Origin IGS: gcccaaagataaagcatttatcctgctccggagtttcgtctaaatcgttacggtcctccgtaaatctcaagagtgcatcgcttcatacgggtgtaaaaacatgcgaggcgtatctttcctttgaacaacttattgccctctcttcatatcataagacccctctaaaatacgtgccaaaaaaattttcaacaacgaagaagaatttagaatcattccaaataagcgtccgaaaggaaacggattttgaaatcgggaagatgaaaaattagacttcgtgaagcgaaaatccactattcaaaagatcgaatcacgattgatatataaaacgttttcgatttatatataaactgatttcaataaatatataaatcgaaaacgttttgtatataaatcgcagccctcaaaaagccttttcgtaaggtgataaaacagcgacacccgcccgattccttcttgaatcgggcgggtgtcgtatatgt .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 acatatacgacacccgcccgattcaagaaggaatcgggcgggtgtcgctgttttatcaccttacgaaaaggctttttgagggctgcgatttatatacaaaacgttttcgatttatatatttattgaaatcagtttatatataaatcgaaaacgttttatatatcaatcgtgattcgatcttttgaatagtggattttcgcttcacgaagtctaatttttcatcttcccgatttcaaaatccgtttcctttcggacgcttatttggaatgattctaaattcttcttcgttgttgaaaatttttttggcacgtattttagaggggtcttatgatatgaagagagggcaataagttgttcaaaggaaagatacgcctcgcatgtttttacacccgtatgaagcgatgcactcttgagatttacggaggaccgtaacgatttagacgaaactccggagcaggataaatgctttatctttgggc Mask Tandem Repeat Region ================================================ gcccaaagataaagcatttatcctgctccggagtttcgtctaaatcgttacggtcctccgtaaatctcaagagtgcatcgcttcatacgggtgtaaaaacatgcgaggcgtatctttcctttgaacaacttattgccctctcttcatatcataagacccctctaaaatacgtgccaaaaaaattttcaacaacgaagaagaatttagaatcattccaaataagcgtccgaaaggaaacggattttgaaatcgggaagatgaaaaattagacttcgtgaagcgaaaatccactattcaaaagatcgaatcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgaaaacgttttgtatataaatcgcagccctcaaaaagccttttcgtaaggtgataaaacagcgacacccgcccgattccttcttgaatcgggcgggtgtcgtatatgt Find is-nt database================================================ Query_seq: PG1694:PG1695|PG1694:PG1695:hypothetical protein:hypothetical protein:<-->:1779101..1779579 479 gcccaaagataaagcatttatcctgctccggagtttcgtctaaatcgttacggtcctccgtaaatctcaagagtgcatcgcttcatacgggtgtaaaaacatgcgaggcgtatctttcctttgaacaacttattgccctctcttcatatcataagacccctctaaaatacgtgccaaaaaaattttcaacaacgaagaagaatttagaatcattccaaataagcgtccgaaaggaaacggattttgaaatcgggaagatgaaaaattagacttcgtgaagcgaaaatccactattcaaaagatcgaatcacgattgatatataaaacgttttcgatttatatataaactgatttcaataaatatataaatcgaaaacgttttgtatataaatcgcagccctcaaaaagccttttcgtaaggtgataaaacagcgacacccgcccgattccttcttgaatcgggcgggtgtcgtatatgt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PG1694:PG1695|PG1694:PG1695:hypothetical protein:hypothetical protein:<-->:1779101..1779579 479 gcccaaagataaagcatttatcctgctccggagtttcgtctaaatcgttacggtcctccgtaaatctcaagagtgcatcgcttcatacgggtgtaaaaacatgcgaggcgtatctttcctttgaacaacttattgccctctcttcatatcataagacccctctaaaatacgtgccaaaaaaattttcaacaacgaagaagaatttagaatcattccaaataagcgtccgaaaggaaacggattttgaaatcgggaagatgaaaaattagacttcgtgaagcgaaaatccactattcaaaagatcgaatcacgattgatatataaaacgttttcgatttatatataaactgatttcaataaatatataaatcgaaaacgttttgtatataaatcgcagccctcaaaaagccttttcgtaaggtgataaaacagcgacacccgcccgattccttcttgaatcgggcgggtgtcgtatatgt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PG1694:PG1695|PG1694:PG1695:hypothetical protein:hypothetical protein:<-->:1779101..1779579 479 gcccaaagataaagcatttatcctgctccggagtttcgtctaaatcgttacggtcctccgtaaatctcaagagtgcatcgcttcatacgggtgtaaaaacatgcgaggcgtatctttcctttgaacaacttattgccctctcttcatatcataagacccctctaaaatacgtgccaaaaaaattttcaacaacgaagaagaatttagaatcattccaaataagcgtccgaaaggaaacggattttgaaatcgggaagatgaaaaattagacttcgtgaagcgaaaatccactattcaaaagatcgaatcacgattgatatataaaacgttttcgatttatatataaactgatttcaataaatatataaatcgaaaacgttttgtatataaatcgcagccctcaaaaagccttttcgtaaggtgataaaacagcgacacccgcccgattccttcttgaatcgggcgggtgtcgtatatgt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 gcccaaagataaagcatttatcctgctccggagtttcgtctaaatcgttacggtcctccgtaaatctcaagagtgcatcgcttcatacgggtgtaaaaacatgcgaggcgtatctttcctttgaacaacttattgccctctcttcatatcataagacccctctaaaatacgtgccaaaaaaattttcaacaacgaagaagaatttagaatcattccaaataagcgtccgaaaggaaacggattttgaaatcgggaagatgaaaaattagacttcgtgaagcgaaaatccactattcaaaagatcgaatcacgattgatatataaaacgttttcgatttatatataaactgatttcaataaatatataaatcgaaaacgttttgtatataaatcgcagccctcaaaaagccttttcgtaaggtgataaaacagcgacacccgcccgattccttcttgaatcgggcgggtgtcgtatatgt Predict ORF larger than 30AA ================================================ Protein_Len: 60 Strand: + Start: 9 End: 266 ........ M K H L S C S G V S S K S L R S S V N L K S A S L H T G V K T C E A Y L S F E Q L I A L S S Y H K T P L K Y V P K K F S ..................................................................................................................................................................................................................... Protein_Len: 46 Strand: - Start: 340 End: 477 ................................................................................................................................................................................................................................................................................................................................................... I Y V S K L L Y I F R F R K T Y L D C G E F L R K T L H Y F L S V R G I G E Q I P R T D Y M .. Protein_Len: 36 Strand: - Start: 152 End: 259 ....................................................................................................................................................... L V G R F Y T G F F N E V V F F F K S D N W I L T R F S V S K S I P F M ............................................................................................................................................................................................................................ Protein_Len: 54 Strand: - Start: 133 End: 294 .................................................................................................................................... Q G R K M D Y S G E L I R A L F I K L L S S S N L I M G F L R G F P F P N Q F R S S S F N S K T F R F D V M ......................................................................................................................................................................................... gcccaaagataaagcatttatcctgctccggagtttcgtctaaatcgttacggtcctccgtaaatctcaagagtgcatcgcttcatacgggtgtaaaaacatgcgaggcgtatctttcctttgaacaacttattgccctctcttcatatcataagacccctctaaaatacgtgccaaaaaaattttcaacaacgaagaagaatttagaatcattccaaataagcgtccgaaaggaaacggattttgaaatcgggaagatgaaaaattagacttcgtgaagcgaaaatccactattcaaaagatcgaatcacgattgatatataaaacgttttcgatttatatataaactgatttcaataaatatataaatcgaaaacgttttgtatataaatcgcagccctcaaaaagccttttcgtaaggtgataaaacagcgacacccgcccgattccttcttgaatcgggcgggtgtcgtatatgt Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ gcccaaagataaagcatttatcctgctccggagtttcgtctaaatcgttacggtcctccgtaaatctcaagagtgcatcgcttcatacgggtgtaaaaacatgcgaggcgtatctttcctttgaacaacttattgccctctcttcatatcataagacccctctaaaatacgtgccaaaaaaattttcaacaacgaagaagaatttagaatcattccaaataagcgtccgaaaggaaacggattttgaaatcgggaagatgaaaaattagacttcgtgaagcgaaaatccactattcaaaagatcgaatcacgattgatatataaaacgttttcgatttatatataaactgatttcaataaatatataaatcgaaaacgttttgtatataaatcgcagccctcaaaaagccttttcgtaaggtgataaaacagcgacacccgcccgattccttcttgaatcgggcgggtgtcgtatatgt Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 100 HP_score: -13.4 Tail_Score: -4.61868 Start: 327 End: 378 Full_Region: GATTGATATATAAAA CGTTTTCGATTTATATATAAACTG ATTT CAATAAATATATAAATCGAAAACG TTTTGTATATAAATC ......................................................................................................................................................................................................................................................................................................................................CGTTTTCGATTTATATATAAACTGATTTCAATAAATATATAAATCGAAAACG..................................................................................................... TransTerm Strand: - Conf: 100 HP_score: -15.6 Tail_Score: -4.61868 Start: 327 End: 378 Full_Region: gatttatatacaaaa cgttttcgatttatatatttattg aaat cagtttatatataaatcgaaaacg ttttatatatcaatc ......................................................................................................................................................................................................................................................................................................................................cgttttcgatttatatatttattgaaatcagtttatatataaatcgaaaacg..................................................................................................... Find igs database================================================ Query_seq: PG1694:PG1695|PG1694:PG1695:hypothetical protein:hypothetical protein:<-->:1779101..1779579 479 gcccaaagataaagcatttatcctgctccggagtttcgtctaaatcgttacggtcctccgtaaatctcaagagtgcatcgcttcatacgggtgtaaaaacatgcgaggcgtatctttcctttgaacaacttattgccctctcttcatatcataagacccctctaaaatacgtgccaaaaaaattttcaacaacgaagaagaatttagaatcattccaaataagcgtccgaaaggaaacggattttgaaatcgggaagatgaaaaattagacttcgtgaagcgaaaatccactattcaaaagatcgaatcacgattgatatataaaacgttttcgatttatatataaactgatttcaataaatatataaatcgaaaacgttttgtatataaatcgcagccctcaaaaagccttttcgtaaggtgataaaacagcgacacccgcccgattccttcttgaatcgggcgggtgtcgtatatgt