Origin IGS: ttacgatctatatatttatcaaaaacgatttaaatataaaatgaaaacgatttgtatacaaattgaaaacgctttatatacaaatcgttgtacggcttgttttaagtggaatttcgatctatggcagttccttttccctccacttttaccttgcttttctcctctctacagatacttatttggaatcgttccaaactcgtcttcgttgttgaaaacttttttggcgcatgatttttgagcagattattattttcgtggtctcccttttttcacagggaatagctttcagatttagtaatgttgttgcaacgcacagctcggagacttcttcttttattcgtaatcgtgttaattgcttccgcctttagacctttagcttaccctccatctctccctgccttcggataaccttttatttgctttatctttgcgggcatatcaatttgtccgga .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 tccggacaaattgatatgcccgcaaagataaagcaaataaaaggttatccgaaggcagggagagatggagggtaagctaaaggtctaaaggcggaagcaattaacacgattacgaataaaagaagaagtctccgagctgtgcgttgcaacaacattactaaatctgaaagctattccctgtgaaaaaagggagaccacgaaaataataatctgctcaaaaatcatgcgccaaaaaagttttcaacaacgaagacgagtttggaacgattccaaataagtatctgtagagaggagaaaagcaaggtaaaagtggagggaaaaggaactgccatagatcgaaattccacttaaaacaagccgtacaacgatttgtatataaagcgttttcaatttgtatacaaatcgttttcattttatatttaaatcgtttttgataaatatatagatcgtaa Mask Tandem Repeat Region ================================================ ttacgatctatatatttatcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgttgtacggcttgttttaagtggaatttcgatctatggcagttccttttccctccacttttaccttgcttttctcctctctacagatacttatttggaatcgttccaaactcgtcttcgttgttgaaaacttttttggcgcatgatttttgagcagattattattttcgtggtctcccttttttcacagggaatagctttcagatttagtaatgttgttgcaacgcacagctcggagacttcttcttttattcgtaatcgtgttaattgcttccgcctttagacctttagcttaccctccatctctccctgccttcggataaccttttatttgctttatctttgcgggcatatcaatttgtccgga Find is-nt database================================================ Query_seq: PG1574:PG1576|PG1574:PG1576:hypothetical protein:L-aspartate oxidase:<-->:1652704..1653155 452 ttacgatctatatatttatcaaaaacgatttaaatataaaatgaaaacgatttgtatacaaattgaaaacgctttatatacaaatcgttgtacggcttgttttaagtggaatttcgatctatggcagttccttttccctccacttttaccttgcttttctcctctctacagatacttatttggaatcgttccaaactcgtcttcgttgttgaaaacttttttggcgcatgatttttgagcagattattattttcgtggtctcccttttttcacagggaatagctttcagatttagtaatgttgttgcaacgcacagctcggagacttcttcttttattcgtaatcgtgttaattgcttccgcctttagacctttagcttaccctccatctctccctgccttcggataaccttttatttgctttatctttgcgggcatatcaatttgtccgga Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PG1574:PG1576|PG1574:PG1576:hypothetical protein:L-aspartate oxidase:<-->:1652704..1653155 452 ttacgatctatatatttatcaaaaacgatttaaatataaaatgaaaacgatttgtatacaaattgaaaacgctttatatacaaatcgttgtacggcttgttttaagtggaatttcgatctatggcagttccttttccctccacttttaccttgcttttctcctctctacagatacttatttggaatcgttccaaactcgtcttcgttgttgaaaacttttttggcgcatgatttttgagcagattattattttcgtggtctcccttttttcacagggaatagctttcagatttagtaatgttgttgcaacgcacagctcggagacttcttcttttattcgtaatcgtgttaattgcttccgcctttagacctttagcttaccctccatctctccctgccttcggataaccttttatttgctttatctttgcgggcatatcaatttgtccgga Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PG1574:PG1576|PG1574:PG1576:hypothetical protein:L-aspartate oxidase:<-->:1652704..1653155 452 ttacgatctatatatttatcaaaaacgatttaaatataaaatgaaaacgatttgtatacaaattgaaaacgctttatatacaaatcgttgtacggcttgttttaagtggaatttcgatctatggcagttccttttccctccacttttaccttgcttttctcctctctacagatacttatttggaatcgttccaaactcgtcttcgttgttgaaaacttttttggcgcatgatttttgagcagattattattttcgtggtctcccttttttcacagggaatagctttcagatttagtaatgttgttgcaacgcacagctcggagacttcttcttttattcgtaatcgtgttaattgcttccgcctttagacctttagcttaccctccatctctccctgccttcggataaccttttatttgctttatctttgcgggcatatcaatttgtccgga Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 ttacgatctatatatttatcaaaaacgatttaaatataaaatgaaaacgatttgtatacaaattgaaaacgctttatatacaaatcgttgtacggcttgttttaagtggaatttcgatctatggcagttccttttccctccacttttaccttgcttttctcctctctacagatacttatttggaatcgttccaaactcgtcttcgttgttgaaaacttttttggcgcatgatttttgagcagattattattttcgtggtctcccttttttcacagggaatagctttcagatttagtaatgttgttgcaacgcacagctcggagacttcttcttttattcgtaatcgtgttaattgcttccgcctttagacctttagcttaccctccatctctccctgccttcggataaccttttatttgctttatctttgcgggcatatcaatttgtccgga Predict ORF larger than 30AA ================================================ Protein_Len: 49 Strand: + Start: 63 End: 209 .............................................................. M K T L Y I Q I V V R L V L S G I S I Y G S S F S L H F Y L A F L L S T D T Y L E S F Q T R L R C ................................................................................................................................................................................................................................................... Protein_Len: 41 Strand: + Start: 106 End: 228 ......................................................................................................... M E F R S M A V P F P S T F T L L F S S L Q I L I W