Origin IGS: agagtacgggtttcttcgttcctcggatatacaagggggctgtgtcaaaatccgaaaaaaggattttccaactatcaaaaagacacaaatgccaccttaatcataaaggaaaaaccgctatcaagtaggatgattttgtccatttggtagcggttttcctatacaaatgatagtatcctttactctaaactgaattttgacacttcctcttttacgaaccggaatcatcgaaaattccgggccacgttttccggaaaacacgcgcgacttttttttcgctttggcgcgagaattattttcttcccgaaccaaaacgaaaattttctcgagccacgtttttaggaacgcataacaggaaaattttggaaccaaaagaatatcggggcagccacctactgttccgagaatttcttttgcgataaagaggaattatccggaagcggactataatacatcgatatggacgtaaaggactgtcgctttagagagaagactttgcgaatcaatcgattatgatttgtgccacaatcatattagcagtctcaatcggtttttttgtaagtttggaacatgtataaaagagcattgtttttgctgtttttgtcgggtgtgcagctcttgatc .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 gatcaagagctgcacacccgacaaaaacagcaaaaacaatgctcttttatacatgttccaaacttacaaaaaaaccgattgagactgctaatatgattgtggcacaaatcataatcgattgattcgcaaagtcttctctctaaagcgacagtcctttacgtccatatcgatgtattatagtccgcttccggataattcctctttatcgcaaaagaaattctcggaacagtaggtggctgccccgatattcttttggttccaaaattttcctgttatgcgttcctaaaaacgtggctcgagaaaattttcgttttggttcgggaagaaaataattctcgcgccaaagcgaaaaaaaagtcgcgcgtgttttccggaaaacgtggcccggaattttcgatgattccggttcgtaaaagaggaagtgtcaaaattcagtttagagtaaaggatactatcatttgtataggaaaaccgctaccaaatggacaaaatcatcctacttgatagcggtttttcctttatgattaaggtggcatttgtgtctttttgatagttggaaaatccttttttcggattttgacacagcccccttgtatatccgaggaacgaagaaacccgtactct Mask Tandem Repeat Region ================================================ agagtacgggtttcttcgttcctcggatatacaagggggctgtgtcaaaatccgaaaaaaggattttccaactatcaaaaagacacaaatgccaccttaatcataaaggaaaaaccgctatcaagtaggatgattttgtccatttggtagcggttttcctatacaaatgatagtatcctttactctaaactgaattttgacacttcctcttttacgaaccggaatcatcgaaaattccgggccacgttttccggaaaacacgcgcgacttttttttcgctttggcgcgagaattattttcttcccgaaccaaaacgaaaattttctcgagccacgtttttaggaacgcataacaggaaaattttggaaccaaaagaatatcggggcagccacctactgttccgagaatttcttttgcgataaagaggaattatccggaagcggactataatacatcgatatggacgtaaaggactgtcgctttagagagaagactttgcgaatcaatcgattatgatttgtgccacaatcatattagcagtctcaatcggtttttttgtaagtttggaacatgtataaaagagcattgtttttgctgtttttgtcgggtgtgcagctcttgatc Find is-nt database================================================ Query_seq: PG2029:PG2030|PG2029:PG2030:hypothetical protein:hypothetical protein:->->:2129263..2129886 624 agagtacgggtttcttcgttcctcggatatacaagggggctgtgtcaaaatccgaaaaaaggattttccaactatcaaaaagacacaaatgccaccttaatcataaaggaaaaaccgctatcaagtaggatgattttgtccatttggtagcggttttcctatacaaatgatagtatcctttactctaaactgaattttgacacttcctcttttacgaaccggaatcatcgaaaattccgggccacgttttccggaaaacacgcgcgacttttttttcgctttggcgcgagaattattttcttcccgaaccaaaacgaaaattttctcgagccacgtttttaggaacgcataacaggaaaattttggaaccaaaagaatatcggggcagccacctactgttccgagaatttcttttgcgataaagaggaattatccggaagcggactataatacatcgatatggacgtaaaggactgtcgctttagagagaagactttgcgaatcaatcgattatgatttgtgccacaatcatattagcagtctcaatcggtttttttgtaagtttggaacatgtataaaagagcattgtttttgctgtttttgtcgggtgtgcagctcttgatc Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PG2029:PG2030|PG2029:PG2030:hypothetical protein:hypothetical protein:->->:2129263..2129886 624 agagtacgggtttcttcgttcctcggatatacaagggggctgtgtcaaaatccgaaaaaaggattttccaactatcaaaaagacacaaatgccaccttaatcataaaggaaaaaccgctatcaagtaggatgattttgtccatttggtagcggttttcctatacaaatgatagtatcctttactctaaactgaattttgacacttcctcttttacgaaccggaatcatcgaaaattccgggccacgttttccggaaaacacgcgcgacttttttttcgctttggcgcgagaattattttcttcccgaaccaaaacgaaaattttctcgagccacgtttttaggaacgcataacaggaaaattttggaaccaaaagaatatcggggcagccacctactgttccgagaatttcttttgcgataaagaggaattatccggaagcggactataatacatcgatatggacgtaaaggactgtcgctttagagagaagactttgcgaatcaatcgattatgatttgtgccacaatcatattagcagtctcaatcggtttttttgtaagtttggaacatgtataaaagagcattgtttttgctgtttttgtcgggtgtgcagctcttgatc Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PG2029:PG2030|PG2029:PG2030:hypothetical