Origin IGS: aacgaaaaagttcccgcgccacgtttttcagagcgtggatagtcttctccaaagagtccgttatccacttttataagaccgctacacaactcgcttgtgcgtttggcatcctcgtagatgtgtgaatacgaaggaagttttgagttgtttgctgttgtttttctatcggttggactctccctttactccccattcggaggtttaagcctccgaatggggagatttttcgtctatttcacgccatagagcacagaagcccgggggcatgcgcttaagattgtaggccatcgcttccagaacactctgtgtatgcgttcgttctaaccctcggtaatcaatgtcttaatagccttacggactgtgtatgtatagtgagaacgtattactaaagcagaaaaacaagcatttgtgtcttaatagccttacagactgtgtatgtatagtgagaaaattaattgaacttataaaatgttcttaatctgtcttaatagccttacggactgtgtatgtatagtgagaattagactctccaattggataccaaacttatcaaagtcttaatagccttacggactgtgtatgtatagtgagtgcagggagttggttcagcaaaaaccccgctgtcgtcttaatagccttacggactgtgtatgtatagtgagattgaggaagaaggagtagaaaagccctatactcacaagtcttaatagccttacggactgtgtatgtatagtgagtcaaaaattgtaaaacttattaagtcatggcgaaacagtcttaatagccttacggactgtgtatgtatagtgagtccgatagaatgggtactttacctcatggtcagtgagtcttaatagccttacggactgtgtatgtatagtgagtacttgagcgactgcaagttacgaataatcccaaacgtaacgcattggcagagaacgattctatttttttcgaaaatacaagttgagaaatgcagctacaacactatttttgcagttgagttgattatatctcattgatatacaatgagatttcttgattttccgttttcgaaaataagaaagagggagccttcgttttttagattttcgaaaaatagagaaagacaccgtttgataatcaaacacttacaaatagcgaaaagcctctatttttcgaaaataaaagtcccaattctccttttctcctattttcgaaaaacaggagaaaagagttgttcttgcaaccgactgataatcaatacgtcaaagagcgatgtgaggttcgatttttttcgaaaaa .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 tttttcgaaaaaaatcgaacctcacatcgctctttgacgtattgattatcagtcggttgcaagaacaactcttttctcctgtttttcgaaaataggagaaaaggagaattgggacttttattttcgaaaaatagaggcttttcgctatttgtaagtgtttgattatcaaacggtgtctttctctatttttcgaaaatctaaaaaacgaaggctccctctttcttattttcgaaaacggaaaatcaagaaatctcattgtatatcaatgagatataatcaactcaactgcaaaaatagtgttgtagctgcatttctcaacttgtattttcgaaaaaaatagaatcgttctctgccaatgcgttacgtttgggattattcgtaacttgcagtcgctcaagtactcactatacatacacagtccgtaaggctattaagactcactgaccatgaggtaaagtacccattctatcggactcactatacatacacagtccgtaaggctattaagactgtttcgccatgacttaataagttttacaatttttgactcactatacatacacagtccgtaaggctattaagacttgtgagtatagggcttttctactccttcttcctcaatctcactatacatacacagtccgtaaggctattaagacgacagcggggtttttgctgaaccaactccctgcactcactatacatacacagtccgtaaggctattaagactttgataagtttggtatccaattggagagtctaattctcactatacatacacagtccgtaaggctattaagacagattaagaacattttataagttcaattaattttctcactatacatacacagtctgtaaggctattaagacacaaatgcttgtttttctgctttagtaatacgttctcactatacatacacagtccgtaaggctattaagacattgattaccgagggttagaacgaacgcatacacagagtgttctggaagcgatggcctacaatcttaagcgcatgcccccgggcttctgtgctctatggcgtgaaatagacgaaaaatctccccattcggaggcttaaacctccgaatggggagtaaagggagagtccaaccgatagaaaaacaacagcaaacaactcaaaacttccttcgtattcacacatctacgaggatgccaaacgcacaagcgagttgtgtagcggtcttataaaagtggataacggactctttggagaagactatccacgctctgaaaaacgtggcgcgggaactttttcgtt Mask Tandem Repeat Region ================================================ aacgaaaaagttcccgcgccacgtttttcagagcgtggatagtcttctccaaagagtccgttatccacttttataagaccgctacacaactcgcttgtgcgtttggcatcctcgtagatgtgtgaatacgaaggaagttttgagttgtttgctgttgtttttctatcggttggactctccctttactccccattcggaggtttaagcctccgaatggggagatttttcgtctatttcacgccatagagcacagaagcccgggggcatgcgcttaagattgtaggccatcgcttccagaacactctgtgtatgcgttcgttctaaccctcggtaatcaatgtcttaatagccttacggactgtgtatgtatagtgagaacgtattactaaagcagaaaaacaagcatttgtgtcttaatagccttacagactgtgtatgtatagtgagaaaattaattgaacttataaaatgttcttaatctgtcttaatagccttacggactgtgtatgtatagtgagaattagactctccaattggataccaaacttatcaaagtcttaatagccttacggactgtgtatgtatagtgagtgcagggagttggttcagcaaaaaccccgctgtcgtcttaatagccttacggactgtgtatgtatagtgagattgaggaagaaggagtagaaaagccctatactcacaagtcttaatagccttacggactgtgtatgtatagtgagtcaaaaattgtaaaacttattaagtcatggcgaaacagtcttaatagccttacggactgtgtatgtatagtgagtccgatagaatgggtactttacctcatggtcagtgagtcttaatagccttacggactgtgtatgtatagtgagtacttgagcgactgcaagttacgaataatcccaaacgtaacgcattggcagagaacgattctatttttttcgaaaatacaagttgagaaatgcagctacaacactatttttgcagttgagttgattatatctcattgatatacaatgagatttcttgattttccgttttcgaaaataagaaagagggagccttcgttttttagattttcgaaaaatagagaaagacaccgtttgataatcaaacacttacaaatagcgaaaagcctctatttttcgaaaataaaagtcccaattctccttttctcctattttcgaaaaacaggagaaaagagttgttcttgcaaccgactgataatcaatacgtcaaagagcgatgtgaggttcgatttttttcgaaaaa Find is-nt database================================================ Query_seq: PG1980:PG1981|PG1980:PG1981:hypothetical protein:CRISPR-associated protein Cas2:<-<-:2068021..2069304 1284 