Origin IGS: gaaggctctgagagacaaacaggcaacttactttgcaaactttcggagccgacaagcttcagcgagccggacgtatcacacggcatgattcccatagtccagcatccctgccggaatatgatgtgtgactacgcttccggctccaatgacggctccccctctccgatgtttacacccggcaggctgtaggtttgaaccagcctcgtattataacgtcagttcgacgtaagaaaacgccaatgaataattcttttcctgatcagaggctaatgccctaaaattctcagacaaataggggtaccctgcttctgcttggatcgaaccaacattgaaattcggattgcttttttgaccgaatgttacagtccgtacagaaagatgggctataccatagggcacatggaggtactccgtaggggatgacgagctatcccgtacagctcttcgagctacgctgtagagctcagcgaggtacgccctacagcgtagcgagccgagccgtagagttccgctccgggagctgtagaggtggccgagccgagccctagagcccggcgcgccgagccctacagcgtagctcgaagagccgtagagcgcagctcggtacgctctacggcgtagcccgagtcgctgtagggcgtagctcgaccccctttcggagtatgttccgaacggctataaaacaatgcggattcgatccaagaaaaacatgcaatatgctgtttgtcaacgtatttcatttctcggttgagagatttcagcttcgggagacttcgacatccgatgagacgtcaaattttttccctttcattttctgatcggttatagttaacccaacaaaggattgatcgacaaatacttatgagagtcggcaccataacgcttatatcgaactcacgttattataaagacgtcgaactgacgttaaaaagctttagggcactatgtgta .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 tacacatagtgccctaaagctttttaacgtcagttcgacgtctttataataacgtgagttcgatataagcgttatggtgccgactctcataagtatttgtcgatcaatcctttgttgggttaactataaccgatcagaaaatgaaagggaaaaaatttgacgtctcatcggatgtcgaagtctcccgaagctgaaatctctcaaccgagaaatgaaatacgttgacaaacagcatattgcatgtttttcttggatcgaatccgcattgttttatagccgttcggaacatactccgaaagggggtcgagctacgccctacagcgactcgggctacgccgtagagcgtaccgagctgcgctctacggctcttcgagctacgctgtagggctcggcgcgccgggctctagggctcggctcggccacctctacagctcccggagcggaactctacggctcggctcgctacgctgtagggcgtacctcgctgagctctacagcgtagctcgaagagctgtacgggatagctcgtcatcccctacggagtacctccatgtgccctatggtatagcccatctttctgtacggactgtaacattcggtcaaaaaagcaatccgaatttcaatgttggttcgatccaagcagaagcagggtacccctatttgtctgagaattttagggcattagcctctgatcaggaaaagaattattcattggcgttttcttacgtcgaactgacgttataatacgaggctggttcaaacctacagcctgccgggtgtaaacatcggagagggggagccgtcattggagccggaagcgtagtcacacatcatattccggcagggatgctggactatgggaatcatgccgtgtgatacgtccggctcgctgaagcttgtcggctccgaaagtttgcaaagtaagttgcctgtttgtctctcagagccttc Mask Tandem Repeat Region ================================================ gaaggctctgagagacaaacaggcaacttactttgcaaactttcggagccgacaagcttcagcgagccggacgtatcacacggcatgattcccatagtccagcatccctgccggaatatgatgtgtgactacgcttccggctccaatgacggctccccctctccgatgtttacacccggcaggctgtaggtttgaaccagcctcgtattataacgtcagttcgacgtaagaaaacgccaatgaataattcttttcctgatcagaggctaatgccctaaaattctcagacaaataggggtaccctgcttctgcttggatcgaaccaacattgaaattcggattgcttttttgaccgaatgttacagtccgtacagaaagatgggctataccatagggcacatggaggtactccgtaggggatgacgagctatcccgtacagctcttcgagctacgctgtagagctcagcgaggtacgccctacagcgtagcgagccgagccgtagagttccgctccgggagctgtagaggtggccgagccgagccctagagcccggcgcgccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtacgctctacggcgtagcccgagtcgctgtagggcgtagctcgaccccctttcggagtatgttccgaacggctataaaacaatgcggattcgatccaagaaaaacatgcaatatgctgtttgtcaacgtatttcatttctcggttgagagatttcagcttcgggagacttcgacatccgatgagacgtcaaattttttccctttcattttctgatcggttatagttaacccaacaaaggattgatcgacaaatacttatgagagtcggcaccataacgcttatatcgaactcacgttattataaagacgtcgaactgacgttaaaaagctttagggcactatgtgta Find is-nt database================================================ Query_seq: PG1881:PG1884|PG1881:PG1884:hypothetical protein:alpha-L-fucosidase precursor, putative:-><-:1978107..1979057 951 gaaggctctgagagacaaacaggcaacttactttgcaaactttcggagccgacaagcttcagcgagccggacgtatcacacggcatgattcccatagtccagcatccctgccggaatatgatgtgtgactacgcttccggctccaatgacggctccccctctccgatgtttacacccggcaggctgtaggtttgaaccagcctcgtattataacgtcagttcgacgtaagaaaacgccaatgaataattcttttcctgatcagaggctaatgccctaaaattctcagacaaataggggtaccctgcttctgcttggatcgaaccaacattgaaattcggattgcttttttgaccgaatgttacagtccgtacagaaagatgggctataccatagggcacatggaggtactccgtaggggatgacgagctatcccgtacagctcttcgagctacgctgtagagctcagcgaggtacgccctacagcgtagcgagccgagccgtagagttccgctccgggagctgtagaggtggccgagccgagccctagagcccggcgcgccgagccctacagcgtagctcgaagagccgtagagcgcagctcggtacgctctacggcgtagcccgagtcgctgtagggcgtagctcgaccccctttcggagtatgttccgaacggctataaaacaatgcggattcgatccaagaaaaacatgcaatatgctgtttgtcaacgtatttcatttctcggttgagagatttcagcttcgggagacttcgacatccgatgagacgtcaaattttttccctttcattttctgatcggttatagttaacccaacaaaggattgatcgacaaatacttatgagagtcggcaccataacgcttatatcgaactcacgttattataaagacgtcgaactgacgttaaaaagctttagggcactatgtgta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PG1881:PG1884|PG1881:PG1884:hypothetical protein:alpha-L-fucosidase precursor, putative:-><-:1978107..1979057 951 gaaggctctgagagacaaacaggcaacttactttgcaaactttcggagccgacaagcttcagcgagccggacgtatcacacggcatgattcccatagtccagcatccctgccggaatatgatgtgtgactacgcttccggctccaatgacggctccccctctccgatgtttacacccggcaggctgtaggtttgaaccagcctcgtattataacgtcagttcgacgtaagaaaacgccaatgaataattcttttcctgatcagaggctaatgccctaaaattctcagacaaataggggtaccctgcttctgcttggatcgaaccaacattgaaattcggattgcttttttgaccgaatgttacagtccgtacagaaagatgggctataccatagggcacatggaggtactccgtaggggatgacgagctatcccgtacagctcttcgagctacgctgtagagctcagcgaggtacgccctacagcgtagcgagccgagccgtagagttccgctccgggagctgtagaggtggccgagccgagccctagagcccggcgcgccgagccctacagcgtagctcgaagagccgtagagcgcagctcggtacgctctacggcgtagcccgagtcgctgtagggcgtagctcgaccccctttcggagtatgttccgaacggctataaaacaatgcggattcgatccaagaaaaacatgcaatatgctgtttgtcaacgtatttcatttctcggttgagagatttcagcttcgggagacttcgacatccgatgagacgtcaaattttttccctttcattttctgatcggttatagttaacccaacaaaggattgatcgacaaatacttatgagagtcggcaccataacgcttatatcgaactcacgttattataaagacgtcgaactgacgttaaaaagctttagggcactatgtgta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PG1881:PG1884|PG1881:PG1884:hypothetical protein:alpha-L-fucosidase precursor, putative:-><-:1978107..1979057 951 