protein:hypothetical protein:->->:2129263..2129886 624 agagtacgggtttcttcgttcctcggatatacaagggggctgtgtcaaaatccgaaaaaaggattttccaactatcaaaaagacacaaatgccaccttaatcataaaggaaaaaccgctatcaagtaggatgattttgtccatttggtagcggttttcctatacaaatgatagtatcctttactctaaactgaattttgacacttcctcttttacgaaccggaatcatcgaaaattccgggccacgttttccggaaaacacgcgcgacttttttttcgctttggcgcgagaattattttcttcccgaaccaaaacgaaaattttctcgagccacgtttttaggaacgcataacaggaaaattttggaaccaaaagaatatcggggcagccacctactgttccgagaatttcttttgcgataaagaggaattatccggaagcggactataatacatcgatatggacgtaaaggactgtcgctttagagagaagactttgcgaatcaatcgattatgatttgtgccacaatcatattagcagtctcaatcggtttttttgtaagtttggaacatgtataaaagagcattgtttttgctgtttttgtcgggtgtgcagctcttgatc Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 agagtacgggtttcttcgttcctcggatatacaagggggctgtgtcaaaatccgaaaaaaggattttccaactatcaaaaagacacaaatgccaccttaatcataaaggaaaaaccgctatcaagtaggatgattttgtccatttggtagcggttttcctatacaaatgatagtatcctttactctaaactgaattttgacacttcctcttttacgaaccggaatcatcgaaaattccgggccacgttttccggaaaacacgcgcgacttttttttcgctttggcgcgagaattattttcttcccgaaccaaaacgaaaattttctcgagccacgtttttaggaacgcataacaggaaaattttggaaccaaaagaatatcggggcagccacctactgttccgagaatttcttttgcgataaagaggaattatccggaagcggactataatacatcgatatggacgtaaaggactgtcgctttagagagaagactttgcgaatcaatcgattatgatttgtgccacaatcatattagcagtctcaatcggtttttttgtaagtttggaacatgtataaaagagcattgtttttgctgtttttgtcgggtgtgcagctcttgatc Predict ORF larger than 30AA ================================================ Protein_Len: 33 Strand: + Start: 27 End: 125 .......................... M Y K G A V S K S E K R I F Q L S K R H K C H L N H K G K T A I K ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 36 Strand: + Start: 40 End: 147 ....................................... M C Q N P K K G F S N Y Q K D T N A T L I I K E K P L S S R M I L S I W ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 55 Strand: + Start: 175 End: 339 .............................................................................................................................................................................. M L Y S K L N F D T S S F T N R N H R K F R A T F S G K H A R L F F R F G A R I I F F P N Q N E N F L E P R F ............................................................................................................................................................................................................................................................................................. Protein_Len: 52 Strand: + Start: 194 End: 349 ................................................................................................................................................................................................. M L T L P L L R T G I I E N S G P R F P E N T R D F F F A L A R E L F S S R T K T K I F S S H V F R N A ................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 234 End: 419 ......................................................................................................................................................................................................................................... M P G H V F R K T R A T F F S L W R E N Y F L P E P K R K F S R A T F L G T H N R K I L E P K E Y R G S H L L F R E F L ............................................................................................................................................................................................................. Protein_Len: 33 Strand: + Start: 349 End: 447 ............................................................................................................................................................................................................................................................................................................................................................ M