Origin IGS: agtaatattcttacagatgatttttattaaaaaggatgataagtatgaaaggtaaatccactcaagtggaaactaaaataactttttcgcgctatgttaaatctttctacaacatctttttggaagactcaaaagggtgaagatcaagaacgttcagaaatgaaaggccaaattcgccatccacattccgcccgacacctgatgctttggagctacccatagataatagccgaccgatggttcgatacagagtttttctcgtcattcgaaaaagacagcctatggaaggtatagagaaaagaggcagcccctccttcaacaaacccagccctgcttcaatcctcgggtgtatagcctgtgcctttgctggaaagaacgacaaaaagacaagagagatagagacaaatagcagggaataagtgtttgttttcattgtcaatcttgatcgatcgataaaaaataaagcccctatagtgtaatagaaggggcttcactgagaatgcttatcgcactctatattattcaaaaggaaaaaaccttacttaaagaagtcttttacagcttcgttcgggaccatttcttcctggaaggtataggcacccgtcttaggagacttgaccatcttgattaccttggagtaggtacggccatcacctttcttaaatgttgcaaccgatttttttgccattgtctgatctcctcttta .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 taaagaggagatcagacaatggcaaaaaaatcggttgcaacatttaagaaaggtgatggccgtacctactccaaggtaatcaagatggtcaagtctcctaagacgggtgcctataccttccaggaagaaatggtcccgaacgaagctgtaaaagacttctttaagtaaggttttttccttttgaataatatagagtgcgataagcattctcagtgaagccccttctattacactataggggctttattttttatcgatcgatcaagattgacaatgaaaacaaacacttattccctgctatttgtctctatctctcttgtctttttgtcgttctttccagcaaaggcacaggctatacacccgaggattgaagcagggctgggtttgttgaaggaggggctgcctcttttctctataccttccataggctgtctttttcgaatgacgagaaaaactctgtatcgaaccatcggtcggctattatctatgggtagctccaaagcatcaggtgtcgggcggaatgtggatggcgaatttggcctttcatttctgaacgttcttgatcttcacccttttgagtcttccaaaaagatgttgtagaaagatttaacatagcgcgaaaaagttattttagtttccacttgagtggatttacctttcatacttatcatcctttttaataaaaatcatctgtaagaatattact Mask Tandem Repeat Region ================================================ agtaatattcttacagatgatttttattaaaaaggatgataagtatgaaaggtaaatccactcaagtggaaactaaaataactttttcgcgctatgttaaatctttctacaacatctttttggaagactcaaaagggtgaagatcaagaacgttcagaaatgaaaggccaaattcgccatccacattccgcccgacacctgatgctttggagctacccatagataatagccgaccgatggttcgatacagagtttttctcgtcattcgaaaaagacagcctatggaaggtatagagaaaagaggcagcccctccttcaacaaacccagccctgcttcaatcctcgggtgtatagcctgtgcctttgctggaaagaacgacaaaaagacaagagagatagagacaaatagcagggaataagtgtttgttttcattgtcaatcttgatcgatcgataaaaaataaagcccctatagtgtaatagaaggggcttcactgagaatgcttatcgcactctatattattcaaaaggaaaaaaccttacttaaagaagtcttttacagcttcgttcgggaccatttcttcctggaaggtataggcacccgtcttaggagacttgaccatcttgattaccttggagtaggtacggccatcacctttcttaaatgttgcaaccgatttttttgccattgtctgatctcctcttta Find is-nt database================================================ Query_seq: PG1956:PG1959|PG1956:PG1959:4-hydroxybutyrate CoA-transferase:ribosomal protein L33:<-<-:2047601..2048306 706 agtaatattcttacagatgatttttattaaaaaggatgataagtatgaaaggtaaatccactcaagtggaaactaaaataactttttcgcgctatgttaaatctttctacaacatctttttggaagactcaaaagggtgaagatcaagaacgttcagaaatgaaaggccaaattcgccatccacattccgcccgacacctgatgctttggagctacccatagataatagccgaccgatggttcgatacagagtttttctcgtcattcgaaaaagacagcctatggaaggtatagagaaaagaggcagcccctccttcaacaaacccagccctgcttcaatcctcgggtgtatagcctgtgcctttgctggaaagaacgacaaaaagacaagagagatagagacaaatagcagggaataagtgtttgttttcattgtcaatcttgatcgatcgataaaaaataaagcccctatagtgtaatagaaggggcttcactgagaatgcttatcgcactctatattattcaaaaggaaaaaaccttacttaaagaagtcttttacagcttcgttcgggaccatttcttcctggaaggtataggcacccgtcttaggagacttgaccatcttgattaccttggagtaggtacggccatcacctttcttaaatgttgcaaccgatttttttgccattgtctgatctcctcttta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PG1956:PG1959|PG1956:PG1959:4-hydroxybutyrate CoA-transferase:ribosomal protein L33:<-<-:2047601..2048306 706 