gaaggctctgagagacaaacaggcaacttactttgcaaactttcggagccgacaagcttcagcgagccggacgtatcacacggcatgattcccatagtccagcatccctgccggaatatgatgtgtgactacgcttccggctccaatgacggctccccctctccgatgtttacacccggcaggctgtaggtttgaaccagcctcgtattataacgtcagttcgacgtaagaaaacgccaatgaataattcttttcctgatcagaggctaatgccctaaaattctcagacaaataggggtaccctgcttctgcttggatcgaaccaacattgaaattcggattgcttttttgaccgaatgttacagtccgtacagaaagatgggctataccatagggcacatggaggtactccgtaggggatgacgagctatcccgtacagctcttcgagctacgctgtagagctcagcgaggtacgccctacagcgtagcgagccgagccgtagagttccgctccgggagctgtagaggtggccgagccgagccctagagcccggcgcgccgagccctacagcgtagctcgaagagccgtagagcgcagctcggtacgctctacggcgtagcccgagtcgctgtagggcgtagctcgaccccctttcggagtatgttccgaacggctataaaacaatgcggattcgatccaagaaaaacatgcaatatgctgtttgtcaacgtatttcatttctcggttgagagatttcagcttcgggagacttcgacatccgatgagacgtcaaattttttccctttcattttctgatcggttatagttaacccaacaaaggattgatcgacaaatacttatgagagtcggcaccataacgcttatatcgaactcacgttattataaagacgtcgaactgacgttaaaaagctttagggcactatgtgta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 gaaggctctgagagacaaacaggcaacttactttgcaaactttcggagccgacaagcttcagcgagccggacgtatcacacggcatgattcccatagtccagcatccctgccggaatatgatgtgtgactacgcttccggctccaatgacggctccccctctccgatgtttacacccggcaggctgtaggtttgaaccagcctcgtattataacgtcagttcgacgtaagaaaacgccaatgaataattcttttcctgatcagaggctaatgccctaaaattctcagacaaataggggtaccctgcttctgcttggatcgaaccaacattgaaattcggattgcttttttgaccgaatgttacagtccgtacagaaagatgggctataccatagggcacatggaggtactccgtaggggatgacgagctatcccgtacagctcttcgagctacgctgtagagctcagcgaggtacgccctacagcgtagcgagccgagccgtagagttccgctccgggagctgtagaggtggccgagccgagccctagagcccggcgcgccgagccctacagcgtagctcgaagagccgtagagcgcagctcggtacgctctacggcgtagcccgagtcgctgtagggcgtagctcgaccccctttcggagtatgttccgaacggctataaaacaatgcggattcgatccaagaaaaacatgcaatatgctgtttgtcaacgtatttcatttctcggttgagagatttcagcttcgggagacttcgacatccgatgagacgtcaaattttttccctttcattttctgatcggttatagttaacccaacaaaggattgatcgacaaatacttatgagagtcggcaccataacgcttatatcgaactcacgttattataaagacgtcgaactgacgttaaaaagctttagggcactatgtgta Predict ORF larger than 30AA ================================================ Protein_Len: 31 Strand: + Start: 33 End: 125 ................................ M Q T F G A D K L Q R A G R I T R H D S H S P A S L P E Y D V .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 34 Strand: + Start: 85 End: 186 .................................................................................... M I P I V Q H P C R N M M C D Y A S G S N D G S P S P M F T P G R L ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 34 Strand: + Start: 125 End: 226 ............................................................................................................................ M T T L P A P M T A P P L R C L H P A G C R F E P A S Y Y N V S S T ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 47 Strand: + Start: 280 End: 420 ....................................................................................................................................................................................................................................................................................... M L R Q I G V P C F C L D R T N I E I R I A F L T E C Y S P Y R K M G Y T I G H M E V L R R G ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 42 Strand: + Start: 420 End: 545 ................................................................................................................................................................................................................................................................................................................................................................................................................................... M T S Y P V Q L F E L R C R A Q R G T P Y S V A S R A V E F R S G S C R G G R A E P ...................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 30 Strand: + Start: 529 End: 618 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ M A E P S P R A R R A E P Y S V A R R A V E R S S V R S T A ............................................................................................................................................................................................................................................................................................................................................. Protein_Len: 51 Strand: + Start: 663 End: 815 ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M F R T A I K Q C G F D P R K T C N M L F V N V F H F S V E R F Q L R E T S T S D E T S N F F P F I F ........................................................................................................................................ Protein_Len: 43 Strand: + Start: 697 End: 825 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ M Q E K H A I C C L S T Y F I S R L R D F S F G R L R H P M R R Q I F S L S F S D R L .............................................................................................................................. Protein_Len: 36 Strand: + Start: 844 End: 951 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M D R Q I L M R V G T I T L I S N S R Y Y K D V E L T L K S F R A L C V Protein_Len: 31 Strand: - Start: 795 End: 887 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... I K E R E N E S R N Y N V W C L I S R C I S I L T P V M V S M ................................................................ Protein_Len: 39 Strand: - Start: 614 End: 730 ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... P T A R T A T P R L E V G K R L I N R V A I F C H P N S G L F V H L I S N T M ............................................................................................................................................................................................................................. Protein_Len: 60 Strand: - Start: 570 End: 785 ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... R E V A Y G S D S Y P T A R G G K P T H E S R S Y F L A S E I W S F C A I H Q K D V Y K M E R N L S K L K P L S R C G M ...................................................................................................................................................................... Protein_Len: 45 Strand: - Start: 287 End: 421 .............................................................................................................................................................................................................................................................................................. V F L P V R S R S P D F W C Q F E S Q K K S R I N C D T C F S P S Y W L A C P P V G Y P M .