Origin IGS: tgcttgtctattttaataagattagcgaaatagcttgtggtttttcttgttttcctcaaaggtagagattatttgtgagaggggacggttcgcacatgaataattgattcggaggaagggatcttgagggctaaaggtctgaggaaaatcagccctctcgaatatctactcatgattgctgcttcggagaggtctcttagcaaggataaatgcttgaaaggctgatactgacaaatgcgatgatctcactgattaagaacgcgcattgaaggatcggatacacgatatcccgtacccgatcagtttgcgtgccaaaatttttgcgcttgtggtcgctgaaaacatggcgcgaaaactttttgcttttggcgtggaaagtgaaaaattcccgcgccacaacgaaaaaattccggcgctacttttgggaaaaacacagaccgcaattttagcgttttgggttcgtgttttcgaatgagtgagttacgggtattgctccaaaggggtgatggcgaatcattgacacgacgtgtcgtgtccgtcctgtccgagcgtgtgattcatgaaggtctataaagaggtgacactgtaagacggcaatcaggtgtgtgcggcgattttttccgtacacagccgactgcggatagatcccgat .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 atcgggatctatccgcagtcggctgtgtacggaaaaaatcgccgcacacacctgattgccgtcttacagtgtcacctctttatagaccttcatgaatcacacgctcggacaggacggacacgacacgtcgtgtcaatgattcgccatcacccctttggagcaatacccgtaactcactcattcgaaaacacgaacccaaaacgctaaaattgcggtctgtgtttttcccaaaagtagcgccggaattttttcgttgtggcgcgggaatttttcactttccacgccaaaagcaaaaagttttcgcgccatgttttcagcgaccacaagcgcaaaaattttggcacgcaaactgatcgggtacgggatatcgtgtatccgatccttcaatgcgcgttcttaatcagtgagatcatcgcatttgtcagtatcagcctttcaagcatttatccttgctaagagacctctccgaagcagcaatcatgagtagatattcgagagggctgattttcctcagacctttagccctcaagatcccttcctccgaatcaattattcatgtgcgaaccgtcccctctcacaaataatctctacctttgaggaaaacaagaaaaaccacaagctatttcgctaatcttattaaaatagacaagca Mask Tandem Repeat Region ================================================ tgcttgtctattttaataagattagcgaaatagcttgtggtttttcttgttttcctcaaaggtagagattatttgtgagaggggacggttcgcacatgaataattgattcggaggaagggatcttgagggctaaaggtctgaggaaaatcagccctctcgaatatctactcatgattgctgcttcggagaggtctcttagcaaggataaatgcttgaaaggctgatactgacaaatgcgatgatctcactgattaagaacgcgcattgaaggatcggatacacgatatcccgtacccgatcagtttgcgtgccaaaatttttgcgcttgtggtcgctgaaaacatggcgcgaaaactttttgcttttggcgtggaaagtgaaaaattcccgcgccacaacgaaaaaattccggcgctacttttgggaaaaacacagaccgcaattttagcgttttgggttcgtgttttcgaatgagtgagttacgggtattgctccaaaggggtgatggcgaatcattgacacgacgtgtcgtgtccgtcctgtccgagcgtgtgattcatgaaggtctataaagaggtgacactgtaagacggcaatcaggtgtgtgcggcgattttttccgtacacagccgactgcggatagatcccgat Find is-nt database================================================ Query_seq: PG1755:PG1757|PG1755:PG1757:fructose-bisphosphate aldolase:hypothetical protein:<-<-:1843369..1844020 652 tgcttgtctattttaataagattagcgaaatagcttgtggtttttcttgttttcctcaaaggtagagattatttgtgagaggggacggttcgcacatgaataattgattcggaggaagggatcttgagggctaaaggtctgaggaaaatcagccctctcgaatatctactcatgattgctgcttcggagaggtctcttagcaaggataaatgcttgaaaggctgatactgacaaatgcgatgatctcactgattaagaacgcgcattgaaggatcggatacacgatatcccgtacccgatcagtttgcgtgccaaaatttttgcgcttgtggtcgctgaaaacatggcgcgaaaactttttgcttttggcgtggaaagtgaaaaattcccgcgccacaacgaaaaaattccggcgctacttttgggaaaaacacagaccgcaattttagcgttttgggttcgtgttttcgaatgagtgagttacgggtattgctccaaaggggtgatggcgaatcattgacacgacgtgtcgtgtccgtcctgtccgagcgtgtgattcatgaaggtctataaagaggtgacactgtaagacggcaatcaggtgtgtgcggcgattttttccgtacacagccgactgcggatagatcccgat Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PG1755:PG1757|PG1755:PG1757:fructose-bisphosphate aldolase:hypothetical protein:<-<-:1843369..1844020 652 tgcttgtctattttaataagattagcgaaatagcttgtggtttttcttgttttcctcaaaggtagagattatttgtgagaggggacggttcgcacatgaataattgattcggaggaagggatcttgagggctaaaggtctgaggaaaatcagccctctcgaatatctactcatgattgctgcttcggagaggtctcttagcaaggataaatgcttgaaaggctgatactgacaaatgcgatgatctcactgattaagaacgcgcattgaaggatcggatacacgatatcccgtacccgatcagtttgcgtgccaaaatttttgcgcttgtggtcgctgaaaacatggcgcgaaaactttttgcttttggcgtggaaagtgaaaaattcccgcgccacaacgaaaaaattccggcgctacttttgggaaaaacacagaccgcaattttagcgttttgggttcgtgttttcgaatgagtgagttacgggtattgctccaaaggggtgatggcgaatcattgacacgacgtgtcgtgtccgtcctgtccgagcgtgtgattcatgaaggtctataaagaggtgacactgtaagacggcaatcaggtgtgtgcggcgattttttccgtacacagccgactgcggatagatcccgat Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PG1755:PG1757|PG1755:PG1757:fructose-bisphosphate