N R S K L V F V V E N F F G A ................................................................................................................................................................................................................................ Protein_Len: 60 Strand: + Start: 14 End: 235 ............. M Y Q K R F K Y K M K T I C I Q I E N A L Y T N R C T A C F K W N F D L W Q F L F P P L L P C F S P L Y R Y L F G I V P ......................................................................................................................................................................................................................... Protein_Len: 46 Strand: + Start: 228 End: 365 ................................................................................................................................................................................................................................... M I F E Q I I I F V V S L F S Q G I A F R F S N V V A T H S S E T S S F I R N R V N C F R L ....................................................................................... Protein_Len: 36 Strand: + Start: 298 End: 405 ......................................................................................................................................................................................................................................................................................................... M L L Q R T A R R L L L L F V I V L I A S A F R P L A Y P P S L P A F G ............................................... Protein_Len: 53 Strand: - Start: 179 End: 337 .................................................................................................................................................................................. K S D N W V R R R Q Q F S K Q R M I K S C I I I K T T E R K E C P I A K L N L L T T A V C L E S V E E K M ................................................................................................................... Protein_Len: 46 Strand: - Start: 105 End: 242 ........................................................................................................ T S N R D I A T G K G E V K V K S K E E R C I S I Q F R E L S T K T T S F K K P A H N K L M .................................................................................................................................................................................................................. ttacgatctatatatttatcaaaaacgatttaaatataaaatgaaaacgatttgtatacaaattgaaaacgctttatatacaaatcgttgtacggcttgttttaagtggaatttcgatctatggcagttccttttccctccacttttaccttgcttttctcctctctacagatacttatttggaatcgttccaaactcgtcttcgttgttgaaaacttttttggcgcatgatttttgagcagattattattttcgtggtctcccttttttcacagggaatagctttcagatttagtaatgttgttgcaacgcacagctcggagacttcttcttttattcgtaatcgtgttaattgcttccgcctttagacctttagcttaccctccatctctccctgccttcggataaccttttatttgctttatctttgcgggcatatcaatttgtccgga Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: - Score: 81 Start: 33 End: 62 ................................TTTGTATACAAATCGTTTTCATTTTATATT...................................................................................................................................................................................................................................................................................................................................................................................................... Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ ttacgatctatatatttatcaaaaacgatttaaatataaaatgaaaacgatttgtatacaaattgaaaacgctttatatacaaatcgttgtacggcttgttttaagtggaatttcgatctatggcagttccttttccctccacttttaccttgcttttctcctctctacagatacttatttggaatcgttccaaactcgtcttcgttgttgaaaacttttttggcgcatgatttttgagcagattattattttcgtggtctcccttttttcacagggaatagctttcagatttagtaatgttgttgcaacgcacagctcggagacttcttcttttattcgtaatcgtgttaattgcttccgcctttagacctttagcttaccctccatctctccctgccttcggataaccttttatttgctttatctttgcgggcatatcaatttgtccgga Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 73 HP_score: -8.8 Tail_Score: -3.35349 Start: 48 End: 87 Full_Region: AATATAAAATGAAAA CGATTTGTATACAAATTG AAAA CGCTTTATATACAAATCG TTGTACGGCTTGTTT ...............................................CGATTTGTATACAAATTGAAAACGCTTTATATACAAATCG............................