aacgaaaaagttcccgcgccacgtttttcagagcgtggatagtcttctccaaagagtccgttatccacttttataagaccgctacacaactcgcttgtgcgtttggcatcctcgtagatgtgtgaatacgaaggaagttttgagttgtttgctgttgtttttctatcggttggactctccctttactccccattcggaggtttaagcctccgaatggggagatttttcgtctatttcacgccatagagcacagaagcccgggggcatgcgcttaagattgtaggccatcgcttccagaacactctgtgtatgcgttcgttctaaccctcggtaatcaatgtcttaatagccttacggactgtgtatgtatagtgagaacgtattactaaagcagaaaaacaagcatttgtgtcttaatagccttacagactgtgtatgtatagtgagaaaattaattgaacttataaaatgttcttaatctgtcttaatagccttacggactgtgtatgtatagtgagaattagactctccaattggataccaaacttatcaaagtcttaatagccttacggactgtgtatgtatagtgagtgcagggagttggttcagcaaaaaccccgctgtcgtcttaatagccttacggactgtgtatgtatagtgagattgaggaagaaggagtagaaaagccctatactcacaagtcttaatagccttacggactgtgtatgtatagtgagtcaaaaattgtaaaacttattaagtcatggcgaaacagtcttaatagccttacggactgtgtatgtatagtgagtccgatagaatgggtactttacctcatggtcagtgagtcttaatagccttacggactgtgtatgtatagtgagtacttgagcgactgcaagttacgaataatcccaaacgtaacgcattggcagagaacgattctatttttttcgaaaatacaagttgagaaatgcagctacaacactatttttgcagttgagttgattatatctcattgatatacaatgagatttcttgattttccgttttcgaaaataagaaagagggagccttcgttttttagattttcgaaaaatagagaaagacaccgtttgataatcaaacacttacaaatagcgaaaagcctctatttttcgaaaataaaagtcccaattctccttttctcctattttcgaaaaacaggagaaaagagttgttcttgcaaccgactgataatcaatacgtcaaagagcgatgtgaggttcgatttttttcgaaaaa Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PG1980:PG1981|PG1980:PG1981:hypothetical protein:CRISPR-associated protein Cas2:<-<-:2068021..2069304 1284 aacgaaaaagttcccgcgccacgtttttcagagcgtggatagtcttctccaaagagtccgttatccacttttataagaccgctacacaactcgcttgtgcgtttggcatcctcgtagatgtgtgaatacgaaggaagttttgagttgtttgctgttgtttttctatcggttggactctccctttactccccattcggaggtttaagcctccgaatggggagatttttcgtctatttcacgccatagagcacagaagcccgggggcatgcgcttaagattgtaggccatcgcttccagaacactctgtgtatgcgttcgttctaaccctcggtaatcaatgtcttaatagccttacggactgtgtatgtatagtgagaacgtattactaaagcagaaaaacaagcatttgtgtcttaatagccttacagactgtgtatgtatagtgagaaaattaattgaacttataaaatgttcttaatctgtcttaatagccttacggactgtgtatgtatagtgagaattagactctccaattggataccaaacttatcaaagtcttaatagccttacggactgtgtatgtatagtgagtgcagggagttggttcagcaaaaaccccgctgtcgtcttaatagccttacggactgtgtatgtatagtgagattgaggaagaaggagtagaaaagccctatactcacaagtcttaatagccttacggactgtgtatgtatagtgagtcaaaaattgtaaaacttattaagtcatggcgaaacagtcttaatagccttacggactgtgtatgtatagtgagtccgatagaatgggtactttacctcatggtcagtgagtcttaatagccttacggactgtgtatgtatagtgagtacttgagcgactgcaagttacgaataatcccaaacgtaacgcattggcagagaacgattctatttttttcgaaaatacaagttgagaaatgcagctacaacactatttttgcagttgagttgattatatctcattgatatacaatgagatttcttgattttccgttttcgaaaataagaaagagggagccttcgttttttagattttcgaaaaatagagaaagacaccgtttgataatcaaacacttacaaatagcgaaaagcctctatttttcgaaaataaaagtcccaattctccttttctcctattttcgaaaaacaggagaaaagagttgttcttgcaaccgactgataatcaatacgtcaaagagcgatgtgaggttcgatttttttcgaaaaa Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PG1980:PG1981|PG1980:PG1981:hypothetical protein:CRISPR-associated protein Cas2:<-<-:2068021..2069304 1284 aacgaaaaagttcccgcgccacgtttttcagagcgtggatagtcttctccaaagagtccgttatccacttttataagaccgctacacaactcgcttgtgcgtttggcatcctcgtagatgtgtgaatacgaaggaagttttgagttgtttgctgttgtttttctatcggttggactctccctttactccccattcggaggtttaagcctccgaatggggagatttttcgtctatttcacgccatagagcacagaagcccgggggcatgcgcttaagattgtaggccatcgcttccagaacactctgtgtatgcgttcgttctaaccctcggtaatcaatgtcttaatagccttacggactgtgtatgtatagtgagaacgtattactaaagcagaaaaacaagcatttgtgtcttaatagccttacagactgtgtatgtatagtgagaaaattaattgaacttataaaatgttcttaatctgtcttaatagccttacggactgtgtatgtatagtgagaattagactctccaattggataccaaacttatcaaagtcttaatagccttacggactgtgtatgtatagtgagtgcagggagttggttcagcaaaaaccccgctgtcgtcttaatagccttacggactgtgtatgtatagtgagattgaggaagaaggagtagaaaagccctatactcacaagtcttaatagccttacggactgtgtatgtatagtgagtcaaaaattgtaaaacttattaagtcatggcgaaacagtcttaatagccttacggactgtgtatgtatagtgagtccgatagaatgggtactttacctcatggtcagtgagtcttaatagccttacggactgtgtatgtatagtgagtacttgagcgactgcaagttacgaataatcccaaacgtaacgcattggcagagaacgattctatttttttcgaaaatacaagttgagaaatgcagctacaacactatttttgcagttgagttgattatatctcattgatatacaatgagatttcttgattttccgttttcgaaaataagaaagagggagccttcgttttttagattttcgaaaaatagagaaagacaccgtttgataatcaaacacttacaaatagcgaaaagcctctatttttcgaaaataaaagtcccaattctccttttctcctattttcgaaaaacaggagaaaagagttgttcttgcaaccgactgataatcaatacgtcaaagagcgatgtgaggttcgatttttttcgaaaaa Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 