Origin IGS: atcggaaaaatgaaacaaataaatcgtccgctccacctgcgcgagggagaagtactatacttcgacaaacctctcacatggacttcgttcgacttggtcaataaattccgctatcgggcttgtcgtcggatgggtatcaagaagttgcgcgtagggcatgccggcacattggatccattggcatcgggcgtgatgatcctgtgcacgggacgtgccacgaagcaaatcgatgtgctgcaggccggcacgaaagagtacattgccgccatcagactgggtgctacgacaccgagtttcgacaaggaaacggaaccggatgctttcttcccgtacgaacatatcacgcgccaatcgatcctggacatactacctcgattcacgggaacgatagaacaggtaccgcccatattctctgctgttcgcgtgaacgggaaacgcgcatacgatttggctcgaaaggggaaagaggtggagatgaaaacccgtacgttgcagatcgacgagatcgaactactggagtatgccctacccctcatcacgctacggatcgtatgcagcaaaggcacttatatacgtgctctggctcgtgacattgccacagccctcgaatcgggaggacatttggaggcattgcgcaggacaagagtaggcaatgcgcgtatcgaagactgcctttcgatggatgagttggaacaatggttcgaccgtcttggttttgcttatgaaccggagttcgaacaaaaagaggacaatccgtcttccacacctacaaataaaaataactaacggcaacatatatcgct .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 agcgatatatgttgccgttagttatttttatttgtaggtgtggaagacggattgtcctctttttgttcgaactccggttcataagcaaaaccaagacggtcgaaccattgttccaactcatccatcgaaaggcagtcttcgatacgcgcattgcctactcttgtcctgcgcaatgcctccaaatgtcctcccgattcgagggctgtggcaatgtcacgagccagagcacgtatataagtgcctttgctgcatacgatccgtagcgtgatgaggggtagggcatactccagtagttcgatctcgtcgatctgcaacgtacgggttttcatctccacctctttcccctttcgagccaaatcgtatgcgcgtttcccgttcacgcgaacagcagagaatatgggcggtacctgttctatcgttcccgtgaatcgaggtagtatgtccaggatcgattggcgcgtgatatgttcgtacgggaagaaagcatccggttccgtttccttgtcgaaactcggtgtcgtagcacccagtctgatggcggcaatgtactctttcgtgccggcctgcagcacatcgatttgcttcgtggcacgtcccgtgcacaggatcatcacgcccgatgccaatggatccaatgtgccggcatgccctacgcgcaacttcttgatacccatccgacgacaagcccgatagcggaatttattgaccaagtcgaacgaagtccatgtgagaggtttgtcgaagtatagtacttctccctcgcgcaggtggagcggacgatttatttgtttcatttttccgat Mask Tandem Repeat Region ================================================ atcggaaaaatgaaacaaataaatcgtccgctccacctgcgcgagggagaagtactatacttcgacaaacctctcacatggacttcgttcgacttggtcaataaattccgctatcgggcttgtcgtcggatgggtatcaagaagttgcgcgtagggcatgccggcacattggatccattggcatcgggcgtgatgatcctgtgcacgggacgtgccacgaagcaaatcgatgtgctgcaggccggcacgaaagagtacattgccgccatcagactgggtgctacgacaccgagtttcgacaaggaaacggaaccggatgctttcttcccgtacgaacatatcacgcgccaatcgatcctggacatactacctcgattcacgggaacgatagaacaggtaccgcccatattctctgctgttcgcgtgaacgggaaacgcgcatacgatttggctcgaaaggggaaagaggtggagatgaaaacccgtacgttgcagatcgacgagatcgaactactggagtatgccctacccctcatcacgctacggatcgtatgcagcaaaggcacttatatacgtgctctggctcgtgacattgccacagccctcgaatcgggaggacatttggaggcattgcgcaggacaagagtaggcaatgcgcgtatcgaagactgcctttcgatggatgagttggaacaatggttcgaccgtcttggttttgcttatgaaccggagttcgaacaaaaagaggacaatccgtcttccacacctacaaataaaaataactaacggcaacatatatcgct Find is-nt database================================================ Query_seq: PG1538:PG1540|PG1538:PG1540:undecaprenol kinase, putative:S-adenosylmethionine:tRNA ribosyltransferase-isomerase:->->:1618614..1619416 803 atcggaaaaatgaaacaaataaatcgtccgctccacctgcgcgagggagaagtactatacttcgacaaacctctcacatggacttcgttcgacttggtcaataaattccgctatcgggcttgtcgtcggatgggtatcaagaagttgcgcgtagggcatgccggcacattggatccattggcatcgggcgtgatgatcctgtgcacgggacgtgccacgaagcaaatcgatgtgctgcaggccggcacgaaagagtacattgccgccatcagactgggtgctacgacaccgagtttcgacaaggaaacggaaccggatgctttcttcccgtacgaacatatcacgcgccaatcgatcctggacatactacctcgattcacgggaacgatagaacaggtaccgcccatattctctgctgttcgcgtgaacgggaaacgcgcatacgatttggctcgaaaggggaaagaggtggagatgaaaacccgtacgttgcagatcgacgagatcgaactactggagtatgccctacccctcatcacgctacggatcgtatgcagcaaaggcacttatatacgtgctctggctcgtgacattgccacagccctcgaatcgggaggacatttggaggcattgcgcaggacaagagtaggcaatgcgcgtatcgaagactgcctttcgatggatgagttggaacaatggttcgaccgtcttggttttgcttatgaaccggagttcgaacaaaaagaggacaatccgtcttccacacctacaaataaaaataactaacggcaacatatatcgct Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PG1538:PG1540|PG1538:PG1540:undecaprenol kinase, putative:S-adenosylmethionine:tRNA