aldolase:hypothetical protein:<-<-:1843369..1844020 652 tgcttgtctattttaataagattagcgaaatagcttgtggtttttcttgttttcctcaaaggtagagattatttgtgagaggggacggttcgcacatgaataattgattcggaggaagggatcttgagggctaaaggtctgaggaaaatcagccctctcgaatatctactcatgattgctgcttcggagaggtctcttagcaaggataaatgcttgaaaggctgatactgacaaatgcgatgatctcactgattaagaacgcgcattgaaggatcggatacacgatatcccgtacccgatcagtttgcgtgccaaaatttttgcgcttgtggtcgctgaaaacatggcgcgaaaactttttgcttttggcgtggaaagtgaaaaattcccgcgccacaacgaaaaaattccggcgctacttttgggaaaaacacagaccgcaattttagcgttttgggttcgtgttttcgaatgagtgagttacgggtattgctccaaaggggtgatggcgaatcattgacacgacgtgtcgtgtccgtcctgtccgagcgtgtgattcatgaaggtctataaagaggtgacactgtaagacggcaatcaggtgtgtgcggcgattttttccgtacacagccgactgcggatagatcccgat Intra-Species Hit: Count: 0 Inter-species Hit: Count: 2 Min: 293 Max: 469 Len: 177 Subject: UniRef90_Q7MU89 Cluster: Hypothetical protein; n=1; Porphyromonas gingivalis|Rep: Hypothetical protein - Porphyromonas gingivalis (Bacteroides gingivalis) HSP 1 e-value: 8.0E-10 bit: 66.2 Len: 174 Query Start:293 Query End:466 Subject Strand: null Subject Start: 12 Subject End: 69 .................................................................................................................................................................................................................................................................................................... N T N P K R * N C G L C F S Q K * R R N F F V V A R E F F T F H A K S K K F S R H V F S D H K R K N F G T Q T D R V .......................................................................................................................................................................................... .................................................................................................................................................................................................................................................................................................... N T N Q K S S D C G S C F L K K W R E I F F V L A C K F F N C R A K T K K F S R H V F V G N K C E N S G T Q T Y R I .......................................................................................................................................................................................... Subject: UniRef90_Q7MUH1 Cluster: Hypothetical protein; n=1; Porphyromonas gingivalis|Rep: Hypothetical protein - Porphyromonas gingivalis (Bacteroides gingivalis) HSP 1 e-value: 2.0E-6 bit: 54.7 Len: 171 Query Start:299 Query End:469 Subject Strand: null Subject Start: 7 Subject End: 63 .......................................................................................................................................................................................................................................................................................................... I S L R A K I F A L V V A E N M A R K L F A F G V E S E K F P R H N E K I P A L L L G K T Q T A I L A F W V R V F ....................................................................................................................................................................................... .......................................................................................................................................................................................................................................................................................................... I