Intra-Species Hit: Count: 6 Min: 1 Max: 479 Len: 479 Subject: NC_002950_PG1694_PG1695|hypothetical protein:hypothetical protein|NEGATIVE:POSITIVE|[1779101,1779579]|479 HSP 1 e-value: 0.0 bit: 908.0 Len: 479 Query Start:1 Query End:479 Subject Strand: POSITIVE Subject Start: 1 Subject End: 479 gcccaaagataaagcatttatcctgctccggagtttcgtctaaatcgttacggtcctccgtaaatctcaagagtgcatcgcttcatacgggtgtaaaaacatgcgaggcgtatctttcctttgaacaacttattgccctctcttcatatcataagacccctctaaaatacgtgccnnnnnnnttttcaacaacgaagaagaatttagaatcattccaaataagcgtccgaaaggaaacggattttgaaatcgggaagatgaaaaattagacttcgtgaagcgaaaatccactattcaaaagatcgaatcacgattgatatataaaacgttttcgatttatatataaactgatttcaataaatatataaatcgaaaacgttttgtatataaatcgcagccctcaaaaagccttttcgtaaggtgataaaacagcgacacccgcccgattccttcttgaatcgggcgggtgtcgtatatgt gcccaaagataaagcatttatcctgctccggagtttcgtctaaatcgttacggtcctccgtaaatctcaagagtgcatcgcttcatacgggtgtaaaaacatgcgaggcgtatctttcctttgaacaacttattgccctctcttcatatcataagacccctctaaaatacgtgccaaaaaaattttcaacaacgaagaagaatttagaatcattccaaataagcgtccgaaaggaaacggattttgaaatcgggaagatgaaaaattagacttcgtgaagcgaaaatccactattcaaaagatcgaatcacgattgatatataaaacgttttcgatttatatataaactgatttcaataaatatataaatcgaaaacgttttgtatataaatcgcagccctcaaaaagccttttcgtaaggtgataaaacagcgacacccgcccgattccttcttgaatcgggcgggtgtcgtatatgt Subject: NC_002950_PG1606_PG1608|ion transporter:methylmalonyl-CoA decarboxylase, beta subunit|NEGATIVE:NEGATIVE|[1687716,1688774]|1059 HSP 1 e-value: 2.0E-20 bit: 101.0 Len: 131 Query Start:302 Query End:432 Subject Strand: NEGATIVE Subject Start: 552 Subject End: 682 .............................................................................................................................................................................................................................................................................................................atcgaatcacgattgatatataaaacgttttcgatttatatataaactgatttcaataaatatataaatcgaaaacgttttgtatataaatcgcagccctcaaaaagccttttcgtaaggtgataaaacag............................................... .............................................................................................................................................................................................................................................................................................................atcgaataacgatctatatataaaccattttccatttatatataaatcgttttcaatatatatagaaatcgaaaatgatttgtatatcaatcgcagcccccaaaatgccatattgtaagctgataaaacag............................................... HSP 2 e-value: 8.0E-8 bit: 60.0 Len: 42 Query Start:183 Query End:224 Subject Strand: NEGATIVE Subject Start: 760 Subject End: 801 ......................................................................................................................................................................................ttttcaacaacgaagaagaatttagaatcattccaaataagc............................................................................................................................................................................................................................................................... ......................................................................................................................................................................................ttttcaacagcgaagaggagtttagaatcattccaaataagc............................................................................................................................................................................................................................................................... Subject: NC_002950_PG1889_PG1890|hypothetical protein:lipoprotein, putative|POSITIVE:POSITIVE|[1987151,1987704]|554 HSP 1 e-value: 1.0E-18 bit: 95.6 Len: 100 Query Start:317 Query End:416 Subject Strand: NEGATIVE Subject Start: 110 Subject End: 209 ............................................................................................................................................................................................................................................................................................................................atatataaaacgttttcgatttatatataaactgatttcaataaatatataaatcgaaaacgttttgtatataaatcgcagccctcaaaaagccttttcg............................................................... ............................................................................................................................................................................................................................................................................................................................atatatagatcgttttcaatttatatataaatcgttttcaataaatatatatatcgtaaacgatttgtatataaaacgcaggccccaaaaggccttttcg............................................................... Subject: NC_002950_PG1375_PG1378|hypothetical protein:A/G-specific adenine glycosylase|POSITIVE:NEGATIVE|[1456804,1457804]|1001 HSP 1 e-value: 3.0E-10 bit: 67.9 Len: 54 Query Start:318 Query End:371 Subject Strand: POSITIVE Subject Start: 484 Subject End: 537 .............................................................................................................................................................................................................................................................................................................................tatataaaacgttttcgatttatatataaactgatttcaataaatatataaatc............................................................................................................ .............................................................................................................................................................................................................................................................................................................................tatatagatcgtttttgatctatatataaactgatttcaataaatatacaaatc............................................................................................................ HSP 2 e-value: 8.0E-8 bit: 60.0 Len: 42 Query Start:183 Query End:224 Subject Strand: POSITIVE Subject Start: 328 Subject End: 369 ......................................................................................................................................................................................ttttcaacaacgaagaagaatttagaatcattccaaataagc............................................................................................................................................................................................................................................................... ......................................................................................................................................................................................ttttcaacaatgaagatgagtttagaatcattccaaataagc............................................................................................................................................................................................................................................................... Subject: NC_002950_PG0404_PG0408|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[440197,441041]|845 HSP 1 e-value: 1.0E-9 bit: 65.9 Len: 81 Query Start:317 Query End:397 Subject Strand: NEGATIVE Subject Start: 432 Subject End: 512 ............................................................................................................................................................................................................................................................................................................................atatataaaacgttttcgatttatatataaactgatttcaataaatatataaatcgaaaacgttttgtatataaatcgcag.................................................................................. ............................................................................................................................................................................................................................................................................................................................atatataaatggttttcgttttatatataaatcgttttcaataaatatatagatcgtaagtgattcgtatataaatcgcag.................................................................................. HSP 2 e-value: 1.0E-6 bit: 56.0 Len: 52 Query Start:183 Query End:234 Subject Strand: NEGATIVE Subject Start: 617 Subject End: 668 ......................................................................................................................................................................................ttttcaacaacgaagaagaatttagaatcattccaaataagcgtccgaaagg..................................................................................................................................................................................................................................................... ......................................................................................................................................................................................ttttcaacaacgaagacgagtttggaatgattccaaataagcatccaaaagg..................................................................................................................................................................................................................................................... Subject: NC_002950_PG0340_PG0343|hypothetical protein:methionine gamma-lyase|POSITIVE:NEGATIVE|[376497,377270]|774 HSP 1 e-value: 8.0E-8 bit: 60.0 Len: 42 Query Start:183 Query End:224 Subject Strand: NEGATIVE Subject Start: 581 Subject End: 622 ......................................................................................................................................................................................ttttcaacaacgaagaagaatttagaatcattccaaataagc............................................................................................................................................................................................................................................................... ......................................................................................................................................................................................ttttcaacaacgaagacgagtttggaatcattccaaataagc............................................................................................................................................................................................................................................................... HSP 2 e-value: 1.0E-6 bit: 56.0 Len: 48 Query Start:298 Query End:345 Subject Strand: NEGATIVE Subject Start: 460 Subject End: 507 .........................................................................................................................................................................................................................................................................................................aaagatcgaatcacgattgatatataaaacgttttcgatttatatata...................................................................................................................................... .........................................................................................................................................................................................................................................................................................................aaaggtcgaatcacgatttatatataaagctttttcgatttgtatata...................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ GCCCAAAGAUAAAGCAUUUAUCCUGCUCCGGAGUUUCGUCUAAAUCGUUACGGUCCUCCGUAAAUCUCAAGAGUGCAUCGCUUCAUACGGGUGUAAAAACAUGCGAGGCGUAUCUUUCCUUUGAACAACUUAUUGCCCUCUCUUCAUAUCAUAAGACCCCUCUAAAAUACGUGCCAAAAAAAUUUUCAACAACGAAGAAGAAUUUAGAAUCAUUCCAAAUAAGCGUCCGAAAGGAAACGGAUUUUGAAAUCGGGAAGAUGAAAAAUUAGACUUCGUGAAGCGAAAAUCCACUAUUCAAAAGAUCGAAUCACGAUUGAUAUAUAAAACGUUUUCGAUUUAUAUAUAAACUGAUUUCAAUAAAUAUAUAAAUCGAAAACGUUUUGUAUAUAAAUCGCAGCCCUCAAAAAGCCUUUUCGUAAGGUGAUAAAACAGCGACACCCGCCCGAUUCCUUCUUGAAUCGGGCGGGUGUCGUAUAUGU ......((((..((((.......)))).(((((..((((..........))))..)))))...))))...(((.((.(((((((((.((.((((....)))).)).....(((((((((.....................(((((........(((....)))......(((...................)))..))))).(((((((((...........(..(((....)))..).)))))))))...)))))))))..............)))))))))...........................(((((.((((((((((((((((((((((((((((....((....))....)))))))))))))))))))))))))))).)))))..)).))).....(((((.....))))).........((((((((((((((((((......))))))))))))))))))...... (-146.61) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ ACAUAUACGACACCCGCCCGAUUCAAGAAGGAAUCGGGCGGGUGUCGCUGUUUUAUCACCUUACGAAAAGGCUUUUUGAGGGCUGCGAUUUAUAUACAAAACGUUUUCGAUUUAUAUAUUUAUUGAAAUCAGUUUAUAUAUAAAUCGAAAACGUUUUAUAUAUCAAUCGUGAUUCGAUCUUUUGAAUAGUGGAUUUUCGCUUCACGAAGUCUAAUUUUUCAUCUUCCCGAUUUCAAAAUCCGUUUCCUUUCGGACGCUUAUUUGGAAUGAUUCUAAAUUCUUCUUCGUUGUUGAAAAUUUUUUUGGCACGUAUUUUAGAGGGGUCUUAUGAUAUGAAGAGAGGGCAAUAAGUUGUUCAAAGGAAAGAUACGCCUCGCAUGUUUUUACACCCGUAUGAAGCGAUGCACUCUUGAGAUUUACGGAGGACCGUAACGAUUUAGACGAAACUCCGGAGCAGGAUAAAUGCUUUAUCUUUGGGC .......