Origin IGS: tccccccgtgccgtcctgccggccgcagcagcacaggcaaccgagtataaaagacaaaggggctgtgaccaaattcatttttggcacagccccttgtatattcgaaaaattaggtgttagccctgattagcctttttctctgtttacaaactatgtctaaagaaaagtcctatgctaggacttagccaacaacgcattttcttacttgcgtcaaccatgcttttaccgacagctgctgataaatcgactttggctccaatgcatttaccctctttcactttgaaaccgagttccattcctgctgtcatcgcgaaagcacccatgctcttggttctagatattacaccacctgcgaggtcttgccgatcttcgaaattccaagtatgcatatacccaatggcaataggagcagccaattcaattcgatcattatcaatatgataatggcgaatcactatgccagcaaatgtgttaaacacattattctctatcccaatgttgttgccagagataaaacttgcaattctgttattatagagacctagatctactaacagacctaaacttgtgcgatctgcaaacttcttgtagcttaattctacagacgcagctactccgggattatttgctaatggagcacgctcatccaataaagacaagttggacactaacattggaactcccatcctaaaagagctacttaggataagcccttcagatttgcttgtttcttgcgcaagcgaaggtattgttatggctaaaagcgcaaaaacaaacaaataccactttg .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 caaagtggtatttgtttgtttttgcgcttttagccataacaataccttcgcttgcgcaagaaacaagcaaatctgaagggcttatcctaagtagctcttttaggatgggagttccaatgttagtgtccaacttgtctttattggatgagcgtgctccattagcaaataatcccggagtagctgcgtctgtagaattaagctacaagaagtttgcagatcgcacaagtttaggtctgttagtagatctaggtctctataataacagaattgcaagttttatctctggcaacaacattgggatagagaataatgtgtttaacacatttgctggcatagtgattcgccattatcatattgataatgatcgaattgaattggctgctcctattgccattgggtatatgcatacttggaatttcgaagatcggcaagacctcgcaggtggtgtaatatctagaaccaagagcatgggtgctttcgcgatgacagcaggaatggaactcggtttcaaagtgaaagagggtaaatgcattggagccaaagtcgatttatcagcagctgtcggtaaaagcatggttgacgcaagtaagaaaatgcgttgttggctaagtcctagcataggacttttctttagacatagtttgtaaacagagaaaaaggctaatcagggctaacacctaatttttcgaatatacaaggggctgtgccaaaaatgaatttggtcacagcccctttgtcttttatactcggttgcctgtgctgctgcggccggcaggacggcacgggggga Mask Tandem Repeat Region ================================================ tccccccgtgccgtcctgccggccgcagcagcacaggcaaccgagtataaaagacaaaggggctgtgaccaaattcatttttggcacagccccttgtatattcgaaaaattaggtgttagccctgattagcctttttctctgtttacaaactatgtctaaagaaaagtcctatgctaggacttagccaacaacgcattttcttacttgcgtcaaccatgcttttaccgacagctgctgataaatcgactttggctccaatgcatttaccctctttcactttgaaaccgagttccattcctgctgtcatcgcgaaagcacccatgctcttggttctagatattacaccacctgcgaggtcttgccgatcttcgaaattccaagtatgcatatacccaatggcaataggagcagccaattcaattcgatcattatcaatatgataatggcgaatcactatgccagcaaatgtgttaaacacattattctctatcccaatgttgttgccagagataaaacttgcaattctgttattatagagacctagatctactaacagacctaaacttgtgcgatctgcaaacttcttgtagcttaattctacagacgcagctactccgggattatttgctaatggagcacgctcatccaataaagacaagttggacactaacattggaactcccatcctaaaagagctacttaggataagcccttcagatttgcttgtttcttgcgcaagcgaaggtattgttatggctaaaagcgcaaaaacaaacaaataccactttg Find is-nt database================================================ Query_seq: PG1972:PG1974|PG1972:PG1974:hemagglutinin protein HagB:hypothetical protein:-><-:2061264..2062053 790 tccccccgtgccgtcctgccggccgcagcagcacaggcaaccgagtataaaagacaaaggggctgtgaccaaattcatttttggcacagccccttgtatattcgaaaaattaggtgttagccctgattagcctttttctctgtttacaaactatgtctaaagaaaagtcctatgctaggacttagccaacaacgcattttcttacttgcgtcaaccatgcttttaccgacagctgctgataaatcgactttggctccaatgcatttaccctctttcactttgaaaccgagttccattcctgctgtcatcgcgaaagcacccatgctcttggttctagatattacaccacctgcgaggtcttgccgatcttcgaaattccaagtatgcatatacccaatggcaataggagcagccaattcaattcgatcattatcaatatgataatggcgaatcactatgccagcaaatgtgttaaacacattattctctatcccaatgttgttgccagagataaaacttgcaattctgttattatagagacctagatctactaacagacctaaacttgtgcgatctgcaaacttcttgtagcttaattctacagacgcagctactccgggattatttgctaatggagcacgctcatccaataaagacaagttggacactaacattggaactcccatcctaaaagagctacttaggataagcccttcagatttgcttgtttcttgcgcaagcgaaggtattgttatggctaaaagcgcaaaaacaaacaaataccactttg Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PG1972:PG1974|PG1972:PG1974:hemagglutinin