Origin IGS: acattttttcaattaacaaataaggagtaaccctctttcgctcctaacctatacgacacccgccaggttctgtcacgaacctgacgggtgtcttctttttatcatgccccgaaaaggccttttggggcctgcgttttatatacaaatcgtttacgatatatatatttattgaaaacgatttatatataaattgaaaacgatctatatataaattgaaaatggtttatatacagatcgtcaggcagtcttccaaagagcacattccgagcaacaaaagtccgttttctcgtatttttcacctcgctttcccacacactttcagctgcttatttagaatgattctaagctcgtcttcattgttgaaaacttttttggctgtcttttaccctaaaaactcattctttccacacccatcacaggccgacattcaggctgttatcacagagcgacataaaaagccaagaagaaaaggatcccaaaacacacaaaatcaagacgatcttgcttgcaataatgaaaaatacatttcctttgcagtaaaatatcatcaataa .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 ttattgatgatattttactgcaaaggaaatgtatttttcattattgcaagcaagatcgtcttgattttgtgtgttttgggatccttttcttcttggctttttatgtcgctctgtgataacagcctgaatgtcggcctgtgatgggtgtggaaagaatgagtttttagggtaaaagacagccaaaaaagttttcaacaatgaagacgagcttagaatcattctaaataagcagctgaaagtgtgtgggaaagcgaggtgaaaaatacgagaaaacggacttttgttgctcggaatgtgctctttggaagactgcctgacgatctgtatataaaccattttcaatttatatatagatcgttttcaatttatatataaatcgttttcaataaatatatatatcgtaaacgatttgtatataaaacgcaggccccaaaaggccttttcggggcatgataaaaagaagacacccgtcaggttcgtgacagaacctggcgggtgtcgtataggttaggagcgaaagagggttactccttatttgttaattgaaaaaatgt Mask Tandem Repeat Region ================================================ acattttttcaattaacaaataaggagtaaccctctttcgctcctaacctatacgacacccgccaggttctgtcacgaacctgacgggtgtcttctttttatcatgccccgaaaaggccttttggggcctgcgttttatatacaaatcgtttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncagatcgtcaggcagtcttccaaagagcacattccgagcaacaaaagtccgttttctcgtatttttcacctcgctttcccacacactttcagctgcttatttagaatgattctaagctcgtcttcattgttgaaaacttttttggctgtcttttaccctaaaaactcattctttccacacccatcacaggccgacattcaggctgttatcacagagcgacataaaaagccaagaagaaaaggatcccaaaacacacaaaatcaagacgatcttgcttgcaataatgaaaaatacatttcctttgcagtaaaatatcatcaataa Find is-nt database================================================ Query_seq: PG1889:PG1890|PG1889:PG1890:hypothetical protein:lipoprotein, putative:->->:1987151..1987704 554 acattttttcaattaacaaataaggagtaaccctctttcgctcctaacctatacgacacccgccaggttctgtcacgaacctgacgggtgtcttctttttatcatgccccgaaaaggccttttggggcctgcgttttatatacaaatcgtttacgatatatatatttattgaaaacgatttatatataaattgaaaacgatctatatataaattgaaaatggtttatatacagatcgtcaggcagtcttccaaagagcacattccgagcaacaaaagtccgttttctcgtatttttcacctcgctttcccacacactttcagctgcttatttagaatgattctaagctcgtcttcattgttgaaaacttttttggctgtcttttaccctaaaaactcattctttccacacccatcacaggccgacattcaggctgttatcacagagcgacataaaaagccaagaagaaaaggatcccaaaacacacaaaatcaagacgatcttgcttgcaataatgaaaaatacatttcctttgcagtaaaatatcatcaataa Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PG1889:PG1890|PG1889:PG1890:hypothetical protein:lipoprotein, putative:->->:1987151..1987704 554 acattttttcaattaacaaataaggagtaaccctctttcgctcctaacctatacgacacccgccaggttctgtcacgaacctgacgggtgtcttctttttatcatgccccgaaaaggccttttggggcctgcgttttatatacaaatcgtttacgatatatatatttattgaaaacgatttatatataaattgaaaacgatctatatataaattgaaaatggtttatatacagatcgtcaggcagtcttccaaagagcacattccgagcaacaaaagtccgttttctcgtatttttcacctcgctttcccacacactttcagctgcttatttagaatgattctaagctcgtcttcattgttgaaaacttttttggctgtcttttaccctaaaaactcattctttccacacccatcacaggccgacattcaggctgttatcacagagcgacataaaaagccaagaagaaaaggatcccaaaacacacaaaatcaagacgatcttgcttgcaataatgaaaaatacatttcctttgcagtaaaatatcatcaataa Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PG1889:PG1890|PG1889:PG1890:hypothetical protein:lipoprotein, putative:->->:1987151..1987704 554 