Origin IGS: ttcttctttctttaaaactatgattataattatctctttcctaatctattacactgccaactatacgagcagtggcgcaaaggtacatatattttcccaatccacaacagtccccgcagcttttttttcacggcaacgctctaatactcaatagtatcaaccgacatctataggccgaactgttccgcccgagcgagagatccgaaaaggtggatgcgcaccgaaaagaaagagaatacaaaacagcccgaaaaagtgagatacagcgtgcagccacagaaaagaaacgcactgcatatattcacagaaaagaaacgcactgcatatattaatgtacgcgcgcgagagatgctgagggcagcactattcagtccaaagagagaaaacggaacggaaaaggacaaccatccagcaaaccgtttacgcgccacaattttctgtttcgatgctccgcaaaacgtggcgcgggaactttttcgttttggttcgggaagtaaaaaattctcgcgccacgaggaaaaaattctcataagacttttcccgaaaacacgcgccgcaatcagagcaattatggttcgagaaaatcagatcggaatatatccgcccaagagcgagaggggtag .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 ctacccctctcgctcttgggcggatatattccgatctgattttctcgaaccataattgctctgattgcggcgcgtgttttcgggaaaagtcttatgagaattttttcctcgtggcgcgagaattttttacttcccgaaccaaaacgaaaaagttcccgcgccacgttttgcggagcatcgaaacagaaaattgtggcgcgtaaacggtttgctggatggttgtccttttccgttccgttttctctctttggactgaatagtgctgccctcagcatctctcgcgcgcgtacattaatatatgcagtgcgtttcttttctgtgaatatatgcagtgcgtttcttttctgtggctgcacgctgtatctcactttttcgggctgttttgtattctctttcttttcggtgcgcatccaccttttcggatctctcgctcgggcggaacagttcggcctatagatgtcggttgatactattgagtattagagcgttgccgtgaaaaaaaagctgcggggactgttgtggattgggaaaatatatgtacctttgcgccactgctcgtatagttggcagtgtaatagattaggaaagagataattataatcatagttttaaagaaagaagaa Mask Tandem Repeat Region ================================================ ttcttctttctttaaaactatgattataattatctctttcctaatctattacactgccaactatacgagcagtggcgcaaaggtacatatattttcccaatccacaacagtccccgcagcttttttttcacggcaacgctctaatactcaatagtatcaaccgacatctataggccgaactgttccgcccgagcgagagatccgaaaaggtggatgcgcaccgaaaagaaagagaatacaaaacagcccgaaaaagtgagatacagcgtgcagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatgtacgcgcgcgagagatgctgagggcagcactattcagtccaaagagagaaaacggaacggaaaaggacaaccatccagcaaaccgtttacgcgccacaattttctgtttcgatgctccgcaaaacgtggcgcgggaactttttcgttttggttcgggaagtaaaaaattctcgcgccacgaggaaaaaattctcataagacttttcccgaaaacacgcgccgcaatcagagcaattatggttcgagaaaatcagatcggaatatatccgcccaagagcgagaggggtag Find is-nt database================================================ Query_seq: PG1942:PG1943|PG1942:PG1943:30S ribosomal protein S12:hypothetical protein:<-<-:2028441..2029063 623 ttcttctttctttaaaactatgattataattatctctttcctaatctattacactgccaactatacgagcagtggcgcaaaggtacatatattttcccaatccacaacagtccccgcagcttttttttcacggcaacgctctaatactcaatagtatcaaccgacatctataggccgaactgttccgcccgagcgagagatccgaaaaggtggatgcgcaccgaaaagaaagagaatacaaaacagcccgaaaaagtgagatacagcgtgcagccacagaaaagaaacgcactgcatatattcacagaaaagaaacgcactgcatatattaatgtacgcgcgcgagagatgctgagggcagcactattcagtccaaagagagaaaacggaacggaaaaggacaaccatccagcaaaccgtttacgcgccacaattttctgtttcgatgctccgcaaaacgtggcgcgggaactttttcgttttggttcgggaagtaaaaaattctcgcgccacgaggaaaaaattctcataagacttttcccgaaaacacgcgccgcaatcagagcaattatggttcgagaaaatcagatcggaatatatccgcccaagagcgagaggggtag Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PG1942:PG1943|PG1942:PG1943:30S ribosomal protein S12:hypothetical protein:<-<-:2028441..2029063 623 ttcttctttctttaaaactatgattataattatctctttcctaatctattacactgccaactatacgagcagtggcgcaaaggtacatatattttcccaatccacaacagtccccgcagcttttttttcacggcaacgctctaatactcaatagtatcaaccgacatctataggccgaactgttccgcccgagcgagagatccgaaaaggtggatgcgcaccgaaaagaaagagaatacaaaacagcccgaaaaagtgagatacagcgtgcagccacagaaaagaaacgcactgcatatattcacagaaaagaaacgcactgcatatattaatgtacgcgcgcgagagatgctgagggcagcactattcagtccaaagagagaaaacggaacggaaaaggacaaccatccagcaaaccgtttacgcgccacaattttctgtttcgatgctccgcaaaacgtggcgcgggaactttttcgttttggttcgggaagtaaaaaattctcgcgccacgaggaaaaaattctcataagacttttcccgaaaacacgcgccgcaatcagagcaattatggttcgagaaaatcagatcggaatatatccgcccaagagcgagaggggtag Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PG1942:PG1943|PG1942:PG1943:30S