aacgaaaaagttcccgcgccacgtttttcagagcgtggatagtcttctccaaagagtccgttatccacttttataagaccgctacacaactcgcttgtgcgtttggcatcctcgtagatgtgtgaatacgaaggaagttttgagttgtttgctgttgtttttctatcggttggactctccctttactccccattcggaggtttaagcctccgaatggggagatttttcgtctatttcacgccatagagcacagaagcccgggggcatgcgcttaagattgtaggccatcgcttccagaacactctgtgtatgcgttcgttctaaccctcggtaatcaatgtcttaatagccttacggactgtgtatgtatagtgagaacgtattactaaagcagaaaaacaagcatttgtgtcttaatagccttacagactgtgtatgtatagtgagaaaattaattgaacttataaaatgttcttaatctgtcttaatagccttacggactgtgtatgtatagtgagaattagactctccaattggataccaaacttatcaaagtcttaatagccttacggactgtgtatgtatagtgagtgcagggagttggttcagcaaaaaccccgctgtcgtcttaatagccttacggactgtgtatgtatagtgagattgaggaagaaggagtagaaaagccctatactcacaagtcttaatagccttacggactgtgtatgtatagtgagtcaaaaattgtaaaacttattaagtcatggcgaaacagtcttaatagccttacggactgtgtatgtatagtgagtccgatagaatgggtactttacctcatggtcagtgagtcttaatagccttacggactgtgtatgtatagtgagtacttgagcgactgcaagttacgaataatcccaaacgtaacgcattggcagagaacgattctatttttttcgaaaatacaagttgagaaatgcagctacaacactatttttgcagttgagttgattatatctcattgatatacaatgagatttcttgattttccgttttcgaaaataagaaagagggagccttcgttttttagattttcgaaaaatagagaaagacaccgtttgataatcaaacacttacaaatagcgaaaagcctctatttttcgaaaataaaagtcccaattctccttttctcctattttcgaaaaacaggagaaaagagttgttcttgcaaccgactgataatcaatacgtcaaagagcgatgtgaggttcgatttttttcgaaaaa Predict ORF larger than 30AA ================================================ Protein_Len: 36 Strand: + Start: 95 End: 202 .............................................................................................. M C V W H P R R C V N T K E V L S C L L L F F Y R L D S P F T P H S E V .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 42 Strand: + Start: 118 End: 243 ..................................................................................................................... M C E Y E G S F E L F A V V F L S V G L S L Y S P F G G L S L R M G R F F V Y F T P ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 36 Strand: + Start: 165 End: 272 .................................................................................................................................................................... M G W T L P L L P I R R F K P P N G E I F R L F H A I E H R S P G A C A .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 39 Strand: + Start: 359 End: 475 ...................................................................................................................................................................................................................................................................................................................................................................... M C M Y S E N V L L K Q K N K H L C L N S L T D C V C I V R K L I E L I K C S ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 30 Strand: + Start: 469 End: 558 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M F L I C L N S L T D C V C I V R I R L S N W I P N L S K S ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 41 Strand: + Start: 533 End: 655 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M G Y Q T Y Q S L N S L T D C V C I V S A G S W F S K N P A V V L I A L R T V Y V ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 35 Strand: + Start: 574 End: 678 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M C M Y S E C R E L V Q Q K P R C R L N S L T D C V C I V R L R K K E .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 44 Strand: + Start: 720 End: 851 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M C M Y S E S K I V K L I K S W R N S L N S L T D C V C I V S P I E W V L Y L M V S E S ................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 51 Strand: + Start: 867 End: 1019 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M C M Y S E Y L S D C K L R I I P N V T H W Q R T I L F F S K I Q V E K C S Y N T I F A V E L I I S H ......................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 1029 End: 1283 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M R F L D F P F S K I R K R E P S F F R F S K N R E R H R L I I K H L Q I A K S L Y F S K I K V P I L L F S Y F R K T G . Protein_Len: 37 Strand: - Start: 1134 End: 1244 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. L Y R F A E I K R F Y F D W N E K E G I K S F C S F L T T R A V S Q Y D M ........................................ Protein_Len: 40 Strand: - Start: 1019 End: 1138 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Q Y V I L N R S K G N E F I L F L S G E N K L N E F F L S L C R K I I L C K C M .................................................................................................................................................. Protein_Len: 60 Strand: - Start: 948 End: 1130 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... K R F Y L N L F A A V V S N K C N L Q N Y R M S I C H S K K I K R K R F Y S L P L R R K K S K R F I S F S V T Q Y D F M .......................................................................................................................................................... Protein_Len: 39 Strand: - Start: 863 End: 979 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. P S H I Y L S Y K L S Q L N R I I G F T V C Q C L V I R N K E F I C T S F H M ................................................................................................................................................................................................................................................................................................................. Protein_Len: 44 Strand: - Start: 844 End: 975 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... H T K I A K R V T Y T Y H T S S R S C T V F L G L R L A N A S F S E I K K S F V L Q S M ..................................................................................................................................................................................................................................................................................................................... Protein_Len: 38 Strand: - Start: 765 End: 878 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ P S V T K I A K R V T Y T Y H T R Y F P Y K V E H D T L R L L R V S Q T H M ...................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 34 Strand: - Start: 716 End: 817 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... P S H I Y L S D F I T F S I L D H R F L R L L R V S Q T H I T L G M ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 41 Strand: - Start: 609 End: 731 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ C F G R Q R R L L R V S Q T H I T L N L F F S Y F L G I S V L R L L R V S Q T H M ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 553 End: 741 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ L R V S Q T H I T L A P L Q N L L F G A T T K I A K R V T Y T Y H S Q P L L L L F A R Y E C T K I A K R V T Y T Y H T M ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 37 Strand: - Start: 355 End: 465 .................................................................................................................................................................................................................................................................................................................................................................. P S H I Y L S F T N S F C F F L C K H R L L R V S Q T H I T L F N I S S M ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 45 Strand: - Start: 205 End: 339 ............................................................................................................................................................................................................ A E S H P S K E D I E R W L A C F G P P M R K L N Y A M A E L V S Q T H T R E L G R Y D M ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 50 Strand: - Start: 74 End: 223 ......................................................................... L V A V C S A Q A N P M R T S T H I R L F N Q T T Q Q Q K E I P Q V R G K S G M R L N L G G F P S M ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 39 Strand: - Start: 3 End: 119 .. S F T G A G R K E S R P Y D E G F L G N D V K I L G S C L E S T R K A D E Y M ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. aacgaaaaagttcccgcgccacgtttttcagagcgtggatagtcttctccaaagagtccgttatccacttttataagaccgctacacaactcgcttgtgcgtttggcatcctcgtagatgtgtgaatacgaaggaagttttgagttgtttgctgttgtttttctatcggttggactctccctttactccccattcggaggtttaagcctccgaatggggagatttttcgtctatttcacgccatagagcacagaagcccgggggcatgcgcttaagattgtaggccatcgcttccagaacactctgtgtatgcgttcgttctaaccctcggtaatcaatgtcttaatagccttacggactgtgtatgtatagtgagaacgtattactaaagcagaaaaacaagcatttgtgtcttaatagccttacagactgtgtatgtatagtgagaaaattaattgaacttataaaatgttcttaatctgtcttaatagccttacggactgtgtatgtatagtgagaattagactctccaattggataccaaacttatcaaagtcttaatagccttacggactgtgtatgtatagtgagtgcagggagttggttcagcaaaaaccccgctgtcgtcttaatagccttacggactgtgtatgtatagtgagattgaggaagaaggagtagaaaagccctatactcacaagtcttaatagccttacggactgtgtatgtatagtgagtcaaaaattgtaaaacttattaagtcatggcgaaacagtcttaatagccttacggactgtgtatgtatagtgagtccgatagaatgggtactttacctcatggtcagtgagtcttaatagccttacggactgtgtatgtatagtgagtacttgagcgactgcaagttacgaataatcccaaacgtaacgcattggcagagaacgattctatttttttcgaaaatacaagttgagaaatgcagctacaacactatttttgcagttgagttgattatatctcattgatatacaatgagatttcttgattttccgttttcgaaaataagaaagagggagccttcgttttttagattttcgaaaaatagagaaagacaccgtttgataatcaaacacttacaaatagcgaaaagcctctatttttcgaaaataaaagtcccaattctccttttctcctattttcgaaaaacaggagaaaagagttgttcttgcaaccgactgataatcaatacgtcaaagagcgatgtgaggttcgatttttttcgaaaaa Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ aacgaaaaagttcccgcgccacgtttttcagagcgtggatagtcttctccaaagagtccgttatccacttttataagaccgctacacaactcgcttgtgcgtttggcatcctcgtagatgtgtgaatacgaaggaagttttgagttgtttgctgttgtttttctatcggttggactctccctttactccccattcggaggtttaagcctccgaatggggagatttttcgtctatttcacgccatagagcacagaagcccgggggcatgcgcttaagattgtaggccatcgcttccagaacactctgtgtatgcgttcgttctaaccctcggtaatcaatgtcttaatagccttacggactgtgtatgtatagtgagaacgtattactaaagcagaaaaacaagcatttgtgtcttaatagccttacagactgtgtatgtatagtgagaaaattaattgaacttataaaatgttcttaatctgtcttaatagccttacggactgtgtatgtatagtgagaattagactctccaattggataccaaacttatcaaagtcttaatagccttacggactgtgtatgtatagtgagtgcagggagttggttcagcaaaaaccccgctgtcgtcttaatagccttacggactgtgtatgtatagtgagattgaggaagaaggagtagaaaagccctatactcacaagtcttaatagccttacggactgtgtatgtatagtgagtcaaaaattgtaaaacttattaagtcatggcgaaacagtcttaatagccttacggactgtgtatgtatagtgagtccgatagaatgggtactttacctcatggtcagtgagtcttaatagccttacggactgtgtatgtatagtgagtacttgagcgactgcaagttacgaataatcccaaacgtaacgcattggcagagaacgattctatttttttcgaaaatacaagttgagaaatgcagctacaacactatttttgcagttgagttgattatatctcattgatatacaatgagatttcttgattttccgttttcgaaaataagaaagagggagccttcgttttttagattttcgaaaaatagagaaagacaccgtttgataatcaaacacttacaaatagcgaaaagcctctatttttcgaaaataaaagtcccaattctccttttctcctattttcgaaaaacaggagaaaagagttgttcttgcaaccgactgataatcaatacgtcaaagagcgatgtgaggttcgatttttttcgaaaaa Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 100 HP_score: -20.7 Tail_Score: -4.90217 Start: 185 End: 222 Full_Region: TTGGACTCTCCCTTT ACTCCCCATTCGGAGGT TTAA GCCTCCGAATGGGGAGA TTTTTCGTCTATTTC ........................................................................................................................................................................................ACTCCCCATTCGGAGGTTTAAGCCTCCGAATGGGGAGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 100 HP_score: -24.2 Tail_Score: -3.52503 Start: 186 End: 221 Full_Region: TGGACTCTCCCTTTA CTCCCCATTCGGAGGT TTAA GCCTCCGAATGGGGAG ATTTTTCGTCTATTT .........................................................................................................................................................................................CTCCCCATTCGGAGGTTTAAGCCTCCGAATGGGGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 42 HP_score: -2.0 Tail_Score: -2.94099 Start: 424 End: 436 Full_Region: GTGTCTTAATAGCCT TACA GACTG TGTA TGTATAGTGAGAAAA .......................................................................................................................................................................................................................................................................................................................................................................................................................................TACAGACTGTGTA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ TransTerm Strand: + Conf: 85 HP_score: -8.4 Tail_Score: -4.45765 Start: 1014 End: 1034 Full_Region: GTTGAGTTGATTATA TCTCATTG ATATA CAATGAGA TTTCTTGATTTTCCG .....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCATTGATATACAATGAGA.......................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 40 HP_score: -2.2 Tail_Score: -2.7386 Start: 1141 End: 1160 Full_Region: tgggacttttatttt cgaaaa atagaggc ttttcg ctatttgtaagtgtt ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cgaaaaatagaggcttttcg............................................................................................................................ TransTerm Strand: + Conf: 86 HP_score: -10.9 Tail_Score: -3.9461 Start: 1179 End: 1216 Full_Region: ATAAAAGTCCCAATT CTCCTTTTCTCCTATTTT CGA AAAACAGGAGAAAAGAG TTGTTCTTGCAACCG ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCTTTTCTCCTATTTTCGAAAAACAGGAGAAAAGAG.................................................................... Find igs database================================================ Query_seq: PG1980:PG1981|PG1980:PG1981:hypothetical protein:CRISPR-associated protein Cas2:<-<-:2068021..2069304 1284 