Origin IGS: tgttgatctataaattatttatgagttaaagtgacgaaggctgtgaaaaggaaccaggcacacagaagagaaggaacctgaattttgcgagtagcaacacagccagtgttcccagttatataaaacaaccccagggatgcctttactacacccctgaggttcttttaaataacttgttccattgccggatttcgtctattgttcagtcatccgttcgtcgttgaatcggtgaaatctttttacatggctgtgaaagaggccaagaagccacagacaatccctgggaagttggctataacgattggccaatccttcttcttacgaataaaaccatatcctacccacagtacgcagttgatacctgcgaccattggctgaagccaatcacctttatgtccagagagattggaaccaatctgtggaatataagaaacatacatcgccatagctgttgccgtggcaatccaaccgagaactgacaaaaatttttcttgattcattttactaccatgtttagttcttgtgtttagcaaagatagtattcgcaaattaatcaaagtaggtatttaacaaagaaaaatatatgaggtcgatgattggtttaaacactgtatgttgcgccttctctgatgctatttctgtgccggcatagctctctgaggttgtacgagtgcagattcgattctcaaatatccatcgtgattattgttacacttgtgaaaattttcatggccgacatccgaataaagagaataccctgcgagagtaacagttctcttgcagggcattctttttttgttccgtggacgtcga .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 tcgacgtccacggaacaaaaaaagaatgccctgcaagagaactgttactctcgcagggtattctctttattcggatgtcggccatgaaaattttcacaagtgtaacaataatcacgatggatatttgagaatcgaatctgcactcgtacaacctcagagagctatgccggcacagaaatagcatcagagaaggcgcaacatacagtgtttaaaccaatcatcgacctcatatatttttctttgttaaatacctactttgattaatttgcgaatactatctttgctaaacacaagaactaaacatggtagtaaaatgaatcaagaaaaatttttgtcagttctcggttggattgccacggcaacagctatggcgatgtatgtttcttatattccacagattggttccaatctctctggacataaaggtgattggcttcagccaatggtcgcaggtatcaactgcgtactgtgggtaggatatggttttattcgtaagaagaaggattggccaatcgttatagccaacttcccagggattgtctgtggcttcttggcctctttcacagccatgtaaaaagatttcaccgattcaacgacgaacggatgactgaacaatagacgaaatccggcaatggaacaagttatttaaaagaacctcaggggtgtagtaaaggcatccctggggttgttttatataactgggaacactggctgtgttgctactcgcaaaattcaggttccttctcttctgtgtgcctggttccttttcacagccttcgtcactttaactcataaataatttatagatcaaca Mask Tandem Repeat Region ================================================ tgttgatctataaattatttatgagttaaagtgacgaaggctgtgaaaaggaaccaggcacacagaagagaaggaacctgaattttgcgagtagcaacacagccagtgttcccagttatataaaacaaccccagggatgcctttactacacccctgaggttcttttaaataacttgttccattgccggatttcgtctattgttcagtcatccgttcgtcgttgaatcggtgaaatctttttacatggctgtgaaagaggccaagaagccacagacaatccctgggaagttggctataacgattggccaatccttcttcttacgaataaaaccatatcctacccacagtacgcagttgatacctgcgaccattggctgaagccaatcacctttatgtccagagagattggaaccaatctgtggaatataagaaacatacatcgccatagctgttgccgtggcaatccaaccgagaactgacaaaaatttttcttgattcattttactaccatgtttagttcttgtgtttagcaaagatagtattcgcaaattaatcaaagtaggtatttaacaaagaaaaatatatgaggtcgatgattggtttaaacactgtatgttgcgccttctctgatgctatttctgtgccggcatagctctctgaggttgtacgagtgcagattcgattctcaaatatccatcgtgattattgttacacttgtgaaaattttcatggccgacatccgaataaagagaataccctgcgagagtaacagttctcttgcagggcattctttttttgttccgtggacgtcga Find is-nt database================================================ Query_seq: PG1685:PG1687|PG1685:PG1687:hypothetical protein:HIT family protein:<-<-:1773089..1773901 813 tgttgatctataaattatttatgagttaaagtgacgaaggctgtgaaaaggaaccaggcacacagaagagaaggaacctgaattttgcgagtagcaacacagccagtgttcccagttatataaaacaaccccagggatgcctttactacacccctgaggttcttttaaataacttgttccattgccggatttcgtctattgttcagtcatccgttcgtcgttgaatcggtgaaatctttttacatggctgtgaaagaggccaagaagccacagacaatccctgggaagttggctataacgattggccaatccttcttcttacgaataaaaccatatcctacccacagtacgcagttgatacctgcgaccattggctgaagccaatcacctttatgtccagagagattggaaccaatctgtggaatataagaaacatacatcgccatagctgttgccgtggcaatccaaccgagaactgacaaaaatttttcttgattcattttactaccatgtttagttcttgtgtttagcaaagatagtattcgcaaattaatcaaagtaggtatttaacaaagaaaaatatatgaggtcgatgattggtttaaacactgtatgttgcgccttctctgatgctatttctgtgccggcatagctctctgaggttgtacgagtgcagattcgattctcaaatatccatcgtgattattgttacacttgtgaaaattttcatggccgacatccgaataaagagaataccctgcgagagtaacagttctcttgcagggcattctttttttgttccgtggacgtcga Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PG1685:PG1687|PG1685:PG1687:hypothetical protein:HIT family protein:<-<-:1773089..1773901 813 tgttgatctataaattatttatgagttaaagtgacgaaggctgtgaaaaggaaccaggcacacagaagagaaggaacctgaattttgcgagtagcaacacagccagtgttcccagttatataaaacaaccccagggatgcctttactacacccctgaggttcttttaaataacttgttccattgccggatttcgtctattgttcagtcatccgttcgtcgttgaatcggtgaaatctttttacatggctgtgaaagaggccaagaagccacagacaatccctgggaagttggctataacgattggccaatccttcttcttacgaataaaaccatatcctacccacagtacgcagttgatacctgcgaccattggctgaagccaatcacctttatgtccagagagattggaaccaatctgtggaatataagaaacatacatcgccatagctgttgccgtggcaatccaaccgagaactgacaaaaatttttcttgattcattttactaccatgtttagttcttgtgtttagcaaagatagtattcgcaaattaatcaaagtaggtatttaacaaagaaaaatatatgaggtcgatgattggtttaaacactgtatgttgcgccttctctgatgctatttctgtgccggcatagctctctgaggttgtacgagtgcagattcgattctcaaatatccatcgtgattattgttacacttgtgaaaattttcatggccgacatccgaataaagagaataccctgcgagagtaacagttctcttgcagggcattctttttttgttccgtggacgtcga Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PG1685:PG1687|PG1685:PG1687:hypothetical protein:HIT family protein:<-<-:1773089..1773901 813 tgttgatctataaattatttatgagttaaagtgacgaaggctgtgaaaaggaaccaggcacacagaagagaaggaacctgaattttgcgagtagcaacacagccagtgttcccagttatataaaacaaccccagggatgcctttactacacccctgaggttcttttaaataacttgttccattgccggatttcgtctattgttcagtcatccgttcgtcgttgaatcggtgaaatctttttacatggctgtgaaagaggccaagaagccacagacaatccctgggaagttggctataacgattggccaatccttcttcttacgaataaaaccatatcctacccacagtacgcagttgatacctgcgaccattggctgaagccaatcacctttatgtccagagagattggaaccaatctgtggaatataagaaacatacatcgccatagctgttgccgtggcaatccaaccgagaactgacaaaaatttttcttgattcattttactaccatgtttagttcttgtgtttagcaaagatagtattcgcaaattaatcaaagtaggtatttaacaaagaaaaatatatgaggtcgatgattggtttaaacactgtatgttgcgccttctctgatgctatttctgtgccggcatagctctctgaggttgtacgagtgcagattcgattctcaaatatccatcgtgattattgttacacttgtgaaaattttcatggccgacatccgaataaagagaataccctgcgagagtaacagttctcttgcagggcattctttttttgttccgtggacgtcga Intra-Species Hit: Count: 0 Inter-species Hit: Count: 17 Min: 243 Max: 515 Len: 273 Subject: UniRef90_Q73JY4 Cluster: Hypothetical protein; n=1; Treponema denticola|Rep: Hypothetical protein - Treponema denticola HSP 1 e-value: 3.0E-27 bit: 124.0 Len: 246 Query Start:243 Query End:488 Subject Strand: null Subject Start: 4 Subject End: 86 .................................................................................................................................................................................................................................................. K F L S V L G W I A T A T A M A M Y V S Y I P Q I G S N L S G H K G D W L Q P M V A G I N C V L W V G Y G F I R K - K K D W P I V I A N F P G I V C G F L A S F T A M ..................................................................................................................................................................................................................................................................................................................................... .................................................................................................................................................................................................................................................. K F F A V L G W V A T A T A M A M Y V S Y I P Q I S N N L S G M K G N W L Q P L V A A I N C V L W V T Y G L M K K P K R D W P I A F A N S P G I F F G L V A F I T A L ..................