ribosomal protein S12:hypothetical protein:<-<-:2028441..2029063 623 ttcttctttctttaaaactatgattataattatctctttcctaatctattacactgccaactatacgagcagtggcgcaaaggtacatatattttcccaatccacaacagtccccgcagcttttttttcacggcaacgctctaatactcaatagtatcaaccgacatctataggccgaactgttccgcccgagcgagagatccgaaaaggtggatgcgcaccgaaaagaaagagaatacaaaacagcccgaaaaagtgagatacagcgtgcagccacagaaaagaaacgcactgcatatattcacagaaaagaaacgcactgcatatattaatgtacgcgcgcgagagatgctgagggcagcactattcagtccaaagagagaaaacggaacggaaaaggacaaccatccagcaaaccgtttacgcgccacaattttctgtttcgatgctccgcaaaacgtggcgcgggaactttttcgttttggttcgggaagtaaaaaattctcgcgccacgaggaaaaaattctcataagacttttcccgaaaacacgcgccgcaatcagagcaattatggttcgagaaaatcagatcggaatatatccgcccaagagcgagaggggtag Intra-Species Hit: Count: 0 Inter-species Hit: Count: 3 Min: 418 Max: 579 Len: 162 Subject: UniRef90_Q7MTB1 Cluster: Hypothetical protein; n=1; Porphyromonas gingivalis|Rep: Hypothetical protein - Porphyromonas gingivalis (Bacteroides gingivalis) HSP 1 e-value: 4.0E-8 bit: 60.5 Len: 132 Query Start:446 Query End:577 Subject Strand: null Subject Start: 1 Subject End: 44 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................. M L R K T W R G N F F V L V R E V K N S R A T R K K F S * D F S R K H A P Q S E Q L W F .............................................. ............................................................................................................................................................................................................................................................................................................................................................................................................................................................. M L P K T W R E N F F V L V R E V K N L R A T A K K I S R H F F R K Y E P Q P G V F W F .............................................. Subject: UniRef90_Q7MUH1 Cluster: Hypothetical protein; n=1; Porphyromonas gingivalis|Rep: Hypothetical protein - Porphyromonas gingivalis (Bacteroides gingivalis) HSP 1 e-value: 1.0E-7 bit: 58.9 Len: 159 Query Start:421 Query End:579 Subject Strand: null Subject Start: 9 Subject End: 61 .................................................................................................................................................................................................................................................................................................................................................................................................................................... L R A T I F C F D A P Q N V A R E L F R F G S G S K K F S R H E E K I L I R L F P K T R A A I R A I M V R ............................................ .................................................................................................................................................................................................................................................................................................................................................................................................................................... L G S K I F P F A T P Q N A V R K L F Y F G V G S K K F S R H N E K I L A P L F Q G I R A T I G A F P V R ............................................ Subject: UniRef90_Q7MU89 Cluster: Hypothetical protein; n=1; Porphyromonas gingivalis|Rep: Hypothetical protein - Porphyromonas gingivalis (Bacteroides gingivalis) HSP 1 e-value: 1.0E-6 bit: 55.8 Len: 162 Query Start:418 Query End:579 Subject Strand: null Subject Start: 13 Subject End: 66 ................................................................................................................................................................................................................................................................................................................................................................................................................................. S N H N C S D C G A C F R E K S Y E N F F L V A R E F F T S R T K T K K F P R H V L R S I E T E N C G A * T ............................................ ................................................................................................................................................................................................................................................................................................................................................................................................................................. T N Q K S S D C G S C F L K K W R E I F F V L A C K F F N C R A K T K K F S R H V F V G N K C E N S G T Q T ............................................ ttcttctttctttaaaactatgattataattatctctttcctaatctattacactgccaactatacgagcagtggcgcaaaggtacatatattttcccaatccacaacagtccccgcagcttttttttcacggcaacgctctaatactcaatagtatcaaccgacatctataggccgaactgttccgcccgagcgagagatccgaaaaggtggatgcgcaccgaaaagaaagagaatacaaaacagcccgaaaaagtgagatacagcgtgcagccacagaaaagaaacgcactgcatatattcacagaaaagaaacgcactgcatatattaatgtacgcgcgcgagagatgctgagggcagcactattcagtccaaagagagaaaacggaacggaaaaggacaaccatccagcaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaaaatcagatcggaatatatccgcccaagagcgagaggggtag Predict ORF larger than 30AA ================================================ Protein_Len: 44 Strand: + Start: 20 End: 151 ................... M I I I I S F L I Y Y T A N Y T S S G A K V H I F S Q S T T V P A A F F S R Q R S N T Q ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 41 Strand: + Start: 48 End: 170 ............................................... M T L P T I R A V A Q R Y I Y F P N P Q Q S P Q L F F H G N A L I L N S I N R H L ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 50 Strand: + Start: 180 End: 329 ................................................................................................................................................................................... M F R P S E R S E K V D A H R K E R E Y K T A R K S E I Q R A A T E K K R T A Y I H R K E T H C I Y ...................................................................................................................................................................................................................................................................................................... Protein_Len: 43 Strand: + Start: 366 End: 494 ............................................................................................................................................................................................................................................................................................................................................................................. M Q S K E R K R N G K G Q P S S K P F T R H N F L F R C S A K R G A G T F S F W F G K ................................................................................................................................. Protein_Len: 41 Strand: + Start: 407 End: 529 ...................................................................................................................................................................................................................................................................................................................................................................................................................... M