agtaatattcttacagatgatttttattaaaaaggatgataagtatgaaaggtaaatccactcaagtggaaactaaaataactttttcgcgctatgttaaatctttctacaacatctttttggaagactcaaaagggtgaagatcaagaacgttcagaaatgaaaggccaaattcgccatccacattccgcccgacacctgatgctttggagctacccatagataatagccgaccgatggttcgatacagagtttttctcgtcattcgaaaaagacagcctatggaaggtatagagaaaagaggcagcccctccttcaacaaacccagccctgcttcaatcctcgggtgtatagcctgtgcctttgctggaaagaacgacaaaaagacaagagagatagagacaaatagcagggaataagtgtttgttttcattgtcaatcttgatcgatcgataaaaaataaagcccctatagtgtaatagaaggggcttcactgagaatgcttatcgcactctatattattcaaaaggaaaaaaccttacttaaagaagtcttttacagcttcgttcgggaccatttcttcctggaaggtataggcacccgtcttaggagacttgaccatcttgattaccttggagtaggtacggccatcacctttcttaaatgttgcaaccgatttttttgccattgtctgatctcctcttta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PG1956:PG1959|PG1956:PG1959:4-hydroxybutyrate CoA-transferase:ribosomal protein L33:<-<-:2047601..2048306 706 agtaatattcttacagatgatttttattaaaaaggatgataagtatgaaaggtaaatccactcaagtggaaactaaaataactttttcgcgctatgttaaatctttctacaacatctttttggaagactcaaaagggtgaagatcaagaacgttcagaaatgaaaggccaaattcgccatccacattccgcccgacacctgatgctttggagctacccatagataatagccgaccgatggttcgatacagagtttttctcgtcattcgaaaaagacagcctatggaaggtatagagaaaagaggcagcccctccttcaacaaacccagccctgcttcaatcctcgggtgtatagcctgtgcctttgctggaaagaacgacaaaaagacaagagagatagagacaaatagcagggaataagtgtttgttttcattgtcaatcttgatcgatcgataaaaaataaagcccctatagtgtaatagaaggggcttcactgagaatgcttatcgcactctatattattcaaaaggaaaaaaccttacttaaagaagtcttttacagcttcgttcgggaccatttcttcctggaaggtataggcacccgtcttaggagacttgaccatcttgattaccttggagtaggtacggccatcacctttcttaaatgttgcaaccgatttttttgccattgtctgatctcctcttta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 4 Min: 542 Max: 688 Len: 147 Subject: UniRef90_A3HYB7 Cluster: Hypothetical protein; n=1; Algoriphagus sp. PR1|Rep: Hypothetical protein - Algoriphagus sp. PR1 HSP 1 e-value: 9.0E-10 bit: 66.2 Len: 138 Query Start:551 Query End:688 Subject Strand: null Subject Start: 1 Subject End: 46 ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M A K K S V A T F K K G D G R T Y S K V I K M V K S P K T G A Y T F Q E E M V P N E A V K D .................. ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M A K K V V A T L K K K D G V T Y A K V I K A V K S D K T G A Y T F R E E M V P S T L V Q E .................. Subject: UniRef90_A1ZLE3 Cluster: Hypothetical protein; n=1; Microscilla marina ATCC 23134|Rep: Hypothetical protein - Microscilla marina ATCC 23134 HSP 1 e-value: 4.0E-8 bit: 60.8 Len: 147 Query Start:542 Query End:688 Subject Strand: null Subject Start: 1 Subject End: 49 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M A K K S V A T F K K G D G R T Y S K V I K M V K S P K T G A Y T F Q E E M V P N E A V K D F F K .................. ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M A K K T V A T L K T G E G A K F V K I V K A V K S A K T G A Y T F K E E M V P V G E A K E A L K .................. Subject: UniRef90_A3XLQ8 Cluster: Hypothetical protein; n=1; Leeuwenhoekiella blandensis MED217|Rep: Hypothetical protein - Leeuwenhoekiella blandensis MED217 HSP 1 e-value: 3.0E-7 bit: 57.8 Len: 141 Query Start:548 Query End:688 Subject Strand: null Subject Start: 1 Subject End: 46 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M A K K S V A T F K K G D G R T Y S K V I K M V K S P K T G A Y T F Q E E M V P N E A V K D F .................. ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M A K K S V A T L Q T G S K R L - T K A I K M V K S P K T G A Y T F V E A V M P P E A V G E F .................. Subject: UniRef90_A0M3L2 Cluster: Hypothetical protein; n=1; Gramella forsetii KT0803|Rep: Hypothetical protein - Gramella forsetii (strain KT0803) HSP 1 e-value: 8.0E-6 bit: 53.1 Len: 147 Query Start:542 Query End:688 Subject Strand: null Subject Start: 1 Subject End: 48 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M A K K S V A T F K K G D G R T Y S K V I K M V K S P K T G A Y T F Q E E M V P N E A V K D F F K .................. ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M A K K S V A S I Q T G S K R L - T K A I K M V K S D K T G A Y T F V E Q I M A P E D V N D F L K .................. agtaatattcttacagatgatttttattaaaaaggatgataagtatgaaaggtaaatccactcaagtggaaactaaaataactttttcgcgctatgttaaatctttctacaacatctttttggaagactcaaaagggtgaagatcaagaacgttcagaaatgaaaggccaaattcgccatccacattccgcccgacacctgatgctttggagctacccatagataatagccgaccgatggttcgatacagagtttttctcgtcattcgaaaaagacagcctatggaaggtatagagaaaagaggcagcccctccttcaacaaacccagccctgcttcaatcctcgggtgtatagcctgtgcctttgctggaaagaacgacaaaaagacaagagagatagagacaaatagcagggaataagtgtttgttttcattgtcaatcttgatcgatcgataaaaaataaagcccctatagtgtaatagaaggggcttcactgagaatgcttatcgcactctatattattcaaaaggaaaaaaccttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtctgatctcctcttta Predict ORF larger than 30AA ================================================ Protein_Len: 34 Strand: + Start: 36 End: 137 ................................... M I S M K G K S T Q V E T K I T F S R Y V K S F Y N I F L E D S K G ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 42 Strand: + Start: 94 End: 219 ............................................................................................. M L N L S T T S F W K T Q K G E D Q E R S E M K G Q I R H P H S A R H L M L W S Y P ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 54 Strand: + Start: 245 End: 406 .................................................................................................................................................................................................................................................... M Q S F S R H S K K T A Y G R Y R E K R Q P L L Q Q T Q P C F N P R V Y S L C L C W K E R Q K D K R D R D K ............................................................................................................................................................................................................................................................................................................ Protein_Len: 60 Strand: + Start: 207 End: 416 .............................................................................................................................................................................................................. M E L P I D N S R P M V R Y R V F L V I R K R Q P M E G I E K R G S P S F N K P S P A S I L G C I A C A F A G K N D K K .................................................................................................................................................................................................................................................................................................. Protein_Len: 60 Strand: + Start: 479 End: 706 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M