acattttttcaattaacaaataaggagtaaccctctttcgctcctaacctatacgacacccgccaggttctgtcacgaacctgacgggtgtcttctttttatcatgccccgaaaaggccttttggggcctgcgttttatatacaaatcgtttacgatatatatatttattgaaaacgatttatatataaattgaaaacgatctatatataaattgaaaatggtttatatacagatcgtcaggcagtcttccaaagagcacattccgagcaacaaaagtccgttttctcgtatttttcacctcgctttcccacacactttcagctgcttatttagaatgattctaagctcgtcttcattgttgaaaacttttttggctgtcttttaccctaaaaactcattctttccacacccatcacaggccgacattcaggctgttatcacagagcgacataaaaagccaagaagaaaaggatcccaaaacacacaaaatcaagacgatcttgcttgcaataatgaaaaatacatttcctttgcagtaaaatatcatcaataa Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 acattttttcaattaacaaataaggagtaaccctctttcgctcctaacctatacgacacccgccaggttctgtcacgaacctgacgggtgtcttctttttatcatgccccgaaaaggccttttggggcctgcgttttatatacaaatcgtttacgatatatatatttattgaaaacgatttatatataaattgaaaacgatctatatataaattgaaaatggtttatatacagatcgtcaggcagtcttccaaagagcacattccgagcaacaaaagtccgttttctcgtatttttcacctcgctttcccacacactttcagctgcttatttagaatgattctaagctcgtcttcattgttgaaaacttttttggctgtcttttaccctaaaaactcattctttccacacccatcacaggccgacattcaggctgttatcacagagcgacataaaaagccaagaagaaaaggatcccaaaacacacaaaatcaagacgatcttgcttgcaataatgaaaaatacatttcctttgcagtaaaatatcatcaataa Predict ORF larger than 30AA ================================================ Protein_Len: 50 Strand: + Start: 20 End: 169 ................... M R S N P L S L L T Y T T P A R F C H E P D G C L L F I M P R K G L L G P A F Y I Q I V Y D I Y I Y ................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 33 Strand: + Start: 88 End: 186 ....................................................................................... M S S F Y H A P K R P F G A C V L Y T N R L R Y I Y L L K T I Y I ................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 47 Strand: + Start: 51 End: 191 .................................................. M R H P P G S V T N L T G V F F L S C P E K A F W G L R F I Y K S F T I Y I F I E N D L Y I N ........................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 40 Strand: + Start: 212 End: 331 ................................................................................................................................................................................................................... M E N G L Y T D R Q A V F Q R A H S E Q Q K S V F S Y F S P R F P T H F Q L L I ............................................................................................................................................................................................................................... Protein_Len: 37 Strand: + Start: 226 End: 336 ................................................................................................................................................................................................................................. M Y R S S G S L P K S T F R A T K V R F L V F F T S L S H T L S A A Y L E .......................................................................................................................................................................................................................... Protein_Len: 54 Strand: + Start: 376 End: 537 ....................................................................................................................................................................................................................................................................................................................................................................................... M S F T L K T H S F H T H H R P T F R L L S Q S D I K S Q E E K D P K T H K I K T I L L A I M K N