Origin IGS: atccattatttggtaatcttttgtttgtacaatgccacaaaagtagcatattatctccgtaattttttcggcaaaaaagcctaaaaagggtcttagactgtctaatagcaaagcaaatccaaatacatatcggaaaaacgagagaattcggatccattcgatctcatcgacatgttcgtgcccattgatgcaatccatgtcttttacatcccggagaaaaaaaatcgaaaagaaattaggaaaaggctgatctcgaaaaggacatcactttggatgtcagggcagaggcattcaaaacagcgttctataaattttatagtcgttgaatgagccgtcagtcatgtattcagtctctatcggaaaatctcttcatggtctcggacccacggatagagagcaaagaagtttatcctcttgactttttattcctgatcgttttcctctctacgctctcaggtgatacctctggtacgagattgaagattatgcagaggaatacgaagaagtgttgaaaagccggtacgaaacacttacgatcgtaggcgtacgatgctctcctgcacggtgcaggagaccggcgtaggcgtacggtgctcgttacaacatgctaattaccagtacattatggccaattaaggtgaaatgaaaataatcttggaagttttccctgttttgcgtcttcaaaattcatttttcccccttgtttgggaagatcaggactcatttcttataatagaaaggcacccatgattgtaatttccaatagtaagagcaacacagactacagaaaattccccgaagagaccggccccttcggcagggggctatcgtatttgaaaggttgtactccgtatccttggtctcttccttctacaattaggatctctaacacattaattcgtgtttattccggacggaacatcatcagacctatatttcaaatgcaattgccctgctttggatgtgatttatagggtatagaaagcggtaatatcggattttgagaccttttgcatgctatagacagcagagtaaaagagaataggattcatttatatgatgtaaaaaaggattggttttatgatgatattcttgtcttcggaaagacaaaaattcaaaaaccaatccttcttaatagagaaagagttgtaacggtcgaagtctttctcagacttcgtta .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 taacgaagtctgagaaagacttcgaccgttacaactctttctctattaagaaggattggtttttgaatttttgtctttccgaagacaagaatatcatcataaaaccaatccttttttacatcatataaatgaatcctattctcttttactctgctgtctatagcatgcaaaaggtctcaaaatccgatattaccgctttctataccctataaatcacatccaaagcagggcaattgcatttgaaatataggtctgatgatgttccgtccggaataaacacgaattaatgtgttagagatcctaattgtagaaggaagagaccaaggatacggagtacaacctttcaaatacgatagccccctgccgaaggggccggtctcttcggggaattttctgtagtctgtgttgctcttactattggaaattacaatcatgggtgcctttctattataagaaatgagtcctgatcttcccaaacaagggggaaaaatgaattttgaagacgcaaaacagggaaaacttccaagattattttcatttcaccttaattggccataatgtactggtaattagcatgttgtaacgagcaccgtacgcctacgccggtctcctgcaccgtgcaggagagcatcgtacgcctacgatcgtaagtgtttcgtaccggcttttcaacacttcttcgtattcctctgcataatcttcaatctcgtaccagaggtatcacctgagagcgtagagaggaaaacgatcaggaataaaaagtcaagaggataaacttctttgctctctatccgtgggtccgagaccatgaagagattttccgatagagactgaatacatgactgacggctcattcaacgactataaaatttatagaacgctgttttgaatgcctctgccctgacatccaaagtgatgtccttttcgagatcagccttttcctaatttcttttcgattttttttctccgggatgtaaaagacatggattgcatcaatgggcacgaacatgtcgatgagatcgaatggatccgaattctctcgtttttccgatatgtatttggatttgctttgctattagacagtctaagaccctttttaggcttttttgccgaaaaaattacggagataatatgctacttttgtggcattgtacaaacaaaagattaccaaataatggat Mask Tandem Repeat Region ================================================ atccattatttggtaatcttttgtttgtacaatgccacaaaagtagcatattatctccgtaattttttcggcaaaaaagcctaaaaagggtcttagactgtctaatagcaaagcaaatccaaatacatatcggaaaaacgagagaattcggatccattcgatctcatcgacatgttcgtgcccattgatgcaatccatgtcttttacatcccggagaaaaaaaatcgaaaagaaattaggaaaaggctgatctcgaaaaggacatcactttggatgtcagggcagaggcattcaaaacagcgttctataaattttatagtcgttgaatgagccgtcagtcatgtattcagtctctatcggaaaatctcttcatggtctcggacccacggatagagagcaaagaagtttatcctcttgactttttattcctgatcgttttcctctctacgctctcaggtgatacctctggtacgagattgaagattatgcagaggaatacgaagaagtgttgaaaagccggtacgaaacacttacgatcgtaggcgtacgatgctctcctgcacggtgcaggagaccggcgtaggcgtacggtgctcgttacaacatgctaattaccagtacattatggccaattaaggtgaaatgaaaataatcttggaagttttccctgttttgcgtcttcaaaattcatttttcccccttgtttgggaagatcaggactcatttcttataatagaaaggcacccatgattgtaatttccaatagtaagagcaacacagactacagaaaattccccgaagagaccggccccttcggcagggggctatcgtatttgaaaggttgtactccgtatccttggtctcttccttctacaattaggatctctaacacattaattcgtgtttattccggacggaacatcatcagacctatatttcaaatgcaattgccctgctttggatgtgatttatagggtatagaaagcggtaatatcggattttgagaccttttgcatgctatagacagcagagtaaaagagaataggattcatttatatgatgtaaaaaaggattggttttatgatgatattcttgtcttcggaaagacaaaaattcaaaaaccaatccttcttaatagagaaagagttgtaacggtcgaagtctttctcagacttcgtta Find is-nt database================================================ Query_seq: PG1566:PG1570|PG1566:PG1570:glutamyl-tRNA synthetase:rhodanese-like domain protein:<-<-:1647492..1648671 1180 atccattatttggtaatcttttgtttgtacaatgccacaaaagtagcatattatctccgtaattttttcggcaaaaaagcctaaaaagggtcttagactgtctaatagcaaagcaaatccaaatacatatcggaaaaacgagagaattcggatccattcgatctcatcgacatgttcgtgcccattgatgcaatccatgtcttttacatcccggagaaaaaaaatcgaaaagaaattaggaaaaggctgatctcgaaaaggacatcactttggatgtcagggcagaggcattcaaaacagcgttctataaattttatagtcgttgaatgagccgtcagtcatgtattcagtctctatcggaaaatctcttcatggtctcggacccacggatagagagcaaagaagtttatcctcttgactttttattcctgatcgttttcctctctacgctctcaggtgatacctctggtacgagattgaagattatgcagaggaatacgaagaagtgttgaaaagccggtacgaaacacttacgatcgtaggcgtacgatgctctcctgcacggtgcaggagaccggcgtaggcgtacggtgctcgttacaacatgctaattaccagtacattatggccaattaaggtgaaatgaaaataatcttggaagttttccctgttttgcgtcttcaaaattcatttttcccccttgtttgggaagatcaggactcatttcttataatagaaaggcacccatgattgtaatttccaatagtaagagcaacacagactacagaaaattccccgaagagaccggccccttcggcagggggctatcgtatttgaaaggttgtactccgtatccttggtctcttccttctacaattaggatctctaacacattaattcgtgtttattccggacggaacatcatcagacctatatttcaaatgcaattgccctgctttggatgtgatttatagggtatagaaagcggtaatatcggattttgagaccttttgcatgctatagacagcagagtaaaagagaataggattcatttatatgatgtaaaaaaggattggttttatgatgatattcttgtcttcggaaagacaaaaattcaaaaaccaatccttcttaatagagaaagagttgtaacggtcgaagtctttctcagacttcgtta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 1 Min: 366 Max: 516 Len: 151 Subject: IS|ISPg2 HSP 1 e-value: 3.0E-33 bit: 143.0 Len: 151 Query Start:366 Query End:516 Subject Strand: POSITIVE Subject Start: 88 Subject End: 239 .............................................................................................................................................................................................................................................................................................................................................................................ctcttcatggtctcggacccacggatagagagcaaagaagtttatcctcttgactttttattcctgatcgttttcctctctacgctctcaggtgatacctc-tggtacgagattgaagattatgcagaggaatacgaagaagtgttgaaaag........