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: - Conf: 100 HP_score: -8.8 Tail_Score: -4.76874 Start: 48 End: 87 Full_Region: aaacaagccgtacaa cgatttgtatataaagcg tttt caatttgtatacaaatcg ttttcattttatatt ...............................................cgatttgtatataaagcgttttcaatttgtatacaaatcg............................................................................................................................................................................................................................................................................................................................................................................. Find igs database================================================ Query_seq: PG1574:PG1576|PG1574:PG1576:hypothetical protein:L-aspartate oxidase:<-->:1652704..1653155 452 ttacgatctatatatttatcaaaaacgatttaaatataaaatgaaaacgatttgtatacaaattgaaaacgctttatatacaaatcgttgtacggcttgttttaagtggaatttcgatctatggcagttccttttccctccacttttaccttgcttttctcctctctacagatacttatttggaatcgttccaaactcgtcttcgttgttgaaaacttttttggcgcatgatttttgagcagattattattttcgtggtctcccttttttcacagggaatagctttcagatttagtaatgttgttgcaacgcacagctcggagacttcttcttttattcgtaatcgtgttaattgcttccgcctttagacctttagcttaccctccatctctccctgccttcggataaccttttatttgctttatctttgcgggcatatcaatttgtccgga Intra-Species Hit: Count: 8 Min: 1 Max: 452 Len: 452 Subject: NC_002950_PG1574_PG1576|hypothetical protein:L-aspartate oxidase|NEGATIVE:POSITIVE|[1652704,1653155]|452 HSP 1 e-value: 0.0 bit: 896.0 Len: 452 Query Start:1 Query End:452 Subject Strand: POSITIVE Subject Start: 1 Subject End: 452 ttacgatctatatatttatcaaaaacgatttaaatataaaatgaaaacgatttgtatacaaattgaaaacgctttatatacaaatcgttgtacggcttgttttaagtggaatttcgatctatggcagttccttttccctccacttttaccttgcttttctcctctctacagatacttatttggaatcgttccaaactcgtcttcgttgttgaaaacttttttggcgcatgatttttgagcagattattattttcgtggtctcccttttttcacagggaatagctttcagatttagtaatgttgttgcaacgcacagctcggagacttcttcttttattcgtaatcgtgttaattgcttccgcctttagacctttagcttaccctccatctctccctgccttcggataaccttttatttgctttatctttgcgggcatatcaatttgtccgga ttacgatctatatatttatcaaaaacgatttaaatataaaatgaaaacgatttgtatacaaattgaaaacgctttatatacaaatcgttgtacggcttgttttaagtggaatttcgatctatggcagttccttttccctccacttttaccttgcttttctcctctctacagatacttatttggaatcgttccaaactcgtcttcgttgttgaaaacttttttggcgcatgatttttgagcagattattattttcgtggtctcccttttttcacagggaatagctttcagatttagtaatgttgttgcaacgcacagctcggagacttcttcttttattcgtaatcgtgttaattgcttccgcctttagacctttagcttaccctccatctctccctgccttcggataaccttttatttgctttatctttgcgggcatatcaatttgtccgga Subject: NC_002950_PG0369_PG0371|phosphopantetheine adenylyltransferase:hypothetical protein|POSITIVE:POSITIVE|[403812,404182]|371 HSP 1 e-value: 2.0E-97 bit: 357.0 Len: 239 Query Start:1 Query End:239 Subject Strand: NEGATIVE Subject Start: 130 Subject End: 366 ttacgatctatatatttatcaaaaacgatttaaatataaaatgaaaacgatttgtatacaaattgaaaacgctttatatacaaatcgttgtacggcttgttttaagtggaatttcgatctatggcagttccttttccctccacttttaccttgcttttctcctctctacagatacttatttggaatcgttccaaactcgtcttcgttgttgaaaacttttttggcgcatgatttttgag..................................................................................................................................................................................................................... ttacgatctatatat--atcaaaaacgatttatatataaaacggaaacgatttgtatacaaattgaaaacactttatatacagatcgttgtacggcttgttttaagtggaatttcgatctatggcagttccttttccctgcacttttacctcgcttttctcctctctacagatgcttatttggaatcattccaaactcatcttcgttgttgaaaacttttttggcgtatgattattgag..................................................................................................................................................................................................................... Subject: NC_002950_PG0404_PG0408|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[440197,441041]|845 HSP 1 e-value: 2.0E-17 bit: 91.7 Len: 50 Query Start:175 Query End:224 Subject Strand: POSITIVE Subject Start: 628 Subject End: 677 ..............................................................................................................................................................................cttatttggaatcgttccaaactcgtcttcgttgttgaaaacttttttgg.................................................................................................................................................................................................................................... ..............................................................................................................................................................................cttatttggaatcattccaaactcgtcttcgttgttgaaaacttttttgg.................................................................................................................................................................................................................................... HSP 2 e-value: 8.0E-17 bit: 