T F P L Q ................. Protein_Len: 60 Strand: + Start: 204 End: 551 ........................................................................................................................................................................................................... M Y K L K M V Y I Q I V R Q S S K E H I P S N K S P F S R I F H L A F P H T F S C L F R M I L S S S S L L K T F L A V F ... Protein_Len: 37 Strand: - Start: 442 End: 552 ......................................................................................................................................................................................................................................................................................................................................................................................................................................................... L A V Y F A L F F L I G F C V F D L R D Q K C Y H F I C K R Q L L I D D M .. Protein_Len: 45 Strand: - Start: 417 End: 551 ................................................................................................................................................................................................................................................................................................................................................................................................................................ L G V N L S N D C L S M F L W S S F S G L V C L I L V I K S A I I F F V N G K C Y F I M M ... Protein_Len: 44 Strand: - Start: 183 End: 314 ...................................................................................................................................................................................... I Y I S F S R Y I F Q F H N I Y L D D P L R G F L V N R A V F T R K R T N K V E S E W M ................................................................................................................................................................................................................................................ Protein_Len: 58 Strand: - Start: 47 End: 220 .............................................. G I R C G G P E T V F R V P T K K K D H G S F A K Q P R R K I Y L D N V I Y I N I S F S K Y I F Q F R D I Y L N F M .............................................................................................................................................................................................................................................................................................................................................. acattttttcaattaacaaataaggagtaaccctctttcgctcctaacctatacgacacccgccaggttctgtcacgaacctgacgggtgtcttctttttatcatgccccgaaaaggccttttggggcctgcgttttatatacaaatcgtttacgatatatatatttattgaaaacgatttatatataaattgaaaacgatctatatataaattgaaaatggtttatatacagatcgtcaggcagtcttccaaagagcacattccgagcaacaaaagtccgttttctcgtatttttcacctcgctttcccacacactttcagctgcttatttagaatgattctaagctcgtcttcattgttgaaaacttttttggctgtcttttaccctaaaaactcattctttccacacccatcacaggccgacattcaggctgttatcacagagcgacataaaaagccaagaagaaaaggatcccaaaacacacaaaatcaagacgatcttgcttgcaataatgaaaaatacatttcctttgcagtaaaatatcatcaataa Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ acattttttcaattaacaaataaggagtaaccctctttcgctcctaacctatacgacacccgccaggttctgtcacgaacctgacgggtgtcttctttttatcatgccccgaaaaggccttttggggcctgcgttttatatacaaatcgtttacgatatatatatttattgaaaacgatttatatataaattgaaaacgatctatatataaattgaaaatggtttatatacagatcgtcaggcagtcttccaaagagcacattccgagcaacaaaagtccgttttctcgtatttttcacctcgctttcccacacactttcagctgcttatttagaatgattctaagctcgtcttcattgttgaaaacttttttggctgtcttttaccctaaaaactcattctttccacacccatcacaggccgacattcaggctgttatcacagagcgacataaaaagccaagaagaaaaggatcccaaaacacacaaaatcaagacgatcttgcttgcaataatgaaaaatacatttcctttgcagtaaaatatcatcaataa Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 100 HP_score: -13.9 Tail_Score: -4.91109 Start: 52 End: 95 Full_Region: TTCGCTCCTAACCTA TACGACACCCGCCAGGTTC TGTCAC GAACCTGACGGGTGTCTTC TTTTTATCATGCCCC ...................................................TACGACACCCGCCAGGTTCTGTCACGAACCTGACGGGTGTCTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 100 HP_score: -20.0 Tail_Score: -4.56153 Start: 55 End: 92 Full_Region: GCTCCTAACCTATAC GACACCCGCCAGGTTC TGTCAC GAACCTGACGGGTGTC TTCTTTTTATCATGC ......................................................GACACCCGCCAGGTTCTGTCACGAACCTGACGGGTGTC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: - Conf: 100 HP_score: -19.0 Tail_Score: -2.66733 Start: 57 End: 90 Full_Region: atgataaaaagaaga cacccgtcaggttc gtgaca gaacctggcgggtg tcgtataggttagga ........................................................cacccgtcaggttcgtgacagaacctggcgggtg................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ TransTerm Strand: - Conf: 100 HP_score: -15.8 Tail_Score: -2.87522 Start: 59 End: 88 Full_Region: gataaaaagaagaca cccgtcaggttc gtgaca gaacctggcggg tgtcgtataggttag ..........................................................cccgtcaggttcgtgacagaacctggcggg.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: + Conf: 62 HP_score: -2.6 Tail_Score: -4.53303 Start: 101 End: 133 Full_Region: GGGTGTCTTCTTTTT ATCATGCCCCGAAA AGGCC TTTTGGGGCCTGCG TTTTATATACAAATC ....................................................................................................ATCATGCCCCGAAAAGGCCTTTTGGGGCCTGCG..................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 58 HP_score: -6.1 Tail_Score: -3.315 Start: 102 End: 132 Full_Region: GGTGTCTTCTTTTTA TCATGCCCCGAAA AGGCC TTTTGGGGCCTGC GTTTTATATACAAAT .....................................................................................................TCATGCCCCGAAAAGGCCTTTTGGGGCCTGC...................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 71 HP_score: -9.6 Tail_Score: -2.58418 Start: 103 End: 131 Full_Region: GTGTCTTCTTTTTAT CATGCCCCGAAA AGGCC TTTTGGGGCCTG CGTTTTATATACAAA ......................................................................................................CATGCCCCGAAAAGGCCTTTTGGGGCCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 57 HP_score: -6.4 Tail_Score: -2.82775 Start: 105 End: 129 Full_Region: GTCTTCTTTTTATCA TGCCCCGAAA AGGCC TTTTGGGGCC TGCGTTTTATATACA ........................................................................................................TGCCCCGAAAAGGCCTTTTGGGGCC......................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 70 HP_score: -6.0 Tail_Score: -4.20531 Start: 176 End: 215 Full_Region: tatataaaccatttt caatttatatatagatcg tttt caatttatatataaatcg ttttcaataaatata ...............................................................................................................................................................................caatttatatatagatcgttttcaatttatatataaatcg................