T G K F W N Q K N I G A A T Y C S E N F F C D K E E L S G S G L ................................................................................................................................................................................. Protein_Len: 30 Strand: + Start: 377 End: 466 ........................................................................................................................................................................................................................................................................................................................................................................................ M S G Q P P T V P R I S F A I K R N Y P E A D Y N T S I W T .............................................................................................................................................................. Protein_Len: 39 Strand: + Start: 506 End: 619 ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M D Y D L C H N H I S S L N R F F C K F G T C I K E H C F C C F C R V C S S * ..... Protein_Len: 37 Strand: - Start: 396 End: 506 ........................................................................................................................................................................................................................................................................................................................................................................................................... Q E S F K K Q S L S S N D P L P S Y Y M S I S T F S Q R K L S F V K R I M ...................................................................................................................... Protein_Len: 52 Strand: - Start: 296 End: 451 ....................................................................................................................................................................................................................................................................................................... K R G S G F R F N E R A V N K P V C L L F I K S G F S Y R P L W R S N R S N R K R Y L P I I R F R V I M ............................................................................................................................................................................. Protein_Len: 60 Strand: - Start: 124 End: 420 ........................................................................................................................... G R K G S F V R S K K K A K A R S N N E E R V L V F I K E L W T K L F A Y C S F K P V L L I D P C G G V T G L I E K A M ............................................................................................................................................................................................................ Protein_Len: 30 Strand: - Start: 1 End: 90 S Y P N R R E E S I C P P Q T L I R F F S K G V I L F V C M ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... agagtacgggtttcttcgttcctcggatatacaagggggctgtgtcaaaatccgaaaaaaggattttccaactatcaaaaagacacaaatgccaccttaatcataaaggaaaaaccgctatcaagtaggatgattttgtccatttggtagcggttttcctatacaaatgatagtatcctttactctaaactgaattttgacacttcctcttttacgaaccggaatcatcgaaaattccgggccacgttttccggaaaacacgcgcgacttttttttcgctttggcgcgagaattattttcttcccgaaccaaaacgaaaattttctcgagccacgtttttaggaacgcataacaggaaaattttggaaccaaaagaatatcggggcagccacctactgttccgagaatttcttttgcgataaagaggaattatccggaagcggactataatacatcgatatggacgtaaaggactgtcgctttagagagaagactttgcgaatcaatcgattatgatttgtgccacaatcatattagcagtctcaatcggtttttttgtaagtttggaacatgtataaaagagcattgtttttgctgtttttgtcgggtgtgcagctcttgatc Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ agagtacgggtttcttcgttcctcggatatacaagggggctgtgtcaaaatccgaaaaaaggattttccaactatcaaaaagacacaaatgccaccttaatcataaaggaaaaaccgctatcaagtaggatgattttgtccatttggtagcggttttcctatacaaatgatagtatcctttactctaaactgaattttgacacttcctcttttacgaaccggaatcatcgaaaattccgggccacgttttccggaaaacacgcgcgacttttttttcgctttggcgcgagaattattttcttcccgaaccaaaacgaaaattttctcgagccacgtttttaggaacgcataacaggaaaattttggaaccaaaagaatatcggggcagccacctactgttccgagaatttcttttgcgataaagaggaattatccggaagcggactataatacatcgatatggacgtaaaggactgtcgctttagagagaagactttgcgaatcaatcgattatgatttgtgccacaatcatattagcagtctcaatcggtttttttgtaagtttggaacatgtataaaagagcattgtttttgctgtttttgtcgggtgtgcagctcttgatc Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 61 HP_score: -4.7 Tail_Score: -4.0616 Start: 108 End: 159 Full_Region: actatcatttgtata ggaaaaccgctaccaaatgga caaaatca tcctacttgatagcggtttttcc tttatgattaaggtg ...........................................................................................................ggaaaaccgctaccaaatggacaaaatcatcctacttgatagcggtttttcc................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: - Conf: 61 HP_score: -7.1 Tail_Score: -3.03214 Start: 109 End: 159 Full_Region: actatcatttgtata ggaaaaccgctaccaaatgga caaaatca tcctacttgatagcggtttttc ctttatgattaaggt ............................................................................................................ggaaaaccgctaccaaatggacaaaatcatcctacttgatagcggtttttc................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: + Conf: 85 HP_score: -8.3 Tail_Score: -4.3467 Start: 115 End: 153 Full_Region: ATCATAAAGGAAAAA CCGCTATCAAGTAGGATG ATTT TGTCCATTTGGTAGCGG TTTTCCTATACAAAT ..................................................................................................................CCGCTATCAAGTAGGATGATTTTGTCCATTTGGTAGCGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 70 HP_score: -2.5 Tail_Score: -5.05505 Start: 115 End: 153 Full_Region: atttgtataggaaaa ccgctaccaaatgga caaaatca tcctacttgatagcgg tttttcctttatgat ..................................................................................................................ccgctaccaaatggacaaaatcatcctacttgatagcgg....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 60 HP_score: -6.6 Tail_Score: -3.14132 Start: 219 End: 240 Full_Region: tccggaaaacgtggc ccggaatt ttcgat gattccgg ttcgtaaaagaggaa ..........................................................................................................................................................................................................................ccggaattttcgatgattccgg................................................................................................................................................................................................................................................................................................................................................................................................ TransTerm Strand: + Conf: 64 HP_score: -4.2 Tail_Score: -4.36914 Start: 273 End: 320 Full_Region: ACACGCGCGACTTTT TTTTCGCTTTGGCGCGAGAA TTATTTTC TTCCCGAACCAAAACGAAAA TTTTCTCGAGCCACG ................................................................................................................................................................................................................................................................................TTTTCGCTTTGGCGCGAGAATTATTTTCTTCCCGAACCAAAACGAAAA................................................................................................................................................................................................................................................................................................................ TransTerm