E G A S L R M L I A L Y I I Q K E K T L L K E V F Y S F V R D H F F L E G I G T R L R R L D H L D Y L G V G T A I T F Protein_Len: 49 Strand: - Start: 542 End: 688 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. K F F D K V A E N P V M E E Q F T Y A G T K P S K V M K I V K S Y T R G D G K K F T A V S K K A M .................. Protein_Len: 52 Strand: - Start: 339 End: 494 .................................................................................................................................................................................................................................................................................................................................................. D E P T Y G T G K S S L V V F L C S L Y L C I A P F L H K N E N D I K I S R Y F I F G R Y H L L L P K M .................................................................................................................................................................................................................... Protein_Len: 33 Strand: - Start: 319 End: 417 .............................................................................................................................................................................................................................................................................................................................. C V W G Q K L G R T Y L R H R Q Q F S R C F S L L S L S L Y C P M ................................................................................................................................................................................................................................................................................................. Protein_Len: 30 Strand: - Start: 157 End: 246 ............................................................................................................................................................ F H F A L N A M W M G G S V Q H K P A V W L Y Y G V S P E M ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 60 Strand: - Start: 110 End: 472 ............................................................................................................. S F L P L G E K L L G L G A E I R P H I A Q A K A P F F S L F V L S I S V F L L S Y T N T K M T L R S R D I F F L A G M .......................................................................................................................................................................................................................................... agtaatattcttacagatgatttttattaaaaaggatgataagtatgaaaggtaaatccactcaagtggaaactaaaataactttttcgcgctatgttaaatctttctacaacatctttttggaagactcaaaagggtgaagatcaagaacgttcagaaatgaaaggccaaattcgccatccacattccgcccgacacctgatgctttggagctacccatagataatagccgaccgatggttcgatacagagtttttctcgtcattcgaaaaagacagcctatggaaggtatagagaaaagaggcagcccctccttcaacaaacccagccctgcttcaatcctcgggtgtatagcctgtgcctttgctggaaagaacgacaaaaagacaagagagatagagacaaatagcagggaataagtgtttgttttcattgtcaatcttgatcgatcgataaaaaataaagcccctatagtgtaatagaaggggcttcactgagaatgcttatcgcactctatattattcaaaaggaaaaaaccttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtctgatctcctcttta Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ agtaatattcttacagatgatttttattaaaaaggatgataagtatgaaaggtaaatccactcaagtggaaactaaaataactttttcgcgctatgttaaatctttctacaacatctttttggaagactcaaaagggtgaagatcaagaacgttcagaaatgaaaggccaaattcgccatccacattccgcccgacacctgatgctttggagctacccatagataatagccgaccgatggttcgatacagagtttttctcgtcattcgaaaaagacagcctatggaaggtatagagaaaagaggcagcccctccttcaacaaacccagccctgcttcaatcctcgggtgtatagcctgtgcctttgctggaaagaacgacaaaaagacaagagagatagagacaaatagcagggaataagtgtttgttttcattgtcaatcttgatcgatcgataaaaaataaagcccctatagtgtaatagaaggggcttcactgagaatgcttatcgcactctatattattcaaaaggaaaaaaccttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtctgatctcctcttta Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 71 HP_score: -4.8 Tail_Score: -4.62471 Start: 301 End: 313 Full_Region: ctgggtttgttgaag gagg ggctg cctc ttttctctatacctt ............................................................................................................................................................................................................................................................................................................gaggggctgcctc......................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 75 HP_score: -2.8 Tail_Score: -5.28176 Start: 461 End: 493 Full_Region: gataagcattctcag tgaagcccct tctattacactat aggggcttta ttttttatcgatcga ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................tgaagccccttctattacactataggggcttta..................................................................................................................................................................................................................... Find igs database================================================ Query_seq: PG1956:PG1959|PG1956:PG1959:4-hydroxybutyrate CoA-transferase:ribosomal protein L33:<-<-:2047601..2048306 706 agtaatattcttacagatgatttttattaaaaaggatgataagtatgaaaggtaaatccactcaagtggaaactaaaataactttttcgcgctatgttaaatctttctacaacatctttttggaagactcaaaagggtgaagatcaagaacgttcagaaatgaaaggccaaattcgccatccacattccgcccgacacctgatgctttggagctacccatagataatagccgaccgatggttcgatacagagtttttctcgtcattcgaaaaagacagcctatggaaggtatagagaaaagaggcagcccctccttcaacaaacccagccctgcttcaatcctcgggtgtatagcctgtgcctttgctggaaagaacgacaaaaagacaagagagatagagacaaatagcagggaataagtgtttgttttcattgtcaatcttgatcgatcgataaaaaataaagcccctatagtgtaatagaaggggcttcactgagaatgcttatcgcactctatattattcaaaaggaaaaaaccttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtctgatctcctcttta Intra-Species Hit: Count: 1 Min: 1 Max: 541 Len: 541 Subject: NC_002950_PG1956_PG1959|4-hydroxybutyrate CoA-transferase:ribosomal protein L33|NEGATIVE:NEGATIVE|[2047601,2048306]|706 HSP 1 e-value: 0.0 bit: 1072.0 Len: 541 Query Start:1 Query End:541 Subject Strand: POSITIVE Subject Start: 1 Subject End: 541 agtaatattcttacagatgatttttattaaaaaggatgataagtatgaaaggtaaatccactcaagtggaaactaaaataactttttcgcgctatgttaaatctttctacaacatctttttggaagactcaaaagggtgaagatcaagaacgttcagaaatgaaaggccaaattcgccatccacattccgcccgacacctgatgctttggagctacccatagataatagccgaccgatggttcgatacagagtttttctcgtcattcgaaaaagacagcctatggaaggtatagagaaaagaggcagcccctccttcaacaaacccagccctgcttcaatcctcgggtgtatagcctgtgcctttgctggaaagaacgacaaaaagacaagagagatagagacaaatagcagggaataagtgtttgttttcattgtcaatcttgatcgatcgataaaaaataaagcccctatagtgtaatagaaggggcttcactgagaatgcttatcgcactctatattattcaaaaggaaaaaacctta..................................................................................................................................