protein HagB:hypothetical protein:-><-:2061264..2062053 790 tccccccgtgccgtcctgccggccgcagcagcacaggcaaccgagtataaaagacaaaggggctgtgaccaaattcatttttggcacagccccttgtatattcgaaaaattaggtgttagccctgattagcctttttctctgtttacaaactatgtctaaagaaaagtcctatgctaggacttagccaacaacgcattttcttacttgcgtcaaccatgcttttaccgacagctgctgataaatcgactttggctccaatgcatttaccctctttcactttgaaaccgagttccattcctgctgtcatcgcgaaagcacccatgctcttggttctagatattacaccacctgcgaggtcttgccgatcttcgaaattccaagtatgcatatacccaatggcaataggagcagccaattcaattcgatcattatcaatatgataatggcgaatcactatgccagcaaatgtgttaaacacattattctctatcccaatgttgttgccagagataaaacttgcaattctgttattatagagacctagatctactaacagacctaaacttgtgcgatctgcaaacttcttgtagcttaattctacagacgcagctactccgggattatttgctaatggagcacgctcatccaataaagacaagttggacactaacattggaactcccatcctaaaagagctacttaggataagcccttcagatttgcttgtttcttgcgcaagcgaaggtattgttatggctaaaagcgcaaaaacaaacaaataccactttg Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PG1972:PG1974|PG1972:PG1974:hemagglutinin protein HagB:hypothetical protein:-><-:2061264..2062053 790 tccccccgtgccgtcctgccggccgcagcagcacaggcaaccgagtataaaagacaaaggggctgtgaccaaattcatttttggcacagccccttgtatattcgaaaaattaggtgttagccctgattagcctttttctctgtttacaaactatgtctaaagaaaagtcctatgctaggacttagccaacaacgcattttcttacttgcgtcaaccatgcttttaccgacagctgctgataaatcgactttggctccaatgcatttaccctctttcactttgaaaccgagttccattcctgctgtcatcgcgaaagcacccatgctcttggttctagatattacaccacctgcgaggtcttgccgatcttcgaaattccaagtatgcatatacccaatggcaataggagcagccaattcaattcgatcattatcaatatgataatggcgaatcactatgccagcaaatgtgttaaacacattattctctatcccaatgttgttgccagagataaaacttgcaattctgttattatagagacctagatctactaacagacctaaacttgtgcgatctgcaaacttcttgtagcttaattctacagacgcagctactccgggattatttgctaatggagcacgctcatccaataaagacaagttggacactaacattggaactcccatcctaaaagagctacttaggataagcccttcagatttgcttgtttcttgcgcaagcgaaggtattgttatggctaaaagcgcaaaaacaaacaaataccactttg Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 tccccccgtgccgtcctgccggccgcagcagcacaggcaaccgagtataaaagacaaaggggctgtgaccaaattcatttttggcacagccccttgtatattcgaaaaattaggtgttagccctgattagcctttttctctgtttacaaactatgtctaaagaaaagtcctatgctaggacttagccaacaacgcattttcttacttgcgtcaaccatgcttttaccgacagctgctgataaatcgactttggctccaatgcatttaccctctttcactttgaaaccgagttccattcctgctgtcatcgcgaaagcacccatgctcttggttctagatattacaccacctgcgaggtcttgccgatcttcgaaattccaagtatgcatatacccaatggcaataggagcagccaattcaattcgatcattatcaatatgataatggcgaatcactatgccagcaaatgtgttaaacacattattctctatcccaatgttgttgccagagataaaacttgcaattctgttattatagagacctagatctactaacagacctaaacttgtgcgatctgcaaacttcttgtagcttaattctacagacgcagctactccgggattatttgctaatggagcacgctcatccaataaagacaagttggacactaacattggaactcccatcctaaaagagctacttaggataagcccttcagatttgcttgtttcttgcgcaagcgaaggtattgttatggctaaaagcgcaaaaacaaacaaataccactttg Predict ORF larger than 30AA ================================================ Protein_Len: 34 Strand: + Start: 16 End: 117 ............... M P A A A A Q A T E Y K R Q R G C D Q I H F W H S P L Y I R K I R C ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 40 Strand: + Start: 8 End: 127 ....... M P S C R P Q Q H R Q P S I K D K G A V T K F I F G T A P C I F E K L G V S P D ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 172 End: 438 ........................................................................................................................................................................... M L G L S Q Q R I F L L A S T M L L P T A A D K S T L A P M H L P S F T L K P S S I P A V I A K A P M L L V L D I T P P ................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 60 Strand: + Start: 243 End: 542 .................................................................................................................................................................................................................................................. M D F G S N A F T L F H F E T E F H S C C H R E S T H A L G S R Y Y T T C E V L P I F E I P S M H I P N G N R S S Q F N ........................................................................................................................................................................................................................................................ Protein_Len: 57 Strand: + Start: 518 End: 688 ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M Q F C Y Y R D L D L L T D L N L C D L Q T S C S L I L Q T Q L L R D Y L L M E H A H P I K T S W T L T L E L P S ...................................................................................................... Protein_Len: 43 Strand: + Start: 661 End: 789 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M D T N I G T P I L K E L L R I S P S D L L V S C A S E G I V M A K S A K T N K Y H F . Protein_Len: 34 Strand: - Start: 344 End: 445 ....................................................................................................................................................................................................................................................................................................................................................... V V Q S T K G I K S I G L I C I G L P L L L L W N L E I M I L I I M ......................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 147 End: 779 .................................................................................................................................................. V S A A V G P N N A L P A R E D L L S L N S V L M P V G M R F S S S L I L G E S K S T E Q A L S P I T I A L L A F V F M ........... Protein_Len: 33 Strand: - Start: 1 End: 99 G G T G D Q R G C C C L C G L I F S L P A T V L N M K P V A G Q M ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... tccccccgtgccgtcctgccggccgcagcagcacaggcaaccgagtataaaagacaaaggggctgtgaccaaattcatttttggcacagccccttgtatattcgaaaaattaggtgttagccctgattagcctttttctctgtttacaaactatgtctaaagaaaagtcctatgctaggacttagccaacaacgcattttcttacttgcgtcaaccatgcttttaccgacagctgctgataaatcgactttggctccaatgcatttaccctctttcactttgaaaccgagttccattcctgctgtcatcgcgaaagcacccatgctcttggttctagatattacaccacctgcgaggtcttgccgatcttcgaaattccaagtatgcatatacccaatggcaataggagcagccaattcaattcgatcattatcaatatgataatggcgaatcactatgccagcaaatgtgttaaacacattattctctatcccaatgttgttgccagagataaaacttgcaattctgttattatagagacctagatctactaacagacctaaacttgtgcgatctgcaaacttcttgtagcttaattctacagacgcagctactccgggattatttgctaatggagcacgctcatccaataaagacaagttggacactaacattggaactcccatcctaaaagagctacttaggataagcccttcagatttgcttgtttcttgcgcaagcgaaggtattgttatggctaaaagcgcaaaaacaaacaaataccactttg Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: - Score: 81 Start: 438 End: 467 .....................