G L G S K I F P F A T P Q N A V R K L F Y F G V G S K K F S R H N E K I L A P L F Q G I R A T I G A F P V R V F ....................................................................................................................................................................................... tgcttgtctattttaataagattagcgaaatagcttgtggtttttcttgttttcctcaaaggtagagattatttgtgagaggggacggttcgcacatgaataattgattcggaggaagggatcttgagggctaaaggtctgaggaaaatcagccctctcgaatatctactcatgattgctgcttcggagaggtctcttagcaaggataaatgcttgaaaggctgatactgacaaatgcgatgatctcactgattaagaacgcgcattgaaggatcggatacacgatatcccgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaatgagtgagttacgggtattgctccaaaggggtgatggcgaatcattgacacgacgtgtcgtgtccgtcctgtccgagcgtgtgattcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnat Predict ORF larger than 30AA ================================================ Protein_Len: 41 Strand: + Start: 100 End: 222 ................................................................................................... M I D S E E G I L R A K G L R K I S P L E Y L L M I A A S E R S L S K D K C L K G .............................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 58 Strand: + Start: 273 End: 446 ................................................................................................................................................................................................................................................................................ M G Y T I S R T R S V C V P K F L R L W S L K T W R E N F L L L A W K V K N S R A T T K K F R R Y F W E K H R P Q F .............................................................................................................................................................................................................. Protein_Len: 60 Strand: + Start: 266 End: 472 ......................................................................................................................................................................................................................................................................... M K D R I H D I P Y P I S L R A K I F A L V V A E N M A R K L F A F G V E S E K F P R H N E K I P A L L L G K T Q T A I .................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 385 End: 570 ................................................................................................................................................................................................................................................................................................................................................................................................ M P A P Q R K N S G A T F G K N T D R N F S V L G S C F R M S E L R V L L Q R G D G E S L T R R V V S V L S E R V I H E .................................................................................. Protein_Len: 60 Strand: - Start: 449 End: 652 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................ S H T V P I A G F P H H R I M S V V H R T R G T R A H S E H L D I F L H C Q L V A I L H T R R N K G Y V A S Q P Y I G M Protein_Len: 60 Strand: - Start: 303 End: 557 .............................................................................................................................................................................................................................................................................................................. H F I G A G C R F F E P A V K P F F V S R L K L T K P E H K R I L S N R T N S W L P S P S D N V R R T T D T R D S R T M ............................................................................................... Protein_Len: 60 Strand: - Start: 256 End: 444 ............................................................................................................................................................................................................................................................... N F S R I C S I G Y G I L K R A L I K A S T T A S F M A R F S K A K P T S L S F N G R W L S F I G A S S K P F V C V A M ................................................................................................................................................................................................................ Protein_Len: 60 Strand: - Start: 200 End: 397 ....................................................................................................................................................................................................... L S I S V F A I I E S I L F A C Q L I P Y V I D R V R D T Q T G F N K R K H D S F V H R S F K K S K A H F T F F E R A M ............................................................................................................................................................................................................................................................... Protein_Len: 55 Strand: - Start: 72 End: 236 ....................................................................... K H S P V T R V H I I S E S S P I K L A L P R L F I L G R S Y R S M I A A E S L D R L L S L H K F P Q Y Q C M ................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 47 Strand: - Start: 25 End: 165 ........................ R F L K H N K K N E E F T S I I Q S L P R N A C S Y N I R L F P D Q P S F T Q P F D A R E F M ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... tgcttgtctattttaataagattagcgaaatagcttgtggtttttcttgttttcctcaaaggtagagattatttgtgagaggggacggttcgcacatgaataattgattcggaggaagggatcttgagggctaaaggtctgaggaaaatcagccctctcgaatatctactcatgattgctgcttcggagaggtctcttagcaaggataaatgcttgaaaggctgatactgacaaatgcgatgatctcactgattaagaacgcgcattgaaggatcggatacacgatatcccgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaatgagtgagttacgggtattgctccaaaggggtgatggcgaatcattgacacgacgtgtcgtgtccgtcctgtccgagcgtgtgattcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnat Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ PromScan Matrix: RpoN Strand: - Score: 81 Start: 299 End: 315 ..........................................................................................................................................................................................................................................................................................................TTGGCACGCAAACTGAT................................................................................................................................................................................................................................................................................................................................................. tgcttgtctattttaataagattagcgaaatagcttgtggtttttcttgttttcctcaaaggtagagattatttgtgagaggggacggttcgcacatgaataattgattcggaggaagggatcttgagggctaaaggtctgaggaaaatcagccctctcgaatatctactcatgattgctgcttcggagaggtctcttagcaaggataaatgcttgaaaggctgatactgacaaatgcgatgatctcactgattaagaacgcgcattgaaggatcggatacacgatatcccgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaatgagtgagttacgggtattgctccaaaggggtgatggcgaatcattgacacgacgtgtcgtgtccgtcctgtccgagcgtgtgattcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnat Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 