aacgaaaaagttcccgcgccacgtttttcagagcgtggatagtcttctccaaagagtccgttatccacttttataagaccgctacacaactcgcttgtgcgtttggcatcctcgtagatgtgtgaatacgaaggaagttttgagttgtttgctgttgtttttctatcggttggactctccctttactccccattcggaggtttaagcctccgaatggggagatttttcgtctatttcacgccatagagcacagaagcccgggggcatgcgcttaagattgtaggccatcgcttccagaacactctgtgtatgcgttcgttctaaccctcggtaatcaatgtcttaatagccttacggactgtgtatgtatagtgagaacgtattactaaagcagaaaaacaagcatttgtgtcttaatagccttacagactgtgtatgtatagtgagaaaattaattgaacttataaaatgttcttaatctgtcttaatagccttacggactgtgtatgtatagtgagaattagactctccaattggataccaaacttatcaaagtcttaatagccttacggactgtgtatgtatagtgagtgcagggagttggttcagcaaaaaccccgctgtcgtcttaatagccttacggactgtgtatgtatagtgagattgaggaagaaggagtagaaaagccctatactcacaagtcttaatagccttacggactgtgtatgtatagtgagtcaaaaattgtaaaacttattaagtcatggcgaaacagtcttaatagccttacggactgtgtatgtatagtgagtccgatagaatgggtactttacctcatggtcagtgagtcttaatagccttacggactgtgtatgtatagtgagtacttgagcgactgcaagttacgaataatcccaaacgtaacgcattggcagagaacgattctatttttttcgaaaatacaagttgagaaatgcagctacaacactatttttgcagttgagttgattatatctcattgatatacaatgagatttcttgattttccgttttcgaaaataagaaagagggagccttcgttttttagattttcgaaaaatagagaaagacaccgtttgataatcaaacacttacaaatagcgaaaagcctctatttttcgaaaataaaagtcccaattctccttttctcctattttcgaaaaacaggagaaaagagttgttcttgcaaccgactgataatcaatacgtcaaagagcgatgtgaggttcgatttttttcgaaaaa Intra-Species Hit: Count: 1 Min: 1 Max: 1270 Len: 1270 Subject: NC_002950_PG1980_PG1981|hypothetical protein:CRISPR-associated protein Cas2|NEGATIVE:NEGATIVE|[2068021,2069304]|1284 HSP 1 e-value: 0.0 bit: 2476.0 Len: 1270 Query Start:1 Query End:1270 Subject Strand: POSITIVE Subject Start: 1 Subject End: 1270 aacgaaaaagttcccgcgccacgtttttcagagcgtggatagtcttctccaaagagtccgttatccacttttataagaccgctacacaactcgcttgtgcgtttggcatcctcgtagatgtgtgaatacgaaggaagttttgagttgtttgctgttgtttttctatcggttggactctccctttactccccattcggaggtttaagcctccgaatggggagatttttcgtctatttcacgccatagagcacagaagcccgggggcatgcgcttaagattgtaggccatcgcttccagaacactctgtgtatgcgttcgttctaaccctcggtaatcaatgtcttaatagccttacggactgtgtatgtatagtgagaacgtattactaaagcagaaaaacaagcatttgtgtcttaatagccttacagactgtgtatgtatagtgagaaaattaattgaacttataaaatgttcttaatctgtcttaatagccttacggactgtgtatgtatagtgagaattagactctccaattggataccaaacttatcaaagtcttaatagccttacggactgtgtatgtatagtgagtgcagggagttggttcagcaaaaaccccgctgtcgtcttaatagccttacggactgtgtatgtatagtgagattgaggaagaaggagtagaaaagccctatactcacaagtcttaatagccttacggactgtgtatgtatagtgagtcaaaaattgtaaaacttattaagtcatggcgaaacagtcttaatagccttacggactgtgtatgtatagtgagtccgatagaatgggtactttacctcatggtcagtgagtcttaatagccttacggactgtgtatgtatagtgagtacttgagcgactgcaagttacgaataatcccaaacgtaacgcattggcagagaacgattctannnnnnncgaaaatacaagttgagaaatgcagctacaacactatttttgcagttgagttgattatatctcattgatatacaatgagatttcttgattttccgttttcgaaaataagaaagagggagccttcgttttttagattttcgaaaaatagagaaagacaccgtttgataatcaaacacttacaaatagcgaaaagcctctatttttcgaaaataaaagtcccaattctccttttctcctattttcgaaaaacaggagaaaagagttgttcttgcaaccgactgataatcaatacgtcaaagagcgatgtgaggttcga.............. aacgaaaaagttcccgcgccacgtttttcagagcgtggatagtcttctccaaagagtccgttatccacttttataagaccgctacacaactcgcttgtgcgtttggcatcctcgtagatgtgtgaatacgaaggaagttttgagttgtttgctgttgtttttctatcggttggactctccctttactccccattcggaggtttaagcctccgaatggggagatttttcgtctatttcacgccatagagcacagaagcccgggggcatgcgcttaagattgtaggccatcgcttccagaacactctgtgtatgcgttcgttctaaccctcggtaatcaatgtcttaatagccttacggactgtgtatgtatagtgagaacgtattactaaagcagaaaaacaagcatttgtgtcttaatagccttacagactgtgtatgtatagtgagaaaattaattgaacttataaaatgttcttaatctgtcttaatagccttacggactgtgtatgtatagtgagaattagactctccaattggataccaaacttatcaaagtcttaatagccttacggactgtgtatgtatagtgagtgcagggagttggttcagcaaaaaccccgctgtcgtcttaatagccttacggactgtgtatgtatagtgagattgaggaagaaggagtagaaaagccctatactcacaagtcttaatagccttacggactgtgtatgtatagtgagtcaaaaattgtaaaacttattaagtcatggcgaaacagtcttaatagccttacggactgtgtatgtatagtgagtccgatagaatgggtactttacctcatggtcagtgagtcttaatagccttacggactgtgtatgtatagtgagtacttgagcgactgcaagttacgaataatcccaaacgtaacgcattggcagagaacgattctatttttttcgaaaatacaagttgagaaatgcagctacaacactatttttgcagttgagttgattatatctcattgatatacaatgagatttcttgattttccgttttcgaaaataagaaagagggagccttcgttttttagattttcgaaaaatagagaaagacaccgtttgataatcaaacacttacaaatagcgaaaagcctctatttttcgaaaataaaagtcccaattctccttttctcctattttcgaaaaacaggagaaaagagttgttcttgcaaccgactgataatcaatacgtcaaagagcgatgtgaggttcga.............. HSP 2 e-value: 3.0E-6 bit: 56.0 Len: 36 Query Start:186 Query End:221 Subject Strand: NEGATIVE Subject Start: 186 Subject End: 221 .........................................................................................................................................................................................ctccccattcggaggtttaagcctccgaatggggag....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .........................................................................................................................................................................................ctccccattcggaggcttaaacctccgaatggggag....