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ .............................................................................................................................................................................................................................................................................................................................................................................ctctgcatggttccggacccacggatagagcgtaaaaaaatttatcctcttgattttttactgctgatcgttttcctctcaacactctcaggcaatacctcttggtatgagattgaagattatgccgaggaatacgaagaagaattgaaaag........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Find is-aa database================================================ Query_seq: PG1566:PG1570|PG1566:PG1570:glutamyl-tRNA synthetase:rhodanese-like domain protein:<-<-:1647492..1648671 1180 atccattatttggtaatcttttgtttgtacaatgccacaaaagtagcatattatctccgtaattttttcggcaaaaaagcctaaaaagggtcttagactgtctaatagcaaagcaaatccaaatacatatcggaaaaacgagagaattcggatccattcgatctcatcgacatgttcgtgcccattgatgcaatccatgtcttttacatcccggagaaaaaaaatcgaaaagaaattaggaaaaggctgatctcgaaaaggacatcactttggatgtcagggcagaggcattcaaaacagcgttctataaattttatagtcgttgaatgagccgtcagtcatgtattcagtctctatcggaaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccggtacgaaacacttacgatcgtaggcgtacgatgctctcctgcacggtgcaggagaccggcgtaggcgtacggtgctcgttacaacatgctaattaccagtacattatggccaattaaggtgaaatgaaaataatcttggaagttttccctgttttgcgtcttcaaaattcatttttcccccttgtttgggaagatcaggactcatttcttataatagaaaggcacccatgattgtaatttccaatagtaagagcaacacagactacagaaaattccccgaagagaccggccccttcggcagggggctatcgtatttgaaaggttgtactccgtatccttggtctcttccttctacaattaggatctctaacacattaattcgtgtttattccggacggaacatcatcagacctatatttcaaatgcaattgccctgctttggatgtgatttatagggtatagaaagcggtaatatcggattttgagaccttttgcatgctatagacagcagagtaaaagagaataggattcatttatatgatgtaaaaaaggattggttttatgatgatattcttgtcttcggaaagacaaaaattcaaaaaccaatccttcttaatagagaaagagttgtaacggtcgaagtctttctcagacttcgtta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PG1566:PG1570|PG1566:PG1570:glutamyl-tRNA synthetase:rhodanese-like domain protein:<-<-:1647492..1648671 1180 atccattatttggtaatcttttgtttgtacaatgccacaaaagtagcatattatctccgtaattttttcggcaaaaaagcctaaaaagggtcttagactgtctaatagcaaagcaaatccaaatacatatcggaaaaacgagagaattcggatccattcgatctcatcgacatgttcgtgcccattgatgcaatccatgtcttttacatcccggagaaaaaaaatcgaaaagaaattaggaaaaggctgatctcgaaaaggacatcactttggatgtcagggcagaggcattcaaaacagcgttctataaattttatagtcgttgaatgagccgtcagtcatgtattcagtctctatcggaaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccggtacgaaacacttacgatcgtaggcgtacgatgctctcctgcacggtgcaggagaccggcgtaggcgtacggtgctcgttacaacatgctaattaccagtacattatggccaattaaggtgaaatgaaaataatcttggaagttttccctgttttgcgtcttcaaaattcatttttcccccttgtttgggaagatcaggactcatttcttataatagaaaggcacccatgattgtaatttccaatagtaagagcaacacagactacagaaaattccccgaagagaccggccccttcggcagggggctatcgtatttgaaaggttgtactccgtatccttggtctcttccttctacaattaggatctctaacacattaattcgtgtttattccggacggaacatcatcagacctatatttcaaatgcaattgccctgctttggatgtgatttatagggtatagaaagcggtaatatcggattttgagaccttttgcatgctatagacagcagagtaaaagagaataggattcatttatatgatgtaaaaaaggattggttttatgatgatattcttgtcttcggaaagacaaaaattcaaaaaccaatccttcttaatagagaaagagttgtaacggtcgaagtctttctcagacttcgtta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 atccattatttggtaatcttttgtttgtacaatgccacaaaagtagcatattatctccgtaattttttcggcaaaaaagcctaaaaagggtcttagactgtctaatagcaaagcaaatccaaatacatatcggaaaaacgagagaattcggatccattcgatctcatcgacatgttcgtgcccattgatgcaatccatgtcttttacatcccggagaaaaaaaatcgaaaagaaattaggaaaaggctgatctcgaaaaggacatcactttggatgtcagggcagaggcattcaaaacagcgttctataaattttatagtcgttgaatgagccgtcagtcatgtattcagtctctatcggaaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccggtacgaaacacttacgatcgtaggcgtacgatgctctcctgcacggtgcaggagaccggcgtaggcgtacggtgctcgttacaacatgctaattaccagtacattatggccaattaaggtgaaatgaaaataatcttggaagttttccctgttttgcgtcttcaaaattcatttttcccccttgtttgggaagatcaggactcatttcttataatagaaaggcacccatgattgtaatttccaatagtaagagcaacacagactacagaaaattccccgaagagaccggccccttcggcagggggctatcgtatttgaaaggttgtactccgtatccttggtctcttccttctacaattaggatctctaacacattaattcgtgtttattccggacggaacatcatcagacctatatttcaaatgcaattgccctgctttggatgtgatttatagggtatagaaagcggtaatatcggattttgagaccttttgcatgctatagacagcagagtaaaagagaataggattcatttatatgatgtaaaaaaggattggttttatgatgatattcttgtcttcggaaagacaaaaattcaaaaaccaatccttcttaatagagaaagagttgtaacggtcgaagtctttctcagacttcgtta Predict ORF larger than 30AA ================================================ Protein_Len: 60 Strand: + Start: 50 End: 247 ................................................. M I S V I F S A K K P K K G L R L S N S K A N P N T Y R K N E R I R I H S I S S T C S C P L M Q S M S F T S R R K K I E ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 127 End: 327 .............................................................................................................................. M S E K R E N S D P F D L I D M F V P I D A I H V F Y I P E K K N R K E I R K R L I S K R T S L W M S G Q R H S K Q R S ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 31 Strand: + Start: 323 End: 415 .................................................................................................................................................................................................................................................................................................................................. M N E P S V M Y S V S I G K S L H G L G P T D R E Q R S L S S ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 60 Strand: + Start: 327 End: 509 ...................................................................................................................................................................................................................................................................................................................................... M S R Q S C I Q S L S E N L F M V S D P R I E S K E V Y P L D F L F L I V F L S T L S G D T S G T R L K I M Q R N T K K ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 35 Strand: + Start: 476 End: 580 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M E D Y A E E Y E E V L K S R Y E T L T I V G V R C S P A R C R R P A ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 46 Strand: + Start: 496 End: 633 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M R R S V E K P V R N T Y D R R R T M L S C T V Q E T G V G V R C S L Q H A N Y Q Y I M A N ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 35 Strand: + Start: 643 End: 747 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M K I I L E V F P V L R L Q N S F F P L V W E D Q D S F L I I E R H P ................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 60 Strand: + Start: 690 End: 971 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M F P P C L G R S G L I S Y N R K A P M I V I S N S K S N T D Y R K F P E E T G P F G R G L S Y L K G C T P Y P W S L P ................................................................................................................................................................................................................. Protein_Len: 56 Strand: + Start: 1011 End: 1178 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M H A I D S R V K E N R I H L Y D V K K D W F Y D D I L V F G K T K I Q K P I L L N R E R V V T V E V F L R L R .. Protein_Len: 35 Strand: - Start: 1021 End: 1125 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ L C C L L L S Y S E N I H H L F P N T K H H Y E Q R R F S L F E F V M ....................................................... Protein_Len: 36 Strand: - Start: 941 End: 1048 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ I C N G Q K P H S K Y P I S L P L I P N Q S R K C A I S L L T F S F L M .................................................................................................................................... Protein_Len: 38 Strand: - Start: 785 End: 898 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ L F N G S S V P G K P L P S D Y K F P Q V G Y G Q D R G E V I L I E L V N M .......................................................................................................................................................................................................................................................................................... Protein_Len: 35 Strand: - Start: 724 End: 828 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... K K Y Y F P V W S Q L K W Y Y S C C L S C F I G R L S R G R R C P A M ................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 33 Strand: - Start: 626 End: 724 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. P W N L H F S F L R P L K G Q K A D E F N M K G G Q K P L D P S M ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 44 Strand: - Start: 207 End: 338 .............................................................................................................................................................................................................. M G S F F F R F S I L F L S I E F L V D S Q I D P C L C E F C R E I F K I T T S H A T M .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 30 Strand: - Start: 105 End: 194 ........................................................................................................ Y C L L D L Y M D S F R S F E S G N S R M S M N T G M S A M .