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCTGGCATAGTGATTCGCCATTATCAT................................................................................................................................................................................................................................................................................................................................... Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ tccccccgtgccgtcctgccggccgcagcagcacaggcaaccgagtataaaagacaaaggggctgtgaccaaattcatttttggcacagccccttgtatattcgaaaaattaggtgttagccctgattagcctttttctctgtttacaaactatgtctaaagaaaagtcctatgctaggacttagccaacaacgcattttcttacttgcgtcaaccatgcttttaccgacagctgctgataaatcgactttggctccaatgcatttaccctctttcactttgaaaccgagttccattcctgctgtcatcgcgaaagcacccatgctcttggttctagatattacaccacctgcgaggtcttgccgatcttcgaaattccaagtatgcatatacccaatggcaataggagcagccaattcaattcgatcattatcaatatgataatggcgaatcactatgccagcaaatgtgttaaacacattattctctatcccaatgttgttgccagagataaaacttgcaattctgttattatagagacctagatctactaacagacctaaacttgtgcgatctgcaaacttcttgtagcttaattctacagacgcagctactccgggattatttgctaatggagcacgctcatccaataaagacaagttggacactaacattggaactcccatcctaaaagagctacttaggataagcccttcagatttgcttgtttcttgcgcaagcgaaggtattgttatggctaaaagcgcaaaaacaaacaaataccactttg Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 100 HP_score: -15.2 Tail_Score: -3.68024 Start: 59 End: 93 Full_Region: AGTATAAAAGACAAA GGGGCTGTGACCAAA TTCATT TTTGGCACAGCCCC TTGTATATTCGAAAA ..........................................................GGGGCTGTGACCAAATTCATTTTTGGCACAGCCCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 100 HP_score: -15.2 Tail_Score: -4.52142 Start: 59 End: 93 Full_Region: ttttcgaatatacaa ggggctgtgccaaa aatgaa tttggtcacagcccc tttgtcttttatact ..........................................................ggggctgtgccaaaaatgaatttggtcacagcccc......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 100 HP_score: -8.6 Tail_Score: -4.87803 Start: 167 End: 181 Full_Region: tgcgttgttggctaa gtccta gca taggac ttttctttagacata ......................................................................................................................................................................gtcctagcataggac................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: + Conf: 42 HP_score: -3.0 Tail_Score: -2.66274 Start: 575 End: 591 Full_Region: CTAAACTTGTGCGAT CTGCAA ACTTC TTGTAG CTTAATTCTACAGAC ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCAAACTTCTTGTAG....................................................................................................................................................................................................... Find igs database================================================ Query_seq: PG1972:PG1974|PG1972:PG1974:hemagglutinin protein