Q Q T V Y A P Q F S V S M L R K T W R G N F F V L V R E V K N S R A T R K K F S .............................................................................................. Protein_Len: 60 Strand: + Start: 151 End: 621 ...................................................................................................................................................... M V S T D I Y R P N C S A R A R D P K R W M R T E K K E N T K Q P E K V R Y S V Q P Q K R N A L H I F T E K K R T A Y I .. Protein_Len: 41 Strand: + Start: 501 End: 620 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M L A P R G K N S H K T F P E N T R R N Q S N Y G S R K S D R N I S A Q E R E G * ... Protein_Len: 59 Strand: - Start: 424 End: 600 ....................................................................................................................................................................................................................................................................................................................................................................................................................................... A G C N E T E I S R L V H R P F K K T K T R S T F F E R A V L F F N E Y S K E R F C A G C D S C N H N S F I L D S Y M ....................... Protein_Len: 44 Strand: - Start: 371 End: 502 .................................................................................................................................................................................................................................................................................................................................................................................. D L S L F R F P F P C G D L L G N V R W L K R N R H E A F R P A P V K E N Q N P F Y F M ......................................................................................................................... Protein_Len: 60 Strand: - Start: 171 End: 572 .......................................................................................................................................................................... S F S L W G A F R K R A V I K Q K S A G C F T A R S S K R K P E P L L F N E R W S S F I R M L S K G F V R A A I L A I M ................................................... Protein_Len: 58 Strand: - Start: 160 End: 333 ............................................................................................................................................................... G V D I P R V T G G S R S I R F P P H A G F L F L I C F L G F F H S V A H L W L F S V C Q M Y E C F L F A S C I N M .................................................................................................................................................................................................................................................................................................. Protein_Len: 57 Strand: - Start: 131 End: 301 .................................................................................................................................. P L A R I S L L I L R C R Y A S S N R G L S L D S F T S A C R F S L S Y L V A R F L S I C R A A V S F F R V A Y M .................................................................................................................................................................................................................................................................................................................................. Protein_Len: 33 Strand: - Start: 33 End: 131 ................................ R K G L R N C Q W S Y S C H R L P V Y I K G I W L L G R L K K K M ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ ttcttctttctttaaaactatgattataattatctctttcctaatctattacactgccaactatacgagcagtggcgcaaaggtacatatattttcccaatccacaacagtccccgcagcttttttttcacggcaacgctctaatactcaatagtatcaaccgacatctataggccgaactgttccgcccgagcgagagatccgaaaaggtggatgcgcaccgaaaagaaagagaatacaaaacagcccgaaaaagtgagatacagcgtgcagccacagaaaagaaacgcactgcatatattcacagaaaagaaacgcactgcatatattaatgtacgcgcgcgagagatgctgagggcagcactattcagtccaaagagagaaaacggaacggaaaaggacaaccatccagcaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaaaatcagatcggaatatatccgcccaagagcgagaggggtag Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ ttcttctttctttaaaactatgattataattatctctttcctaatctattacactgccaactatacgagcagtggcgcaaaggtacatatattttcccaatccacaacagtccccgcagcttttttttcacggcaacgctctaatactcaatagtatcaaccgacatctataggccgaactgttccgcccgagcgagagatccgaaaaggtggatgcgcaccgaaaagaaagagaatacaaaacagcccgaaaaagtgagatacagcgtgcagccacagaaaagaaacgcactgcatatattcacagaaaagaaacgcactgcatatattaatgtacgcgcgcgagagatgctgagggcagcactattcagtccaaagagagaaaacggaacggaaaaggacaaccatccagcaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaaaatcagatcggaatatatccgcccaagagcgagaggggtag Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 81 HP_score: -9.9 Tail_Score: -4.08216 Start: 459 End: 514 Full_Region: tgagaattttttcct cgtggcgcgagaattttttactt cccgaaccaa aacgaaaaagttcccgcgccacg ttttgcggagcatcg ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................cgtggcgcgagaattttttacttcccgaaccaaaacgaaaaagttcccgcgccacg............................................................................................................. TransTerm Strand: - Conf: 76 HP_score: -2.9 Tail_Score: -5.26875 Start: 502 End: 518 Full_Region: cttatgagaattttt tcctcgt ggc gcgagaa ttttttacttcccga .....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tcctcgtggcgcgagaa......................................................................................................... Find igs database================================================ Query_seq: PG1942:PG1943|PG1942:PG1943:30S ribosomal protein S12:hypothetical protein:<-<-:2028441..2029063 623 ttcttctttctttaaaactatgattataattatctctttcctaatctattacactgccaactatacgagcagtggcgcaaaggtacatatattttcccaatccacaacagtccccgcagcttttttttcacggcaacgctctaatactcaatagtatcaaccgacatctataggccgaactgttccgcccgagcgagagatccgaaaaggtggatgcgcaccgaaaagaaagagaatacaaaacagcccgaaaaagtgagatacagcgtgcagccacagaaaagaaacgcactgcatatattcacagaaaagaaacgcactgcatatattaatgtacgcgcgcgagagatgctgagggcagcactattcagtccaaagagagaaaacggaacggaaaaggacaaccatccagcaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaaaatcagatcggaatatatccgcccaagagcgagaggggtag Intra-Species Hit: Count: 1 Min: 1 Max: 623 Len: 623 Subject: NC_002950_PG1942_PG1943|30S ribosomal protein S12:hypothetical protein|NEGATIVE:NEGATIVE|[2028441,2029063]|623 HSP 1 e-value: 0.0 bit: 779.0 Len: 417 Query Start:1 Query End:417 Subject Strand: POSITIVE Subject Start: 1 Subject End: 417 ttcttctttctttaaaactatgattataattatctctttcctaatctattacactgccaactatacgagcagtggcgcaaaggtacatatattttcccaatccacaacagtccccgcagcnnnnnnnncacggcaacgctctaatactcaatagtatcaaccgacatctataggccgaactgttccgcccgagcgagagatccgaaaaggtggatgcgcaccgaaaagaaagagaatacaaaacagcccgaaaaagtgagatacagcgtgcagccacagaaaagaaacgcactgcatatattcacagaaaagaaacgcactgcatatattaatgtacgcgcgcgagagatgctgagggcagcactattcagtccaaagagagaaaacggaacggaaaaggacaaccatccagcaaac.............................................................................................................................................................................................................. ttcttctttctttaaaactatgattataattatctctttcctaatctattacactgccaactatacgagcagtggcgcaaaggtacatatattttcccaatccacaacagtccccgcagcttttttttcacggcaacgctctaatactcaatagtatcaaccgacatctataggccgaactgttccgcccgagcgagagatccgaaaaggtggatgcgcaccgaaaagaaagagaatacaaaacagcccgaaaaagtgagatacagcgtgcagccacagaaaagaaacgcactgcatatattcacagaaaagaaacgcactgcatatattaatgtacgcgcgcgagagatgctgagggcagcactattcagtccaaagagagaaaacggaacggaaaaggacaaccatccagcaaac.............................................................................................................................................................................................................. HSP 2 e-value: 2.0E-15 bit: 85.7 Len: 43 Query Start:581 Query End:623 Subject Strand: POSITIVE Subject Start: 581 Subject End: 623 ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................aaaatcagatcggaatatatccgcccaagagcgagaggggtag ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................aaaatcagatcggaatatatccgcccaagagcgagaggggtag Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UUCUUCUUUCUUUAAAACUAUGAUUAUAAUUAUCUCUUUCCUAAUCUAUUACACUGCCAACUAUACGAGCAGUGGCGCAAAGGUACAUAUAUUUUCCCAAUCCACAACAGUCCCCGCAGCUUUUUUUUCACGGCAACGCUCUAAUACUCAAUAGUAUCAACCGACAUCUAUAGGCCGAACUGUUCCGCCCGAGCGAGAGAUCCGAAAAGGUGGAUGCGCACCGAAAAGAAAGAGAAUACAAAACAGCCCGAAAAAGUGAGAUACAGCGUGCAGCCACAGAAAAGAAACGCACUGCAUAUAUUCACAGAAAAGAAACGCACUGCAUAUAUUAAUGUACGCGCGCGAGAGAUGCUGAGGGCAGCACUAUUCAGUCCAAAGAGAGAAAACGGAACGGAAAAGGACAACCAUCCAGCAAACCGUUUACGCGCCACAAUUUUCUGUUUCGAUGCUCCGCAAAACGUGGCGCGGGAACUUUUUCGUUUUGGUUCGGGAAGUAAAAAAUUCUCGCGCCACGAGGAAAAAAUUCUCAUAAGACUUUUCCCGAAAACACGCGCCGCAAUCAGAGCAAUUAUGGUUCGAGAAAAUCAGAUCGGAAUAUAUCCGCCCAAGAGCGAGAGGGGUAG ((((((((.((((..((((((((((.....((((((((.............(((((((........).))))))((((....((((((...............((....))....((((((((((((((..(((..(((((..(((((....)))))...............(((.((.....)).))).))))).............((((......)))).......................))).......((((((((..((((((.................)))).)).))).))))).))))))))).))..)))........))))))))))..))))))))((((.((.((((...(((..((....))..)))..(((((((((((((((......))).......(((....)))......)))))))))))).)))))).......((((((((((((.((((((.((.((((.((((((........)))))).)))).)).)))))).))))).......((((....))))...)))))))..))))...))))))))))...........(..((((.....))))..).)))).))))))))... (-156.33) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ CUACCCCUCUCGCUCUUGGGCGGAUAUAUUCCGAUCUGAUUUUCUCGAACCAUAAUUGCUCUGAUUGCGGCGCGUGUUUUCGGGAAAAGUCUUAUGAGAAUUUUUUCCUCGUGGCGCGAGAAUUUUUUACUUCCCGAACCAAAACGAAAAAGUUCCCGCGCCACGUUUUGCGGAGCAUCGAAACAGAAAAUUGUGGCGCGUAAACGGUUUGCUGGAUGGUUGUCCUUUUCCGUUCCGUUUUCUCUCUUUGGACUGAAUAGUGCUGCCCUCAGCAUCUCUCGCGCGCGUACAUUAAUAUAUGCAGUGCGUUUCUUUUCUGUGAAUAUAUGCAGUGCGUUUCUUUUCUGUGGCUGCACGCUGUAUCUCACUUUUUCGGGCUGUUUUGUAUUCUCUUUCUUUUCGGUGCGCAUCCACCUUUUCGGAUCUCUCGCUCGGGCGGAACAGUUCGGCCUAUAGAUGUCGGUUGAUACUAUUGAGUAUUAGAGCGUUGCCGUGAAAAAAAAGCUGCGGGGACUGUUGUGGAUUGGGAAAAUAUAUGUACCUUUGCGCCACUGCUCGUAUAGUUGGCAGUGUAAUAGAUUAGGAAAGAGAUAAUUAUAAUCAUAGUUUUAAAGAAAGAAGAA .......((((..((((...((((.....))))...(((((.((((...((...(((((.(((...((.(((.((......(((((((((((....)).)))))))))..((((((((((..........(((((((.((...((((...(((((((((((....(((..(((.(((((((((.(((((..((((((((((....((..((((((..(((.(..((.(((.((.(((...........))))).))).))..).))).))))))..))..)))))).))))..((((((.(((((.((..........(((((((((.((.((((((..(......)..)).))))))))))).)))).....)).)))))..))))))...))))))))))))))..((((........))))....(((((.(((.((.....)).))).............(((((((....))))))))))))...)))..))).....)).))))))))).)))))).)))))))............)))))))))).)).)))...))...))).)))))......))...)))).)))))..............))))