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 52 Strand: - Start: 2 End: 157 . G N N P L R K N T C H W L L L M N D G Y N K R C F L R F L T K S Q R I A F C I W I C I P F V L S N P D M ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 1 End: 225 C I I E T I K E A F F G L F P R L S D L L L A F G F V Y R F F S L I R I W E I E D V H E H G N I C D M D K V D R L F F M ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... atccattatttggtaatcttttgtttgtacaatgccacaaaagtagcatattatctccgtaattttttcggcaaaaaagcctaaaaagggtcttagactgtctaatagcaaagcaaatccaaatacatatcggaaaaacgagagaattcggatccattcgatctcatcgacatgttcgtgcccattgatgcaatccatgtcttttacatcccggagaaaaaaaatcgaaaagaaattaggaaaaggctgatctcgaaaaggacatcactttggatgtcagggcagaggcattcaaaacagcgttctataaattttatagtcgttgaatgagccgtcagtcatgtattcagtctctatcggaaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccggtacgaaacacttacgatcgtaggcgtacgatgctctcctgcacggtgcaggagaccggcgtaggcgtacggtgctcgttacaacatgctaattaccagtacattatggccaattaaggtgaaatgaaaataatcttggaagttttccctgttttgcgtcttcaaaattcatttttcccccttgtttgggaagatcaggactcatttcttataatagaaaggcacccatgattgtaatttccaatagtaagagcaacacagactacagaaaattccccgaagagaccggccccttcggcagggggctatcgtatttgaaaggttgtactccgtatccttggtctcttccttctacaattaggatctctaacacattaattcgtgtttattccggacggaacatcatcagacctatatttcaaatgcaattgccctgctttggatgtgatttatagggtatagaaagcggtaatatcggattttgagaccttttgcatgctatagacagcagagtaaaagagaataggattcatttatatgatgtaaaaaaggattggttttatgatgatattcttgtcttcggaaagacaaaaattcaaaaaccaatccttcttaatagagaaagagttgtaacggtcgaagtctttctcagacttcgtta Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ atccattatttggtaatcttttgtttgtacaatgccacaaaagtagcatattatctccgtaattttttcggcaaaaaagcctaaaaagggtcttagactgtctaatagcaaagcaaatccaaatacatatcggaaaaacgagagaattcggatccattcgatctcatcgacatgttcgtgcccattgatgcaatccatgtcttttacatcccggagaaaaaaaatcgaaaagaaattaggaaaaggctgatctcgaaaaggacatcactttggatgtcagggcagaggcattcaaaacagcgttctataaattttatagtcgttgaatgagccgtcagtcatgtattcagtctctatcggaaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccggtacgaaacacttacgatcgtaggcgtacgatgctctcctgcacggtgcaggagaccggcgtaggcgtacggtgctcgttacaacatgctaattaccagtacattatggccaattaaggtgaaatgaaaataatcttggaagttttccctgttttgcgtcttcaaaattcatttttcccccttgtttgggaagatcaggactcatttcttataatagaaaggcacccatgattgtaatttccaatagtaagagcaacacagactacagaaaattccccgaagagaccggccccttcggcagggggctatcgtatttgaaaggttgtactccgtatccttggtctcttccttctacaattaggatctctaacacattaattcgtgtttattccggacggaacatcatcagacctatatttcaaatgcaattgccctgctttggatgtgatttatagggtatagaaagcggtaatatcggattttgagaccttttgcatgctatagacagcagagtaaaagagaataggattcatttatatgatgtaaaaaaggattggttttatgatgatattcttgtcttcggaaagacaaaaattcaaaaaccaatccttcttaatagagaaagagttgtaacggtcgaagtctttctcagacttcgtta Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 70 HP_score: -3.6 Tail_Score: -5.00616 Start: 79 End: 98 Full_Region: ctttgctattagaca gtctaaga ccct ttttaggc ttttttgccgaaaaa ..............................................................................gtctaagaccctttttaggc.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 53 HP_score: -2.1 Tail_Score: -4.11216 Start: 260 End: 279 Full_Region: tgaatgcctctgccc tgacatc caaagt gatgtcc ttttcgagatcagcc ...................................................................................................................................................................................................................................................................tgacatccaaagtgatgtcc..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 53 HP_score: -5.6 Tail_Score: -3.06515 Start: 261 End: 278 Full_Region: gaatgcctctgccct gacatc caaagt gatgtc cttttcgagatcagc ....................................................................................................................................................................................................................................................................gacatccaaagtgatgtc...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Find igs database================================================ Query_seq: PG1566:PG1570|PG1566:PG1570:glutamyl-tRNA synthetase:rhodanese-like domain protein:<-<-:1647492..1648671 1180 atccattatttggtaatcttttgtttgtacaatgccacaaaagtagcatattatctccgtaattttttcggcaaaaaagcctaaaaagggtcttagactgtctaatagcaaagcaaatccaaatacatatcggaaaaacgagagaattcggatccattcgatctcatcgacatgttcgtgcccattgatgcaatccatgtcttttacatcccggagaaaaaaaatcgaaaagaaattaggaaaaggctgatctcgaaaaggacatcactttggatgtcagggcagaggcattcaaaacagcgttctataaattttatagtcgttgaatgagccgtcagtcatgtattcagtctctatcggaaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccggtacgaaacacttacgatcgtaggcgtacgatgctctcctgcacggtgcaggagaccggcgtaggcgtacggtgctcgttacaacatgctaattaccagtacattatggccaattaaggtgaaatgaaaataatcttggaagttttccctgttttgcgtcttcaaaattcatttttcccccttgtttgggaagatcaggactcatttcttataatagaaaggcacccatgattgtaatttccaatagtaagagcaacacagactacagaaaattccccgaagagaccggccccttcggcagggggctatcgtatttgaaaggttgtactccgtatccttggtctcttccttctacaattaggatctctaacacattaattcgtgtttattccggacggaacatcatcagacctatatttcaaatgcaattgccctgctttggatgtgatttatagggtatagaaagcggtaatatcggattttgagaccttttgcatgctatagacagcagagtaaaagagaataggattcatttatatgatgtaaaaaaggattggttttatgatgatattcttgtcttcggaaagacaaaaattcaaaaaccaatccttcttaatagagaaagagttgtaacggtcgaagtctttctcagacttcgtta Intra-Species Hit: Count: 6 Min: 1 Max: 