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q9CHT9 Cluster: Hypothetical protein ygbF; n=1; Lactococcus lactis subsp. lactis|Rep: Hypothetical protein ygbF - Lactococcus lactis subsp. lactis (Streptococcus lactis) HSP 1 e-value: 3.0E-22 bit: 108.0 Len: 258 Query Start:243 Query End:500 Subject Strand: null Subject Start: 1 Subject End: 86 .................................................................................................................................................................................................................................................. M N Q E K F L S V L G W I A T A T A M A M Y V S Y I P Q I G S N L S G H K G D W L Q P M V A G I N C V L W V G Y G F I R K K K D W P I V I A N F P G I V C G F L A S F T A M ......................................................................................................................................................................................................................................................................................................................... .................................................................................................................................................................................................................................................. M N Q E K F I K Y L S W V A T G M S V M M Y V S Y L P Q I A N N L S G M K G N P I Q P L V A A I N C T L W V T Y G I G K K P R D L A L A T A N F P G I I F G L V T F F T A L ......................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q6FFR8 Cluster: Hypothetical protein; n=1; Acinetobacter sp. ADP1|Rep: Hypothetical protein - Acinetobacter sp. (strain ADP1) HSP 1 e-value: 8.0E-22 bit: 106.0 Len: 261 Query Start:243 Query End:503 Subject Strand: null Subject Start: 3 Subject End: 87 .................................................................................................................................................................................................................................................. K M N Q E K F L S V L G W I A T A T A M A M Y V S Y I P Q I G S N L S G H K G D W L Q P M V A G I N C V L W V G Y G F I R K K K D W P I V I A N F P G I V C G F L A S F T A M ...................................................................................................................................................................................................................................................................................................................... .................................................................................................................................................................................................................................................. K K N D E R F I Q I L G W V A T F T A I G M Y V S Y I P Q I M N N L A G T K G N P I Q P F V A A I N C L L W V L Y G L - - K R K D Y P L A A A N A P G I L F G A A A F F T S L ...................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q8DT74 Cluster: Hypothetical protein; n=1; Streptococcus mutans|Rep: Hypothetical protein - Streptococcus mutans HSP 1 e-value: 1.0E-20 bit: 102.0 Len: 234 Query Start:243 Query End:476 Subject Strand: null Subject Start: 3 Subject End: 80 .................................................................................................................................................................................................................................................. V L G W I A T A T A M A M Y V S Y I P Q I G S N L S G H K G D W L Q P M V A G I N C V L W V G Y G F I R K K K D W P I V I A N F P G I V C G F L A S F T A M ................................................................................................................................................................................................................................................................................................................................................. .................................................................................................................................................................................................................................................. I L G W V A T F M S I M M Y V S Y I P Q I M N N L A G N K G D F I Q P S V A A L N C T L W V I Y G L C K E K R D L P L A A A N M P G I V F G L I A A I T A L ................................................................................................................................................................................................................................................................................................................................................. Subject: UniRef90_A3CKZ1 Cluster: Hypothetical protein; n=1; Streptococcus sanguinis SK36|Rep: Hypothetical protein - Streptococcus sanguinis (strain SK36) HSP 1 e-value: 2.0E-20 bit: 102.0 Len: 273 Query Start:243 Query End:515 Subject Strand: null Subject Start: 2 Subject End: 91 .................................................................................................................................................................................................................................................. K H G S K M N Q E K F L S V L G W I A T A T A M A M Y V S Y I P Q I G S N L S G H K G D W L Q P M V A G I N C V L W V G Y G F I R K K K D W P I V I A N F P G I V C G F L A S F T A M .......................................................................................................................................................................................................................................................................................................... .................................................................................................................................................................................................................................................. K E A L K M S - E K Q M K V L G W V A T F M S V M M Y V S Y F P Q I M N N L A G Q K G N F I Q P L V A A I N C S L W V Y Y G L F K K E R D I P L A A A N A P G I V F G L V T A I T A L .......................................