Strand: + Conf: 48 HP_score: -3.1 Tail_Score: -3.39506 Start: 378 End: 406 Full_Region: TTGGAACCAAAAGAA TATCGGGGCAG CCACCTA CTGTTCCGAGA ATTTCTTTTGCGATA .........................................................................................................................................................................................................................................................................................................................................................................................TATCGGGGCAGCCACCTACTGTTCCGAGA.......................................................................................................................................................................................................................... Find igs database================================================ Query_seq: PG2029:PG2030|PG2029:PG2030:hypothetical protein:hypothetical protein:->->:2129263..2129886 624 agagtacgggtttcttcgttcctcggatatacaagggggctgtgtcaaaatccgaaaaaaggattttccaactatcaaaaagacacaaatgccaccttaatcataaaggaaaaaccgctatcaagtaggatgattttgtccatttggtagcggttttcctatacaaatgatagtatcctttactctaaactgaattttgacacttcctcttttacgaaccggaatcatcgaaaattccgggccacgttttccggaaaacacgcgcgacttttttttcgctttggcgcgagaattattttcttcccgaaccaaaacgaaaattttctcgagccacgtttttaggaacgcataacaggaaaattttggaaccaaaagaatatcggggcagccacctactgttccgagaatttcttttgcgataaagaggaattatccggaagcggactataatacatcgatatggacgtaaaggactgtcgctttagagagaagactttgcgaatcaatcgattatgatttgtgccacaatcatattagcagtctcaatcggtttttttgtaagtttggaacatgtataaaagagcattgtttttgctgtttttgtcgggtgtgcagctcttgatc Intra-Species Hit: Count: 2 Min: 1 Max: 624 Len: 624 Subject: NC_002950_PG2029_PG2030|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2129263,2129886]|624 HSP 1 e-value: 0.0 bit: 1148.0 Len: 624 Query Start:1 Query End:624 Subject Strand: POSITIVE Subject Start: 1 Subject End: 624 agagtacgggtttcttcgttcctcggatatacaagggggctgtgtcaaaatccgaaaaaaggattttccaactatcaaaaagacacaaatgccaccttaatcataaaggaaaaaccgctatcaagtaggatgattttgtccatttggtagcggttttcctatacaaatgatagtatcctttactctaaactgaattttgacacttcctcttttacgaaccggaatcatcgaaaattccgggccacgttttccggaaaacacgcgcgacnnnnnnnncgctttggcgcgagaattattttcttcccgaaccaaaacgaaaattttctcgagccacgtttttaggaacgcataacaggaaaattttggaaccaaaagaatatcggggcagccacctactgttccgagaatttcttttgcgataaagaggaattatccggaagcggactataatacatcgatatggacgtaaaggactgtcgctttagagagaagactttgcgaatcaatcgattatgatttgtgccacaatcatattagcagtctcaatcggnnnnnnngtaagtttggaacatgtataaaagagcattgtttttgctgtttttgtcgggtgtgcagctcttgatc agagtacgggtttcttcgttcctcggatatacaagggggctgtgtcaaaatccgaaaaaaggattttccaactatcaaaaagacacaaatgccaccttaatcataaaggaaaaaccgctatcaagtaggatgattttgtccatttggtagcggttttcctatacaaatgatagtatcctttactctaaactgaattttgacacttcctcttttacgaaccggaatcatcgaaaattccgggccacgttttccggaaaacacgcgcgacttttttttcgctttggcgcgagaattattttcttcccgaaccaaaacgaaaattttctcgagccacgtttttaggaacgcataacaggaaaattttggaaccaaaagaatatcggggcagccacctactgttccgagaatttcttttgcgataaagaggaattatccggaagcggactataatacatcgatatggacgtaaaggactgtcgctttagagagaagactttgcgaatcaatcgattatgatttgtgccacaatcatattagcagtctcaatcggtttttttgtaagtttggaacatgtataaaagagcattgtttttgctgtttttgtcgggtgtgcagctcttgatc Subject: NC_002950_PG1214_PG1215|hypothetical protein:lipoprotein protein, putative|POSITIVE:POSITIVE|[1294411,1294760]|350 HSP 1 e-value: 2.0E-42 bit: 174.0 Len: 168 Query Start:36 Query End:203 Subject Strand: NEGATIVE Subject Start: 5 Subject End: 176 ...................................ggggctgtgtcaaaatccgaaaaaaggattttccaactatcaaaaagacacaaatgccaccttaatcataaaggaaaaaccgctatcaagtaggatgattttgtccatttggtagcggttttcctat---------acaaatgatagtatcctttactctaaactgaattttgacac..................................................................................................................................................................................................................................................................................................................................................................................................................................... ...................................ggggctgtgtcaaaatccgaaaat-ggattttccaac----aaaaagacacaaatgccaccttaatcatatcgggaaaaccgctatcaagtaggatgattttgtccttttggtagcggtttctctatacaaattatacaaatgatagtatcctttactctaaacggaattttgacac..................................................................................................................................................................................................................................................................................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AGAGUACGGGUUUCUUCGUUCCUCGGAUAUACAAGGGGGCUGUGUCAAAAUCCGAAAAAAGGAUUUUCCAACUAUCAAAAAGACACAAAUGCCACCUUAAUCAUAAAGGAAAAACCGCUAUCAAGUAGGAUGAUUUUGUCCAUUUGGUAGCGGUUUUCCUAUACAAAUGAUAGUAUCCUUUACUCUAAACUGAAUUUUGACACUUCCUCUUUUACGAACCGGAAUCAUCGAAAAUUCCGGGCCACGUUUUCCGGAAAACACGCGCGACUUUUUUUUCGCUUUGGCGCGAGAAUUAUUUUCUUCCCGAACCAAAACGAAAAUUUUCUCGAGCCACGUUUUUAGGAACGCAUAACAGGAAAAUUUUGGAACCAAAAGAAUAUCGGGGCAGCCACCUACUGUUCCGAGAAUUUCUUUUGCGAUAAAGAGGAAUUAUCCGGAAGCGGACUAUAAUACAUCGAUAUGGACGUAAAGGACUGUCGCUUUAGAGAGAAGACUUUGCGAAUCAAUCGAUUAUGAUUUGUGCCACAAUCAUAUUAGCAGUCUCAAUCGGUUUUUUUGUAAGUUUGGAACAUGUAUAAAAGAGCAUUGUUUUUGCUGUUUUUGUCGGGUGUGCAGCUCUUGAUC (((((.......(((((....(((........((((.((((((((((((((((.......)))))))..............))))))...))).))))........(((((((.((((((((((((.((((......)))))))))))))))))))))))........(((((..((((((((((((.(.(((..........(((((((((...(..(((((((........)))))))..)..((.((((.((((((....((((........))))..((((.((((((..((((((...............)))))).)))))).)))).)))))).)))).))....................(((((((((..(((((((((.......)))))))))....)))))))).)..)))))))))...((((....))))..........))).).)))).)))))))))))))......))).)))))....((((((((........))))))))(((((...((...((((((...((((..(((((((((((.((.....))...)))))))))))))))...))))))....))....))).)).)))))..... (-189.19) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ GAUCAAGAGCUGCACACCCGACAAAAACAGCAAAAACAAUGCUCUUUUAUACAUGUUCCAAACUUACAAAAAAACCGAUUGAGACUGCUAAUAUGAUUGUGGCACAAAUCAUAAUCGAUUGAUUCGCAAAGUCUUCUCUCUAAAGCGACAGUCCUUUACGUCCAUAUCGAUGUAUUAUAGUCCGCUUCCGGAUAAUUCCUCUUUAUCGCAAAAGAAAUUCUCGGAACAGUAGGUGGCUGCCCCGAUAUUCUUUUGGUUCCAAAAUUUUCCUGUUAUGCGUUCCUAAAAACGUGGCUCGAGAAAAUUUUCGUUUUGGUUCGGGAAGAAAAUAAUUCUCGCGCCAAAGCGAAAAAAAAGUCGCGCGUGUUUUCCGGAAAACGUGGCCCGGAAUUUUCGAUGAUUCCGGUUCGUAAAAGAGGAAGUGUCAAAAUUCAGUUUAGAGUAAAGGAUACUAUCAUUUGUAUAGGAAAACCGCUACCAAAUGGACAAAAUCAUCCUACUUGAUAGCGGUUUUUCCUUUAUGAUUAAGGUGGCAUUUGUGUCUUUUUGAUAGUUGGAAAAUCCUUUUUUCGGAUUUUGACACAGCCCCCUUGUAUAUCCGAGGAACGAAGAAACCCGUACUCU .....((((.(((..........((((.((((.......)))).)))).....((((((.................((..((((((((.(((.(((((((((......)))))))))....))).))..)))).))..))..(((((((.((....((((((......))))))..)).)).))))).((((((..((((((((....((((((((....((((..((((.....))))..))))..))))))))...(((...((((((.(.(((((((..((.....((.....))......(((((((((((((.((((((........)))))).)))))))))))))...))..)))))))....).))))))..))).((((((((......))))))))......)))))))).((((((((((((......(((.((((((((((((((.(..((.(((((((((((((.(((..(((........)))...))).)))))).))))))).))..).......((((....))))....)))))))......))))))).)))))))))))))))