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 60 Strand: - Start: 211 End: 399 .................................................................................................................................................................................................................. E V Y S F A L S Y N K E Q D S A L A R F N E S L Y P Y G A E A Q I S G V N F N P N S K Q G F T V T R V S L H A I G Y P M ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 40 Strand: - Start: 3 End: 122 .. P E S L C V P L K S Q L S E S G V L K L S G S T D C P M I G M T W C G Q R F I M ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. gaaggctctgagagacaaacaggcaacttactttgcaaactttcggagccgacaagcttcagcgagccggacgtatcacacggcatgattcccatagtccagcatccctgccggaatatgatgtgtgactacgcttccggctccaatgacggctccccctctccgatgtttacacccggcaggctgtaggtttgaaccagcctcgtattataacgtcagttcgacgtaagaaaacgccaatgaataattcttttcctgatcagaggctaatgccctaaaattctcagacaaataggggtaccctgcttctgcttggatcgaaccaacattgaaattcggattgcttttttgaccgaatgttacagtccgtacagaaagatgggctataccatagggcacatggaggtactccgtaggggatgacgagctatcccgtacagctcttcgagctacgctgtagagctcagcgaggtacgccctacagcgtagcgagccgagccgtagagttccgctccgggagctgtagaggtggccgagccgagccctagagcccggcgcgccgagccctacagcgtagctcgaagagccgtagagcgcagctcggtacgctctacggcgtagcccgagtcgctgtagggcgtagctcgaccccctttcggagtatgttccgaacggctataaaacaatgcggattcgatccaagaaaaacatgcaatatgctgtttgtcaacgtatttcatttctcggttgagagatttcagcttcgggagacttcgacatccgatgagacgtcaaattttttccctttcattttctgatcggttatagttaacccaacaaaggattgatcgacaaatacttatgagagtcggcaccataacgcttatatcgaactcacgttattataaagacgtcgaactgacgttaaaaagctttagggcactatgtgta Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: - Score: 82 Start: 902 End: 931 .....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTAACGTCAGTTCGACGTCTTTATAAT.................... Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ gaaggctctgagagacaaacaggcaacttactttgcaaactttcggagccgacaagcttcagcgagccggacgtatcacacggcatgattcccatagtccagcatccctgccggaatatgatgtgtgactacgcttccggctccaatgacggctccccctctccgatgtttacacccggcaggctgtaggtttgaaccagcctcgtattataacgtcagttcgacgtaagaaaacgccaatgaataattcttttcctgatcagaggctaatgccctaaaattctcagacaaataggggtaccctgcttctgcttggatcgaaccaacattgaaattcggattgcttttttgaccgaatgttacagtccgtacagaaagatgggctataccatagggcacatggaggtactccgtaggggatgacgagctatcccgtacagctcttcgagctacgctgtagagctcagcgaggtacgccctacagcgtagcgagccgagccgtagagttccgctccgggagctgtagaggtggccgagccgagccctagagcccggcgcgccgagccctacagcgtagctcgaagagccgtagagcgcagctcggtacgctctacggcgtagcccgagtcgctgtagggcgtagctcgaccccctttcggagtatgttccgaacggctataaaacaatgcggattcgatccaagaaaaacatgcaatatgctgtttgtcaacgtatttcatttctcggttgagagatttcagcttcgggagacttcgacatccgatgagacgtcaaattttttccctttcattttctgatcggttatagttaacccaacaaaggattgatcgacaaatacttatgagagtcggcaccataacgcttatatcgaactcacgttattataaagacgtcgaactgacgttaaaaagctttagggcactatgtgta Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 39 HP_score: -2.4 Tail_Score: -2.79116 Start: 23 End: 36 Full_Region: cggctccgaaagttt gcaa agtaag ttgc ctgtttgtctctcag ......................gcaaagtaagttgc................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 100 HP_score: -16.7 Tail_Score: -3.04263 Start: 586 End: 617 Full_Region: agcgactcgggctac gccgtagagcgta ccgagc tgcgctctacggc tcttcgagctacgct .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gccgtagagcgtaccgagctgcgctctacggc.............................................................................................................................................................................................................................................................................................................................................. Find igs database================================================ Query_seq: PG1881:PG1884|PG1881:PG1884:hypothetical protein:alpha-L-fucosidase precursor, putative:-><-:1978107..1979057 951 gaaggctctgagagacaaacaggcaacttactttgcaaactttcggagccgacaagcttcagcgagccggacgtatcacacggcatgattcccatagtccagcatccctgccggaatatgatgtgtgactacgcttccggctccaatgacggctccccctctccgatgtttacacccggcaggctgtaggtttgaaccagcctcgtattataacgtcagttcgacgtaagaaaacgccaatgaataattcttttcctgatcagaggctaatgccctaaaattctcagacaaataggggtaccctgcttctgcttggatcgaaccaacattgaaattcggattgcttttttgaccgaatgttacagtccgtacagaaagatgggctataccatagggcacatggaggtactccgtaggggatgacgagctatcccgtacagctcttcgagctacgctgtagagctcagcgaggtacgccctacagcgtagcgagccgagccgtagagttccgctccgggagctgtagaggtggccgagccgagccctagagcccggcgcgccgagccctacagcgtagctcgaagagccgtagagcgcagctcggtacgctctacggcgtagcccgagtcgctgtagggcgtagctcgaccccctttcggagtatgttccgaacggctataaaacaatgcggattcgatccaagaaaaacatgcaatatgctgtttgtcaacgtatttcatttctcggttgagagatttcagcttcgggagacttcgacatccgatgagacgtcaaattttttccctttcattttctgatcggttatagttaacccaacaaaggattgatcgacaaatacttatgagagtcggcaccataacgcttatatcgaactcacgttattataaagacgtcgaactgacgttaaaaagctttagggcactatgtgta Intra-Species Hit: Count: 7 Min: 1 Max: 951 Len: 951 Subject: NC_002950_PG1881_PG1884|hypothetical protein:alpha-L-fucosidase precursor, putative|POSITIVE:NEGATIVE|[1978107,1979057]|951 HSP 1 e-value: 0.0 bit: 1885.0 Len: 951 Query Start:1 Query End:951 Subject Strand: POSITIVE Subject Start: 1 Subject End: 951 gaaggctctgagagacaaacaggcaacttactttgcaaactttcggagccgacaagcttcagcgagccggacgtatcacacggcatgattcccatagtccagcatccctgccggaatatgatgtgtgactacgcttccggctccaatgacggctccccctctccgatgtttacacccggcaggctgtaggtttgaaccagcctcgtattataacgtcagttcgacgtaagaaaacgccaatgaataattcttttcctgatcagaggctaatgccctaaaattctcagacaaataggggtaccctgcttctgcttggatcgaaccaacattgaaattcggattgcttttttgaccgaatgttacagtccgtacagaaagatgggctataccatagggcacatggaggtactccgtaggggatgacgagctatcccgtacagctcttcgagctacgctgtagagctcagcgaggtacgccctacagcgtagcgagccgagccgtagagttccgctccgggagctgtagaggtggccgagccgagccctagagcccggcgcgccgagccctacagcgtagctcgaagagccgtagagcgcagctcggtacgctctacggcgtagcccgagtcgctgtagggcgtagctcgaccccctttcggagtatgttccgaacggctataaaacaatgcggattcgatccaagaaaaacatgcaatatgctgtttgtcaacgtatttcatttctcggttgagagatttcagcttcgggagacttcgacatccgatgagacgtcaaattttttccctttcattttctgatcggttatagttaacccaacaaaggattgatcgacaaatacttatgagagtcggcaccataacgcttatatcgaactcacgttattataaagacgtcgaactgacgttaaaaagctttagggcactatgtgta