Origin IGS: gcgataaaacttttcgcaagacctgcaaacagataaggcacgcactcgattcgtggtggaatcgggtgcgtgcctcttttatataagctcgggaatgggccttttgagccgtccgaactatatataaatcagatacgatctgtatacaaatggaaaacgatttgtatataaaacgaaaacgatctgtatataaatcgtttttgatctatatacagatcgctttgcaaagagtttgaaagcatggtccgaactgaaaaagttcgcttttcctgcttttttacttcaggatctccttcctttcaggtgcttatttggaatgattccaaactcgtcttcgttgttgaaaactttttcggtctgtattttaggcctttttgcccaaaatcattct .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 agaatgattttgggcaaaaaggcctaaaatacagaccgaaaaagttttcaacaacgaagacgagtttggaatcattccaaataagcacctgaaaggaaggagatcctgaagtaaaaaagcaggaaaagcgaactttttcagttcggaccatgctttcaaactctttgcaaagcgatctgtatatagatcaaaaacgatttatatacagatcgttttcgttttatatacaaatcgttttccatttgtatacagatcgtatctgatttatatatagttcggacggctcaaaaggcccattcccgagcttatataaaagaggcacgcacccgattccaccacgaatcgagtgcgtgccttatctgtttgcaggtcttgcgaaaagttttatcgc Mask Tandem Repeat Region ================================================ gcgataaaacttttcgcaagacctgcaaacagataaggcacgcactcgattcgtggtggaatcgggtgcgtgcctcttttatataagctcgggaatgggccttttgagccgtccgaactannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttttgatctatatacagatcgctttgcaaagagtttgaaagcatggtccgaactgaaaaagttcgcttttcctgcttttttacttcaggatctccttcctttcaggtgcttatttggaatgattccaaactcgtcttcgttgttgaaaactttttcggtctgtattttaggcctttttgcccaaaatcattct Find is-nt database================================================ Query_seq: PG1866:PG1868|PG1866:PG1868:hypothetical protein:hypothetical protein:-><-:1964797..1965187 391 gcgataaaacttttcgcaagacctgcaaacagataaggcacgcactcgattcgtggtggaatcgggtgcgtgcctcttttatataagctcgggaatgggccttttgagccgtccgaactatatataaatcagatacgatctgtatacaaatggaaaacgatttgtatataaaacgaaaacgatctgtatataaatcgtttttgatctatatacagatcgctttgcaaagagtttgaaagcatggtccgaactgaaaaagttcgcttttcctgcttttttacttcaggatctccttcctttcaggtgcttatttggaatgattccaaactcgtcttcgttgttgaaaactttttcggtctgtattttaggcctttttgcccaaaatcattct Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PG1866:PG1868|PG1866:PG1868:hypothetical protein:hypothetical protein:-><-:1964797..1965187 391 gcgataaaacttttcgcaagacctgcaaacagataaggcacgcactcgattcgtggtggaatcgggtgcgtgcctcttttatataagctcgggaatgggccttttgagccgtccgaactatatataaatcagatacgatctgtatacaaatggaaaacgatttgtatataaaacgaaaacgatctgtatataaatcgtttttgatctatatacagatcgctttgcaaagagtttgaaagcatggtccgaactgaaaaagttcgcttttcctgcttttttacttcaggatctccttcctttcaggtgcttatttggaatgattccaaactcgtcttcgttgttgaaaactttttcggtctgtattttaggcctttttgcccaaaatcattct Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PG1866:PG1868|PG1866:PG1868:hypothetical protein:hypothetical protein:-><-:1964797..1965187 391 gcgataaaacttttcgcaagacctgcaaacagataaggcacgcactcgattcgtggtggaatcgggtgcgtgcctcttttatataagctcgggaatgggccttttgagccgtccgaactatatataaatcagatacgatctgtatacaaatggaaaacgatttgtatataaaacgaaaacgatctgtatataaatcgtttttgatctatatacagatcgctttgcaaagagtttgaaagcatggtccgaactgaaaaagttcgcttttcctgcttttttacttcaggatctccttcctttcaggtgcttatttggaatgattccaaactcgtcttcgttgttgaaaactttttcggtctgtattttaggcctttttgcccaaaatcattct Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 gcgataaaacttttcgcaagacctgcaaacagataaggcacgcactcgattcgtggtggaatcgggtgcgtgcctcttttatataagctcgggaatgggccttttgagccgtccgaactatatataaatcagatacgatctgtatacaaatggaaaacgatttgtatataaaacgaaaacgatctgtatataaatcgtttttgatctatatacagatcgctttgcaaagagtttgaaagcatggtccgaactgaaaaagttcgcttttcctgcttttttacttcaggatctccttcctttcaggtgcttatttggaatgattccaaactcgtcttcgttgttgaaaactttttcggtctgtattttaggcctttttgcccaaaatcattct Predict ORF larger than 30AA ================================================ Protein_Len: 34 Strand: + Start: 23 End: 124 ...................... M Q T D K A R T R F V V E S G A C L F Y I S S G M G L L S R P N Y I ........................................................................................................................................................................................................................................................................... Protein_Len: 40 Strand: + Start: 49 End: 168 ................................................ M R G G I G C V P L L Y K L G N G P F E P S E L Y I N Q I R S V Y K W K T I C I ............................................................................................................................................................................................................................... Protein_Len: 38 Strand: + Start: 120 End: 233 ....................................................................................................................... M Y K S D T I C I Q M E N D L Y I K R K R S V Y K S F L I Y I Q I A L Q R V .............................................................................................................................................................. Protein_Len: 60 Strand: + Start: 208 End: 390 ............................................................................................................................................................................................................... M Y R S L C K E F E S M V R T E K V R F S C F F T S G S P S F Q V L I W N D S K L V F V V E N F F G L Y F R P F C P K S . Protein_Len: 60 Strand: + Start: 194 End: 391 ................................................................................................................................................................................................. M V F D L Y T D R F A K S L K A W S E L K K F A F P A F L L Q D L L P F R C L F G M I P N S S S L L K T F S V C I L G L Protein_Len: 37 Strand: - Start: 132 End: 242 ................................................................................................................................... I R D T Y L H F V I Q I Y F S F S R Y I F R K Q D I Y L D S Q L S N S L M ..................................................................................................................................................... Protein_Len: 41 Strand: - Start: 3 End: 125 .. I F S K A L G A F L Y P V C E I R P P I P H T G R K Y L S P F P G K S G D S S Y M .......................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 2 End: 205 . L C I L C A S S E H H F R T R A E K I Y A R S H A K Q A T R V I Y L D S V I Q I C I S F S K Y I F R F R D T Y L D N K M .......................................................................................................................................................................................... gcgataaaacttttcgcaagacctgcaaacagataaggcacgcactcgattcgtggtggaatcgggtgcgtgcctcttttatataagctcgggaatgggccttttgagccgtccgaactatatataaatcagatacgatctgtatacaaatggaaaacgatttgtatataaaacgaaaacgatctgtatataaatcgtttttgatctatatacagatcgctttgcaaagagtttgaaagcatggtccgaactgaaaaagttcgcttttcctgcttttttacttcaggatctccttcctttcaggtgcttatttggaatgattccaaactcgtcttcgttgttgaaaactttttcggtctgtattttaggcctttttgcccaaaatcattct Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ gcgataaaacttttcgcaagacctgcaaacagataaggcacgcactcgattcgtggtggaatcgggtgcgtgcctcttttatataagctcgggaatgggccttttgagccgtccgaactatatataaatcagatacgatctgtatacaaatggaaaacgatttgtatataaaacgaaaacgatctgtatataaatcgtttttgatctatatacagatcgctttgcaaagagtttgaaagcatggtccgaactgaaaaagttcgcttttcctgcttttttacttcaggatctccttcctttcaggtgcttatttggaatgattccaaactcgtcttcgttgttgaaaactttttcggtctgtattttaggcctttttgcccaaaatcattct Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 100 HP_score: -19.6 Tail_Score: -4.54047 Start: 35 End: 76 Full_Region: GACCTGCAAACAGAT AAGGCACGCACTCGATTC GTGGTG GAATCGGGTGCGTGCCTC TTTTATATAAGCTCG ..................................AAGGCACGCACTCGATTCGTGGTGGAATCGGGTGCGTGCCTC........................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 100 HP_score: -20.0 Tail_Score: -3.76232 Start: 37 End: 74 Full_Region: agcttatataaaaga ggcacgcacccgattc caccac gaatcgagtgcgtgcc ttatctgtttgcagg ....................................ggcacgcacccgattccaccacgaatcgagtgcgtgcc............................................................................................................................................................................................................................................................................................................................. TransTerm Strand: + Conf: 100 HP_score: -22.2 Tail_Score: -3.88029 Start: 37 End: 74 Full_Region: CCTGCAAACAGATAA GGCACGCACTCGATTC GTGGTG GAATCGGGTGCGTGCC TCTTTTATATAAGCT ....................................GGCACGCACTCGATTCGTGGTGGAATCGGGTGCGTGCC............................................................................................................................................................................................................................................................................................................................. TransTerm Strand: + Conf: 81 HP_score: -6.6 Tail_Score: -4.86133 Start: 158 End: 197 Full_Region: TATACAAATGGAAAA CGATTTGTATATAAAACG AAAA CGATCTGTATATAAATCG TTTTTGATCTATATA .............................................................................................................................................................CGATTTGTATATAAAACGAAAACGATCTGTATATAAATCG.................................................................................................................................................................................................. TransTerm Strand: - Conf: 60 HP_score: -6.5 Tail_Score: -3.16695 Start: 161 End: 216 Full_Region: ctctttgcaaagcga tctgtatatagatcaaaaacgattt atatac agatcgttttcgttttatatacaaa tcgttttccatttgt ................................................................................................................................................................tctgtatatagatcaaaaacgatttatatacagatcgttttcgttttatatacaaa............................................................................................................................................................................... TransTerm Strand: + Conf: 83 HP_score: -11.1 Tail_Score: -3.54935 Start: 179 End: 220 Full_Region: GTATATAAAACGAAA ACGATCTGTATATAAATCG TTTT TGATCTATATACAGATCGC TTTGCAAAGAGTTTG ..................................................................................................................................................................................ACGATCTGTATATAAATCGTTTTTGATCTATATACAGATCGC........................................................................................................................................................................... TransTerm Strand: - Conf: 100 HP_score: -16.1 Tail_Score: -4.75518 Start: 180 End: 219 Full_Region: aaactctttgcaaag cgatctgtatatagatc aaaaac gatttatatacagatcg ttttcgttttatata ...................................................................................................................................................................................cgatctgtatatagatcaaaaacgatttatatacagatcg............................................................................................................................................................................ TransTerm Strand: + Conf: 95 HP_score: -14.6 Tail_Score: -2.7264 Start: 180 End: 219 Full_Region: TATATAAAACGAAAA CGATCTGTATATAAATCG TTTT TGATCTATATACAGATCG CTTTGCAAAGAGTTT ...................................................................................................................................................................................CGATCTGTATATAAATCGTTTTTGATCTATATACAGATCG............................................................................................................................................................................ TransTerm Strand: + Conf: 62 HP_score: -3.1 Tail_Score: -4.46432 Start: 246 End: 264 Full_Region: GTTTGAAAGCATGGT CCGAACT GAAAA AGTTCGC TTTTCCTGCTTTTTT .....................................................................................................................................................................................................................................................CCGAACTGAAAAAGTTCGC............................................................................................................................... TransTerm Strand: + Conf: 61 HP_score: -6.6 Tail_Score: -3.25419 Start: 247 End: 263 Full_Region: TTTGAAAGCATGGTC CGAACT GAAAA AGTTCG CTTTTCCTGCTTTTT ......................................................................................................................................................................................................................................................CGAACTGAAAAAGTTCG................................................................................................................................ Find igs database================================================ Query_seq: PG1866:PG1868|PG1866:PG1868:hypothetical protein:hypothetical protein:-><-:1964797..1965187 391 gcgataaaacttttcgcaagacctgcaaacagataaggcacgcactcgattcgtggtggaatcgggtgcgtgcctcttttatataagctcgggaatgggccttttgagccgtccgaactatatataaatcagatacgatctgtatacaaatggaaaacgatttgtatataaaacgaaaacgatctgtatataaatcgtttttgatctatatacagatcgctttgcaaagagtttgaaagcatggtccgaactgaaaaagttcgcttttcctgcttttttacttcaggatctccttcctttcaggtgcttatttggaatgattccaaactcgtcttcgttgttgaaaactttttcggtctgtattttaggcctttttgcccaaaatcattct Intra-Species Hit: Count: 7 Min: 1 Max: 391 Len: 391 Subject: NC_002950_PG1866_PG1868|hypothetical protein:hypothetical protein|POSITIVE:NEGATIVE|[1964797,1965187]|391 HSP 1 e-value: 0.0 bit: 775.0 Len: 391 Query Start:1 Query End:391 Subject Strand: POSITIVE