65 HP_score: -5.6 Tail_Score: -4.07568 Start: 343 End: 398 Full_Region: ccggaattttttcgt tgtggcgcgggaatttttcacttt ccacgcca aaagcaaaaagttttcgcgccatg ttttcagcgaccaca ......................................................................................................................................................................................................................................................................................................................................................tgtggcgcgggaatttttcactttccacgccaaaagcaaaaagttttcgcgccatg.............................................................................................................................................................................................................................................................. TransTerm Strand: - Conf: 69 HP_score: -8.2 Tail_Score: -3.63744 Start: 345 End: 396 Full_Region: ggaattttttcgttg tggcgcgggaatttttcacttt ccacgcca aaagcaaaaagttttcgcgcca tgttttcagcgacca ........................................................................................................................................................................................................................................................................................................................................................tggcgcgggaatttttcactttccacgccaaaagcaaaaagttttcgcgcca................................................................................................................................................................................................................................................................ TransTerm Strand: - Conf: 60 HP_score: -7.4 Tail_Score: -3.07962 Start: 592 End: 640 Full_Region: atcgggatctat ccgcagtcggctgtgtacgg aaaaaatcg ccgcacacacctgattgccg tcttacagtgtcacc ...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ccgcagtcggctgtgtacggaaaaaatcgccgcacacacctgattgccg............ Find igs database================================================ Query_seq: PG1755:PG1757|PG1755:PG1757:fructose-bisphosphate aldolase:hypothetical protein:<-<-:1843369..1844020 652 tgcttgtctattttaataagattagcgaaatagcttgtggtttttcttgttttcctcaaaggtagagattatttgtgagaggggacggttcgcacatgaataattgattcggaggaagggatcttgagggctaaaggtctgaggaaaatcagccctctcgaatatctactcatgattgctgcttcggagaggtctcttagcaaggataaatgcttgaaaggctgatactgacaaatgcgatgatctcactgattaagaacgcgcattgaaggatcggatacacgatatcccgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaatgagtgagttacgggtattgctccaaaggggtgatggcgaatcattgacacgacgtgtcgtgtccgtcctgtccgagcgtgtgattcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnat Intra-Species Hit: Count: 1 Min: 1 Max: 560 Len: 560 Subject: NC_002950_PG1755_PG1757|fructose-bisphosphate aldolase:hypothetical protein|NEGATIVE:NEGATIVE|[1843369,1844020]|652 HSP 1 e-value: 1.0E-163 bit: 577.0 Len: 291 Query Start:1 Query End:291 Subject Strand: POSITIVE Subject Start: 1 Subject End: 291 tgcttgtctattttaataagattagcgaaatagcttgtggtttttcttgttttcctcaaaggtagagattatttgtgagaggggacggttcgcacatgaataattgattcggaggaagggatcttgagggctaaaggtctgaggaaaatcagccctctcgaatatctactcatgattgctgcttcggagaggtctcttagcaaggataaatgcttgaaaggctgatactgacaaatgcgatgatctcactgattaagaacgcgcattgaaggatcggatacacgatatccc......................................................................................................................................................................................................................................................................................................................................................................... tgcttgtctattttaataagattagcgaaatagcttgtggtttttcttgttttcctcaaaggtagagattatttgtgagaggggacggttcgcacatgaataattgattcggaggaagggatcttgagggctaaaggtctgaggaaaatcagccctctcgaatatctactcatgattgctgcttcggagaggtctcttagcaaggataaatgcttgaaaggctgatactgacaaatgcgatgatctcactgattaagaacgcgcattgaaggatcggatacacgatatccc......................