gaaggctctgagagacaaacaggcaacttactttgcaaactttcggagccgacaagcttcagcgagccggacgtatcacacggcatgattcccatagtccagcatccctgccggaatatgatgtgtgactacgcttccggctccaatgacggctccccctctccgatgtttacacccggcaggctgtaggtttgaaccagcctcgtattataacgtcagttcgacgtaagaaaacgccaatgaataattcttttcctgatcagaggctaatgccctaaaattctcagacaaataggggtaccctgcttctgcttggatcgaaccaacattgaaattcggattgcttttttgaccgaatgttacagtccgtacagaaagatgggctataccatagggcacatggaggtactccgtaggggatgacgagctatcccgtacagctcttcgagctacgctgtagagctcagcgaggtacgccctacagcgtagcgagccgagccgtagagttccgctccgggagctgtagaggtggccgagccgagccctagagcccggcgcgccgagccctacagcgtagctcgaagagccgtagagcgcagctcggtacgctctacggcgtagcccgagtcgctgtagggcgtagctcgaccccctttcggagtatgttccgaacggctataaaacaatgcggattcgatccaagaaaaacatgcaatatgctgtttgtcaacgtatttcatttctcggttgagagatttcagcttcgggagacttcgacatccgatgagacgtcaaattttttccctttcattttctgatcggttatagttaacccaacaaaggattgatcgacaaatacttatgagagtcggcaccataacgcttatatcgaactcacgttattataaagacgtcgaactgacgttaaaaagctttagggcactatgtgta Subject: NC_002950_PG1190_PG1195|glycerate dehydrogenase:8-amino-7-oxononanoate synthase|POSITIVE:POSITIVE|[1273206,1274118]|913 HSP 1 e-value: 0.0 bit: 763.0 Len: 528 Query Start:302 Query End:829 Subject Strand: NEGATIVE Subject Start: 156 Subject End: 681 .............................................................................................................................................................................................................................................................................................................cctgcttctgcttggatcgaaccaacattgaaattcggattgcttttttgaccgaatgttacagtccgtacagaaagatgggctataccatagggcacatggaggtactccgtaggggatgacgagctatcccgtacagctcttcgagctacgctgtagagctcagcgaggtacgccctacagcgtagcgagccgagccgtagagttccgctccgggagctgtagaggtggccgagccgagccctagagcccggcgcgccgagccctacagcgtagctcgaagagccgtagagcgcagctcggtacgctctacggcgtagcccgagtcgctgtagggcgtagctcgaccccctttcggagtatgttccgaacggctataaaacaatgcggattcgatccaagaaaaacatgcaatatgctgtttgtcaacgtatttcatttctcggttgagagatttcagcttcgggagacttcgacatccgatgagacgtcaaattttttccctttcattttctgatcggttatagt.......................................................................................................................... .............................................................................................................................................................................................................................................................................................................cctgcttctgcctggatcgaaccaacattgaaattcggattgctttt--gaccgaatgttgcagtccgtatagggagatgggctataccacagggcagatggcggtactccgtagaggatgacgagctatcccgtacggctcttcgagctacgctgtagagctcggcgaggtacgccctacagcgtagcgagccgagccgtagagttccgctccgtgagccgtagaggtggccgagctgagccgtagggcccggcgcggtgagccctacagcgtagctcgaagagccgtagagcgcagctcggtacgctctacggcgtagcccgagtcgctgtagggcgtagctcgaccccccttcggcatatgttccgaacggctataaaacaatgcggattcaatccaggaaaaatatgcaatatgctgtttatcagcatatttcatttctcagttgaaagatttcagcttcgagaggcttcgacatccgatgagacttcaaactttttccctttcattttctgatcggttatagt.......................................................................................................................... HSP 2 e-value: 2.0E-7 bit: 60.0 Len: 34 Query Start:558 Query End:591 Subject Strand: POSITIVE Subject Start: 516 Subject End: 549 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cgccgagccctacagcgtagctcgaagagccgta........................................................................................................................................................................................................................................................................................................................................................................ .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cgccgagctctacagcgtagctcgaagagccgta........................................................................................................................................................................................................................................................................................................................................................................ HSP 3 e-value: 2.0E-6 bit: 56.0 Len: 32 Query Start:211 Query End:242 Subject Strand: NEGATIVE Subject Start: 766 Subject End: 797 ..................................................................................................................................................................................................................taacgtcagttcgacgtaagaaaacgccaatg..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ..................................................................................................................................................................................................................taacgtcagttcggcgtaagaaaacgccaatg..