1180 Len: 1180 Subject: NC_002950_PG1566_PG1570|glutamyl-tRNA synthetase:rhodanese-like domain protein|NEGATIVE:NEGATIVE|[1647492,1648671]|1180 HSP 1 e-value: 0.0 bit: 1316.0 Len: 664 Query Start:517 Query End:1180 Subject Strand: POSITIVE Subject Start: 517 Subject End: 1180 ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ccggtacgaaacacttacgatcgtaggcgtacgatgctctcctgcacggtgcaggagaccggcgtaggcgtacggtgctcgttacaacatgctaattaccagtacattatggccaattaaggtgaaatgaaaataatcttggaagttttccctgttttgcgtcttcaaaattcatttttcccccttgtttgggaagatcaggactcatttcttataatagaaaggcacccatgattgtaatttccaatagtaagagcaacacagactacagaaaattccccgaagagaccggccccttcggcagggggctatcgtatttgaaaggttgtactccgtatccttggtctcttccttctacaattaggatctctaacacattaattcgtgtttattccggacggaacatcatcagacctatatttcaaatgcaattgccctgctttggatgtgatttatagggtatagaaagcggtaatatcggattttgagaccttttgcatgctatagacagcagagtaaaagagaataggattcatttatatgatgtaaaaaaggattggttttatgatgatattcttgtcttcggaaagacaaaaattcaaaaaccaatccttcttaatagagaaagagttgtaacggtcgaagtctttctcagacttcgtta ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ccggtacgaaacacttacgatcgtaggcgtacgatgctctcctgcacggtgcaggagaccggcgtaggcgtacggtgctcgttacaacatgctaattaccagtacattatggccaattaaggtgaaatgaaaataatcttggaagttttccctgttttgcgtcttcaaaattcatttttcccccttgtttgggaagatcaggactcatttcttataatagaaaggcacccatgattgtaatttccaatagtaagagcaacacagactacagaaaattccccgaagagaccggccccttcggcagggggctatcgtatttgaaaggttgtactccgtatccttggtctcttccttctacaattaggatctctaacacattaattcgtgtttattccggacggaacatcatcagacctatatttcaaatgcaattgccctgctttggatgtgatttatagggtatagaaagcggtaatatcggattttgagaccttttgcatgctatagacagcagagtaaaagagaataggattcatttatatgatgtaaaaaaggattggttttatgatgatattcttgtcttcggaaagacaaaaattcaaaaaccaatccttcttaatagagaaagagttgtaacggtcgaagtctttctcagacttcgtta HSP 2 e-value: 0.0 bit: 676.0 Len: 365 Query Start:1 Query End:365 Subject Strand: POSITIVE Subject Start: 1 Subject End: 365 atccattatttggtaatcttttgtttgtacaatgccacaaaagtagcatattatctccgtaattttttcggcaaaaaagcctaaaaagggtcttagactgtctaatagcaaagcaaatccaaatacatatcggaaaaacgagagaattcggatccattcgatctcatcgacatgttcgtgcccattgatgcaatccatgtcttttacatcccggagnnnnnnnntcgaaaagaaattaggaaaaggctgatctcgaaaaggacatcactttggatgtcagggcagaggcattcaaaacagcgttctataaattttatagtcgttgaatgagccgtcagtcatgtattcagtctctatcggaaaat............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... atccattatttggtaatcttttgtttgtacaatgccacaaaagtagcatattatctccgtaattttttcggcaaaaaagcctaaaaagggtcttagactgtctaatagcaaagcaaatccaaatacatatcggaaaaacgagagaattcggatccattcgatctcatcgacatgttcgtgcccattgatgcaatccatgtcttttacatcccggagaaaaaaaatcgaaaagaaattaggaaaaggctgatctcgaaaaggacatcactttggatgtcagggcagaggcattcaaaacagcgttctataaattttatagtcgttgaatgagccgtcagtcatgtattcagtctctatcggaaaat............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: NC_002950_PG1186_PG1189|hypothetical protein:hypothetical protein|NEGATIVE:POSITIVE|[1269242,1270131]|890 HSP 1 e-value: 0.0 bit: 704.0 Len: 439 Query Start:517 Query End:955 Subject Strand: NEGATIVE Subject Start: 46 Subject End: 484 ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ccggtacgaaacacttacgatcgtaggcgtacgatgctctcctgcacggtgcaggagaccggcgtaggcgtacggtgctcgttacaacatgctaattaccagtacattatggccaattaaggtgaaatgaaaataatcttggaagttttccctgttttgcgtcttcaaaattcatttttcccccttgtttgggaagatcaggactcatttcttataatagaaaggcacccatgattgtaatttccaatagtaagagcaacacagactacagaaaattccccgaagagaccggccccttcggcagggggctatcgtatttgaaaggttgtactccgtatccttggtctcttccttctacaattaggatctctaacacattaattcgtgtttattccggacggaacatcatcagacctatatttcaaatgcaattgccctg................................................................................................................................................................................................................................. ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ccggtacgaaacacttacgatcgtaggcgtacgatgccttcctgcacggtgcaggagaccggcgtaggcctacggtgctcattgcaacatgctaattaccagtacattatggccaattaaggtgaaatgaaaataatcttggaagttttccctgttttgcgtcttcaaaattcatttttcccccttgtttgggaagatcaggactcatttcttataatagaaagacacccgtgattgtaatttccgatagtaagcgcaacacagactacagaaaattccccgaagaggccggtctcttcgacagagggctatcgtatttgaaaggttgtactctgtatccttggtctcttccttctactattaggatctctaacacattaattcgtgtttattccggacggagcatcatcaggcttatatttcaaatgcgattgtcctg................................................................................................................................................................................................................................. HSP 2 e-value: 2.0E-25 bit: 119.0 Len: 80 Query Start:286 Query End:365 Subject Strand: NEGATIVE Subject Start: 639 Subject End: 718 .............................................................................................................................................................................................................................................................................................aggcattcaaaacagcgttctataaattttatagtcgttgaatgagccgtcagtcatgtattcagtctctatcggaaaat............