..).))). (-189.41) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 990 120 71 211 162 NC_002950:PG1942|5end_30S_ribosomal_protein_S12_2028350..2028580_NEGATIVE 846 510 461 146 97 NC_002950:PG0132|5end_hypothetical_protein_152879..153109_POSITIVE 749 510 461 159 110 NC_002950:PG2063|5end_hypothetical_protein_2160596..2160826_NEGATIVE 696 488 441 88 41 NC_002950:PG0007|5end_hypothetical_protein_6913..7143_NEGATIVE 515 566 521 142 97 NC_002950:PG1617|5end_hypothetical_protein_1697755..1697985_NEGATIVE 492 510 463 49 2 NC_002950:PG0080|5end_hypothetical_protein_93832..94062_NEGATIVE 459 493 451 49 8 NC_002950:PG1799|5end_hypothetical_protein_1894499..1894729_POSITIVE 423 489 444 68 19 NC_002950:PG1481|5end_conjugative_transposon_protein_TraG_1558447..1558677_NEGATIVE 414 218 172 68 18 NC_002950:PG0898|5end_hypothetical_protein_963350..963580_NEGATIVE 401 492 451 163 122 NC_002950:PG0081|5end_hypothetical_protein_93805..94035_POSITIVE 393 493 452 71 30 NC_002950:PG1980|5end_hypothetical_protein_2067930..2068160_NEGATIVE 388 490 442 69 26 NC_002950:PG1253|5end_DNA_ligase,_NAD-dependent_1331606..1331836_NEGATIVE 386 219 173 210 152 NC_002950:PG0809|5end_hypothetical_protein_872014..872244_NEGATIVE 379 221 189 224 200 NC_002950:PG2112|5end_hypothetical_protein_2221471..2221701_POSITIVE 378 214 173 188 150 NC_002950:PG1979|5end_hypothetical_protein_2067272..2067502_POSITIVE 378 396 351 185 137 NC_002950:PG1688|5end_transcription_elongation_factor_GreA_1774686..1774916_NEGATIVE 370 480 432 190 129 NC_002950:PG0419|5end_hypothetical_protein_460607..460837_NEGATIVE 369 470 426 80 37 NC_002950:PG0906|5end_lipoprotein,_putative_970616..970846_POSITIVE 369 290 244 220 180 NC_002950:PG0756|5end_hypothetical_protein_805673..805903_NEGATIVE 368 371 333 135 87 NC_002950:PG2071|5end_hypothetical_protein_2166437..2166667_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 527 528 487 44 2 NC_002950:PG0542|3end_hypothetical_protein_595377..595527_NEGATIVE 466 500 451 51 2 NC_002950:PG0732|3end_hypothetical_protein_783018..783168_POSITIVE 439 101 66 68 34 NC_002950:PG1591|3end_hypothetical_protein_1669094..1669244_POSITIVE 423 489 444 71 22 NC_002950:PG1482|3end_conjugative_transposon_protein_TraF_1558444..1558594_NEGATIVE 415 519 473 146 97 NC_002950:PG1718|3end_hypothetical_protein_1806532..1806682_NEGATIVE 404 466 421 123 69 NC_002950:PG0344|3end_purple_acid_phosphatase_378543..378693_NEGATIVE 388 490 442 81 38 NC_002950:PG1254|3end_acetyltransferase,_GNAT_family_1331594..1331744_NEGATIVE 373 223 181 145 104 NC_002950:PG0902|3end_alpha-1,2-mannosidase_family_protein_966746..966896_NEGATIVE 365 468 425 53 15 NC_002950:PG0156|3end_modification_methylase,_HemK_family_179789..179939_POSITIVE 364 470 425 149 102 NC_002950:PG2212|3end_hypothetical_protein_2324483..2324633_NEGATIVE 363 620 571 72 23 NC_002950:PG0148|3end_sigma-54-dependent_transcriptional_regulator_169654..169804_NEGATIVE 357 224 183 113 57 NC_002950:PG1757|3end_hypothetical_protein_1843931..1844081_NEGATIVE 357 379 340 116 63 NC_002950:PG1034|3end_ABC_transporter,_ATP-binding_protein_1096977..1097127_POSITIVE 356 217 172 88 38 NC_002950:PG1312|3end_capA_protein,_putative_1391553..1391703_POSITIVE 355 217 173 67 14 NC_002950:PG0003|3end_hypothetical_protein_1919..2069_NEGATIVE 354 204 164 133 87 NC_002950:PG0853|3end_DNA-binding_protein,_histone-like_family_914949..915099_POSITIVE 352 374 336 97 55 NC_002950:PG0745|3end_lactoylglutathione_lyase,_putative_791982..792132_NEGATIVE 352 499 458 79 21 NC_002950:PG0733|3end_riboflavin_synthase_subunit_alpha_783856..784006_POSITIVE 347 466 424 151 109 NC_002950:PG1655|3end_hypothetical_protein_1737384..1737534_POSITIVE 346 210 161 81 25 NC_002950:PG1752|3end_hypothetical_protein_1838698..1838848_POSITIVE