89.7 Len: 89 Query Start:1 Query End:89 Subject Strand: POSITIVE Subject Start: 454 Subject End: 542 ttacgatctatatatttatcaaaaacgatttaaatataaaatgaaaacgatttgtatacaaattgaaaacgctttatatacaaatcgtt........................................................................................................................................................................................................................................................................................................................................................................... ttacgatctatatatttattgaaaacgatttatatataaaacgaaaaccatttatatataaattgaaagtcatttatatacaaatcgtt........................................................................................................................................................................................................................................................................................................................................................................... Subject: NC_002950_PG1889_PG1890|hypothetical protein:lipoprotein, putative|POSITIVE:POSITIVE|[1987151,1987704]|554 HSP 1 e-value: 3.0E-16 bit: 87.7 Len: 88 Query Start:1 Query End:88 Subject Strand: POSITIVE Subject Start: 151 Subject End: 238 ttacgatctatatatttatcaaaaacgatttaaatataaaatgaaaacgatttgtatacaaattgaaaacgctttatatacaaatcgt............................................................................................................................................................................................................................................................................................................................................................................ ttacgatatatatatttattgaaaacgatttatatataaattgaaaacgatctatatataaattgaaaatggtttatatacagatcgt............................................................................................................................................................................................................................................................................................................................................................................ HSP 2 e-value: 4.0E-6 bit: 54.0 Len: 51 Query Start:175 Query End:225 Subject Strand: POSITIVE Subject Start: 326 Subject End: 376 ..............................................................................................................................................................................cttatttggaatcgttccaaactcgtcttcgttgttgaaaacttttttggc................................................................................................................................................................................................................................... ..............................................................................................................................................................................cttatttagaatgattctaagctcgtcttcattgttgaaaacttttttggc................................................................................................................................................................................................................................... Subject: NC_002950_PG1743_PG1745|2-dehydro-3-deoxyphosphooctonate aldolase:phosphoribulokinase family protein|NEGATIVE:NEGATIVE|[1828439,1829524]|1086 HSP 1 e-value: 1.0E-15 bit: 85.7 Len: 55 Query Start:175 Query End:229 Subject Strand: NEGATIVE Subject Start: 273 Subject End: 327 ..............................................................................................................................................................................cttatttggaatcgttccaaactcgtcttcgttgttgaaaacttttttggcgcat............................................................................................................................................................................................................................... ..............................................................................................................................................................................cttatttggaatcattccaaacacttcttcgttgttgaaaacttttttggcgcat............................................................................................................................................................................................................................... HSP 2 e-value: 1.0E-6 bit: 56.0 Len: 60 Query Start:4 Query End:63 Subject Strand: NEGATIVE Subject Start: 439 Subject End: 498 ...cgatctatatatttatcaaaaacgatttaaatataaaatgaaaacgatttgtatacaaat..................................................................................................................................................................................................................................................................................................................................................................................................... ...cgatctatatatttattgaaaatcatttatatacaaaatgaaaacgatttatatataaat..................................................................................................................................................................................................................................................................................................................................................................................................... Subject: NC_002950_PG0340_PG0343|hypothetical protein:methionine gamma-lyase|POSITIVE:NEGATIVE|[376497,377270]|774 HSP 1 e-value: 8.0E-14 bit: 79.8 Len: 48 Query Start:175 Query End:222 Subject Strand: POSITIVE Subject Start: 582 Subject End: 629 ..............................................................................................................................................................................cttatttggaatcgttccaaactcgtcttcgttgttgaaaactttttt...................................................................................................................................................................................................................................... ..............................................................................................................................................................................cttatttggaatgattccaaactcgtcttcgttgttgaaaactttttt...................................................................................................................................................................................................................................... HSP 2 e-value: 3.0E-13 bit: 77.8 Len: 87 Query Start:1 Query End:87 Subject Strand: POSITIVE Subject Start: 386 Subject End: 472 ttacgatctatatatttatcaaaaacgatttaaatataaaatgaaaacgatttgtatacaaattgaaaacgctttatatacaaatcg............................................................................................................................................................................................................................................................................................................................................................................. ttacaatctatatatttatcgcaatcgatttatatataaattaaaaatgatttatatacaaaatgaaaacgatatatatacaaatcg............................................................................................................................................................................................................................................................................................................................................................................. HSP 3 e-value: 5.0E-12 bit: 73.8 Len: 85 Query Start:4 Query End:88 Subject Strand: POSITIVE Subject Start: 411 Subject End: 495 ...cgatctatatatttatcaaaaacgatttaaatataaaatgaaaacgatttgtatacaaattgaaaacgctttatatacaaatcgt............................................................................................................................................................................................................................................................................................................................................................................ ...cgatttatatataaattaaaaatgatttatatacaaaatgaaaacgatatatatacaaatcgaaaaagctttatatataaatcgt............................................................................................................................................................................................................................................................................................................................................................................ Subject: NC_002950_PG2083_PG2085|hypothetical protein:tryptophanyl-tRNA synthetase|NEGATIVE:POSITIVE|[2184598,2185671]|1074 HSP 1 e-value: 1.0E-12 bit: 75.8 Len: 82 Query Start:6 Query End:87 Subject Strand: POSITIVE Subject Start: 523 Subject End: 604 .....atctatatatttatcaaaaacgatttaaatataaaatgaaaacgatttgtatacaaattgaaaacgctttatatacaaatcg............................................................................................................................................................................................................................................................................................................................................................................. .....atctatatattaatcaaaagcgatttatatataaattagaaacgatctatatacaaatcgaaaacggtttatatataaatcg............................................................................................................................................................................................................................................................................................................................................................................. HSP 2 e-value: 7.0E-11 bit: 69.9 Len: 55 Query Start:171 Query End:225 Subject Strand: POSITIVE Subject Start: 688 Subject End: 742 ..........................................................................................................................................................................gatacttatttggaatcgttccaaactcgtcttcgttgttgaaaacttttttggc................................................................................................................................................................................................................................... ..........................................................................................................................................................................gatacttatttggaatgattctaaactcagcttcgttgttgaaaacttttttggc................................................................................................................................................................................................................................... Subject: NC_002950_PG1119_PG1121|flavodoxin, putative:asparaginyl-tRNA synthetase|POSITIVE:NEGATIVE|[1195544,1196235]|692 HSP 1 e-value: 3.0E-10 bit: 67.9 Len: 82 Query Start:9 Query End:90 Subject Strand: NEGATIVE Subject Start: 292 Subject End: 373 ........tatatatttatcaaaaacgatttaaatataaaatgaaaacgatttgtatacaaattgaaaacgctttatatacaaatcgttg.......................................................................................................................................................................................................................................................................................................................................................................... ........tatatatttattgaaaacgatttgtatataaatcgaaaacgatctgtatataaattaaaaatgctttatatatagatcgttg.......................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 3.0E-7 bit: 58.0 Len: 49 Query Start:176 Query End:224 Subject Strand: NEGATIVE Subject Start: 158 Subject End: 206 ...............................................................................................................................................................................ttatttggaatcgttccaaactcgtcttcgttgttgaaaacttttttgg.................................................................................................................................................................................................................................... ...............................................................................................................................................................................ttatttagaatgattccaaacttgtcttcgttgttgaaaagttttttgg.................................................................................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UUACGAUCUAUAUAUUUAUCAAAAACGAUUUAAAUAUAAAAUGAAAACGAUUUGUAUACAAAUUGAAAACGCUUUAUAUACAAAUCGUUGUACGGCUUGUUUUAAGUGGAAUUUCGAUCUAUGGCAGUUCCUUUUCCCUCCACUUUUACCUUGCUUUUCUCCUCUCUACAGAUACUUAUUUGGAAUCGUUCCAAACUCGUCUUCGUUGUUGAAAACUUUUUUGGCGCAUGAUUUUUGAGCAGAUUAUUAUUUUCGUGGUCUCCCUUUUUUCACAGGGAAUAGCUUUCAGAUUUAGUAAUGUUGUUGCAACGCACAGCUCGGAGACUUCUUCUUUUAUUCGUAAUCGUGUUAAUUGCUUCCGCCUUUAGACCUUUAGCUUACCCUCCAUCUCUCCCUGCCUUCGGAUAACCUUUUAUUUGCUUUAUCUUUGCGGGCAUAUCAAUUUGUCCGGA ..((((((((.(((..((((...((((((((..(((((((.((....(((((((....)))))))....)).)))))))..))))))))....(((..((...(((((((.....((.....((.....))...))..)))))))..))...)))...............))))..))).))).))))).(((((...((.((((....)))).))...))))).(((.(((....((((((((.......((((.(((.(((((........)))))..((((....((((.(((((.(((((.((...)))))))..((((....))))..)))))...))))...((((..((....))..))))......))))..................)))..)))).........)))))))).)))..)))(((((........)))))