Subject Start: 1 Subject End: 391 gcgataaaacttttcgcaagacctgcaaacagataaggcacgcactcgattcgtggtggaatcgggtgcgtgcctcttttatataagctcgggaatgggccttttgagccgtccgaactatatataaatcagatacgatctgtatacaaatggaaaacgatttgtatataaaacgaaaacgatctgtatataaatcgtttttgatctatatacagatcgctttgcaaagagtttgaaagcatggtccgaactgaaaaagttcgcttttcctgcttttttacttcaggatctccttcctttcaggtgcttatttggaatgattccaaactcgtcttcgttgttgaaaactttttcggtctgtattttaggcctttttgcccaaaatcattct gcgataaaacttttcgcaagacctgcaaacagataaggcacgcactcgattcgtggtggaatcgggtgcgtgcctcttttatataagctcgggaatgggccttttgagccgtccgaactatatataaatcagatacgatctgtatacaaatggaaaacgatttgtatataaaacgaaaacgatctgtatataaatcgtttttgatctatatacagatcgctttgcaaagagtttgaaagcatggtccgaactgaaaaagttcgcttttcctgcttttttacttcaggatctccttcctttcaggtgcttatttggaatgattccaaactcgtcttcgttgttgaaaactttttcggtctgtattttaggcctttttgcccaaaatcattct Subject: NC_002950_PG0094_PG0095|outer membrane efflux protein, putative:DNA mismatch repair protein|NEGATIVE:NEGATIVE|[111284,112177]|894 HSP 1 e-value: 4.0E-46 bit: 186.0 Len: 194 Query Start:26 Query End:219 Subject Strand: POSITIVE Subject Start: 543 Subject End: 736 .........................caaacagataaggcacgcactcgattcgtggtggaatcgggtgcgtgcctcttttatataagctcgggaatgggccttttgagccgtccgaactatatataaatcagatacgatctgtatacaaatggaaaacgatttgtatataaaacgaaaacgatctgtatataaatcgtttttgatctatatacagatcg............................................................................................................................................................................ .........................caaatagataaggcacgcactcgattcatctgcgaatcgagtgcgtgcctcctttatgtaagcttgtgaatcggccttttgagccggccgaactatatataaatcagatacgatttatatacaaattgaaaacgatttatatataaaacaaaaatggtctgtatataaatcgaaattcatttatatacagatcg............................................................................................................................................................................ HSP 2 e-value: 2.0E-17 bit: 91.7 Len: 61 Query Start:293 Query End:353 Subject Strand: POSITIVE Subject Start: 765 Subject End: 826 ....................................................................................................................................................................................................................................................................................................cttcctttcagg-tgcttatttggaatgattccaaactcgtcttcgttgttgaaaacttttt...................................... ....................................................................................................................................................................................................................................................................................................cttccttttaggatgcttatttggaatgattccaagctcgtcttcgttgttgaaaacttttt...................................... Subject: NC_002950_PG0022_PG0024|sulfate permease family protein:redox-sensing transcriptional repressor Rex|NEGATIVE:POSITIVE|[26887,27871]|985 HSP 1 e-value: 3.0E-19 bit: 97.6 Len: 77 Query Start:119 Query End:195 Subject Strand: NEGATIVE Subject Start: 394 Subject End: 470 ......................................................................................................................tatatataaatcagatacgatctgtatacaaatggaaaacgatttgtatataaaacgaaaacgatctgtatataaat.................................................................................................................................................................................................... ......................................................................................................................tatatacaaatcgaatacgatctatatacaaatggaaaatgatttatatataaatcgaaaacgatctgtatataaat.................................................................................................................................................................................................... HSP 2 e-value: 2.0E-17 bit: 91.7 Len: 74 Query Start:293 Query End:366 Subject Strand: NEGATIVE Subject Start: 223 Subject End: 296 ....................................................................................................................................................................................................................................................................................................cttcctttcaggtgcttatttggaatgattccaaactcgtcttcgttgttgaaaactttttcggtctgtatttt......................... ....................................................................................................................................................................................................................................................................................................cttcctttcaatcgcttatttagaatgattccaaactcttcttcgttgttgaaaacttttctggtctgtatttt......................... Subject: NC_002950_PG0404_PG0408|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[440197,441041]|845 HSP 1 e-value: 7.0E-17 bit: 89.7 Len: 49 Query Start:305 Query End:353 Subject Strand: POSITIVE Subject Start: 626 Subject End: 674 ................................................................................................................................................................................................................................................................................................................tgcttatttggaatgattccaaactcgtcttcgttgttgaaaacttttt...................................... ................................................................................................................................................................................................................................................................................................................tgcttatttggaatcattccaaactcgtcttcgttgttgaaaacttttt...................................... HSP 2 e-value: 4.0E-6 bit: 54.0 Len: 43 Query Start:153 Query End:195 Subject Strand: POSITIVE Subject Start: 474 Subject End: 516 ........................................................................................................................................................gaaaacgatttgtatataaaacgaaaacgatctgtatataaat.................................................................................................................................................................................................... ........................................................................................................................................................gaaaacgatttatatataaaacgaaaaccatttatatataaat.................................................................................................................................................................................................... Subject: NC_002950_PG1119_PG1121|flavodoxin, putative:asparaginyl-tRNA synthetase|POSITIVE:NEGATIVE|[1195544,1196235]|692 HSP 1 e-value: 3.0E-13 bit: 77.8 Len: 43 Query Start:153 Query End:195 Subject Strand: NEGATIVE Subject Start: 319 Subject End: 361 ........................................................................................................................................................gaaaacgatttgtatataaaacgaaaacgatctgtatataaat.................................................................................................................................................................................................... ........................................................................................................................................................gaaaacgatttgtatataaatcgaaaacgatctgtatataaat.................................................................................................................................................................................................... HSP 2 e-value: 2.0E-11 bit: 71.9 Len: 56 Query Start:298 Query End:353 Subject Strand: NEGATIVE Subject Start: 161 Subject End: 216 .........................................................................................................................................................................................................................................................................................................tttcaggtgcttatttggaatgattccaaactcgtcttcgttgttgaaaacttttt...................................... .........................................................................................................................................................................................................................................................................................................tttcaggcgtttatttagaatgattccaaacttgtcttcgttgttgaaaagttttt...................................... Subject: NC_002950_PG2083_PG2085|hypothetical protein:tryptophanyl-tRNA synthetase|NEGATIVE:POSITIVE|[2184598,2185671]|1074 HSP 1 e-value: 4.0E-12 bit: 73.8 Len: 61 Query Start:293 Query End:353 Subject Strand: POSITIVE Subject Start: 678 Subject End: 738 ....................................................................................................................................................................................................................................................................................................cttcctttcaggtgcttatttggaatgattccaaactcgtcttcgttgttgaaaacttttt...................................... ....................................................................................................................................................................................................................................................................................................cttcctttcggatacttatttggaatgattctaaactcagcttcgttgttgaaaacttttt...................................... HSP 2 e-value: 6.0E-8 bit: 60.0 Len: 54 Query Start:119 Query End:172 Subject Strand: POSITIVE Subject Start: 548 Subject End: 601 ......................................................................................................................tatatataaatcagatacgatctgtatacaaatggaaaacgatttgtatataaa........................................................................................................................................................................................................................... ......................................................................................................................tatatataaattagaaacgatctatatacaaatcgaaaacggtttatatataaa........................................................................................................................................................................................................................... Subject: NC_002950_PG1889_PG1890|hypothetical protein:lipoprotein, putative|POSITIVE:POSITIVE|[1987151,1987704]|554 HSP 1 e-value: 4.0E-12 bit: 73.8 Len: 57 Query Start:297 Query End:353 Subject Strand: POSITIVE Subject Start: 316 Subject End: 372 ........................................................................................................................................................................................................................................................................................................ctttcaggtgcttatttggaatgattccaaactcgtcttcgttgttgaaaacttttt...................................... ........................................................................................................................................................................................................................................................................................................ctttcagctgcttatttagaatgattctaagctcgtcttcattgttgaaaacttttt...................................... HSP 2 e-value: 4.0E-6 bit: 54.0 Len: 43 Query Start:153 Query End:195 Subject Strand: POSITIVE Subject Start: 171 Subject End: 213 ........................................................................................................................................................gaaaacgatttgtatataaaacgaaaacgatctgtatataaat.................................................................................................................................................................................................... ........................................................................................................................................................gaaaacgatttatatataaattgaaaacgatctatatataaat.................................................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ GCGAUAAAACUUUUCGCAAGACCUGCAAACAGAUAAGGCACGCACUCGAUUCGUGGUGGAAUCGGGUGCGUGCCUCUUUUAUAUAAGCUCGGGAAUGGGCCUUUUGAGCCGUCCGAACUAUAUAUAAAUCAGAUACGAUCUGUAUACAAAUGGAAAACGAUUUGUAUAUAAAACGAAAACGAUCUGUAUAUAAAUCGUUUUUGAUCUAUAUACAGAUCGCUUUGCAAAGAGUUUGAAAGCAUGGUCCGAACUGAAAAAGUUCGCUUUUCCUGCUUUUUUACUUCAGGAUCUCCUUCCUUUCAGGUGCUUAUUUGGAAUGAUUCCAAACUCGUCUUCGUUGUUGAAAACUUUUUCGGUCUGUAUUUUAGGCCUUUUUGCCCAAAAUCAUUCU ((((.........))))...(((((((((......(((((((((((((((((......)))))))))))))))))..((((((((((.(((((....((((....).))).))))).)).)))))))).......(((((((((((.(.((.((((((((((((((((((...((....))...)))))))))))))))))).)).).))))))))))).)))))...((((..(((((((.((..((((((.....)))))).....)))))))))..)))).((((......))))...))))........(((((((((........((.((((....)))).))......((((((.....))))))