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: NC_002950_PG0890_PG0893|alkaline phosphatase, putative:hydroxylamine reductase|POSITIVE:NEGATIVE|[953164,954290]|1127 HSP 1 e-value: 0.0 bit: 688.0 Len: 518 Query Start:302 Query End:819 Subject Strand: POSITIVE Subject Start: 305 Subject End: 820 .............................................................................................................................................................................................................................................................................................................cctgcttctgcttggatcgaaccaacattgaaattcggattgcttttttgaccgaatgttacagtccgtacagaaagatgggctataccatagggcacatggaggtactccgtaggggatgacgagctatcccgtacagctcttcgagctacgctgtagagctcagcgaggtacgccctacagcgtagcgagccgagccgtagagttccgctccgggagctgtagaggtggccgagccgagccctagagcccggcgcgccgagccctacagcgtagctcgaagagccgtagagcgcagctcggtacgctctacggcgtagcccgagtcgctgtagggcgtagctcgaccccctttcggagtatgttccgaacggctataaaacaatgcggattcgatccaagaaaaacatgcaatatgctgtttgtcaacgtatttcatttctcggttgagagatttcagcttcgggagacttcgacatccgatgagacgtcaaattttttccctttcattttctgat.................................................................................................................................... .............................................................................................................................................................................................................................................................................................................cctgcttctgcccggatcggaccaacattgaaattcggattgctttt--gaccgaatgttgcagtccgcaccggaagatgggctataccacaaggcagatggcggtattccgtagaggataacgggctatcccatacggctcttcgagctacgctgtagagctcggcgaggtacgctctacagcgtagcgagccgagccgtagagttccgctccgtgagccgtagatgtggccgagctgagccgtagggcccggcgcggtgagccctacagcgtagcttgaagagccgtagagcgcagctcggtacgctctacggcgtagcccgagtcgctgtagggcgtagctcgaccccctttcggcgtatgttccgaatggctataaaacaatgcggattcgatctgaagaaaatatgcaatatgctgtttgtcagcgtatttcatttctcggttgagaaatttcagcttcgagaggcttcgacatccgatgagacgtcaaactttttccctttcattttctgat.................................................................................................................................... HSP 2 e-value: 2.0E-7 bit: 60.0 Len: 34 Query Start:558 Query End:591 Subject Strand: NEGATIVE Subject Start: 437 Subject End: 470 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cgccgagccctacagcgtagctcgaagagccgta........................................................................................................................................................................................................................................................................................................................................................................ .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cgccgagctctacagcgtagctcgaagagccgta........................................................................................................................................................................................................................................................................................................................................................................ HSP 3 e-value: 2.0E-7 bit: 60.0 Len: 38 Query Start:864 Query End:901 Subject Strand: POSITIVE Subject Start: 848 Subject End: 885 ...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gagagtcggcaccataacgcttatatcgaactcacgtt.................................................. ...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gagagtcggcaccatatcgcttacatcgaactcacgtt.................................................. HSP 4 e-value: 2.0E-6 bit: 56.0 Len: 32 Query Start:211 Query End:242 Subject Strand: POSITIVE Subject Start: 189 Subject End: 220 ..................................................................................................................................................................................................................taacgtcagttcgacgtaagaaaacgccaatg..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ..................................................................................................................................................................................................................taacgtcagttcggcgtaagaaaacgccaatg..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: NC_002950_PG1297_PG1300|ribosomal protein S1:hypothetical protein|POSITIVE:NEGATIVE|[1377771,1378619]|849 HSP 1 e-value: 0.0 bit: 670.0 Len: 495 Query Start:302 Query End:796 Subject Strand: POSITIVE Subject Start: 240 Subject End: 734 .............................................................................................................................................................................................................................................................................................................cctgcttctgcttggatcgaaccaacattgaaattcggattgcttttttgaccgaatgttacagtccgtacagaaagatgggctataccatagggcac-atggaggtactccgtaggggatgacgagctatcccgtacagctcttcgagctacgctgtagagctcagcgaggtacgccctacagcgtagcgagccgagccgtagagttccgctccgggagctgtagaggtggccgagccgagccctagagcccggcgcgccgagccctacagcgtagctcgaagagccgtagagcgcagctcggtacgctctacggcgtagcccgagtcgctgtagggcgtagctcgaccccctttcggagtatgttccgaacggctataaaacaatgcggattcgatc-caagaaaaacatgcaatatgctgtttgtcaacgtatttcatttctcggttgagagatttcagcttcgggagacttcgacatccgatgagacgtcaaa........................................................................................................................................................... .............................................................................................................................................................................................................................................................................................................cctgcttttgcttggatcgaaccaacattgaaattcggattgctttt--gaccgaatgttgcagtccgtacagggagatgggctataccacagggcaagatggcggtactccatagaggataacgggctatcccgtacagctcttcgagctacgctgtagagcccggcgcggtgagccctacagcgtagcgagccgagccgtagagttccgctccgggagccgtagaggtggccgagctgagccgtagagcccggcgcagcgagccctacagcgtagctcgaagagccgtagagcgcagctcggtacgctctacggcgtagcccgagtcgctgtagggcgtagctcgaccccccttcggagtatattccgaacggctataaaacaatgaggattcgatctgaagaaaaacatgcaatatgctgtttgtcagcgtatttcacttctcagttcaaagatttcagcttcgagaggctccgacatccgatgagacgtcaaa........................................................................................................................................................... HSP 2 e-value: 2.0E-6 bit: 56.0 Len: 32 Query Start:211 Query End:242 Subject Strand: POSITIVE Subject Start: 124 Subject End: 155 ..................................................................................................................................................................................................................taacgtcagttcgacgtaagaaaacgccaatg..