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .............................................................................................................................................................................................................................................................................................aggcattcaaaacagcattctataagttttatagtcgttgaatgagtcgtcggtcatgtattcagtcactatcggaaaat............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: NC_002950_PG2092_PG2094|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[2193001,2193410]|410 HSP 1 e-value: 7.0E-81 bit: 303.0 Len: 207 Query Start:722 Query End:928 Subject Strand: POSITIVE Subject Start: 111 Subject End: 314 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................catttcttataatagaaaggcacccatgattgtaatttccaatagtaagagcaacacagactacagaaaattccccgaagagaccggccccttcggcagggggctatcgtatttgaaaggttgtactccgtatccttggtctcttccttctacaattaggatctctaacacattaattcgtgtttattccggacggaacatcatcag............................................................................................................................................................................................................................................................ .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cattccttataatagaaagatacccgtgattgtaatttccaatagtaagagcaacagagactacagaaaattccccgaagaggccggcctcttcggcagggggctatcgcatttgaaaggttgtactccg---ccttggtctcttccttctacaattaggatctctaacacattaattcgtgcttattccggacggagcatcatcag............................................................................................................................................................................................................................................................ Subject: NC_002950_PG0013_PG0016|hypothetical protein:sigma-54 dependent DNA-binding response regulator|POSITIVE:POSITIVE|[16502,17086]|585 HSP 1 e-value: 2.0E-72 bit: 276.0 Len: 207 Query Start:517 Query End:723 Subject Strand: POSITIVE Subject Start: 138 Subject End: 344 ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ccggtacgaaacacttacgatcgtaggcgtacgatgctctcctgcacggtgcaggagaccggcgtaggcgtacggtgctcgttacaacatgctaattaccagtacattatggccaattaaggtgaaatgaaaataatcttggaagttttccctgttttgcgtcttcaaaattcatttttcccccttgtttgggaagatcaggactca......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ccggtacgaaacacttacgatcgtaggcgtacgatgcactcctgcacgatgcaggagaccagcgtaggcgtacggtgctcattacaacatgctaattaccagtacattatggacaattaaagtaaaacgagaacgaccttggaaattttcccaatttcgcgtcttcaaaattcattttccccccttgtttgggaagatcaggactca......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 1.0E-42 bit: 176.0 Len: 101 Query Start:828 Query End:928 Subject Strand: POSITIVE Subject Start: 375 Subject End: 475 ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tcgtatttgaaaggttgtactccgtatccttggtctcttccttctacaattaggatctctaacacattaattcgtgtttattccggacggaacatcatcag............................................................................................................................................................................................................................................................ ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tcgtatttgaaaggtcgtactccgtatccttggtctcttccttctacaattaggatctctaacacattaattcgtgcttattccggacagaacatcatcag............................................................................................................................................................................................................................................................ Subject: NC_002950_PG0759_PG0762|TPR domain protein:trigger factor, putative|NEGATIVE:POSITIVE|[810876,812898]|2023 HSP 1 e-value: 2.0E-65 bit: 252.0 Len: 175 Query Start:538 Query End:712 Subject Strand: NEGATIVE Subject Start: 1505 Subject End: 1679 .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cgtaggcgtacgatgctctcctgcacggtgcaggagaccggcgtaggcgtacggtgctcgttacaacatgctaattaccagtacattatggccaattaaggtgaaatgaaaataatcttggaagttttccctgttttgcgtcttcaaaattcatttttcccccttgtttgggaag.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cgtaggcgtacgaaaccttcctgcacggtgcaggagaccagcgtaggcctacagtactaattacaacatgctaattaccagtacattatagccaattaaggtgaaatgaaaataatcttggaagttttccctgttttgcgtcttcaaaattcattttttccccttgtttgggaag.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 1.0E-14 bit: 83.8 Len: 58 Query Start:533 Query End:590 Subject Strand: NEGATIVE Subject Start: 1668 Subject End: 1725 ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................acgatcgtaggcgtacgatgctctcctgcacggtgcaggagaccggcgtaggcgtacg.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................acgatcgtagacgtacgatactctcctgcacgatgcaggagaccagcgtaggcgtacg.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. HSP 3 e-value: 2.0E-13 bit: 79.8 Len: 52 Query Start:721 Query End:772 Subject Strand: NEGATIVE Subject Start: 1400 Subject End: 1451 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tcatttcttataatagaaaggcacccatgattgtaatttccaatagtaagag........................................................................................................................................................................................................................................................................................................................................................................................................................ ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tcatttcttataatagaaagacacccgtgattgtaatttccgatagtaagag........................................................................................................................................................................................................................................................................................................................................................................................................................ Subject: NC_002950_PG1335_PG1337|hypothetical protein:umuD protein|NEGATIVE:POSITIVE|[1416985,1417952]|968 HSP 1 e-value: 2.0E-47 bit: 192.0 Len: 185 Query Start:533 Query End:717 Subject Strand: NEGATIVE Subject Start: 201 Subject End: 384 ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................acgatcgtaggcgtacgatgctctcctgcacggtgcaggagaccggcgtaggcgtacggtgctcgttacaacatgctaattaccagtacattatggccaattaaggtgaaatgaaaataatcttggaagttttccctgttttgcgtcttcaaaattcatttttcccccttgtttgggaagatcag............................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................acgatcgtaggcgtacgacgccttcctgcacggtgcaggagaccagcgtaggcctacggtgctcattacaacatgctaattatcagtgcattatggccaattaaagtaaaacgagaacgaccttagaaattttccctgttttgcgtcttcaaaattc-gtttccccccttgtttgggaagttcag............................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AUCCAUUAUUUGGUAAUCUUUUGUUUGUACAAUGCCACAAAAGUAGCAUAUUAUCUCCGUAAUUUUUUCGGCAAAAAAGCCUAAAAAGGGUCUUAGACUGUCUAAUAGCAAAGCAAAUCCAAAUACAUAUCGGAAAAACGAGAGAAUUCGGAUCCAUUCGAUCUCAUCGACAUGUUCGUGCCCAUUGAUGCAAUCCAUGUCUUUUACAUCCCGGAGAAAAAAAAUCGAAAAGAAAUUAGGAAAAGGCUGAUCUCGAAAAGGACAUCACUUUGGAUGUCAGGGCAGAGGCAUUCAAAACAGCGUUCUAUAAAUUUUAUAGUCGUUGAAUGAGCCGUCAGUCAUGUAUUCAGUCUCUAUCGGAAAAUCUCUUCAUGGUCUCGGACCCACGGAUAGAGAGCAAAGAAGUUUAUCCUCUUGACUUUUUAUUCCUGAUCGUUUUCCUCUCUACGCUCUCAGGUGAUACCUCUGGUACGAGAUUGAAGAUUAUGCAGAGGAAUACGAAGAAGUGUUGAAAAGCCGGUACGAAACACUUACGAUCGUAGGCGUACGAUGCUCUCCUGCACGGUGCAGGAGACCGGCGUAGGCGUACGGUGCUCGUUACAACAUGCUAAUUACCAGUACAUUAUGGCCAAUUAAGGUGAAAUGAAAAUAAUCUUGGAAGUUUUCCCUGUUUUGCGUCUUCAAAAUUCAUUUUUCCCCCUUGUUUGGGAAGAUCAGGACUCAUUUCUUAUAAUAGAAAGGCACCCAUGAUUGUAAUUUCCAAUAGUAAGAGCAACACAGACUACAGAAAAUUCCCCGAAGAGACCGGCCCCUUCGGCAGGGGGCUAUCGUAUUUGAAAGGUUGUACUCCGUAUCCUUGGUCUCUUCCUUCUACAAUUAGGAUCUCUAACACAUUAAUUCGUGUUUAUUCCGGACGGAACAUCAUCAGACCUAUAUUUCAAAUGCAAUUGCCCUGCUUUGGAUGUGAUUUAUAGGGUAUAGAAAGCGGUAAUAUCGGAUUUUGAGACCUUUUGCAUGCUAUAGACAGCAGAGUAAAAGAGAAUAGGAUUCAUUUAUAUGAUGUAAAAAAGGAUUGGUUUUAUGAUGAUAUUCUUGUCUUCGGAAAGACAAAAAUUCAAAAACCAAUCCUUCUUAAUAGAGAAAGAGUUGUAACGGUCGAAGUCUUUCUCAGACUUCGUUA .........((.(((.((((((((.......((((.((....)).))))......((((.((((((((((((......((((.....)))).((((.....))))..))........(((...........)))....))))))))))))))....(((((((((...((((((....(((........)))...)))))).........((((((..........(((((...((((((((..(((((((((((.............((((((((((........)))))))))).(((((..(((((.....))))).)))))..))))..)))))))..........((((((((.(((......)))..((((...))))....))))))))...((((((((.........)))))))).))))))))..))))).......((((....))))....))))))...)))))))))......)))))))).))).)).(((((((...............)))))))...((((((.((.((((.((.((((((((.....)))))))).)).)))).)).))))))..((((((((((...((((((.......((((.(.(((......))).)))))..........((((((......((((.((((.(((((...............(((......)))..(((((((.....(((((......))))).....)).))))).............).)))))))).)))).................(((((((((.((((((......))))))............((((..((((...))))))))))))))))))))))).))))))..((((((..((((((..((((.(((.((((....))))..........((((((..(((.((.(((..((...)).))).)).)))..)))))).....))).)))).......((((((((....(((((((.((((......))))..)))))))....)))))))).......))))))....(((((((((((((.(((....(((.(((((((....))))))).))))))))))))))))))).....))))))....)))))))))).((((((((.....))))))))... (-327.56) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAACGAAGUCUGAGAAAGACUUCGACCGUUACAACUCUUUCUCUAUUAAGAAGGAUUGGUUUUUGAAUUUUUGUCUUUCCGAAGACAAGAAUAUCAUCAUAAAACCAAUCCUUUUUUACAUCAUAUAAAUGAAUCCUAUUCUCUUUUACUCUGCUGUCUAUAGCAUGCAAAAGGUCUCAAAAUCCGAUAUUACCGCUUUCUAUACCCUAUAAAUCACAUCCAAAGCAGGGCAAUUGCAUUUGAAAUAUAGGUCUGAUGAUGUUCCGUCCGGAAUAAACACGAAUUAAUGUGUUAGAGAUCCUAAUUGUAGAAGGAAGAGACCAAGGAUACGGAGUACAACCUUUCAAAUACGAUAGCCCCCUGCCGAAGGGGCCGGUCUCUUCGGGGAAUUUUCUGUAGUCUGUGUUGCUCUUACUAUUGGAAAUUACAAUCAUGGGUGCCUUUCUAUUAUAAGAAAUGAGUCCUGAUCUUCCCAAACAAGGGGGAAAAAUGAAUUUUGAAGACGCAAAACAGGGAAAACUUCCAAGAUUAUUUUCAUUUCACCUUAAUUGGCCAUAAUGUACUGGUAAUUAGCAUGUUGUAACGAGCACCGUACGCCUACGCCGGUCUCCUGCACCGUGCAGGAGAGCAUCGUACGCCUACGAUCGUAAGUGUUUCGUACCGGCUUUUCAACACUUCUUCGUAUUCCUCUGCAUAAUCUUCAAUCUCGUACCAGAGGUAUCACCUGAGAGCGUAGAGAGGAAAACGAUCAGGAAUAAAAAGUCAAGAGGAUAAACUUCUUUGCUCUCUAUCCGUGGGUCCGAGACCAUGAAGAGAUUUUCCGAUAGAGACUGAAUACAUGACUGACGGCUCAUUCAACGACUAUAAAAUUUAUAGAACGCUGUUUUGAAUGCCUCUGCCCUGACAUCCAAAGUGAUGUCCUUUUCGAGAUCAGCCUUUUCCUAAUUUCUUUUCGAUUUUUUUUCUCCGGGAUGUAAAAGACAUGGAUUGCAUCAAUGGGCACGAACAUGUCGAUGAGAUCGAAUGGAUCCGAAUUCUCUCGUUUUUCCGAUAUGUAUUUGGAUUUGCUUUGCUAUUAGACAGUCUAAGACCCUUUUUAGGCUUUUUUGCCGAAAAAAUUACGGAGAUAAUAUGCUACUUUUGUGGCAUUGUACAAACAAAAGAUUACCAAAUAAUGGAU ...