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q7P2Z5 Cluster: Hypothetical Membrane Spanning Protein; n=1; Fusobacterium nucleatum subsp. vincentii ATCC 49256|Rep: Hypothetical Membrane Spanning Protein - Fusobacterium nucleatum subsp. vincentii ATCC 49256 HSP 1 e-value: 8.0E-20 bit: 100.0 Len: 249 Query Start:243 Query End:491 Subject Strand: null Subject Start: 3 Subject End: 85 .................................................................................................................................................................................................................................................. E K F L S V L G W I A T A T A M A M Y V S Y I P Q I G S N L S G H K G D W L Q P M V A G I N C V L W V G Y G F I R K K K D W P I V I A N F P G I V C G F L A S F T A M .................................................................................................................................................................................................................................................................................................................................. .................................................................................................................................................................................................................................................. E K Q S K I F G Y L G S A L S I L M Y V S Y I P Q I M G N L S G H K T S F V Q P L V A T I N C T I W V I Y G L F K K N K D L P I I F A N L P G I V F G L I A T I T A L .................................................................................................................................................................................................................................................................................................................................. Subject: UniRef90_A3CLI6 Cluster: Hypothetical protein; n=1; Streptococcus sanguinis SK36|Rep: Hypothetical protein - Streptococcus sanguinis (strain SK36) HSP 1 e-value: 1.0E-19 bit: 99.4 Len: 252 Query Start:243 Query End:494 Subject Strand: null Subject Start: 2 Subject End: 85 .................................................................................................................................................................................................................................................. Q E K F L S V L G W I A T A T A M A M Y V S Y I P Q I G S N L S G H K G D W L Q P M V A G I N C V L W V G Y G F I R K K K D W P I V I A N F P G I V C G F L A S F T A M ............................................................................................................................................................................................................................................................................................................................... .................................................................................................................................................................................................................................................. K E K H M L I L G W A A T L M S V M M Y V S Y I S Q I M N N L A G N K G D F I Q P S V A A L N C T L W V I Y G L F K D K R D I P L A A A N M P G I V F G L I T A A T A L ............................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q03WJ9 Cluster: Small conserved membrane protein; n=1; Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293|Rep: Small conserved membrane protein - Leuconostoc mesenteroides subsp. mesenteroides (strain ATCC 8293 /NCDO 523) HSP 1 e-value: 2.0E-19 bit: 98.6 Len: 258 Query Start:243 Query End:500 Subject Strand: null Subject Start: 1 Subject End: 86 .................................................................................................................................................................................................................................................. M N Q E K F L S V L G W I A T A T A M A M Y V S Y I P Q I G S N L S G H K G D W L Q P M V A G I N C V L W V G Y G F I R K K K D W P I V I A N F P G I V C G F L A S F T A M ......................................................................................................................................................................................................................................................................................................................... .................................................................................................................................................................................................................................................. M K E T N F I K Y L S W I A T V M A V L M Y V S Y I P Q I A D N L A G S K A N P L Q P L V A A I N C T L W V I Y A L K K N H R D I P V A L A N F P G I I F G L I A F V T A V ......................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q88ZW1 Cluster: Integral membrane protein; n=2; Lactobacillaceae|Rep: Integral membrane protein - Lactobacillus plantarum HSP 1 e-value: 7.0E-18 bit: 93.6 Len: 240 Query Start:249 Query End:488 Subject Strand: null Subject Start: 7 Subject End: 86 ........................................................................................................................................................................................................................................................ K F L S V L G W I A T A T A M A M Y V S Y I P Q I G S N L S G H K G D W L Q P M V A G I N C V L W V G Y G F I R K K K D W P I V I A N F P G I V C G F L A S F T ..................................................................................................................................................................................................................................................................................................................................... ........................................................................................................................................................................................................................................................ K Y L K L I S K L A T F T C I A M Y V S Y I P Q I I S N F S G D P V S P L Q P L V A M I N G I L W T G Y G W F K T Y K D W P V I I S N V P G V I F G F I T V L T ..................