............)))))).)))))).........))))))) (-182.80) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 715 310 262 67 19 NC_002950:PG1799|5end_hypothetical_protein_1894499..1894729_POSITIVE 674 320 271 99 50 NC_002950:PG1980|5end_hypothetical_protein_2067930..2068160_NEGATIVE 613 350 301 91 44 NC_002950:PG2064|5end_hypothetical_protein_2160550..2160780_POSITIVE 542 320 273 192 145 NC_002950:PG0081|5end_hypothetical_protein_93805..94035_POSITIVE 498 347 301 124 80 NC_002950:PG0174|5end_pyridine_nucleotide-disulphide_oxidoreductase_family_protein_197628..197858_NEGATIVE 463 370 321 62 13 NC_002950:PG0524|5end_hypothetical_protein_568599..568829_POSITIVE 410 349 301 95 46 NC_002950:PG0313|5end_hypothetical_protein_347366..347596_POSITIVE 401 300 251 105 51 NC_002950:PG0007|5end_hypothetical_protein_6913..7143_NEGATIVE 399 288 241 71 23 NC_002950:PG1874|5end_hypothetical_protein_1969660..1969890_NEGATIVE 385 266 226 231 183 NC_002950:PG2127|5end_hypothetical_protein_2233552..2233782_NEGATIVE 385 299 251 224 168 NC_002950:PG0250|5end_hypothetical_protein_284081..284311_NEGATIVE 377 620 580 211 171 NC_002950:PG2021|5end_hypothetical_protein_2114852..2115082_NEGATIVE 372 280 238 202 160 NC_002950:PG0289|5end_hypothetical_protein_322860..323090_POSITIVE 368 370 327 64 21 NC_002950:PG1547|5end_hypothetical_protein_1624262..1624492_POSITIVE 364 286 241 178 137 NC_002950:PG1645|5end_ISPg5,_transposase_Orf1_1726062..1726292_NEGATIVE 358 265 226 130 89 NC_002950:PG1617|5end_hypothetical_protein_1697755..1697985_NEGATIVE 357 56 14 211 160 NC_002950:PG0749|5end_hypothetical_protein_795654..795884_NEGATIVE 353 290 242 61 3 NC_002950:PG1814|5end_DNA_primase_1910627..1910857_NEGATIVE 348 427 381 148 101 NC_002950:PG2101|5end_hypothetical_protein_2211273..2211503_NEGATIVE 348 45 1 166 115 NC_002950:PG0676|5end_oxidoreductase,_short_chain_dehydrogenase/reductase_family_727275..727505_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 603 190 143 73 17 NC_002950:PG1214|3end_hypothetical_protein_1294350..1294500_POSITIVE 446 329 281 52 1 NC_002950:PG1626|3end_hypothetical_protein_1710486..1710636_POSITIVE 431 287 241 141 82 NC_002950:PG0732|3end_hypothetical_protein_783018..783168_POSITIVE 401 287 244 50 5 NC_002950:PG1473|3end_conjugative_transposon_protein_TraQ_1549761..1549911_NEGATIVE 399 288 241 84 36 NC_002950:PG1875|3end_hemolysin_1969647..1969797_NEGATIVE 368 370 327 77 34 NC_002950:PG1546|3end_hypothetical_protein_1624355..1624505_POSITIVE 352 56 11 140 85 NC_002950:PG0610|3end_hypothetical_protein_663604..663754_NEGATIVE 343 405 364 105 52 NC_002950:PG1761|3end_acetyltransferase,_GNAT_family_1847739..1847889_POSITIVE 334 480 432 61 11 NC_002950:PG0963|3end_hypothetical_protein_1024087..1024237_NEGATIVE 329 429 381 126 68 NC_002950:PG0171|3end_5'-nucleotidase_family_protein_193576..193726_POSITIVE 326 42 10 138 98 NC_002950:PG1797|3end_DNA-binding_response_regulator/sensor_histidine_kinase_1892978..1893128_POSITIVE 315 430 381 73 22 NC_002950:PG1118|3end_clpB_protein_1192083..1192233_NEGATIVE 315 616 579 58 18 NC_002950:PG0593|3end_htrA_protein_651938..652088_POSITIVE 315 247 202 79 32 NC_002950:PG0534|3end_hypothetical_protein_585805..585955_POSITIVE 314 268 221 127 87 NC_002950:PG0603|3end_cytidylate_kinase_660345..660495_POSITIVE 313 54 14 60 16 NC_002950:PG0606|3end_hypothetical_protein_662451..662601_NEGATIVE 312 290 241 133 76 NC_002950:PG0229|3end_hypothetical_protein_265350..265500_POSITIVE 310 45 2 148 111 NC_002950:PG0155|3end_riboflavin_biosynthesis_protein_RibD_177861..178011_NEGATIVE 309 406 362 146 94 NC_002950:PG0228|3end_DdaH_family_protein_264024..264174_NEGATIVE 306 240 192 100 48 NC_002950:PG1655|3end_hypothetical_protein_1737384..1737534_POSITIVE