((((((((.....)))))))).((((((................((((((((((((((((((((((((((((((....)))))))))))....))).))))))))))))))))....((((....)))).........((((((.(((((((((((((((((.(((...(((((((....................................((((((.....((((((...(((((..((((((((((((.....((((((....))))))((((((......))))))..))).)))).((((((...(((((((((..(((...((.......)).)))..........(((((........))))).)))))))))...((((...((((((((((((((.(..((.((((((((((......((((((.................((((((((...((((((((((........))))........(((((......)))))..((((....)))).))))))..)))))))).......((((((........((((((...(((((......((((....((((.((.((((..(.((((((((.....)))))))).)..)))).)).)))).))))..)))))...))))))........(((....((((.(((((((..((..(((.(((((((......)))))......)))))..))..))))))).))))...(((......(((.((((((.....)))))).))).....)))))))).))))..))))))......)))))))))).))..))))))).)))).))))...)))).....))))))..............)))))..)))))...))))))((((((......))))))....((((((....................)))))).............))))))....((((((...(((........)))....))))))..))))))).....(((((((((.(..(((......)))...).))))))))))))..))))).)))))))..........(((((.(((......))).)))))....))))).....(((((((....))))))).........))))))........)))))).. (-338.95) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 914 420 371 157 108 NC_002950:PG2123|5end_hypothetical_protein_2229891..2230121_POSITIVE 869 360 312 156 108 NC_002950:PG1846|5end_hypothetical_protein_1946037..1946267_POSITIVE 842 120 71 211 162 NC_002950:PG1566|5end_glutamyl-tRNA_synthetase_1647401..1647631_NEGATIVE 711 928 881 143 96 NC_002950:PG1787|5end_hypothetical_protein_1875908..1876138_NEGATIVE 566 340 291 227 178 NC_002950:PG1345|5end_glycosyl_transferase,_group_1_family_protein_1425590..1425820_POSITIVE 527 578 535 63 19 NC_002950:PG2114|5end_hypothetical_protein_2224158..2224388_NEGATIVE 515 577 533 151 107 NC_002950:PG1970|5end_hypothetical_protein_2059783..2060013_NEGATIVE 495 574 533 230 188 NC_002950:PG1974|5end_hypothetical_protein_2063055..2063285_NEGATIVE 467 579 534 197 149 NC_002950:PG1975|5end_hemagglutinin_protein_HagC_2063218..2063448_POSITIVE 447 599 551 128 47 NC_002950:PG1346|5end_glycosyl_transferase,_group_1_family_protein_1426708..1426938_POSITIVE 443 597 554 161 107 NC_002950:PG2087|5end_hypothetical_protein_2186990..2187220_POSITIVE 441 835 791 52 12 NC_002950:PG0265|5end_hypothetical_protein_298551..298781_NEGATIVE 437 585 544 52 17 NC_002950:PG0575|5end_penicillin-binding_protein_2,_putative_629501..629731_POSITIVE 427 579 538 187 141 NC_002950:PG1852|5end_exonuclease_1951973..1952203_NEGATIVE 419 590 542 94 34 NC_002950:PG0166|5end_peptidyl-tRNA_hydrolase_188370..188600_NEGATIVE 416 588 541 209 161 NC_002950:PG2027|5end_hypothetical_protein_2125494..2125724_POSITIVE 413 723 691 157 124 NC_002950:PG2092|5end_hypothetical_protein_2192910..2193140_NEGATIVE 411 585 542 204 156 NC_002950:PG1997|5end_hypothetical_protein_2086831..2087061_POSITIVE 410 600 559 72 29 NC_002950:PG1667|5end_outer_membrane_efflux_protein_1749545..1749775_POSITIVE 408 585 542 222 172 NC_002950:PG2064|5end_hypothetical_protein_2160550..2160780_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 488 590 545 130 85 NC_002950:PG1027|3end_hypothetical_protein_1089197..1089347_NEGATIVE 447 599 551 131 50 NC_002950:PG1345|3end_glycosyl_transferase,_group_1_family_protein_1426791..1426941_POSITIVE 437 585 544 42 7 NC_002950:PG0574|3end_hypothetical_protein_629571..629721_POSITIVE 430 287 245 145 104 NC_002950:PG0708|3end_peptidyl-prolyl_cis-trans_isomerase,_FKBP-type_763798..763948_NEGATIVE 410 799 752 143 94 NC_002950:PG1861|3end_hypothetical_protein_1959887..1960037_NEGATIVE 410 600 559 75 32 NC_002950:PG1666|3end_efflux_transporter,_MFP_component,_RND_family_1749628..1749778_POSITIVE 408 579 531 90 20 NC_002950:PG0607|3end_hypothetical_protein_662994..663144_POSITIVE 406 844 805 151 104 NC_002950:PG2036|3end_ion_transporter_2137552..2137702_POSITIVE 400 1019 972 58 1 NC_002950:PG0495|3end_hypothetical_protein_536936..537086_POSITIVE 399 824 787 54 8 NC_002950:PG0143|3end_hydrolase,_carbon-nitrogen_family_165747..165897_NEGATIVE 398 588 541 75 12 NC_002950:PG1801|3end_v-type_ATPase,_subunit_E,_putative_1895616..1895766_POSITIVE 397 597 557 58 10 NC_002950:PG2158|3end_hypothetical_protein_2264473..2264623_POSITIVE 397 608 561 146 99 NC_002950:PG0962|3end_prolyl-tRNA_synthetase_1022327..1022477_NEGATIVE 396 597 551 145 99 NC_002950:PG1690|3end_Sua5/YciO/YrdC/YwlC_family_protein_1775171..1775321_NEGATIVE 395 579 533 41 1 NC_002950:PG1246|3end_alanyl-tRNA_synthetase_1324509..1324659_POSITIVE 394 589 541 129 80 NC_002950:PG1589|3end_dihydropteroate_synthase_1666593..1666743_NEGATIVE 393 609 563 67 14 NC_002950:PG1110|3end_hypothetical_protein_1183237..1183387_POSITIVE 390 379 334 74 29 NC_002950:PG1664|3end_ABC_transporter,_permease_protein,_putative_1747167..1747317_POSITIVE 389 580 535 67 16 NC_002950:PG1416|3end_enoyl-(acyl-carrier-protein)_reductase_II_1501078..1501228_POSITIVE 387 558 515 148 95 NC_002950:PG0768|3end_hypothetical_protein_821275..821425_NEGATIVE