................................... agtaatattcttacagatgatttttattaaaaaggatgataagtatgaaaggtaaatccactcaagtggaaactaaaataactttttcgcgctatgttaaatctttctacaacatctttttggaagactcaaaagggtgaagatcaagaacgttcagaaatgaaaggccaaattcgccatccacattccgcccgacacctgatgctttggagctacccatagataatagccgaccgatggttcgatacagagtttttctcgtcattcgaaaaagacagcctatggaaggtatagagaaaagaggcagcccctccttcaacaaacccagccctgcttcaatcctcgggtgtatagcctgtgcctttgctggaaagaacgacaaaaagacaagagagatagagacaaatagcagggaataagtgtttgttttcattgtcaatcttgatcgatcgataaaaaataaagcccctatagtgtaatagaaggggcttcactgagaatgcttatcgcactctatattattcaaaaggaaaaaacctta..................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AGUAAUAUUCUUACAGAUGAUUUUUAUUAAAAAGGAUGAUAAGUAUGAAAGGUAAAUCCACUCAAGUGGAAACUAAAAUAACUUUUUCGCGCUAUGUUAAAUCUUUCUACAACAUCUUUUUGGAAGACUCAAAAGGGUGAAGAUCAAGAACGUUCAGAAAUGAAAGGCCAAAUUCGCCAUCCACAUUCCGCCCGACACCUGAUGCUUUGGAGCUACCCAUAGAUAAUAGCCGACCGAUGGUUCGAUACAGAGUUUUUCUCGUCAUUCGAAAAAGACAGCCUAUGGAAGGUAUAGAGAAAAGAGGCAGCCCCUCCUUCAACAAACCCAGCCCUGCUUCAAUCCUCGGGUGUAUAGCCUGUGCCUUUGCUGGAAAGAACGACAAAAAGACAAGAGAGAUAGAGACAAAUAGCAGGGAAUAAGUGUUUGUUUUCAUUGUCAAUCUUGAUCGAUCGAUAAAAAAUAAAGCCCCUAUAGUGUAAUAGAAGGGGCUUCACUGAGAAUGCUUAUCGCACUCUAUAUUAUUCAAAAGGAAAAAACCUUA ((((((((.....(((....((((((((..............(((.(((((((...(((((....)))))........((((.............)))).))))))))))..(((((((((((.....)))))))))))..((((((((.(((((..........(((.......))).(((((((...((...((((((((.(..(((((((...((((((........(((((...)).))).......((((((.(((.....))).))))))...))))))..(((.....(((..((((.....)))).))).....))).......)))))))..)))))))))...))..))).......))))..))))).......(((((..((((((((.((................)).))))))))..)))))..))))))))....))))))))...((((((((.((......))..))))))))..))).((.(((.....))).)).))))))))...((((......)))). (-137.72) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAAGGUUUUUUCCUUUUGAAUAAUAUAGAGUGCGAUAAGCAUUCUCAGUGAAGCCCCUUCUAUUACACUAUAGGGGCUUUAUUUUUUAUCGAUCGAUCAAGAUUGACAAUGAAAACAAACACUUAUUCCCUGCUAUUUGUCUCUAUCUCUCUUGUCUUUUUGUCGUUCUUUCCAGCAAAGGCACAGGCUAUACACCCGAGGAUUGAAGCAGGGCUGGGUUUGUUGAAGGAGGGGCUGCCUCUUUUCUCUAUACCUUCCAUAGGCUGUCUUUUUCGAAUGACGAGAAAAACUCUGUAUCGAACCAUCGGUCGGCUAUUAUCUAUGGGUAGCUCCAAAGCAUCAGGUGUCGGGCGGAAUGUGGAUGGCGAAUUUGGCCUUUCAUUUCUGAACGUUCUUGAUCUUCACCCUUUUGAGUCUUCCAAAAAGAUGUUGUAGAAAGAUUUAACAUAGCGCGAAAAAGUUAUUUUAGUUUCCACUUGAGUGGAUUUACCUUUCAUACUUAUCAUCCUUUUUAAUAAAAAUCAUCUGUAAGAAUAUUACU ...(((((((...((((((.......(((((((.....))))))).((((((((((((.............)))))))))))).............))))))..(((......(((((((.((....(((((((.....((((.......(((((.(((((((.(.......).))))))).)))))..........)))).....)))))))..)))))))))(((((.((((((((((.(((((((....(((.....)))..(((..........))))))))))...(((.(((((....))))))))...........)))))))))).(((.((((((...((..(((((.(((((.(((.......))).))))))))))..))..)))))))))...)))))...)))....(((((((((..((((((((..((((.(((((........))))).))))..(((((....))))).....))))).)))....))).))))))...)))))))....