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ..................................................................................................................................................................................................................taacgtcagttcggcgtaagaaaacgccaatg..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: NC_002950_PG1837_PG1840|hemagglutinin protein HagA:hypothetical protein|POSITIVE:POSITIVE|[1936795,1937241]|447 HSP 1 e-value: 1.0E-137 bit: 492.0 Len: 324 Query Start:366 Query End:689 Subject Strand: NEGATIVE Subject Start: 107 Subject End: 430 .............................................................................................................................................................................................................................................................................................................................................................................tccgtacagaaagatgggctataccatagggcacatggaggtactccgtaggggatgacgagctatcccgtacagctcttcgagctacgctgtagagctcagcgaggtacgccctacagcgtagcgagccgagccgtagagttccgctccgggagctgtagaggtggccgagccgagccctagagcccggcgcgccgagccctacagcgtagctcgaagagccgtagagcgcagctcggtacgctctacggcgtagcccgagtcgctgtagggcgtagctcgaccccctttcggagtatgttccgaacggctataaaacaatgc...................................................................................................................................................................................................................................................................... .............................................................................................................................................................................................................................................................................................................................................................................tccgaacaggaagatgggctataccacagggcagatggtggtactccgtagaggataacgggctatcccgtacggctcttcgagctacgctgtagagctcagcgaggtacgctctacagcgtagcgagccgagccgtagagttccgctccgggagccgtagaggtggccgagctgagccgtagagcttggcgcggtgagccctacagcgtagctcgaagagccgtagagcgcagctcggtacgctctacggcgtagcccgagtcgctgtagggcgtagctcgacccccttccggagtatattccgaacggctataaaacaatgc...................................................................................................................................................................................................................................................................... Subject: NC_002950_PG1954_PG1956|NAD dependent epimerase/reductase-related protein:4-hydroxybutyrate CoA-transferase|POSITIVE:NEGATIVE|[2045673,2046304]|632 HSP 1 e-value: 1.0E-118 bit: 428.0 Len: 263 Query Start:567 Query End:829 Subject Strand: POSITIVE Subject Start: 237 Subject End: 500 ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ctacagcgtagctcgaagagccgtagagcgcagctcggtacgctctacggcgtagcccgagtcgctgtagggcgtagctcgaccccctttcggagtatgttccgaacggctataaaacaatgcggattcgatccaagaaaaacatgcaatatgctgtttgtcaacgtatttcatttctcggttgagagatttcagcttcgggagacttcgacatccgatgagacgtcaaattttttccctttcattttctga-tcggttatagt.......................................................................................................................... ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ctacagcgtagctcgaagagccgtagagcgcagctcggtacgctctacggcgtagcccgagtcgctgtagggcgtagctcgaccccctttcggcgtatgttccgaacggctataaaacaatgcggattcgatccaagaaaaacatgcaatatgctgtttgtcaatgtatttcatttgtctgttgagaggtttcagcttcgagaggctccgacgtccgatgagacgtcaaactttttccctttcattttctgattcggttatagt.......................................................................................................................... HSP 2 e-value: 4.0E-51 bit: 204.0 Len: 135 Query Start:356 Query End:490 Subject Strand: POSITIVE Subject Start: 114 Subject End: 248 ...................................................................................................................................................................................................................................................................................................................................................................aatgttacagtccgtacagaaagatgggctataccatagggcacatggaggtactccgtaggggatgacgagctatcccgtacagctcttcgagctacgctgtagagctcagcgaggtacgccctacagcgtagc............................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ...................................................................................................................................................................................................................................................................................................................................................................aatgttacagtccgtacagaaagatgggctataccatagggcagatggcggtacaccatagaggatgacgagctatcccgtacggctcttcgagctacgctgtagagctcggcgaggtacgctctacagcgtagc............................................................................................................................................................................................................................................................................................................................................................................................................................................................................. HSP 3 e-value: 2.0E-7 bit: 60.0 Len: 34 Query Start:558 Query End:591 Subject Strand: NEGATIVE Subject Start: 194 Subject End: 227 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cgccgagccctacagcgtagctcgaagagccgta........................................................................................................................................................................................................................................................................................................................................................................ .