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 80 HP_score: -7.5 Tail_Score: -4.41177 Start: 198 End: 237 Full_Region: tggaagactgcctga cgatctgtatataaa ccattttcaa tttatatatagatcg ttttcaatttatata .....................................................................................................................................................................................................cgatctgtatataaaccattttcaatttatatatagatcg............................................................................................................................................................................................................................................................................................................................. TransTerm Strand: + Conf: 70 HP_score: -2.7 Tail_Score: -5.15381 Start: 350 End: 367 Full_Region: AATGATTCTAAGCTC GTCTTCA TTGT TGAAAAC TTTTTTGGCTGTCTT .............................................................................................................................................................................................................................................................................................................................................................GTCTTCATTGTTGAAAAC........................................................................................................................................................................................... Find igs database================================================ Query_seq: PG1889:PG1890|PG1889:PG1890:hypothetical protein:lipoprotein, putative:->->:1987151..1987704 554 acattttttcaattaacaaataaggagtaaccctctttcgctcctaacctatacgacacccgccaggttctgtcacgaacctgacgggtgtcttctttttatcatgccccgaaaaggccttttggggcctgcgttttatatacaaatcgtttacgatatatatatttattgaaaacgatttatatataaattgaaaacgatctatatataaattgaaaatggtttatatacagatcgtcaggcagtcttccaaagagcacattccgagcaacaaaagtccgttttctcgtatttttcacctcgctttcccacacactttcagctgcttatttagaatgattctaagctcgtcttcattgttgaaaacttttttggctgtcttttaccctaaaaactcattctttccacacccatcacaggccgacattcaggctgttatcacagagcgacataaaaagccaagaagaaaaggatcccaaaacacacaaaatcaagacgatcttgcttgcaataatgaaaaatacatttcctttgcagtaaaatatcatcaataa Intra-Species Hit: Count: 1 Min: 1 Max: 554 Len: 554 Subject: NC_002950_PG1889_PG1890|hypothetical protein:lipoprotein, putative|POSITIVE:POSITIVE|[1987151,1987704]|554 HSP 1 e-value: 0.0 bit: 664.0 Len: 335 Query Start:220 Query End:554 Subject Strand: POSITIVE Subject Start: 220 Subject End: 554 ...........................................................................................................................................................................................................................tggtttatatacagatcgtcaggcagtcttccaaagagcacattccgagcaacaaaagtccgttttctcgtatttttcacctcgctttcccacacactttcagctgcttatttagaatgattctaagctcgtcttcattgttgaaaacttttttggctgtcttttaccctaaaaactcattctttccacacccatcacaggccgacattcaggctgttatcacagagcgacataaaaagccaagaagaaaaggatcccaaaacacacaaaatcaagacgatcttgcttgcaataatgaaaaatacatttcctttgcagtaaaatatcatcaataa ...........................................................................................................................................................................................................................tggtttatatacagatcgtcaggcagtcttccaaagagcacattccgagcaacaaaagtccgttttctcgtatttttcacctcgctttcccacacactttcagctgcttatttagaatgattctaagctcgtcttcattgttgaaaacttttttggctgtcttttaccctaaaaactcattctttccacacccatcacaggccgacattcaggctgttatcacagagcgacataaaaagccaagaagaaaaggatcccaaaacacacaaaatcaagacgatcttgcttgcaataatgaaaaatacatttcctttgcagtaaaatatcatcaataa HSP 2 e-value: 3.0E-69 bit: 264.0 Len: 133 Query Start:1 Query End:133 Subject Strand: POSITIVE Subject Start: 