(((((((((((((((((......)))))))))))))))))..((((.(((...(((((...(((((((.(((((...((((((.(((((.((((((((((((((((((((((..((((....))))..)))))))))))))))))))))).))))).)))))).((((((....))))))............))))).))))))).........((((((.((((((((......((((((((.(((((((((((((((.....)))))..(((((((...(((..(((....)))..)))((((((..(((....)))...))))))..)))))))..))))).))))))))))))).....((.((((...(((.(((....))).))))))).))....))))))))...)))))).))))).)))..))))........((((((.......)))))).......... (-157.00) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 969 120 71 211 162 NC_002950:PG1694|5end_hypothetical_protein_1779010..1779240_NEGATIVE 409 230 183 209 162 NC_002950:PG1148|5end_hypothetical_protein_1231204..1231434_POSITIVE 378 469 433 37 1 NC_002950:PG1525|5end_isochorismate_synthase,_putative_1603865..1604095_NEGATIVE 376 89 45 195 146 NC_002950:PG1077|5end_electron_transfer_flavoprotein,_beta_subunit_1144639..1144869_POSITIVE 363 197 159 208 165 NC_002950:PG0996|5end_conserved_hypothetical_protein_TIGR01777_1055592..1055822_POSITIVE 360 465 432 198 161 NC_002950:PG1074|5end_D-lysine_5,6-aminomutase,_beta_subunit_1141963..1142193_POSITIVE 352 59 13 227 171 NC_002950:PG0227|5end_DNA_repair_protein_RadA_263978..264208_NEGATIVE 347 437 394 223 186 NC_002950:PG0538|5end_outer_membrane_efflux_protein_589142..589372_POSITIVE 341 469 436 75 42 NC_002950:PG1223|5end_hypothetical_protein_1299461..1299691_POSITIVE 332 470 432 226 190 NC_002950:PG0593|5end_htrA_protein_650362..650592_POSITIVE 326 470 431 188 142 NC_002950:PG0451|5end_CBS_domain_protein_491519..491749_POSITIVE 321 198 158 48 10 NC_002950:PG1573|5end_transcriptional_regulator,_Crp_family_1652168..1652398_NEGATIVE 320 466 432 231 186 NC_002950:PG1842|5end_acetyltransferase,_GNAT_family_1938241..1938471_POSITIVE 319 465 427 157 116 NC_002950:PG1978|5end_hypothetical_protein_2067337..2067567_NEGATIVE 319 64 21 182 134 NC_002950:PG1474|5end_conjugative_transposon_protein_TraO_1550816..1551046_NEGATIVE 318 80 31 127 83 NC_002950:PG1333|5end_hypothetical_protein_1415425..1415655_NEGATIVE 316 470 421 82 23 NC_002950:PG2038|5end_N-acetylmuramoyl-L-alanine_amidase,_putative_2138207..2138437_NEGATIVE 316 446 408 71 24 NC_002950:PG1786|5end_hypothetical_protein_1874358..1874588_POSITIVE 316 59 12 96 46 NC_002950:PG1781|5end_uridine_kinase_1870023..1870253_POSITIVE 315 70 21 215 167 NC_002950:PG1248|5end_hypothetical_protein_1326532..1326762_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 498 469 424 50 1 NC_002950:PG1274|3end_elongation_factor_P_1352489..1352639_POSITIVE 381 217 171 98 54 NC_002950:PG2166|3end_hypothetical_protein_2271999..2272149_POSITIVE 373 470 424 51 1 NC_002950:PG0568|3end_elongation_factor_P_623999..624149_NEGATIVE 371 470 431 71 35 NC_002950:PG2147|3end_xanthine_phosphoribosyltransferase_2254819..2254969_NEGATIVE 356 59 13 139 88 NC_002950:PG2199|3end_ABC_transporter,_ATP-binding_protein,_putative_2304786..2304936_NEGATIVE 341 394 361 44 11 NC_002950:PG0773|3end_hypothetical_protein_825348..825498_POSITIVE 336 468 440 43 8 NC_002950:PG1837|3end_hemagglutinin_protein_HagA_1936734..1936884_POSITIVE 330 467 430 45 2 NC_002950:PG1247|3end_3-dehydroquinate_synthase_1325585..1325735_POSITIVE 328 467 429 145 102 NC_002950:PG1786|3end_hypothetical_protein_1875322..1875472_POSITIVE 322 470 424 51 9 NC_002950:PG1866|3end_hypothetical_protein_1964736..1964886_POSITIVE 320 470 424 141 93 NC_002950:PG0114|3end_hypothetical_protein_137998..138148_POSITIVE 318 80 31 130 86 NC_002950:PG1334|3end_band_7/Mec-2_family_protein_1415422..1415572_NEGATIVE 317 470 432 141 90 NC_002950:PG0555|3end_DNA-binding_protein,_histone-like_family_611716..611866_NEGATIVE 313 470 432 147 116 NC_002950:PG1687|3end_HIT_family_protein_1773812..1773962_NEGATIVE 308 468 432 84 48 NC_002950:PG1133|3end_hypothetical_protein_1214103..1214253_POSITIVE 307 470 421 135 77 NC_002950:PG0330|3end_DNA-binding_protein,_histone-like_family_364478..364628_NEGATIVE 305 470 432 60 2 NC_002950:PG0583|3end_cell_division_protein_FtsA_641944..642094_POSITIVE 304 69 23 151 91 NC_002950:PG2101|3end_hypothetical_protein_2210278..2210428_NEGATIVE 301 60 12 146 99 NC_002950:PG1484|3end_hypothetical_protein_1559275..1559425_NEGATIVE 300 347 310 51 14 NC_002950:PG0609|3end_hypothetical_protein_663355..663505_POSITIVE