... (-87.09) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UCCGGACAAAUUGAUAUGCCCGCAAAGAUAAAGCAAAUAAAAGGUUAUCCGAAGGCAGGGAGAGAUGGAGGGUAAGCUAAAGGUCUAAAGGCGGAAGCAAUUAACACGAUUACGAAUAAAAGAAGAAGUCUCCGAGCUGUGCGUUGCAACAACAUUACUAAAUCUGAAAGCUAUUCCCUGUGAAAAAAGGGAGACCACGAAAAUAAUAAUCUGCUCAAAAAUCAUGCGCCAAAAAAGUUUUCAACAACGAAGACGAGUUUGGAACGAUUCCAAAUAAGUAUCUGUAGAGAGGAGAAAAGCAAGGUAAAAGUGGAGGGAAAAGGAACUGCCAUAGAUCGAAAUUCCACUUAAAACAAGCCGUACAACGAUUUGUAUAUAAAGCGUUUUCAAUUUGUAUACAAAUCGUUUUCAUUUUAUAUUUAAAUCGUUUUUGAUAAAUAUAUAGAUCGUAA (((...((..((....((((.((.........))........((....))...))))....))..))..))).........((((((...((....)).(((((.((((((..(((((.((((.(((.....((.(((.(((.((((..........................((((((........))))))................(((.(((.......((((.........((((((......))))))..(((((((.....)))))))..)))).......))).)))...)))).))).((((((((.((...((.....)).....))....))))))))......)))))...(((((((((((((((((..(....)..)))))))))))))))))))).)))).))))).))))))..))))).......)))))).... (-99.94) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 890 140 91 231 182 NC_002950:PG1574|5end_hypothetical_protein_1652613..1652843_NEGATIVE 873 230 181 127 78 NC_002950:PG0609|5end_hypothetical_protein_663183..663413_POSITIVE 815 130 84 224 178 NC_002950:PG0371|5end_hypothetical_protein_404043..404273_POSITIVE 655 229 181 91 41 NC_002950:PG1357|5end_hypothetical_protein_1436458..1436688_NEGATIVE 636 229 181 72 23 NC_002950:PG0773|5end_hypothetical_protein_825131..825361_POSITIVE 598 227 181 57 11 NC_002950:PG0995|5end_hypothetical_protein_1055585..1055815_NEGATIVE 405 227 198 30 1 NC_002950:PG1167|5end_hypothetical_protein_1248427..1248657_POSITIVE 364 403 361 67 12 NC_002950:PG0930|5end_hypothetical_protein_987542..987772_NEGATIVE 350 335 295 77 41 NC_002950:PG0625|5end_GTP_cyclohydrolase_I_678588..678818_POSITIVE 341 399 353 64 12 NC_002950:PG1017|5end_pyruvate_phosphate_dikinase_1076138..1076368_POSITIVE 341 346 301 192 150 NC_002950:PG0976|5end_phosphoribosylaminoimidazole-succinocarboxamide_synthase_1038326..1038556_POSITIVE 341 399 355 47 7 NC_002950:PG0362|5end_hypothetical_protein_395301..395531_POSITIVE 333 125 84 198 143 NC_002950:PG1786|5end_hypothetical_protein_1874358..1874588_POSITIVE 325 89 41 119 71 NC_002950:PG1222|5end_hypothetical_protein_1299392..1299622_NEGATIVE 325 160 112 120 72 NC_002950:PG0399|5end_lipoprotein,_putative_436237..436467_NEGATIVE 315 437 392 113 57 NC_002950:PG0268|5end_tRNA_(5-methylaminomethyl-2-thiouridylate)-methyltransferase_300898..301128_POSITIVE 312 264 221 203 161 NC_002950:PG1546|5end_hypothetical_protein_1624087..1624317_POSITIVE 311 150 120 55 23 NC_002950:PG1551|5end_hmuY_protein_1628438..1628668_POSITIVE 311 138 93 59 7 NC_002950:PG0766|5end_polyribonucleotide_nucleotidyltransferase_818405..818635_NEGATIVE 310 399 353 58 14 NC_002950:PG1693|5end_HesA/MoeB/ThiF_family_protein_1777919..1778149_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 636 229 181 65 16 NC_002950:PG0772|3end_hypothetical_protein_825204..825354_POSITIVE 609 220 175 51 6 NC_002950:PG1868|3end_hypothetical_protein_1965098..1965248_NEGATIVE 574 160 111 151 100 NC_002950:PG0609|3end_hypothetical_protein_663355..663505_POSITIVE 558 211 175 151 115 NC_002950:PG1167|3end_hypothetical_protein_1248644..1248794_POSITIVE 500 87 44 44 1 NC_002950:PG0773|3end_hypothetical_protein_825348..825498_POSITIVE 479 205 161 151 106 NC_002950:PG0995|3end_hypothetical_protein_1055469..1055619_NEGATIVE 459 239 208 32 1 NC_002950:PG0608|3end_hypothetical_protein_663159..663309_POSITIVE 421 80 34 49 1 NC_002950:PG1357|3end_hypothetical_protein_1436327..1436477_NEGATIVE 391 240 200 39 1 NC_002950:PG0095|3end_DNA_mismatch_repair_protein_112088..112238_NEGATIVE 381 163 124 77 30 NC_002950:PG1449|3end_hypothetical_protein_1533582..1533732_NEGATIVE 381 163 124 77 30 NC_002950:PG0824|3end_hypothetical_protein_881930..882080_POSITIVE 350 335 295 73 37 NC_002950:PG0624|3end_hypothetical_protein_678664..678814_POSITIVE 341 346 301 142 100 NC_002950:PG0975|3end_PhoH_family_protein_1038356..1038506_POSITIVE 341 399 355 147 107 NC_002950:PG0361|3end_hypothetical_protein_395481..395631_POSITIVE 339 410 363 144 91 NC_002950:PG0443|3end_hemagglutinin-related_protein_483147..483297_POSITIVE 329 161 124 92 47 NC_002950:PG1196|3end_hypothetical_protein_1275359..1275509_POSITIVE 325 160 112 112 64 NC_002950:PG0400|3end_hypothetical_protein_436245..436395_NEGATIVE 323 404 367 134 95 NC_002950:PG2040|3end_DNA-binding_protein,_histone-like_family_2138398..2138548_NEGATIVE 318 435 392 70 17 NC_002950:PG1484|3end_hypothetical_protein_1559275..1559425_NEGATIVE 315 437 392 108 52 NC_002950:PG0267|3end_arginyl-tRNA_synthetase_300973..301123_POSITIVE