1 Subject End: 133 acattttttcaattaacaaataaggagtaaccctctttcgctcctaacctatacgacacccgccaggttctgtcacgaacctgacgggtgtcttctttttatcatgccccgaaaaggccttttggggcctgcg..................................................................................................................................................................................................................................................................................................................................................................................................................................... acattttttcaattaacaaataaggagtaaccctctttcgctcctaacctatacgacacccgccaggttctgtcacgaacctgacgggtgtcttctttttatcatgccccgaaaaggccttttggggcctgcg..................................................................................................................................................................................................................................................................................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ ACAUUUUUUCAAUUAACAAAUAAGGAGUAACCCUCUUUCGCUCCUAACCUAUACGACACCCGCCAGGUUCUGUCACGAACCUGACGGGUGUCUUCUUUUUAUCAUGCCCCGAAAAGGCCUUUUGGGGCCUGCGUUUUAUAUACAAAUCGUUUACGAUAUAUAUAUUUAUUGAAAACGAUUUAUAUAUAAAUUGAAAACGAUCUAUAUAUAAAUUGAAAAUGGUUUAUAUACAGAUCGUCAGGCAGUCUUCCAAAGAGCACAUUCCGAGCAACAAAAGUCCGUUUUCUCGUAUUUUUCACCUCGCUUUCCCACACACUUUCAGCUGCUUAUUUAGAAUGAUUCUAAGCUCGUCUUCAUUGUUGAAAACUUUUUUGGCUGUCUUUUACCCUAAAAACUCAUUCUUUCCACACCCAUCACAGGCCGACAUUCAGGCUGUUAUCACAGAGCGACAUAAAAAGCCAAGAAGAAAAGGAUCCCAAAACACACAAAAUCAAGACGAUCUUGCUUGCAAUAAUGAAAAAUACAUUUCCUUUGCAGUAAAAUAUCAUCAAUAA .................(((((((.(((...........((((...........((((((((.(((((((......))))))).)))))))).............(((((((((.....)))))))))((((..((((((((.(((((((((.(((((........))))).))))))))).))))))))......(((((((.((((((((((......)))))))))).)))))))...)))).........))))......((((....((((((.((......)).))))))...))))..................))).))))))).((.((((..((((.(((((((.(((.(((.....((((((((((.........................................((((........))))(((.((...))..)))......))))))))))....((...))........)))))).))))))).)))).((((((....((((......))))..))))))......))))))..... (-137.30) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UUAUUGAUGAUAUUUUACUGCAAAGGAAAUGUAUUUUUCAUUAUUGCAAGCAAGAUCGUCUUGAUUUUGUGUGUUUUGGGAUCCUUUUCUUCUUGGCUUUUUAUGUCGCUCUGUGAUAACAGCCUGAAUGUCGGCCUGUGAUGGGUGUGGAAAGAAUGAGUUUUUAGGGUAAAAGACAGCCAAAAAAGUUUUCAACAAUGAAGACGAGCUUAGAAUCAUUCUAAAUAAGCAGCUGAAAGUGUGUGGGAAAGCGAGGUGAAAAAUACGAGAAAACGGACUUUUGUUGCUCGGAAUGUGCUCUUUGGAAGACUGCCUGACGAUCUGUAUAUAAACCAUUUUCAAUUUAUAUAUAGAUCGUUUUCAAUUUAUAUAUAAAUCGUUUUCAAUAAAUAUAUAUAUCGUAAACGAUUUGUAUAUAAAACGCAGGCCCCAAAAGGCCUUUUCGGGGCAUGAUAAAAAGAAGACACCCGUCAGGUUCGUGACAGAACCUGGCGGGUGUCGUAUAGGUUAGGAGCGAAAGAGGGUUACUCCUUAUUUGUUAAUUGAAAAAAUGU .........(((((((.((....))))))))).(((((((.((..(((.((((((((.....)))))))).)))..))...((((..((((((((..(((((((.(((((((((....))))((((....(((((.(((.....((.(((((.((.((((((.....(((........)))......(((((((....))))))).))))))...)).))))).))..)))))))).......))))..))))).)))))))...))))).......(((((..(((((.(((...((..(((((....((((..(((((((((((((((((..........))))))))))))))))).....((((((((((((((((((.(.(((........))).).))))))))))))))))))..))))...)))))..))...))).))))).....)))))..((((((((((((((((......))))))))))))))))....)))..))))(((((.(((((....))))).)))))