)))))......(((.((((((....(((....))))))))).))).)))))))....(((((((..((((.....(((((..((((.(((.((.((.(((..((.((((.((((.((((..(.....)...))))...)))).)))).))))).)))).)))....))))..)))))....))))..)))))))..))))))))...)))))).....(((((((..(((((.....)))))..)))))))....))))))))).((((.(((.(((((....(((((..((....))...))))).....))))).))).))))..)..)))....)))).....((((((((.((((.......((((((..(((((((((....).))))))))..)))))).........)))).)))))))).)..)))))...((.((((((.((((....((((((((.(((((.(((((((((...((((.........))))))))))))).))))).)))))..)))..........((((((((...))))))))....)))).).))))).))........)..)).)))))..(((((....(((.((((((....(((......)))...))))))..(((((.(((((((........((((((..(((........((((((....((((........))))))))))....))).)))))).....(((((.....)))))........)))))))..))))).)))....)))))...............)))))))....))).)))))))))...............)))). (-350.68) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 977 140 91 231 182 NC_002950:PG2042|5end_thioredoxin_family_protein_2141109..2141339_NEGATIVE 641 957 913 171 127 NC_002950:PG2063|5end_hypothetical_protein_2160596..2160826_NEGATIVE 589 1010 961 151 102 NC_002950:PG1617|5end_hypothetical_protein_1697755..1697985_NEGATIVE 537 927 885 128 82 NC_002950:PG0132|5end_hypothetical_protein_152879..153109_POSITIVE 455 1088 1042 230 180 NC_002950:PG0706|5end_hypothetical_protein_760350..760580_POSITIVE 452 740 694 213 162 NC_002950:PG2107|5end_thiamine_biosynthesis_protein_ThiH_2216658..2216888_NEGATIVE 447 1014 974 48 1 NC_002950:PG1383|5end_amino_acid_exporter,_putative_1462669..1462899_POSITIVE 445 739 693 123 78 NC_002950:PG0326|5end_hypothetical_protein_360974..361204_NEGATIVE 444 740 694 47 1 NC_002950:PG1170|5end_SerB_family_protein_1249163..1249393_POSITIVE 434 990 941 155 106 NC_002950:PG0007|5end_hypothetical_protein_6913..7143_NEGATIVE 421 176 131 90 42 NC_002950:PG1009|5end_hypothetical_protein_1068495..1068725_NEGATIVE 421 1117 1071 104 53 NC_002950:PG0767|5end_4-alpha-glucanotransferase_820533..820763_NEGATIVE 411 1090 1041 103 30 NC_002950:PG0145|5end_hypothetical_protein_167831..168061_POSITIVE 409 717 674 219 175 NC_002950:PG2098|5end_hypothetical_protein_2206635..2206865_NEGATIVE 408 1090 1042 66 9 NC_002950:PG2022|5end_hypothetical_protein_2117399..2117629_NEGATIVE 407 1093 1053 71 22 NC_002950:PG1066|5end_butyrate-acetoacetate_CoA-transferase,_subunit_A_1133521..1133751_POSITIVE 407 737 697 197 159 NC_002950:PG0744|5end_RNA_methyltransferase,_TrmH_family_791897..792127_NEGATIVE 407 737 692 141 98 NC_002950:PG0657|5end_Maf-like_protein_707782..708012_NEGATIVE 407 350 303 185 134 NC_002950:PG0294|5end_glycosyl_transferase,_group_2_family_protein_330161..330391_NEGATIVE 404 1102 1066 225 189 NC_002950:PG1095|5end_RNA_methyltransferase,_TrmA_family_1160225..1160455_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 541 967 922 48 2 NC_002950:PG0542|3end_hypothetical_protein_595377..595527_NEGATIVE 495 740 694 72 19 NC_002950:PG0334|3end_glycosyl_transferase,_group_2_family_protein_368792..368942_NEGATIVE 469 1014 971 46 3 NC_002950:PG1943|3end_hypothetical_protein_2028974..2029124_NEGATIVE 453 967 924 83 40 NC_002950:PG0732|3end_hypothetical_protein_783018..783168_POSITIVE 428 716 673 141 80 NC_002950:PG0498|3end_S-ribosylhomocysteinase_538527..538677_POSITIVE 421 176 131 76 28 NC_002950:PG1010|3end_ABC_transporter,_ATP-binding_protein_1068509..1068659_NEGATIVE 409 739 695 138 82 NC_002950:PG0555|3end_DNA-binding_protein,_histone-like_family_611716..611866_NEGATIVE 407 737 697 112 74 NC_002950:PG0745|3end_lactoylglutathione_lyase,_putative_791982..792132_NEGATIVE 407 737 692 125 82 NC_002950:PG0658|3end_phosphatase,_YrbI_family_707798..707948_NEGATIVE 404 1102 1066 141 105 NC_002950:PG1094|3end_phosphomannomutase_1160221..1160371_POSITIVE 403 737 693 88 46 NC_002950:PG1942|3end_30S_ribosomal_protein_S12_2027946..2028096_NEGATIVE 397 739 691 52 5 NC_002950:PG0715|3end_transporter_768676..768826_NEGATIVE 393 1090 1044 143 86 NC_002950:PG0520|3end_chaperonin_GroEL_563618..563768_NEGATIVE 389 710 661 102 39 NC_002950:PG0380|3end_excinuclease_ABC_subunit_B_411218..411368_POSITIVE 388 1090 1047 79 34 NC_002950:PG0332|3end_transcription_termination_factor_Rho_367675..367825_POSITIVE 385 712 672 148 97 NC_002950:PG0610|3end_hypothetical_protein_663604..663754_NEGATIVE 383 710 661 73 23 NC_002950:PG0534|3end_hypothetical_protein_585805..585955_POSITIVE 383 420 376 71 24 NC_002950:PG0272|3end_CBS_domain_protein_305738..305888_POSITIVE 383 196 154 131 77 NC_002950:PG0046|3end_phosphatidate_cytidylyltransferase_56346..56496_NEGATIVE 382 666 625 63 9 NC_002950:PG0869|3end_mobilization_protein_931850..932000_NEGATIVE