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cgccgagctctacagcgtagctcgaagagccgta........................................................................................................................................................................................................................................................................................................................................................................ Subject: NC_002950_PG0237_PG0240|uracil-DNA glycosylase:hydrolase, haloacid dehalogenase-like family|POSITIVE:NEGATIVE|[275587,276484]|898 HSP 1 e-value: 1.0E-101 bit: 371.0 Len: 246 Query Start:584 Query End:829 Subject Strand: POSITIVE Subject Start: 448 Subject End: 694 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gagccgtagagcgcagctcggtacgctctacggcgtagcccgagtcgctgtagggcgtagctcgaccccctttcggagtatgttccgaacggctataaaacaatgcggattcgatccaagaaaaacatgcaatatgctgtttgtcaacgtatttcatttctcggttgagagatttcagcttcgggagacttcgacatccgatgagacgtcaaattttttccctttcattttctga-tcggttatagt.......................................................................................................................... .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gagccgtagagcgcagctcggtacgctctacggcgtagcccgagtcgctgtagggcgtagctcgaccccctttcggcgtatgttccgaatggctataaaacaatgcggattcgatctgaagaaaatatgcaatatcctgtttgtcagcgtatttcatttctcggttgagagatttcagcttcgagaggcttcgacatccaatgagacgtcaaactttttccctttcattttctgattcggttatagt.......................................................................................................................... HSP 2 e-value: 3.0E-98 bit: 361.0 Len: 250 Query Start:302 Query End:551 Subject Strand: POSITIVE Subject Start: 210 Subject End: 459 .............................................................................................................................................................................................................................................................................................................cctgcttctgcttggatcgaaccaacattgaaattcggattgcttttttgaccgaatgttacagtccgtacagaaagatgggctataccatagggcacatggaggtactccgtaggggatgacgagctatcccgtacagctcttcgagctacgctgtagagctcagcgaggtacgccctacagcgtagcgagccgagccgtagagttccgctccgggagctgtagaggtggccgagccgagccctagagc................................................................................................................................................................................................................................................................................................................................................................................................................ .............................................................................................................................................................................................................................................................................................................cctgcttctgcccggatcgaaccaacattgaaattcggattgcttttttgaccgaatgttgcagtccgtacaggaagatgggctataccacaaggcagatggcggtacaccgtagaggataacgggctatcccgtacagctcttcgagctacgctgtagagctcggcgaggtacgctctacagcgtagcgagccgagccgtagagttccgctccgggagccgtagaggtggccgagctgagccgtagagc................................................................................................................................................................................................................................................................................................................................................................................................................ Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ GAAGGCUCUGAGAGACAAACAGGCAACUUACUUUGCAAACUUUCGGAGCCGACAAGCUUCAGCGAGCCGGACGUAUCACACGGCAUGAUUCCCAUAGUCCAGCAUCCCUGCCGGAAUAUGAUGUGUGACUACGCUUCCGGCUCCAAUGACGGCUCCCCCUCUCCGAUGUUUACACCCGGCAGGCUGUAGGUUUGAACCAGCCUCGUAUUAUAACGUCAGUUCGACGUAAGAAAACGCCAAUGAAUAAUUCUUUUCCUGAUCAGAGGCUAAUGCCCUAAAAUUCUCAGACAAAUAGGGGUACCCUGCUUCUGCUUGGAUCGAACCAACAUUGAAAUUCGGAUUGCUUUUUUGACCGAAUGUUACAGUCCGUACAGAAAGAUGGGCUAUACCAUAGGGCACAUGGAGGUACUCCGUAGGGGAUGACGAGCUAUCCCGUACAGCUCUUCGAGCUACGCUGUAGAGCUCAGCGAGGUACGCCCUACAGCGUAGCGAGCCGAGCCGUAGAGUUCCGCUCCGGGAGCUGUAGAGGUGGCCGAGCCGAGCCCUAGAGCCCGGCGCGCCGAGCCCUACAGCGUAGCUCGAAGAGCCGUAGAGCGCAGCUCGGUACGCUCUACGGCGUAGCCCGAGUCGCUGUAGGGCGUAGCUCGACCCCCUUUCGGAGUAUGUUCCGAACGGCUAUAAAACAAUGCGGAUUCGAUCCAAGAAAAACAUGCAAUAUGCUGUUUGUCAACGUAUUUCAUUUCUCGGUUGAGAGAUUUCAGCUUCGGGAGACUUCGACAUCCGAUGAGACGUCAAAUUUUUUCCCUUUCAUUUUCUGAUCGGUUAUAGUUAACCCAACAAAGGAUUGAUCGACAAAUACUUAUGAGAGUCGGCACCAUAACGCUUAUAUCGAACUCACGUUAUUAUAAAGACGUCGAACUGACGUUAAAAAGCUUUAGGGCACUAUGUGUA ...(((((((((((.((((.((....))...))))....)))))))))))..((((((((((((((((((((((((((((((..........((((.(((.(((....))).))).)))).))))))).))))..))))))))....((.((....)).)).(((.((....))..)))...)))).))))))).....((((.((.((.(((((((((((((((((........(((..(((.(((((((((....((((((((((....))).......((((((((((((((((....)).((.....(((((((((((.(..(((((..((((((.((........)))))))).(((.((.((((...(....((((......))))....)...(((((((((((((.(((((....((((((((.((.((((((.((((((((((((((((((.((((.(((.(((.(((((((((((...(.((((.((((......)))).)))))....))))))).)))))))..((((.((......)).)))).))).)))).)))))))))))))))))).(((((((((((..........)))))))))))............)))))).)).))))))))..)))))..)))))))).))))).)))))).)))..)))))..).)))))))))))........))......)))))))))...((......(((((((((((((....))))))..))))))).....))......)))))........................)))))))(((((....)))))....))))))))).)))......((((....)))).)))..........(((((...(((....)))..)))))..))))))))))))))))).)).))