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q1U945 Cluster: Hypothetical protein; n=2; Lactobacillus reuteri|Rep: Hypothetical protein - Lactobacillus reuteri 100-23 HSP 1 e-value: 9.0E-18 bit: 93.2 Len: 273 Query Start:243 Query End:515 Subject Strand: null Subject Start: 8 Subject End: 105 .................................................................................................................................................................................................................................................. K H G S K M N Q E K - - - - - - - F L S V L G W I A T A T A M A M Y V S Y I P Q I G S N L S G H K G D W L Q P M V A G I N C V L W V G Y G F I R K K K D W P I V I A N F P G I V C G F L A S F T A M .......................................................................................................................................................................................................................................................................................................... .................................................................................................................................................................................................................................................. E H P K K V N E K K P V I Q E T K F I D I L S K V A T V V A I L M Y V S Y I S Q I K N N L A G N Y G A P L Q P L V A A L N C T L W C I Y A Y F K Q Q R D W P V F W A N F P G I I F G L I T F I T C L .......................................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q043Z4 Cluster: Small conserved membrane protein; n=2; Lactobacillus|Rep: Small conserved membrane protein - Lactobacillus gasseri (strain ATCC 33323 / DSM 20243) HSP 1 e-value: 1.0E-17 bit: 92.8 Len: 261 Query Start:243 Query End:503 Subject Strand: null Subject Start: 6 Subject End: 92 .................................................................................................................................................................................................................................................. K M N Q E K F L S V L G W I A T A T A M A M Y V S Y I P Q I G S N L S G H K G D W L Q P M V A G I N C V L W V G Y G F I R K K K D W P I V I A N F P G I V C G F L A S F T A M ...................................................................................................................................................................................................................................................................................................................... .................................................................................................................................................................................................................................................. K S F D N K T V L T I G R I G S V L S V L M Y V S Y I P Q I M N N L Q G N Y G N P I Q P L V A A I N C L I W V L Y A L L R E K K D W P L F V A N F P G I L F G L T T F I T S L ...................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q03W80 Cluster: Small conserved membrane protein; n=1; Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293|Rep: Small conserved membrane protein - Leuconostoc mesenteroides subsp. mesenteroides (strain ATCC 8293 /NCDO 523) HSP 1 e-value: 3.0E-15 bit: 84.7 Len: 240 Query Start:249 Query End:488 Subject Strand: null Subject Start: 21 Subject End: 100 ........................................................................................................................................................................................................................................................ K F L S V L G W I A T A T A M A M Y V S Y I P Q I G S N L S G H K G D W L Q P M V A G I N C V L W V G Y G F I R K K K D W P I V I A N F P G I V C G F L A S F T ..................................................................................................................................................................................................................................................................................................................................... ........................................................................................................................................................................................................................................................ R F L K L L S K V A V V F C C L M Y I S Y I P Q I T A N L S G N P V S V L Q P L C A T V N A T L W V T Y G W L K T Y K D W P V I L A N I P G V I F G V V T V V T ..................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_UPI0000DAFBF4 Cluster: hypothetical protein Ccon1_01001341; n=1; Campylobacter concisus 13826|Rep: hypothetical protein Ccon1_01001341 - Campylobacter concisus 13826 HSP 1 e-value: 2.0E-14 bit: 82.4 Len: 195 Query Start:246 Query End:440 Subject Strand: null Subject Start: 1 Subject End: 65 ..................................................................................................................................................................................................................................................... M Y V S Y I P Q I G S N L S G H K G D W L Q P M V A G I N C V L W V G Y G F I R K K K D W P I V I A N F P G I V C G F L A S F T A ..................................................................................................................................................................................................................................................................................................................................................................................... ..................................................................................................................................................................................................................................................... M Y F S Y I P Q I M G N L D G N K T P Y I Q P L A A A L N C T I W T S Y G L L K S K R D Y P L A A A N L P G I I F G L L A T I T A ..................................................