((((.....)))). (-145.75) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 797 130 81 221 172 NC_002950:PG1956|5end_4-hydroxybutyrate_CoA-transferase_2047510..2047740_NEGATIVE 415 370 321 101 39 NC_002950:PG0882|5end_hypothetical_protein_944195..944425_POSITIVE 412 220 176 91 53 NC_002950:PG0268|5end_tRNA_(5-methylaminomethyl-2-thiouridylate)-methyltransferase_300898..301128_POSITIVE 409 217 173 207 156 NC_002950:PG1769|5end_hypothetical_protein_1856607..1856837_POSITIVE 390 369 325 165 117 NC_002950:PG0147|5end_hypothetical_protein_169667..169897_NEGATIVE 389 227 186 70 25 NC_002950:PG1030|5end_hypothetical_protein_1091400..1091630_POSITIVE 386 236 192 219 168 NC_002950:PG0744|5end_RNA_methyltransferase,_TrmH_family_791897..792127_NEGATIVE 382 346 303 51 5 NC_002950:PG1017|5end_pyruvate_phosphate_dikinase_1076138..1076368_POSITIVE 379 368 324 212 152 NC_002950:PG1185|5end_hypothetical_protein_1267752..1267982_NEGATIVE 367 334 293 55 13 NC_002950:PG0671|5end_iron_compound_ABC_transporter,_permease_protein_721888..722118_POSITIVE 365 314 277 64 26 NC_002950:PG1576|5end_L-aspartate_oxidase_1653016..1653246_POSITIVE 363 346 302 39 1 NC_002950:PG1861|5end_hypothetical_protein_1960057..1960287_NEGATIVE 363 370 323 69 6 NC_002950:PG0347|5end_UDP-glucose_4-epimerase_381274..381504_POSITIVE 361 381 341 77 38 NC_002950:PG0665|5end_beta-galactosidase_711827..712057_POSITIVE 357 372 337 39 10 NC_002950:PG0909|5end_hypothetical_protein_973039..973269_NEGATIVE 355 369 328 213 167 NC_002950:PG1814|5end_DNA_primase_1910627..1910857_NEGATIVE 350 369 325 76 30 NC_002950:PG1398|5end_hypothetical_protein_1480694..1480924_POSITIVE 348 203 166 117 72 NC_002950:PG0753|5end_protease_798301..798531_POSITIVE 347 209 165 229 196 NC_002950:PG1498|5end_hypothetical_protein_1574656..1574886_POSITIVE 347 370 328 217 176 NC_002950:PG0221|5end_hypothetical_protein_255834..256064_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 412 220 176 86 48 NC_002950:PG0267|3end_arginyl-tRNA_synthetase_300973..301123_POSITIVE 386 236 192 134 83 NC_002950:PG0745|3end_lactoylglutathione_lyase,_putative_791982..792132_NEGATIVE 367 334 293 58 16 NC_002950:PG0670|3end_lipoprotein,_putative_721971..722121_POSITIVE 353 367 326 147 108 NC_002950:PG0393|3end_ribosomal_protein_L7/L12_425017..425167_POSITIVE 352 343 303 89 41 NC_002950:PG0507|3end_hypothetical_protein_548190..548340_POSITIVE 351 370 326 66 20 NC_002950:PG1975|3end_hemagglutinin_protein_HagC_2064350..2064500_POSITIVE 351 370 326 72 26 NC_002950:PG1972|3end_hemagglutinin_protein_HagB_2061203..2061353_POSITIVE 348 203 166 133 88 NC_002950:PG0752|3end_uracil_phosphoribosyltransferase_798397..798547_POSITIVE 348 217 175 124 74 NC_002950:PG0344|3end_purple_acid_phosphatase_378543..378693_NEGATIVE 347 209 165 128 95 NC_002950:PG1497|3end_DNA-binding_protein,_histone-like_family_1574635..1574785_POSITIVE 347 370 328 138 97 NC_002950:PG0222|3end_DNA-binding_protein,_histone-like_family_255913..256063_NEGATIVE 344 213 173 144 98 NC_002950:PG1334|3end_band_7/Mec-2_family_protein_1415422..1415572_NEGATIVE 336 330 289 55 15 NC_002950:PG1055|3end_thiol_protease_1121202..1121352_NEGATIVE 333 369 321 97 39 NC_002950:PG0157|3end_regulatory_protein_RecX_180271..180421_POSITIVE 330 357 311 60 5 NC_002950:PG1985|3end_CRISPR-associated_TM1792_family_protein_2073879..2074029_NEGATIVE 328 369 325 55 10 NC_002950:PG0144|3end_hypothetical_protein_166643..166793_NEGATIVE 326 370 328 151 116 NC_002950:PG1198|3end_hypothetical_protein_1276969..1277119_POSITIVE 322 348 303 150 96 NC_002950:PG0020|3end_transcriptional_regulator,_MarR_family_24166..24316_POSITIVE 321 270 228 68 18 NC_002950:PG0355|3end_hypothetical_protein_390707..390857_POSITIVE 320 380 331 78 33 NC_002950:PG1028|3end_TPR_domain_protein_1091096..1091246_POSITIVE