....)))).......... (-371.52) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UACACAUAGUGCCCUAAAGCUUUUUAACGUCAGUUCGACGUCUUUAUAAUAACGUGAGUUCGAUAUAAGCGUUAUGGUGCCGACUCUCAUAAGUAUUUGUCGAUCAAUCCUUUGUUGGGUUAACUAUAACCGAUCAGAAAAUGAAAGGGAAAAAAUUUGACGUCUCAUCGGAUGUCGAAGUCUCCCGAAGCUGAAAUCUCUCAACCGAGAAAUGAAAUACGUUGACAAACAGCAUAUUGCAUGUUUUUCUUGGAUCGAAUCCGCAUUGUUUUAUAGCCGUUCGGAACAUACUCCGAAAGGGGGUCGAGCUACGCCCUACAGCGACUCGGGCUACGCCGUAGAGCGUACCGAGCUGCGCUCUACGGCUCUUCGAGCUACGCUGUAGGGCUCGGCGCGCCGGGCUCUAGGGCUCGGCUCGGCCACCUCUACAGCUCCCGGAGCGGAACUCUACGGCUCGGCUCGCUACGCUGUAGGGCGUACCUCGCUGAGCUCUACAGCGUAGCUCGAAGAGCUGUACGGGAUAGCUCGUCAUCCCCUACGGAGUACCUCCAUGUGCCCUAUGGUAUAGCCCAUCUUUCUGUACGGACUGUAACAUUCGGUCAAAAAAGCAAUCCGAAUUUCAAUGUUGGUUCGAUCCAAGCAGAAGCAGGGUACCCCUAUUUGUCUGAGAAUUUUAGGGCAUUAGCCUCUGAUCAGGAAAAGAAUUAUUCAUUGGCGUUUUCUUACGUCGAACUGACGUUAUAAUACGAGGCUGGUUCAAACCUACAGCCUGCCGGGUGUAAACAUCGGAGAGGGGGAGCCGUCAUUGGAGCCGGAAGCGUAGUCACACAUCAUAUUCCGGCAGGGAUGCUGGACUAUGGGAAUCAUGCCGUGUGAUACGUCCGGCUCGCUGAAGCUUGUCGGCUCCGAAAGUUUGCAAAGUAAGUUGCCUGUUUGUCUCUCAGAGCCUUC (((.......((((..........(((((((((((((((((.........(((((.(((..((((.....((((((((..((((..............))))...(((((......))))).)))))))).(((((((........((((.(...((((((((((....)))))))))).).))))....(((((((.(((((..((((..(((.((((.((((.....)))).)))).)))(((((((((((((((((((.((((((..((((((((((.(((((..(((((((..((((((((((((((..(((((((((............(((((((((((((......))))))))))))).(((((((((((((((((((((((((((.((((((((....))))))))..((..(((((((((((.....((((.((.((....)).)).)))).....))))))))).)).)).))))))))))))))))))))))))))).)))))).))).)))))))..))))))).)))))))......((((((....))))))........))))).)))).)))))).((((((.............))))))..)))))).))))))))))))).)))))).(((...)))..))))..))))))))))))(((....))))))))))...........)))).))).))))).....))))))))))))))))).......((((((...........))))))...))))((((((.((((((..((.((((..(((...(((((((..(((((.((((((.(((((.(((((((....))))))).)))))..........))))))))))))))))))..))).)))).))..))))))..))))))...)))....(((((.........))).)).... (-407.70) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 989 480 431 223 174 NC_002950:PG1840|5end_hypothetical_protein_1937102..1937332_POSITIVE 603 565 522 71 16 NC_002950:PG2038|5end_N-acetylmuramoyl-L-alanine_amidase,_putative_2138207..2138437_NEGATIVE 525 580 531 213 147 NC_002950:PG1185|5end_hypothetical_protein_1267752..1267982_NEGATIVE 524 566 522 199 146 NC_002950:PG0607|5end_hypothetical_protein_662552..662782_POSITIVE 524 559 511 206 139 NC_002950:PG0071|5end_UDP-3-O-acyl-GlcNAc_deacetylase/beta-hydroxyacyl-[acyl_carrier_protein]_dehydratase_FabZ_86119..86349_NEGATIVE 511 566 525 207 165 NC_002950:PG0137|5end_aminoacyl-histidine_dipeptidase_159104..159334_POSITIVE 509 618 573 212 152 NC_002950:PG0854|5end_hypothetical_protein_914870..915100_POSITIVE 507 570 526 64 14 NC_002950:PG1992|5end_glucose-inhibited_division_protein_A_2081410..2081640_POSITIVE 494 580 533 163 114 NC_002950:PG0657|5end_Maf-like_protein_707782..708012_NEGATIVE 492 539 493 111 59 NC_002950:PG0145|5end_hypothetical_protein_167831..168061_POSITIVE 487 660 614 209 147 NC_002950:PG0595|5end_30S_ribosomal_protein_S6_653008..653238_POSITIVE 482 590 544 197 151 NC_002950:PG0158|5end_competence_protein_F-related_protein_180175..180405_POSITIVE 479 539 495 211 159 NC_002950:PG0201|5end_ribonuclease_P_238770..239000_NEGATIVE 478 559 511 194 138 NC_002950:PG1479|5end_conjugative_transposon_protein_TraJ_1555234..1555464_NEGATIVE 478 578 531 78 24 NC_002950:PG1434|5end_2-C-methyl-D-erythritol_4-phosphate_cytidylyltransferase_1519022..1519252_POSITIVE 474 559 513 229 177 NC_002950:PG1498|5end_hypothetical_protein_1574656..1574886_POSITIVE 469 560 515 148 100 NC_002950:PG1691|5end_hypothetical_protein_1776484..1776714_NEGATIVE 468 556 515 49 5 NC_002950:PG0322|5end_serine/threonine_transporter_355708..355938_POSITIVE 466 589 543 57 3 NC_002950:PG1701|5end_glutamine_amidotransferase,_class_II/dipeptidase_1787953..1788183_NEGATIVE 463 529 489 183 135 NC_002950:PG0327|5end_hypothetical_protein_362061..362291_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 724 900 859 86 45 NC_002950:PG1175|3end_ABC_transporter,_ATP-binding_protein,_putative_1254170..1254320_NEGATIVE 606 459 411 52 5 NC_002950:PG0261|3end_ISPg3,_transposase_293862..294012_NEGATIVE 494 580 533 147 98 NC_002950:PG0658|3end_phosphatase,_YrbI_family_707798..707948_NEGATIVE 487 660 614 112 50 NC_002950:PG0594|3end_RNA_polymerase_sigma-70_factor_652991..653141_POSITIVE 480 630 586 104 51 NC_002950:PG1012|3end_tRNA-i(6)A37_modification_enzyme_MiaB_1070089..1070239_NEGATIVE 478 578 531 102 48 NC_002950:PG1433|3end_hydrolase_1519126..1519276_POSITIVE 474 559 513 128 76 NC_002950:PG1497|3end_DNA-binding_protein,_histone-like_family_1574635..1574785_POSITIVE 469 560 515 118 70 NC_002950:PG1692|3end_ABC_transporter,_ATP-binding_protein_1776514..1776664_NEGATIVE 466 589 543 64 10 NC_002950:PG1702|3end_DNA_gyrase,_B_subunit_1787946..1788096_NEGATIVE 463 529 489 89 41 NC_002950:PG0328|3end_imidazolonepropionase_362155..362305_NEGATIVE 459 579 531 148 94 NC_002950:PG1608|3end_methylmalonyl-CoA_decarboxylase,_beta_subunit_1688685..1688835_NEGATIVE 455 590 547 84 29 NC_002950:PG1271|3end_acetylornithine_aminotransferase,_putative_1350214..1350364_NEGATIVE 451 540 493 66 11 NC_002950:PG1816|3end_NAD(P)H_dehydrogenase,_quinone_family,_putative_1911430..1911580_NEGATIVE 450 530 482 87 35 NC_002950:PG0459|3end_ISPg5,_transposase_Orf1_501517..501667_NEGATIVE 444 50 5 151 103 NC_002950:PG1316|3end_hypothetical_protein_1396241..1396391_NEGATIVE 440 578 531 109 46 NC_002950:PG1391|3end_hypothetical_protein_1472961..1473111_POSITIVE 440 540 492 130 79 NC_002950:PG0745|3end_lactoylglutathione_lyase,_putative_791982..792132_NEGATIVE 438 630 586 138 85 NC_002950:PG0569|3end_hypothetical_protein_624697..624847_NEGATIVE 436 570 526 134 82 NC_002950:PG1975|3end_hemagglutinin_protein_HagC_2064350..2064500_POSITIVE 435 500 453 138 89 NC_002950:PG1270|3end_hypothetical_protein_1349278..1349428_NEGATIVE