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q03B62 Cluster: Small conserved membrane protein; n=1; Lactobacillus casei ATCC 334|Rep: Small conserved membrane protein - Lactobacillus casei (strain ATCC 334) HSP 1 e-value: 2.0E-14 bit: 82.4 Len: 240 Query Start:249 Query End:488 Subject Strand: null Subject Start: 18 Subject End: 97 ........................................................................................................................................................................................................................................................ K F L S V L G W I A T A T A M A M Y V S Y I P Q I G S N L S G H K G D W L Q P M V A G I N C V L W V G Y G F I R K K K D W P I V I A N F P G I V C G F L A S F T ..................................................................................................................................................................................................................................................................................................................................... ........................................................................................................................................................................................................................................................ K R L K L L S K V A T F T C I L M Y V S Y I P E I I A N F S G N P V N P I Q P L V A M I N A T L W T F Y G W T K T Y K D W P I I I S N M P G I L F G L V T F I T ..................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q831G1 Cluster: Hypothetical protein; n=1; Enterococcus faecalis|Rep: Hypothetical protein - Enterococcus faecalis (Streptococcus faecalis) HSP 1 e-value: 3.0E-12 bit: 75.1 Len: 249 Query Start:243 Query End:491 Subject Strand: null Subject Start: 5 Subject End: 90 .................................................................................................................................................................................................................................................. E K F L S V L G W I A T A T A M A M Y V S Y I P Q I G S N L S G H K G D W L Q P M V A G I N C V L W V - - - G Y G F I R K K K D W P I V I A N F P G I V C G F L A S F T A M .................................................................................................................................................................................................................................................................................................................................. .................................................................................................................................................................................................................................................. K K A L H A I A V I A S V M S V L M Y V S Y I P Q I Y G N L H G E K G N P T Q P L V A M I N C I F W T I H G L Y G D D G E T R D K S I I F A N V P G I I F G F F A F I T A L .................................................................................................................................................................................................................................................................................................................................. Subject: UniRef90_Q8RFU7 Cluster: Hypothetical membrane-spanning protein; n=1; Fusobacterium nucleatum subsp. nucleatum|Rep: Hypothetical membrane-spanning protein - Fusobacterium nucleatum subsp. nucleatum HSP 1 e-value: 5.0E-11 bit: 70.9 Len: 162 Query Start:330 Query End:491 Subject Strand: null Subject Start: 3 Subject End: 56 ......................................................................................................................................................................................................................................................................................................................................... E K F L S V L G W I A T A T A M A M Y V S Y I P Q I G S N L S G H K G D W L Q P M V A G I N C V L W V G Y G .................................................................................................................................................................................................................................................................................................................................. ......................................................................................................................................................................................................................................................................................................................................... E K Q T K I I G W M G T T L S I L M Y V S Y I P Q I I G N L N G N K T S F I Q P L V A A I N C T I W V S Y G .................................................................................................................................................................................................................................................................................................................................. Subject: UniRef90_Q03T79 Cluster: Small conserved membrane protein; n=1; Lactobacillus brevis ATCC 367|Rep: Small conserved membrane protein - Lactobacillus brevis (strain ATCC 367 / JCM 1170) HSP 1 e-value: 5.0E-11 bit: 70.9 Len: 192 Query Start:249 Query End:440 Subject Strand: null Subject Start: 7 Subject End: 70 ........................................................................................................................................................................................................................................................ M Y V S Y I P Q I G S N L S G H K G D W L Q P M V A G I N C V L W V G Y G F I R K K K D W P I V I A N F P G I V C G F L A S F T ..................................................................................................................................................................................................................................................................................................................................................................................... ........................................................................................................................................................................................................................................................ M