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AACGAAAAAGUUCCCGCGCCACGUUUUUCAGAGCGUGGAUAGUCUUCUCCAAAGAGUCCGUUAUCCACUUUUAUAAGACCGCUACACAACUCGCUUGUGCGUUUGGCAUCCUCGUAGAUGUGUGAAUACGAAGGAAGUUUUGAGUUGUUUGCUGUUGUUUUUCUAUCGGUUGGACUCUCCCUUUACUCCCCAUUCGGAGGUUUAAGCCUCCGAAUGGGGAGAUUUUUCGUCUAUUUCACGCCAUAGAGCACAGAAGCCCGGGGGCAUGCGCUUAAGAUUGUAGGCCAUCGCUUCCAGAACACUCUGUGUAUGCGUUCGUUCUAACCCUCGGUAAUCAAUGUCUUAAUAGCCUUACGGACUGUGUAUGUAUAGUGAGAACGUAUUACUAAAGCAGAAAAACAAGCAUUUGUGUCUUAAUAGCCUUACAGACUGUGUAUGUAUAGUGAGAAAAUUAAUUGAACUUAUAAAAUGUUCUUAAUCUGUCUUAAUAGCCUUACGGACUGUGUAUGUAUAGUGAGAAUUAGACUCUCCAAUUGGAUACCAAACUUAUCAAAGUCUUAAUAGCCUUACGGACUGUGUAUGUAUAGUGAGUGCAGGGAGUUGGUUCAGCAAAAACCCCGCUGUCGUCUUAAUAGCCUUACGGACUGUGUAUGUAUAGUGAGAUUGAGGAAGAAGGAGUAGAAAAGCCCUAUACUCACAAGUCUUAAUAGCCUUACGGACUGUGUAUGUAUAGUGAGUCAAAAAUUGUAAAACUUAUUAAGUCAUGGCGAAACAGUCUUAAUAGCCUUACGGACUGUGUAUGUAUAGUGAGUCCGAUAGAAUGGGUACUUUACCUCAUGGUCAGUGAGUCUUAAUAGCCUUACGGACUGUGUAUGUAUAGUGAGUACUUGAGCGACUGCAAGUUACGAAUAAUCCCAAACGUAACGCAUUGGCAGAGAACGAUUCUAUUUUUUUCGAAAAUACAAGUUGAGAAAUGCAGCUACAACACUAUUUUUGCAGUUGAGUUGAUUAUAUCUCAUUGAUAUACAAUGAGAUUUCUUGAUUUUCCGUUUUCGAAAAUAAGAAAGAGGGAGCCUUCGUUUUUUAGAUUUUCGAAAAAUAGAGAAAGACACCGUUUGAUAAUCAAACACUUACAAAUAGCGAAAAGCCUCUAUUUUUCGAAAAUAAAAGUCCCAAUUCUCCUUUUCUCCUAUUUUCGAAAAACAGGAGAAAAGAGUUGUUCUUGCAACCGACUGAUAAUCAAUACGUCAAAGAGCGAUGUGAGGUUCGA ..((((...((((((...((((((((....))))))))...((..(((((((..((((.(((..(((.((((((..((((((((.(((...(((..((.(((..(((.((((((((..........)))).))))..((((((.((.((((((.((.((((((.(((.(((((((((((((....((((((((((((((((....)))))))))))))))).......(((((((((((....(((..((((((.((..(((((((((.(((((......)))))))).)))))).......(((((((((((((((......(((...)))..(((.((((...((((((....)).))))....).))).)))))))))).)))....))))).......)).))))))..)))...((..(((((.(((((...((....(((((..(((((..((((.........)))))))))...)))))...))..))))).)))))...))...))))))..)))))..(((....))).........................(((((((..((.......))...))))).)).)))))..))))))))........(((((((((....((((((....)).))))..))).)))))).))).))))))..)).))))))......((((((.((((.(((((((.....))).))))))))...)))))).)).))))))...........(((((((.(.((......))).))))))))))..))).)).)))..))).))))).)))..)))))))))(((((((((..(((((((.(((((.((....)).))))).)))))))...)))....))))))...)))))))....((((((............))))))...)))).)))..))..((((....(((((((((((..((((..((((...(((((.((((............))))))))).....(((((((((.....)))))))))))))..))))...)))))))))))..))))...))))))..(((((((((..(((((((((((((((((.........(((((.....)))))...........((.....)))))))))))))))))))...((((.........((((((((((.(((.....))).)))))))))).(((((....))))).))))...............))))))))).......)))). (-376.80) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UCGAACCUCACAUCGCUCUUUGACGUAUUGAUUAUCAGUCGGUUGCAAGAACAACUCUUUUCUCCUGUUUUUCGAAAAUAGGAGAAAAGGAGAAUUGGGACUUUUAUUUUCGAAAAAUAGAGGCUUUUCGCUAUUUGUAAGUGUUUGAUUAUCAAACGGUGUCUUUCUCUAUUUUUCGAAAAUCUAAAAAACGAAGGCUCCCUCUUUCUUAUUUUCGAAAACGGAAAAUCAAGAAAUCUCAUUGUAUAUCAAUGAGAUAUAAUCAACUCAACUGCAAAAAUAGUGUUGUAGCUGCAUUUCUCAACUUGUAUUUUCGAAAAAAAUAGAAUCGUUCUCUGCCAAUGCGUUACGUUUGGGAUUAUUCGUAACUUGCAGUCGCUCAAGUACUCACUAUACAUACACAGUCCGUAAGGCUAUUAAGACUCACUGACCAUGAGGUAAAGUACCCAUUCUAUCGGACUCACUAUACAUACACAGUCCGUAAGGCUAUUAAGACUGUUUCGCCAUGACUUAAUAAGUUUUACAAUUUUUGACUCACUAUACAUACACAGUCCGUAAGGCUAUUAAGACUUGUGAGUAUAGGGCUUUUCUACUCCUUCUUCCUCAAUCUCACUAUACAUACACAGUCCGUAAGGCUAUUAAGACGACAGCGGGGUUUUUGCUGAACCAACUCCCUGCACUCACUAUACAUACACAGUCCGUAAGGCUAUUAAGACUUUGAUAAGUUUGGUAUCCAAUUGGAGAGUCUAAUUCUCACUAUACAUACACAGUCCGUAAGGCUAUUAAGACAGAUUAAGAACAUUUUAUAAGUUCAAUUAAUUUUCUCACUAUACAUACACAGUCUGUAAGGCUAUUAAGACACAAAUGCUUGUUUUUCUGCUUUAGUAAUACGUUCUCACUAUACAUACACAGUCCGUAAGGCUAUUAAGACAUUGAUUACCGAGGGUUAGAACGAACGCAUACACAGAGUGUUCUGGAAGCGAUGGCCUACAAUCUUAAGCGCAUGCCCCCGGGCUUCUGUGCUCUAUGGCGUGAAAUAGACGAAAAAUCUCCCCAUUCGGAGGCUUAAACCUCCGAAUGGGGAGUAAAGGGAGAGUCCAACCGAUAGAAAAACAACAGCAAACAACUCAAAACUUCCUUCGUAUUCACACAUCUACGAGGAUGCCAAACGCACAAGCGAGUUGUGUAGCGGUCUUAUAAAAGUGGAUAACGGACUCUUUGGAGAAGACUAUCCACGCUCUGAAAAACGUGGCGCGGGAACUUUUUCGUU .((((.......((..((((..(.(((((((.(((.((.((..((((((.......((((((((((((((.....))))))))))))))((((((.(((((((((((((((((((((((((((.....(((..(((((((........))).))))..)))....)))))))))))))))))).........))))).))))...((((..((((((((((........((((..(((((((((.....)))))))))..........((.((((((........)))))).))..........))))..))))))))))....))))..))))))..((((.(((...)))))))............))))))..))))...))).)))..))))......(((((((....((((((((((..(((.(((....)))..))).....(((((((((......(((((.((((.((((.((((((((((((((.