HagB:hypothetical protein:-><-:2061264..2062053 790 tccccccgtgccgtcctgccggccgcagcagcacaggcaaccgagtataaaagacaaaggggctgtgaccaaattcatttttggcacagccccttgtatattcgaaaaattaggtgttagccctgattagcctttttctctgtttacaaactatgtctaaagaaaagtcctatgctaggacttagccaacaacgcattttcttacttgcgtcaaccatgcttttaccgacagctgctgataaatcgactttggctccaatgcatttaccctctttcactttgaaaccgagttccattcctgctgtcatcgcgaaagcacccatgctcttggttctagatattacaccacctgcgaggtcttgccgatcttcgaaattccaagtatgcatatacccaatggcaataggagcagccaattcaattcgatcattatcaatatgataatggcgaatcactatgccagcaaatgtgttaaacacattattctctatcccaatgttgttgccagagataaaacttgcaattctgttattatagagacctagatctactaacagacctaaacttgtgcgatctgcaaacttcttgtagcttaattctacagacgcagctactccgggattatttgctaatggagcacgctcatccaataaagacaagttggacactaacattggaactcccatcctaaaagagctacttaggataagcccttcagatttgcttgtttcttgcgcaagcgaaggtattgttatggctaaaagcgcaaaaacaaacaaataccactttg Intra-Species Hit: Count: 1 Min: 1 Max: 790 Len: 790 Subject: NC_002950_PG1972_PG1974|hemagglutinin protein HagB:hypothetical protein|POSITIVE:NEGATIVE|[2061264,2062053]|790 HSP 1 e-value: 0.0 bit: 1566.0 Len: 790 Query Start:1 Query End:790 Subject Strand: POSITIVE Subject Start: 1 Subject End: 790 tccccccgtgccgtcctgccggccgcagcagcacaggcaaccgagtataaaagacaaaggggctgtgaccaaattcatttttggcacagccccttgtatattcgaaaaattaggtgttagccctgattagcctttttctctgtttacaaactatgtctaaagaaaagtcctatgctaggacttagccaacaacgcattttcttacttgcgtcaaccatgcttttaccgacagctgctgataaatcgactttggctccaatgcatttaccctctttcactttgaaaccgagttccattcctgctgtcatcgcgaaagcacccatgctcttggttctagatattacaccacctgcgaggtcttgccgatcttcgaaattccaagtatgcatatacccaatggcaataggagcagccaattcaattcgatcattatcaatatgataatggcgaatcactatgccagcaaatgtgttaaacacattattctctatcccaatgttgttgccagagataaaacttgcaattctgttattatagagacctagatctactaacagacctaaacttgtgcgatctgcaaacttcttgtagcttaattctacagacgcagctactccgggattatttgctaatggagcacgctcatccaataaagacaagttggacactaacattggaactcccatcctaaaagagctacttaggataagcccttcagatttgcttgtttcttgcgcaagcgaaggtattgttatggctaaaagcgcaaaaacaaacaaataccactttg tccccccgtgccgtcctgccggccgcagcagcacaggcaaccgagtataaaagacaaaggggctgtgaccaaattcatttttggcacagccccttgtatattcgaaaaattaggtgttagccctgattagcctttttctctgtttacaaactatgtctaaagaaaagtcctatgctaggacttagccaacaacgcattttcttacttgcgtcaaccatgcttttaccgacagctgctgataaatcgactttggctccaatgcatttaccctctttcactttgaaaccgagttccattcctgctgtcatcgcgaaagcacccatgctcttggttctagatattacaccacctgcgaggtcttgccgatcttcgaaattccaagtatgcatatacccaatggcaataggagcagccaattcaattcgatcattatcaatatgataatggcgaatcactatgccagcaaatgtgttaaacacattattctctatcccaatgttgttgccagagataaaacttgcaattctgttattatagagacctagatctactaacagacctaaacttgtgcgatctgcaaacttcttgtagcttaattctacagacgcagctactccgggattatttgctaatggagcacgctcatccaataaagacaagttggacactaacattggaactcccatcctaaaagagctacttaggataagcccttcagatttgcttgtttcttgcgcaagcgaaggtattgttatggctaaaagcgcaaaaacaaacaaataccactttg Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UCCCCCCGUGCCGUCCUGCCGGCCGCAGCAGCACAGGCAACCGAGUAUAAAAGACAAAGGGGCUGUGACCAAAUUCAUUUUUGGCACAGCCCCUUGUAUAUUCGAAAAAUUAGGUGUUAGCCCUGAUUAGCCUUUUUCUCUGUUUACAAACUAUGUCUAAAGAAAAGUCCUAUGCUAGGACUUAGCCAACAACGCAUUUUCUUACUUGCGUCAACCAUGCUUUUACCGACAGCUGCUGAUAAAUCGACUUUGGCUCCAAUGCAUUUACCCUCUUUCACUUUGAAACCGAGUUCCAUUCCUGCUGUCAUCGCGAAAGCACCCAUGCUCUUGGUUCUAGAUAUUACACCACCUGCGAGGUCUUGCCGAUCUUCGAAAUUCCAAGUAUGCAUAUACCCAAUGGCAAUAGGAGCAGCCAAUUCAAUUCGAUCAUUAUCAAUAUGAUAAUGGCGAAUCACUAUGCCAGCAAAUGUGUUAAACACAUUAUUCUCUAUCCCAAUGUUGUUGCCAGAGAUAAAACUUGCAAUUCUGUUAUUAUAGAGACCUAGAUCUACUAACAGACCUAAACUUGUGCGAUCUGCAAACUUCUUGUAGCUUAAUUCUACAGACGCAGCUACUCCGGGAUUAUUUGCUAAUGGAGCACGCUCAUCCAAUAAAGACAAGUUGGACACUAACAUUGGAACUCCCAUCCUAAAAGAGCUACUUAGGAUAAGCCCUUCAGAUUUGCUUGUUUCUUGCGCAAGCGAAGGUAUUGUUAUGGCUAAAAGCGCAAAAACAAACAAAUACCACUUUG ......