Y V A Y I P E I V A N F M G H P V S P L Q P F T A A I C A F A W V E Y G W H R A H K D W P I I I S N I P G V V L G I I T V V T ..................................................................................................................................................................................................................................................................................................................................................................................... tgttgatctataaattatttatgagttaaagtgacgaaggctgtgaaaaggaaccaggcacacagaagagaaggaacctgaattttgcgagtagcaacacagccagtgttcccagttatataaaacaaccccagggatgcctttactacacccctgaggttcttttaaataacttgttccattgccggatttcgtctattgttcagtcatccgttcgtcgttgaatcggtgaaatctttttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagttcttgtgtttagcaaagatagtattcgcaaattaatcaaagtaggtatttaacaaagaaaaatatatgaggtcgatgattggtttaaacactgtatgttgcgccttctctgatgctatttctgtgccggcatagctctctgaggttgtacgagtgcagattcgattctcaaatatccatcgtgattattgttacacttgtgaaaattttcatggccgacatccgaataaagagaataccctgcgagagtaacagttctcttgcagggcattctttttttgttccgtggacgtcga Predict ORF larger than 30AA ================================================ Protein_Len: 48 Strand: + Start: 78 End: 221 ............................................................................. M N F A S S N T A S V P S Y I K Q P Q G C L Y Y T P E V L L N N L F H C R I S S I V Q S S V R R ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 60 Strand: + Start: 169 End: 375 ........................................................................................................................................................................ M T C S I A G F R L L F S H P F V V E S V K S F Y M A V K E A K K P Q T I P G K L A I T I G Q S F F L R I K P Y P T H S ...................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 225 End: 476 ................................................................................................................................................................................................................................ M G E I F L H G C E R G Q E A T D N P W E V G Y N D W P I L L L T N K T I S Y P Q Y A V D T C D H W L K P I T F M S R E ................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 32 Strand: + Start: 671 End: 766 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M Q I R F S N I H R D Y C Y T C E N F H G R H P N K E N T L R E ............................................... Protein_Len: 60 Strand: + Start: 609 End: 812 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ M Y V A P S L M L F L C R H S S L R L Y E C R F D S Q I S I V I I V T L V K I F M A D I R I K R I P C E S N S S L A G H . Protein_Len: 51 Strand: - Start: 636 End: 788 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... K Q A P M A R Q P Q V L A S E I R L Y G D H N N N C K H F N E H G V D S Y L S Y G A L T V T R K C P M ......................... Protein_Len: 47 Strand: - Start: 553 End: 693 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ D F Y T N L L S F Y I L D I I P K F V T H Q A K E S A I E T G A Y S E S T T R T C I R N E F M ........................................................................................................................ Protein_Len: 31 Strand: - Start: 394 End: 486 ......................................................................................................................................................................................................................................................................................................................................................................................................... T W L S Q F W D T S Y L F C V D G Y S N G H C D L R S S V F M ....................................................................................................................................................................................................................................................................................................................................... Protein_Len: 52 Strand: - Start: 341 End: 496 .................................................................................................................................................................................................................................................................................................................................................... G C Y A T S V Q S W Q S F G I V K I D L S I P V L R H F I L F M C R W L Q Q R P L G V S F Q C F N K K M ............................................................................................................................................................................................................................................................................................................................. Protein_Len: 60 Strand: - Start: 243 End: 566 .................................................................................................................................................................................................................................................. G K H G S L N S G I Q P I Y S V Y M A M A T A T A I W G L V S L F K E Q N M K S G H K T R T N L L S L I R L N I L T P M ....................................................................................................................................................................................................................................................... Protein_Len: 37 Strand: - Start: 199 End: 309 ...................................................................................................................................................................................................... Q E T M R E D N F R H F R K V H S H F L G L L W L C D R P L Q S Y R N A M ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 39 Strand: - Start: 22 End: 138 ..................... S N F H R L S H F P V L C V S S F S G S N Q S Y C C L W H E W N Y L V V G P M ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 39 Strand: - Start: 18 End: 134 ................. K H T L T V F A T F L F W A C L L S P V Q I K R T A V C G T N G T I Y F L G M ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... tgttgatctataaattatttatgagttaaagtgacgaaggctgtgaaaaggaaccaggcacacagaagagaaggaacctgaattttgcgagtagcaacacagccagtgttcccagttatataaaacaaccccagggatgcctttactacacccctgaggttcttttaaataacttgttccattgccggatttcgtctattgttcagtcatccgttcgtcgttgaatcggtgaaatctttttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagttcttgtgtttagcaaagatagtattcgcaaattaatcaaagtaggtatttaacaaagaaaaatatatgaggtcgatgattggtttaaacactgtatgttgcgccttctctgatgctatttctgtgccggcatagctctctgaggttgtacgagtgcagattcgattctcaaatatccatcgtgattattgttacacttgtgaaaattttcatggccgacatccgaataaagagaataccctgcgagagtaacagttctcttgcagggcattctttttttgttccgtggacgtcga Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ tgttgatctataaattatttatgagttaaagtgacgaaggctgtgaaaaggaaccaggcacacagaagagaaggaacctgaattttgcgagtagcaacacagccagtgttcccagttatataaaacaaccccagggatgcctttactacacccctgaggttcttttaaataacttgttccattgccggatttcgtctattgttcagtcatccgttcgtcgttgaatcggtgaaatctttttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagttcttgtgtttagcaaagatagtattcgcaaattaatcaaagtaggtatttaacaaagaaaaatatatgaggtcgatgattggtttaaacactgtatgttgcgccttctctgatgctatttctgtgccggcatagctctctgaggttgtacgagtgcagattcgattctcaaatatccatcgtgattattgttacacttgtgaaaattttcatggccgacatccgaataaagagaataccctgcgagagtaacagttctcttgcagggcattctttttttgttccgtggacgtcga Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 76 HP_score: -9.1 Tail_Score: -3.73068 Start: 115 End: 173 Full_Region: CAGCCAGTGTTCCCA GTTATATAAAACAACCCCAGGGATG CCTTTACTA CACCCCTGAGGTTCTTTTAAATAAC TTGTTCCATTGCCGG ..................................................................................................................GTTATATAAAACAACCCCAGGGATGCCTTTACTACACCCCTGAGGTTCTTTTAAATAAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ TransTerm Strand: - Conf: 81 HP_score: -7.3 Tail_Score: -4.55287 Start: 126 End: 162 Full_Region: acaagttatttaaaa gaacctcaggggtgt agtaaag gcatccctggggttg ttttatataactggg .............................................................................................................................gaacctcaggggtgtagtaaaggcatccctggggttg........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 86 HP_score: -9.0 Tail_Score: -4.38744 Start: 129 End: 159 Full_Region: agttatttaaaagaa cctcaggggtgt agtaaag gcatccctgggg ttgttttatataact ................................................................................................................................cctcaggggtgtagtaaaggcatccctgggg.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: - Conf: 95 HP_score: -11.8 Tail_Score: -4.19678 Start: 749 End: 792 Full_Region: tccacggaacaaaaa aagaatgccctgcaagagaa ctgt tactctcgcagggtattctc tttattcggatgtcg ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................aagaatgccctgcaagagaactgttactctcgcagggtattctc..................... TransTerm Strand: - Conf: 100 HP_score: -14.4 Tail_Score: -3.69469 Start: 751 End: 790 Full_Region: cacggaacaaaaaaa gaatgccctgcaagagaa ctgt tactctcgcagggtattc tctttattcggatgt ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gaatgccctgcaagagaactgttactctcgcagggtattc....................... TransTerm Strand: + Conf: 100 HP_score: -14.4 Tail_Score: -5.8187 Start: 751 End: 790 Full_Region: ACATCCGAATAAAGA GAATACCCTGCGAGAGTA ACAG TTCTCTTGCAGGGCATTC TTTTTTTGTTCCGTG ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATACCCTGCGAGAGTAACAGTTCTCTTGCAGGGCATTC....................... Find igs database================================================ Query_seq: PG1685:PG1687|PG1685:PG1687:hypothetical protein:HIT family protein:<-<-:1773089..1773901 813 tgttgatctataaattatttatgagttaaagtgacgaaggctgtgaaaaggaaccaggcacacagaagagaaggaacctgaattttgcgagtagcaacacagccagtgttcccagttatataaaacaaccccagggatgcctttactacacccctgaggttcttttaaataacttgttccattgccggatttcgtctattgttcagtcatccgttcgtcgttgaatcggtgaaatctttttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagttcttgtgtttagcaaagatagtattcgcaaattaatcaaagtaggtatttaacaaagaaaaatatatgaggtcgatgattggtttaaacactgtatgttgcgccttctctgatgctatttctgtgccggcatagctctctgaggttgtacgagtgcagattcgattctcaaatatccatcgtgattattgttacacttgtgaaaattttcatggccgacatccgaataaagagaataccctgcgagagtaacagttctcttgcagggcattctttttttgttccgtggacgtcga Intra-Species Hit: Count: 1 Min: 1 Max: 813 Len: 813 Subject: NC_002950_PG1685_PG1687|hypothetical protein:HIT family protein|NEGATIVE:NEGATIVE|[1773089,1773901]|813 HSP 1 e-value: 1.0E-155 bit: 549.0 Len: 298 Query Start:516 Query End:813 Subject Strand: POSITIVE Subject Start: 516 Subject End: 813 ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................agttcttgtgtttagcaaagatagtattcgcaaattaatcaaagtaggtatttaacaaagaaaaatatatgaggtcgatgattggtttaaacactgtatgttgcgccttctctgatgctatttctgtgccggcatagctctctgaggttgtacgagtgcagattcgattctcaaatatccatcgtgattattgttacacttgtgaaaattttcatggccgacatccgaataaagagaataccctgcgagagtaacagttctcttgcagggcattcnnnnnnngttccgtggacgtcga ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................agttcttgtgtttagcaaagatagtattcgcaaattaatcaaagtaggtatttaacaaagaaaaatatatgaggtcgatgattggtttaaacactgtatgttgcgccttctctgatgctatttctgtgccggcatagctctctgaggttgtacgagtgcagattcgattctcaaatatccatcgtgattattgttacacttgtgaaaattttcatggccgacatccgaataaagagaataccctgcgagagtaacagttctcttgcagggcattctttttttgttccgtggacgtcga HSP 2 e-value: 1.0E-134 bit: 480.0 Len: 242 Query Start:1 Query End:242 Subject Strand: POSITIVE Subject Start: 1 Subject End: 242 tgttgatctataaattatttatgagttaaagtgacgaaggctgtgaaaaggaaccaggcacacagaagagaaggaacctgaattttgcgagtagcaacacagccagtgttcccagttatataaaacaaccccagggatgcctttactacacccctgaggttcttttaaataacttgttccattgccggatttcgtctattgttcagtcatccgttcgtcgttgaatcggtgaaatcttttta........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... tgttgatctataaattatttatgagttaaagtgacgaaggctgtgaaaaggaaccaggcacacagaagagaaggaacctgaattttgcgagtagcaacacagccagtgttcccagttatataaaacaaccccagggatgcctttactacacccctgaggttcttttaaataacttgttccattgccggatttcgtctattgttcagtcatccgttcgtcgttgaatcggtgaaatcttttta........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UGUUGAUCUAUAAAUUAUUUAUGAGUUAAAGUGACGAAGGCUGUGAAAAGGAACCAGGCACACAGAAGAGAAGGAACCUGAAUUUUGCGAGUAGCAACACAGCCAGUGUUCCCAGUUAUAUAAAACAACCCCAGGGAUGCCUUUACUACACCCCUGAGGUUCUUUUAAAUAACUUGUUCCAUUGCCGGAUUUCGUCUAUUGUUCAGUCAUCCGUUCGUCGUUGAAUCGGUGAAAUCUUUUUACAUGGCUGUGAAAGAGGCCAAGAAGCCACAGACAAUCCCUGGGAAGUUGGCUAUAACGAUUGGCCAAUCCUUCUUCUUACGAAUAAAACCAUAUCCUACCCACAGUACGCAGUUGAUACCUGCGACCAUUGGCUGAAGCCAAUCACCUUUAUGUCCAGAGAGAUUGGAACCAAUCUGUGGAAUAUAAGAAACAUACAUCGCCAUAGCUGUUGCCGUGGCAAUCCAACCGAGAACUGACAAAAAUUUUUCUUGAUUCAUUUUACUACCAUGUUUAGUUCUUGUGUUUAGCAAAGAUAGUAUUCGCAAAUUAAUCAAAGUAGGUAUUUAACAAAGAAAAAUAUAUGAGGUCGAUGAUUGGUUUAAACACUGUAUGUUGCGCCUUCUCUGAUGCUAUUUCUGUGCCGGCAUAGCUCUCUGAGGUUGUACGAGUGCAGAUUCGAUUCUCAAAUAUCCAUCGUGAUUAUUGUUACACUUGUGAAAAUUUUCAUGGCCGACAUCCGAAUAAAGAGAAUACCCUGCGAGAGUAACAGUUCUCUUGCAGGGCAUUCUUUUUUUGUUCCGUGGACGUCGA ..