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 2.0E-43 bit: 178.0 Len: 90 Query Start:471 Query End:560 Subject Strand: POSITIVE Subject Start: 471 Subject End: 560 ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................aatgagtgagttacgggtattgctccaaaggggtgatggcgaatcattgacacgacgtgtcgtgtccgtcctgtccgagcgtgtgattca............................................................................................ ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................aatgagtgagttacgggtattgctccaaaggggtgatggcgaatcattgacacgacgtgtcgtgtccgtcctgtccgagcgtgtgattca............................................................................................ Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UGCUUGUCUAUUUUAAUAAGAUUAGCGAAAUAGCUUGUGGUUUUUCUUGUUUUCCUCAAAGGUAGAGAUUAUUUGUGAGAGGGGACGGUUCGCACAUGAAUAAUUGAUUCGGAGGAAGGGAUCUUGAGGGCUAAAGGUCUGAGGAAAAUCAGCCCUCUCGAAUAUCUACUCAUGAUUGCUGCUUCGGAGAGGUCUCUUAGCAAGGAUAAAUGCUUGAAAGGCUGAUACUGACAAAUGCGAUGAUCUCACUGAUUAAGAACGCGCAUUGAAGGAUCGGAUACACGAUAUCCCGUACCCGAUCAGUUUGCGUGCCAAAAUUUUUGCGCUUGUGGUCGCUGAAAACAUGGCGCGAAAACUUUUUGCUUUUGGCGUGGAAAGUGAAAAAUUCCCGCGCCACAACGAAAAAAUUCCGGCGCUACUUUUGGGAAAAACACAGACCGCAAUUUUAGCGUUUUGGGUUCGUGUUUUCGAAUGAGUGAGUUACGGGUAUUGCUCCAAAGGGGUGAUGGCGAAUCAUUGACACGACGUGUCGUGUCCGUCCUGUCCGAGCGUGUGAUUCA .(((.((((.........)))).)))..........((((...(((...((((((((...((....(((((((((((((.(....)..))))))....)))))))...)).))))))))......(((((((.....((....)).....)))))))..)))...))))....(((..(((((.((((.(((.(.........(((..((((((((...((((.((.((....((((((.(((((.....)))))......))))))..))..(((((.((((((...((((..(((((..(((....(((((....(((((((((((((..((...))..))).)))))))))).((((((.((.((((((((.((.(....).)).)))))))).))))))))......))))).))).)))))............(((.......)))...)))).)))))).)))))....)).)))).))))))))..))).....((((((.....))))))(((((((....))))))).).))).)))))))).)..))).. (-173.00) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UGAAUCACACGCUCGGACAGGACGGACACGACACGUCGUGUCAAUGAUUCGCCAUCACCCCUUUGGAGCAAUACCCGUAACUCACUCAUUCGAAAACACGAACCCAAAACGCUAAAAUUGCGGUCUGUGUUUUUCCCAAAAGUAGCGCCGGAAUUUUUUCGUUGUGGCGCGGGAAUUUUUCACUUUCCACGCCAAAAGCAAAAAGUUUUCGCGCCAUGUUUUCAGCGACCACAAGCGCAAAAAUUUUGGCACGCAAACUGAUCGGGUACGGGAUAUCGUGUAUCCGAUCCUUCAAUGCGCGUUCUUAAUCAGUGAGAUCAUCGCAUUUGUCAGUAUCAGCCUUUCAAGCAUUUAUCCUUGCUAAGAGACCUCUCCGAAGCAGCAAUCAUGAGUAGAUAUUCGAGAGGGCUGAUUUUCCUCAGACCUUUAGCCCUCAAGAUCCCUUCCUCCGAAUCAAUUAUUCAUGUGCGAACCGUCCCCUCUCACAAAUAAUCUCUACCUUUGAGGAAAACAAGAAAAACCACAAGCUAUUUCGCUAAUCUUAUUAAAAUAGACAAGCA ..........(((.((...((((((((((((....))))))).....(((((........((((((((............((((((.....(((((((((.((((((..........))).))).))))))))).....(((.(((((((((((((((.((((((((((((..(((((((..((((........))))..)))))))..))))))))((.....)).......)))).)))))))))))).((((....(((((((((((.(....).)))))))))))......)))).))))))....))))))........................((((..((((........)))).))))....)))))))).......(((((((((..(((((.(((((((((...((....))...)))))))))..((.....))...)))))...))))))))).))))).)))))((((.....................)))).............))...)))......(((..(((.........)))