((.((((......))))))(((((((..((((...((((((((.......(((((((((((.(((((......)))))))))))))))).))))))))...(((((((.(....)))))))).))))....................((((.((((..((((((((...))))))))........(((((..........)))))........))))....)))))))))))......((..(((((((.((((((................((((((...((((((((.(((((.((((((.((....))....((((.((((((((.((((....((..(((.....)))..))...))))..)))...)))))...)))).......)))))).)))))..(((.......(((((.((((((((.....)))))))))))))..((((...((((((((((.....)))..........(((((...((.(((((...((((...((..(....(((((((...((((........)))).)))))))......)..))...)))).........((((((.......))))))..))))).))...))))).))))))).)))).....)))..((((((........)))))).........))))))))..(((((((.........)))))))......))))))(((((((((.......))))))))).))))))....)))))))..))........................ (-219.00) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ CAAAGUGGUAUUUGUUUGUUUUUGCGCUUUUAGCCAUAACAAUACCUUCGCUUGCGCAAGAAACAAGCAAAUCUGAAGGGCUUAUCCUAAGUAGCUCUUUUAGGAUGGGAGUUCCAAUGUUAGUGUCCAACUUGUCUUUAUUGGAUGAGCGUGCUCCAUUAGCAAAUAAUCCCGGAGUAGCUGCGUCUGUAGAAUUAAGCUACAAGAAGUUUGCAGAUCGCACAAGUUUAGGUCUGUUAGUAGAUCUAGGUCUCUAUAAUAACAGAAUUGCAAGUUUUAUCUCUGGCAACAACAUUGGGAUAGAGAAUAAUGUGUUUAACACAUUUGCUGGCAUAGUGAUUCGCCAUUAUCAUAUUGAUAAUGAUCGAAUUGAAUUGGCUGCUCCUAUUGCCAUUGGGUAUAUGCAUACUUGGAAUUUCGAAGAUCGGCAAGACCUCGCAGGUGGUGUAAUAUCUAGAACCAAGAGCAUGGGUGCUUUCGCGAUGACAGCAGGAAUGGAACUCGGUUUCAAAGUGAAAGAGGGUAAAUGCAUUGGAGCCAAAGUCGAUUUAUCAGCAGCUGUCGGUAAAAGCAUGGUUGACGCAAGUAAGAAAAUGCGUUGUUGGCUAAGUCCUAGCAUAGGACUUUUCUUUAGACAUAGUUUGUAAACAGAGAAAAAGGCUAAUCAGGGCUAACACCUAAUUUUUCGAAUAUACAAGGGGCUGUGCCAAAAAUGAAUUUGGUCACAGCCCCUUUGUCUUUUAUACUCGGUUGCCUGUGCUGCUGCGGCCGGCAGGACGGCACGGGGGGA .........((((((((((((((((((....(((...............))).)))).))))))))))))))((((....(((((((((((.......))))))))))).((((((((((...(..((..(((((..((((((..((((.(..(.((((..(((.........((((((((((((((((((((......(.....)...)))))))).)))...........((((((((((((........)))))..)))))))..(((.(((((((((((((....)).....))))))))....((((((.....)))))).))).)))....((((((.(((((((.....)))))))..)))))).....)))))))))...((((....))))..)))...(((((...(((..((((..(((..(((.....)))..)))...)))).))))))))...)))))..).))))))))))..)))))..((((((...))))))..........))..)...)))))))))).............))))((((((...(((((((((.(((..((....))........((.(((((((((.(((((((...)))))))(((((((..(((.....)))....)))))))..)))))).))).))....))).................((((((((((((((((......))))).))))))))))))).)))))))...))))))(((((((((((((.....))))