((((..(((((.....)))))..))))..(((((..(((((((((((..((((.((((((((..((((((((..........((((.....))))..(((((((((.....((((((.(((((.((((.(((((.((.........)).))))).)))).))))).))))))(((((.......(((((..((((.........(((((.(((((....))))).)))))....((((((((....)))))))).(((......)))..)))))))))..(((((((((((((.......)))))))..)))))).....)))))......................(((((.......)))))..)))))))))..((........((((((((((...((((((....)))))).))).))))))).((((((((..((((..((....))..)))).....((((((..(.((((....(((((((((...........((((..((.((((((..((((....((.......))...)))))))))).))..))))..........))))))))).......)))).)..)))))).......)))))))))).))))))))..)).......)))))).((...)).......)))).((((((((......((((..(((...........)))..))))...))))))))....)))))))))))..(((..(((((((((((((.(((((((((((........))))))))))).))))))..))))))).)))..))))). (-231.71) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UCGACGUCCACGGAACAAAAAAAGAAUGCCCUGCAAGAGAACUGUUACUCUCGCAGGGUAUUCUCUUUAUUCGGAUGUCGGCCAUGAAAAUUUUCACAAGUGUAACAAUAAUCACGAUGGAUAUUUGAGAAUCGAAUCUGCACUCGUACAACCUCAGAGAGCUAUGCCGGCACAGAAAUAGCAUCAGAGAAGGCGCAACAUACAGUGUUUAAACCAAUCAUCGACCUCAUAUAUUUUUCUUUGUUAAAUACCUACUUUGAUUAAUUUGCGAAUACUAUCUUUGCUAAACACAAGAACUAAACAUGGUAGUAAAAUGAAUCAAGAAAAAUUUUUGUCAGUUCUCGGUUGGAUUGCCACGGCAACAGCUAUGGCGAUGUAUGUUUCUUAUAUUCCACAGAUUGGUUCCAAUCUCUCUGGACAUAAAGGUGAUUGGCUUCAGCCAAUGGUCGCAGGUAUCAACUGCGUACUGUGGGUAGGAUAUGGUUUUAUUCGUAAGAAGAAGGAUUGGCCAAUCGUUAUAGCCAACUUCCCAGGGAUUGUCUGUGGCUUCUUGGCCUCUUUCACAGCCAUGUAAAAAGAUUUCACCGAUUCAACGACGAACGGAUGACUGAACAAUAGACGAAAUCCGGCAAUGGAACAAGUUAUUUAAAAGAACCUCAGGGGUGUAGUAAAGGCAUCCCUGGGGUUGUUUUAUAUAACUGGGAACACUGGCUGUGUUGCUACUCGCAAAAUUCAGGUUCCUUCUCUUCUGUGUGCCUGGUUCCUUUUCACAGCCUUCGUCACUUUAACUCAUAAAUAAUUUAUAGAUCAACA (((((((((...(((.(((...((((((((((((.((((........)))).)))))))))))).))).))))))))))))...((((....)))).(((((...........((((.((...(.((((((..(((((.((.(((...........))).))......(((((.......(((..((((((((.((......((((((((....((.(((((..........(((((((((.(((......(((((.((.(((.((((((((.......))))).........))).))).)).))))).......))).))))))))).((((((.(((.(((((((.(((((((..((....))..))))))).))....((((....((((((((((((((((((((.(.((........))).))))))....)))))))...(((((.......)))))..)))))))....((((((((...(((....)))((((((..((((((..(((((((.(((.(((....)))))).)))))))...))))))))))))..))))))))...))))....)))))...)))))))))..))))).))..............((((....))))...((((((.(((((.((((((((((((((.......)))))))))))))).))))).))))))..)))))))).(((..((((.....))))....))))).))))))))..)))))))).))))).)))))).).)).)))))))))............................ (-246.53) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 997 80 31 171 122 NC_002950:PG1685|5end_hypothetical_protein_1772998..1773228_NEGATIVE 395 229 186 177 123 NC_002950:PG0712|5end_hypothetical_protein_767131..767361_NEGATIVE 386 665 629 121 83 NC_002950:PG0882|5end_hypothetical_protein_944195..944425_POSITIVE 382 670 621 74 25 NC_002950:PG0976|5end_phosphoribosylaminoimidazole-succinocarboxamide_synthase_1038326..1038556_POSITIVE 382 675 632 208 154 NC_002950:PG0558|5end_purine_nucleoside_phosphorylase_616331..616561_NEGATIVE 374 657 617 45 1 NC_002950:PG1121|5end_asparaginyl-tRNA_synthetase_1197555..1197785_NEGATIVE 373 409 361 71 17 NC_002950:PG1175|5end_ABC_transporter,_ATP-binding_protein,_putative_1255876..1256106_NEGATIVE 371 400 351 209 161 NC_002950:PG1817|5end_hypothetical_protein_1913035..1913265_NEGATIVE 371 648 607 185 133 NC_002950:PG1057|5end_hypothetical_protein_1123419..1123649_POSITIVE 363 650 609 168 128 NC_002950:PG0376|5end_30S_ribosomal_protein_S9_406399..406629_POSITIVE 360 390 342 60 10 NC_002950:PG0362|5end_hypothetical_protein_395301..395531_POSITIVE 358 482 441 60 3 NC_002950:PG1949|5end_malate_dehydrogenase_2039188..2039418_NEGATIVE 351 690 641 174 123 NC_002950:PG1761|5end_acetyltransferase,_GNAT_family_1847084..1847314_POSITIVE 351 689 641 61 4 NC_002950:PG0751|5end_porT_protein_797578..797808_NEGATIVE 350 673 632 48 9 NC_002950:PG1483|5end_conjugative_transposon_protein_TraE_1559085..1559315_NEGATIVE 349 478 431 193 144 NC_002950:PG2125|5end_transcriptional_regulator,_AraC_family_2232254..2232484_NEGATIVE 349 699 652 208 154 NC_002950:PG2111|5end_thiS_protein_2221482..2221712_NEGATIVE 349 677 631 219 161 NC_002950:PG1393|5end_penicillin-binding_protein_2,_putative_1476271..1476501_NEGATIVE 343 682 643 200 153 NC_002950:PG2029|5end_hypothetical_protein_2126543..2126773_POSITIVE 342 230 185 62 16 NC_002950:PG1675|5end_hypothetical_protein_1760182..1760412_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 362 410 362 81 33 NC_002950:PG1786|3end_hypothetical_protein_1875322..1875472_POSITIVE 359 388 344 129 84 NC_002950:PG1351|3end_hypothetical_protein_1432238..1432388_NEGATIVE 359 630 585 59 2 NC_002950:PG0771|3end_hypothetical_protein_824867..825017_POSITIVE 352 660 613 63 19 NC_002950:PG1392|3end_rod_shape-determining_protein_RodA,_putative_1472959..1473109_NEGATIVE 348 686 644 91 49 NC_002950:PG1942|3end_30S_ribosomal_protein_S12_2027946..2028096_NEGATIVE 341 660 616 135 77 NC_002950:PG1270|3end_hypothetical_protein_1349278..1349428_NEGATIVE 338 213 179 53 16 NC_002950:PG1465|3end_hypothetical_protein_1542706..1542856_POSITIVE 337 390 341 137 86 NC_002950:PG1633|3end_galactokinase_1714619..1714769_POSITIVE 337 229 184 124 80 NC_002950:PG1560|3end_dTDP-glucose_4,6-dehydratase_1639067..1639217_NEGATIVE 337 222 186 143 101 NC_002950:PG0713|3end_anthranilate_synthase_component_II_767153..767303_NEGATIVE 337 378 331 84 31 NC_002950:PG0670|3end_lipoprotein,_putative_721971..722121_POSITIVE 334 659 614 83 27 NC_002950:PG0093|3end_HlyD_family_secretion_protein_108643..108793_NEGATIVE 332 676 632 149 98 NC_002950:PG0950|3end_glycine_cleavage_system_protein_H_1010321..1010471_POSITIVE 331 681 642 49 12 NC_002950:PG2158|3end_hypothetical_protein_2264473..2264623_POSITIVE 331 229 184 137 97 NC_002950:PG1497|3end_DNA-binding_protein,_histone-like_family_1574635..1574785_POSITIVE 331 219 173 131 86 NC_002950:PG1006|3end_hypothetical_protein_1063794..1063944_NEGATIVE 329 659 614 143 92 NC_002950:PG0377|3end_30S_ribosomal_protein_S2_407845..407995_POSITIVE 329 746 701 128 82 NC_002950:PG0068|3end_hypothetical_protein_82079..82229_POSITIVE 328 658 612 130 63 NC_002950:PG1174|3end_thioesterase_family_protein_1253210..1253360_NEGATIVE 327 657 611 132 78 NC_002950:PG1731|3end_3-dehydroquinate_dehydratase_1819678..1819828_NEGATIVE