..))). (-157.40) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 1002 130 81 221 172 NC_002950:PG1755|5end_fructose-bisphosphate_aldolase_1843278..1843508_NEGATIVE 558 420 373 172 126 NC_002950:PG0132|5end_hypothetical_protein_152879..153109_POSITIVE 524 440 391 132 83 NC_002950:PG1617|5end_hypothetical_protein_1697755..1697985_NEGATIVE 463 427 386 87 44 NC_002950:PG2064|5end_hypothetical_protein_2160550..2160780_POSITIVE 445 420 373 185 139 NC_002950:PG2063|5end_hypothetical_protein_2160596..2160826_NEGATIVE 425 425 386 87 46 NC_002950:PG0313|5end_hypothetical_protein_347366..347596_POSITIVE 417 375 333 163 121 NC_002950:PG0081|5end_hypothetical_protein_93805..94035_POSITIVE 413 144 107 181 138 NC_002950:PG1576|5end_L-aspartate_oxidase_1653016..1653246_POSITIVE 402 550 501 149 94 NC_002950:PG1966|5end_hypothetical_protein_2056924..2057154_NEGATIVE 395 550 517 173 129 NC_002950:PG1565|5end_3-deoxy-D-manno-octulosonic-acid_transferase,_putative_1645859..1646089_NEGATIVE 390 537 492 221 162 NC_002950:PG0159|5end_endopeptidase_PepO_183164..183394_NEGATIVE 384 160 111 141 92 NC_002950:PG2076|5end_hypothetical_protein_2176445..2176675_POSITIVE 384 160 111 141 92 NC_002950:PG1267|5end_hypothetical_protein_1346966..1347196_POSITIVE 378 376 338 49 11 NC_002950:PG1799|5end_hypothetical_protein_1894499..1894729_POSITIVE 375 160 111 141 92 NC_002950:PG1672|5end_hypothetical_protein_1757637..1757867_POSITIVE 375 160 111 141 92 NC_002950:PG0100|5end_hypothetical_protein_119219..119449_NEGATIVE 360 182 149 226 189 NC_002950:PG0880|5end_bacterioferritin_comigratory_protein_942539..942769_POSITIVE 359 540 492 223 178 NC_002950:PG2223|5end_glycosyl_transferase,_group_2_family_protein_2337713..2337943_POSITIVE 358 550 502 99 35 NC_002950:PG2202|5end_Holliday_junction_resolvase-like_protein_2309933..2310163_NEGATIVE 356 426 386 124 80 NC_002950:PG1980|5end_hypothetical_protein_2067930..2068160_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 1083 550 501 83 34 NC_002950:PG0031|3end_hypothetical_protein_36905..37055_NEGATIVE 562 420 372 52 4 NC_002950:PG0542|3end_hypothetical_protein_595377..595527_NEGATIVE 478 350 303 151 104 NC_002950:PG1655|3end_hypothetical_protein_1737384..1737534_POSITIVE 413 470 421 63 16 NC_002950:PG1024|3end_hypothetical_protein_1086876..1087026_POSITIVE 395 550 517 148 104 NC_002950:PG1566|3end_glutamyl-tRNA_synthetase_1645884..1646034_NEGATIVE 392 369 322 58 5 NC_002950:PG0020|3end_transcriptional_regulator,_MarR_family_24166..24316_POSITIVE 386 160 111 73 21 NC_002950:PG1012|3end_tRNA-i(6)A37_modification_enzyme_MiaB_1070089..1070239_NEGATIVE 361 168 124 69 22 NC_002950:PG0435|3end_capsular_polysaccharide_biosythesis_protein,_putative_472708..472858_NEGATIVE 358 471 431 42 2 NC_002950:PG2227|3end_hypothetical_protein_2342744..2342894_POSITIVE 354 336 291 90 21 NC_002950:PG1866|3end_hypothetical_protein_1964736..1964886_POSITIVE 352 540 500 64 24 NC_002950:PG0724|3end_prolyl_oligopeptidase_family_protein_777255..777405_POSITIVE 351 520 487 149 111 NC_002950:PG2133|3end_lipoprotein,_putative_2239993..2240143_POSITIVE 347 194 152 78 25 NC_002950:PG2004|3end_hypothetical_protein_2093135..2093285_NEGATIVE 345 380 331 84 29 NC_002950:PG0933|3end_translation_elongation_factor_G,_putative_992236..992386_POSITIVE 340 539 495 151 108 NC_002950:PG0701|3end_cobinamide_kinase/cobinamide_phosphate_guanylyltransferase_757127..757277_POSITIVE 339 370 321 79 39 NC_002950:PG1875|3end_hemolysin_1969647..1969797_NEGATIVE 337 366 321 87 42 NC_002950:PG1162|3end_ATP:cob(I)alamin_adenosyltransferase,_putative_1241473..1241623_NEGATIVE 336 277 232 62 16 NC_002950:PG2094|3end_hypothetical_protein_2193321..2193471_NEGATIVE 335 350 305 115 73 NC_002950:PG2206|3end_ABC_transporter,_ATP-binding_protein_2317250..2317400_NEGATIVE 334 160 111 66 4 NC_002950:PG2106|3end_hypothetical_protein_2215457..2215607_POSITIVE