...........))))))))) (-134.70) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AGAAUGAUUUUGGGCAAAAAGGCCUAAAAUACAGACCGAAAAAGUUUUCAACAACGAAGACGAGUUUGGAAUCAUUCCAAAUAAGCACCUGAAAGGAAGGAGAUCCUGAAGUAAAAAAGCAGGAAAAGCGAACUUUUUCAGUUCGGACCAUGCUUUCAAACUCUUUGCAAAGCGAUCUGUAUAUAGAUCAAAAACGAUUUAUAUACAGAUCGUUUUCGUUUUAUAUACAAAUCGUUUUCCAUUUGUAUACAGAUCGUAUCUGAUUUAUAUAUAGUUCGGACGGCUCAAAAGGCCCAUUCCCGAGCUUAUAUAAAAGAGGCACGCACCCGAUUCCACCACGAAUCGAGUGCGUGCCUUAUCUGUUUGCAGGUCUUGCGAAAAGUUUUAUCGC .((((((((((((((......))))))).......(((((...((((((......))))))...))))).))))))).......((....(((((.(.((...(((((...........)))))....((((((.....))))))..)).).))))).((((.(((((((.(((((((((((((((((..((((((((((.((((.(((.((....)).))).)))).))))))))))..)))))))))))))))))(((((.((((((((.(((((((..((((.....)))).....))))))))))))))).(((((((((((.((((((......)))))).))))))))))).........))))).))))))).)))).....)) (-140.90) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 675 350 303 115 68 NC_002950:PG0609|5end_hypothetical_protein_663183..663413_POSITIVE 576 350 303 48 1 NC_002950:PG0995|5end_hypothetical_protein_1055585..1055815_NEGATIVE 538 350 305 78 33 NC_002950:PG1357|5end_hypothetical_protein_1436458..1436688_NEGATIVE 507 350 307 60 17 NC_002950:PG0773|5end_hypothetical_protein_825131..825361_POSITIVE 476 219 178 117 76 NC_002950:PG1222|5end_hypothetical_protein_1299392..1299622_NEGATIVE 455 110 62 69 21 NC_002950:PG1574|5end_hypothetical_protein_1652613..1652843_NEGATIVE 455 110 62 75 27 NC_002950:PG0371|5end_hypothetical_protein_404043..404273_POSITIVE 422 79 33 82 36 NC_002950:PG1223|5end_hypothetical_protein_1299461..1299691_POSITIVE 405 79 37 227 180 NC_002950:PG1351|5end_hypothetical_protein_1432744..1432974_NEGATIVE 387 70 21 80 14 NC_002950:PG1431|5end_DNA-binding_response_regulator,_LuxR_family_1516669..1516899_NEGATIVE 376 110 61 66 8 NC_002950:PG1288|5end_GDP-mannose_4,6-dehydratase_1365963..1366193_POSITIVE 371 70 23 138 86 NC_002950:PG1695|5end_hypothetical_protein_1779440..1779670_POSITIVE 367 79 37 55 8 NC_002950:PG0364|5end_hypothetical_protein_399615..399845_NEGATIVE 359 105 63 210 155 NC_002950:PG0636|5end_MATE_efflux_family_protein_689071..689301_NEGATIVE 359 108 62 117 64 NC_002950:PG0145|5end_hypothetical_protein_167831..168061_POSITIVE 358 76 31 192 144 NC_002950:PG1296|5end_hypothetical_protein_1374794..1375024_POSITIVE 356 108 62 230 173 NC_002950:PG0164|5end_hypothetical_protein_187395..187625_NEGATIVE 354 98 52 226 177 NC_002950:PG1360|5end_phosphoribosylamine--glycine_ligase_1439913..1440143_NEGATIVE 354 109 64 124 84 NC_002950:PG1130|5end_TPR_domain_protein_1208053..1208283_POSITIVE 353 76 44 197 165 NC_002950:PG1676|5end_phosphoenolpyruvate_carboxykinase_1762096..1762326_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 628 75 36 55 16 NC_002950:PG1866|3end_hypothetical_protein_1964736..1964886_POSITIVE 512 197 154 44 1 NC_002950:PG0773|3end_hypothetical_protein_825348..825498_POSITIVE 507 350 307 53 10 NC_002950:PG0772|3end_hypothetical_protein_825204..825354_POSITIVE 491 200 151 65 10 NC_002950:PG1357|3end_hypothetical_protein_1436327..1436477_NEGATIVE 487 337 293 151 103 NC_002950:PG0995|3end_hypothetical_protein_1055469..1055619_NEGATIVE 486 343 307 151 115 NC_002950:PG1167|3end_hypothetical_protein_1248644..1248794_POSITIVE 420 99 53 76 27 NC_002950:PG0932|3end_DNA_polymerase_III,_delta_prime_subunit,_putative_989833..989983_POSITIVE 367 79 37 58 11 NC_002950:PG0365|3end_3'-5'_exonuclease_domain_protein_399612..399762_NEGATIVE 361 78 31 65 15 NC_002950:PG1290|3end_branched-chain_amino_acid_aminotransferase_1369352..1369502_POSITIVE 347 69 21 109 54 NC_002950:PG1559|3end_aminomethyltransferase_1637904..1638054_NEGATIVE 343 79 36 52 4 NC_002950:PG0707|3end_TonB-dependent_receptor,_putative_761086..761236_NEGATIVE 342 100 51 57 8 NC_002950:PG1946|3end_ABC_3_transporter_family_protein_2033019..2033169_POSITIVE 342 372 332 41 1 NC_002950:PG0095|3end_DNA_mismatch_repair_protein_112088..112238_NEGATIVE 338 116 72 135 89 NC_002950:PG0198|3end_hypothetical_protein_237501..237651_POSITIVE 336 77 39 62 27 NC_002950:PG0329|3end_formiminotransferase-cyclodeaminase-related_protein_363527..363677_NEGATIVE 335 69 23 58 2 NC_002950:PG1876|3end_hypothetical_protein_1970633..1970783_NEGATIVE 331 77 36 54 5 NC_002950:PG0733|3end_riboflavin_synthase_subunit_alpha_783856..784006_POSITIVE 330 109 62 138 96 NC_002950:PG0759|3end_TPR_domain_protein_808632..808782_NEGATIVE 329 73 31 65 17 NC_002950:PG0070|3end_UDP-N-acetylglucosamine_acyltransferase_83940..84090_NEGATIVE 328 67 22 99 51 NC_002950:PG0171|3end_5'-nucleotidase_family_protein_193576..193726_POSITIVE