....))))))).... (-173.50) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 575 370 321 79 30 NC_002950:PG1357|5end_hypothetical_protein_1436458..1436688_NEGATIVE 549 157 111 103 57 NC_002950:PG0371|5end_hypothetical_protein_404043..404273_POSITIVE 511 157 111 98 51 NC_002950:PG1574|5end_hypothetical_protein_1652613..1652843_NEGATIVE 502 157 111 143 97 NC_002950:PG1223|5end_hypothetical_protein_1299461..1299691_POSITIVE 486 377 331 68 22 NC_002950:PG0773|5end_hypothetical_protein_825131..825361_POSITIVE 483 376 334 122 80 NC_002950:PG0609|5end_hypothetical_protein_663183..663413_POSITIVE 468 90 41 135 86 NC_002950:PG1695|5end_hypothetical_protein_1779440..1779670_POSITIVE 450 370 324 49 3 NC_002950:PG0995|5end_hypothetical_protein_1055585..1055815_NEGATIVE 445 238 192 118 72 NC_002950:PG1222|5end_hypothetical_protein_1299392..1299622_NEGATIVE 385 128 86 96 55 NC_002950:PG0145|5end_hypothetical_protein_167831..168061_POSITIVE 364 110 65 85 33 NC_002950:PG0866|5end_hypothetical_protein_928983..929213_POSITIVE 364 129 85 126 66 NC_002950:PG0463|5end_folylpolyglutamate_synthase_507606..507836_NEGATIVE 361 328 282 187 142 NC_002950:PG1104|5end_hypothetical_protein_1174935..1175165_POSITIVE 358 90 41 192 133 NC_002950:PG1042|5end_glycogen_synthase,_putative_1110638..1110868_NEGATIVE 356 450 403 62 3 NC_002950:PG1048|5end_N-acetylmuramoyl-L-alanine_amidase,_family_3_1115156..1115386_POSITIVE 352 77 32 183 123 NC_002950:PG2185|5end_transporter,_putative_2293249..2293479_NEGATIVE 344 107 66 93 47 NC_002950:PG0227|5end_DNA_repair_protein_RadA_263978..264208_NEGATIVE 343 80 36 214 168 NC_002950:PG2032|5end_primosomal_protein_N'_2133381..2133611_NEGATIVE 341 130 82 126 64 NC_002950:PG2212|5end_hypothetical_protein_2324767..2324997_NEGATIVE 340 448 404 102 41 NC_002950:PG1760|5end_ABC_transporter,_ATP-binding_protein_1846507..1846737_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 591 379 334 60 14 NC_002950:PG1868|3end_hypothetical_protein_1965098..1965248_NEGATIVE 575 220 172 49 1 NC_002950:PG0773|3end_hypothetical_protein_825348..825498_POSITIVE 547 100 54 61 10 NC_002950:PG1274|3end_elongation_factor_P_1352489..1352639_POSITIVE 486 377 331 61 15 NC_002950:PG0772|3end_hypothetical_protein_825204..825354_POSITIVE 478 218 171 59 11 NC_002950:PG1357|3end_hypothetical_protein_1436327..1436477_NEGATIVE 469 92 57 36 1 NC_002950:PG1889|3end_hypothetical_protein_1987090..1987240_POSITIVE 438 259 212 49 2 NC_002950:PG1167|3end_hypothetical_protein_1248644..1248794_POSITIVE 415 258 211 53 6 NC_002950:PG0995|3end_hypothetical_protein_1055469..1055619_NEGATIVE 389 238 194 77 27 NC_002950:PG0609|3end_hypothetical_protein_663355..663505_POSITIVE 364 129 83 89 42 NC_002950:PG1473|3end_conjugative_transposon_protein_TraQ_1549761..1549911_NEGATIVE 364 129 85 129 69 NC_002950:PG0464|3end_adenylosuccinate_synthetase_507603..507753_NEGATIVE 359 100 54 61 10 NC_002950:PG0568|3end_elongation_factor_P_623999..624149_NEGATIVE 352 77 32 148 88 NC_002950:PG2186|3end_transcriptional_regulator,_putative_2293284..2293434_NEGATIVE 344 107 66 47 1 NC_002950:PG0228|3end_DdaH_family_protein_264024..264174_NEGATIVE 340 448 404 112 51 NC_002950:PG1759|3end_adhesion_protein,_putative_1846597..1846747_POSITIVE 339 99 51 145 97 NC_002950:PG0371|3end_hypothetical_protein_404224..404374_POSITIVE 333 119 75 147 97 NC_002950:PG0359|3end_flavin_reductase_domain_protein_393518..393668_POSITIVE 332 90 41 75 17 NC_002950:PG0606|3end_hypothetical_protein_662451..662601_NEGATIVE 331 389 351 41 1 NC_002950:PG0095|3end_DNA_mismatch_repair_protein_112088..112238_NEGATIVE 330 89 53 71 25 NC_002950:PG0430|3end_ferrodoxin_oxidoreductase_beta_subunit_469073..469223_POSITIVE