(((......)).).)))))).)))))))).........................((.((....)))).....)))))))).)))))((((((((((.((((.......((((..((.............((.((....))))........((..((((((...(((......)))..))))))..)).............((.((....)))).....))..)))).....((((...))))..)))).(((((.(((.(.(((((............(((.(((((((....((((....((((.........))))........................(((.((((((((((....((((((........))))))...))))).......((((((.(((.....(((.......))).((..(((((....)))))..))...))).)))))).........))))).))))))).....)))))))))).......((((((.(((....)))...)))))).))))).).))).))))).......(((((((((((((((......)))))))))))))))....))))))))))..)))))))))........((..(((((((........(((((((..........))))))).(((.....))).....)))))))...)).)))))).....))))...)))))))..)..)))).))...(((.((((.((.....)).)))).)))......)))).. (-345.20) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 1029 60 11 151 102 NC_002950:PG1980|5end_hypothetical_protein_2067930..2068160_NEGATIVE 536 39 1 94 56 NC_002950:PG2064|5end_hypothetical_protein_2160550..2160780_POSITIVE 423 622 586 173 143 NC_002950:PG2133|5end_lipoprotein,_putative_2239002..2239232_POSITIVE 414 34 3 103 73 NC_002950:PG1799|5end_hypothetical_protein_1894499..1894729_POSITIVE 400 290 242 199 142 NC_002950:PG2109|5end_thiamine-phosphate_pyrophosphorylase_2219452..2219682_NEGATIVE 399 38 1 188 150 NC_002950:PG0132|5end_hypothetical_protein_152879..153109_POSITIVE 398 57 11 59 16 NC_002950:PG2188|5end_diaminopimelate_decarboxylase_2295781..2296011_NEGATIVE 394 44 3 50 7 NC_002950:PG0524|5end_hypothetical_protein_568599..568829_POSITIVE 376 290 241 93 22 NC_002950:PG0352|5end_sialidase,_putative_387187..387417_POSITIVE 375 620 571 189 129 NC_002950:PG0326|5end_hypothetical_protein_360974..361204_NEGATIVE 375 1260 1213 68 12 NC_002950:PG0205|5end_peptide_chain_release_factor_3_242093..242323_NEGATIVE 371 610 563 220 167 NC_002950:PG1058|5end_OmpA_family_protein_1124034..1124264_POSITIVE 367 46 3 166 123 NC_002950:PG1645|5end_ISPg5,_transposase_Orf1_1726062..1726292_NEGATIVE 365 60 11 231 176 NC_002950:PG0415|5end_peptidyl-prolyl_cis-trans_isomerase,_PPIC-type_455096..455326_NEGATIVE 364 34 1 94 58 NC_002950:PG0313|5end_hypothetical_protein_347366..347596_POSITIVE 363 37 1 127 90 NC_002950:PG1617|5end_hypothetical_protein_1697755..1697985_NEGATIVE 363 125 81 216 155 NC_002950:PG0963|5end_hypothetical_protein_1024332..1024562_NEGATIVE 362 321 283 144 101 NC_002950:PG2098|5end_hypothetical_protein_2206635..2206865_NEGATIVE 361 628 586 186 138 NC_002950:PG2149|5end_hypothetical_protein_2257658..2257888_NEGATIVE 359 269 224 230 182 NC_002950:PG1671|5end_hypothetical_protein_1757658..1757888_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 443 47 1 88 30 NC_002950:PG0542|3end_hypothetical_protein_595377..595527_NEGATIVE 423 622 586 34 4 NC_002950:PG2132|3end_fimbrilin_2238943..2239093_POSITIVE 394 630 582 119 57 NC_002950:PG0443|3end_hemagglutinin-related_protein_483147..483297_POSITIVE 362 321 283 130 87 NC_002950:PG2099|3end_ATP-dependent_RNA_helicase,_DEAD/DEAH_box_family_2206649..2206799_NEGATIVE 355 220 172 86 26 NC_002950:PG0164|3end_hypothetical_protein_187081..187231_NEGATIVE 353 637 597 150 108 NC_002950:PG0949|3end_hypothetical_protein_1009773..1009923_POSITIVE 349 290 243 58 13 NC_002950:PG1789|3end_peptidyl-dipeptidase_Dcp_1877417..1877567_NEGATIVE 349 218 172 117 52 NC_002950:PG1196|3end_hypothetical_protein_1275359..1275509_POSITIVE 348 360 313 38 1 NC_002950:PG1005|3end_lipoprotein,_putative_1063023..1063173_NEGATIVE 347 290 249 89 38 NC_002950:PG1595|3end_ribulose-phosphate_3-epimerase_1673594..1673744_NEGATIVE 343 609 562 138 88 NC_002950:PG1110|3end_hypothetical_protein_1183237..1183387_POSITIVE 342 273 240 65 25 NC_002950:PG2167|3end_immunoreactive_53_kDa_antigen_PG123_2272104..2272254_NEGATIVE 340 63 31 33 2 NC_002950:PG2189|3end_aspartate_kinase_2295811..2295961_NEGATIVE 338 1080 1038 48 11 NC_002950:PG1543|3end_thioesterase_family_protein_1622587..1622737_POSITIVE 338 294 255 138 104 NC_002950:PG0926|3end_hypothetical_protein_984407..984557_NEGATIVE 338 218 173 144 82 NC_002950:PG0610|3end_hypothetical_protein_663604..663754_NEGATIVE 335 271 239 116 70 NC_002950:PG1841|3end_hypothetical_protein_1938313..1938463_POSITIVE 335 44 1 112 65 NC_002950:PG0732|3end_hypothetical_protein_783018..783168_POSITIVE 334 296 255 63 12 NC_002950:PG1433|3end_hydrolase_1519126..1519276_POSITIVE 334 179 132 143 93 NC_002950:PG1312|3end_capA_protein,_putative_1391553..1391703_POSITIVE