..))))))))).... (-250.16) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 576 95 53 193 154 NC_002950:PG0095|5end_DNA_mismatch_repair_protein_114763..114993_NEGATIVE 491 94 59 56 21 NC_002950:PG1234|5end_hypothetical_protein_1310112..1310342_POSITIVE 473 49 1 146 85 NC_002950:PG0133|5end_hypothetical_protein_155764..155994_NEGATIVE 446 42 2 55 5 NC_002950:PG1861|5end_hypothetical_protein_1960057..1960287_NEGATIVE 432 48 6 58 13 NC_002950:PG2174|5end_hypothetical_protein_2282578..2282808_NEGATIVE 432 47 6 131 85 NC_002950:PG1605|5end_aminopeptidase_C_1685179..1685409_POSITIVE 429 45 4 176 133 NC_002950:PG1173|5end_YkgG_family_protein_1252435..1252665_POSITIVE 424 47 4 63 4 NC_002950:PG0434|5end_hypothetical_protein_472513..472743_NEGATIVE 417 48 6 51 4 NC_002950:PG1992|5end_glucose-inhibited_division_protein_A_2081410..2081640_POSITIVE 411 46 2 73 25 NC_002950:PG0714|5end_copper_homeostasis_protein_CutC_768671..768901_NEGATIVE 410 60 11 190 134 NC_002950:PG1979|5end_hypothetical_protein_2067272..2067502_POSITIVE 410 44 2 60 6 NC_002950:PG1787|5end_hypothetical_protein_1875908..1876138_NEGATIVE 406 46 1 193 151 NC_002950:PG1852|5end_exonuclease_1951973..1952203_NEGATIVE 405 99 56 229 189 NC_002950:PG0749|5end_hypothetical_protein_795654..795884_NEGATIVE 403 369 321 180 122 NC_002950:PG0791|5end_adenylate_kinase_843177..843407_NEGATIVE 400 44 6 166 127 NC_002950:PG1966|5end_hypothetical_protein_2056924..2057154_NEGATIVE 396 44 1 59 5 NC_002950:PG0898|5end_hypothetical_protein_963350..963580_NEGATIVE 391 45 1 188 146 NC_002950:PG0329|5end_formiminotransferase-cyclodeaminase-related_protein_364429..364659_NEGATIVE 390 37 8 68 33 NC_002950:PG1666|5end_efflux_transporter,_MFP_component,_RND_family_1748442..1748672_POSITIVE 390 49 3 126 67 NC_002950:PG1006|5end_hypothetical_protein_1066478..1066708_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 473 49 1 127 66 NC_002950:PG0134|3end_magnesium_transporter_155783..155933_NEGATIVE 469 93 56 41 4 NC_002950:PG1950|3end_hypothetical_protein_2040840..2040990_POSITIVE 468 95 52 63 16 NC_002950:PG0034|3end_thioredoxin_42235..42385_NEGATIVE 438 97 56 71 31 NC_002950:PG0506|3end_arginine-specific_cysteine_proteinase_547625..547775_POSITIVE 423 98 58 46 6 NC_002950:PG1297|3end_ribosomal_protein_S1_1377710..1377860_POSITIVE 420 104 62 49 1 NC_002950:PG1972|3end_hemagglutinin_protein_HagB_2061203..2061353_POSITIVE 411 46 2 68 20 NC_002950:PG0715|3end_transporter_768676..768826_NEGATIVE 403 94 58 50 13 NC_002950:PG1754|3end_hypothetical_protein_1842284..1842434_POSITIVE 395 97 56 49 11 NC_002950:PG1809|3end_2-oxoglutarate_oxidoreductase,_gamma_subunit_1905491..1905641_NEGATIVE 391 97 56 68 26 NC_002950:PG2117|3end_30S_ribosomal_protein_S16_2225235..2225385_NEGATIVE 391 96 51 71 24 NC_002950:PG0350|3end_internalin-related_protein_385356..385506_NEGATIVE 391 45 1 139 97 NC_002950:PG0330|3end_DNA-binding_protein,_histone-like_family_364478..364628_NEGATIVE 390 49 3 86 27 NC_002950:PG1007|3end_transcriptional_regulator,_GntR_family_1066518..1066668_NEGATIVE 388 46 3 81 36 NC_002950:PG1622|3end_DNA_topoisomerase_IV_subunit_A_1701418..1701568_NEGATIVE 380 68 24 79 28 NC_002950:PG0032|3end_beta-mannosidase,_putative_37627..37777_NEGATIVE 378 123 81 83 43 NC_002950:PG2029|3end_hypothetical_protein_2129202..2129352_POSITIVE 376 44 1 118 72 NC_002950:PG2214|3end_hypothetical_protein_2325301..2325451_NEGATIVE 372 92 56 49 10 NC_002950:PG0721|3end_NLP/P60_family_protein_774535..774685_POSITIVE 372 239 191 142 100 NC_002950:PG0569|3end_hypothetical_protein_624697..624847_NEGATIVE 371 90 42 61 14 NC_002950:PG1786|3end_hypothetical_protein_1875322..1875472_POSITIVE