ribosyltransferase-isomerase:->->:1618614..1619416 803 atcggaaaaatgaaacaaataaatcgtccgctccacctgcgcgagggagaagtactatacttcgacaaacctctcacatggacttcgttcgacttggtcaataaattccgctatcgggcttgtcgtcggatgggtatcaagaagttgcgcgtagggcatgccggcacattggatccattggcatcgggcgtgatgatcctgtgcacgggacgtgccacgaagcaaatcgatgtgctgcaggccggcacgaaagagtacattgccgccatcagactgggtgctacgacaccgagtttcgacaaggaaacggaaccggatgctttcttcccgtacgaacatatcacgcgccaatcgatcctggacatactacctcgattcacgggaacgatagaacaggtaccgcccatattctctgctgttcgcgtgaacgggaaacgcgcatacgatttggctcgaaaggggaaagaggtggagatgaaaacccgtacgttgcagatcgacgagatcgaactactggagtatgccctacccctcatcacgctacggatcgtatgcagcaaaggcacttatatacgtgctctggctcgtgacattgccacagccctcgaatcgggaggacatttggaggcattgcgcaggacaagagtaggcaatgcgcgtatcgaagactgcctttcgatggatgagttggaacaatggttcgaccgtcttggttttgcttatgaaccggagttcgaacaaaaagaggacaatccgtcttccacacctacaaataaaaataactaacggcaacatatatcgct Intra-Species Hit: Count: 0 Inter-species Hit: Count: 1 Min: 52 Max: 696 Len: 645 Subject: gi|89109931|ref|AP_003711.1| tRNA pseudouridine synthase [Escherichia coli W3110] HSP 1 e-value: 2.0E-26 bit: 115.0 Len: 645 Query Start:52 Query End:696 Subject Strand: null Subject Start: 14 Subject End: 221 ................................................... V L Y F D K P L T W T S F D L V N K F R - - Y R A C R R M G I K K L R V G H A G T L D P L A S G V M I L C T G R A T K Q I D V L Q A G T K E Y I A A I R L G A T T P S F D K E T E P D A F F P Y E H I T R Q S I L D I L P R F T G T I E Q V P P I F S A V R V N G K R A Y D L A R K G K E V E M K T R T L Q I D E I E L L E Y A L P L I T L R I V C S K G T Y I R A L A R D I A T A L E S G G H L E A L R R T R V G N A R I E D C L S M D E L E Q ........................................................................................................... ................................................... V L L L D K P Q G M S S N D A L Q K V K R I Y N A N R - - - - - - - - A G H T G A L D P L A T G M L P I C L G E A T K F S Q Y L L D S D K R Y R V I A R L G Q R T D T S D A D G Q I V E E R P V T F S A E Q - L A A A L D T F R G D I E Q I P S M Y S A L K Y Q G K K L Y E Y A R Q G I E V P R E A R P I T V Y E L L F I R H E G N E L E L E I H C S K G T Y I R T I I D D L G E K L G C G A H V I Y L R R L A V S K Y P V E R M V T L E H L R E ........................................................................................................... Find nr database================================================ Query_seq: PG1538:PG1540|PG1538:PG1540:undecaprenol kinase, putative:S-adenosylmethionine:tRNA ribosyltransferase-isomerase:->->:1618614..1619416 803 atcggaaaaatgaaacaaataaatcgtccgctccacctgcgcgagggagaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntggttcgaccgtcttggttttgcttatgaaccggagttcgaacaaaaagaggacaatccgtcttccacacctacaaataaaaataactaacggcaacatatatcgct Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 atcggaaaaatgaaacaaataaatcgtccgctccacctgcgcgagggagaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntggttcgaccgtcttggttttgcttatgaaccggagttcgaacaaaaagaggacaatccgtcttccacacctacaaataaaaataactaacggcaacatatatcgct Predict ORF larger than 30AA ================================================ Protein_Len: 43 Strand: + Start: 23 End: 151 ...................... M V R S T C A R E K Y Y T S T N L S H G L R S T W S I N S A I G L V V G W V S R S C A ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 59 Strand: + Start: 212 End: 388 ................................................................................................................................................................................................................... M P R S K S M C C R P A R K S T L P P S D W V L R H R V S T R K R N R M L S S R T N I S R A N R S W T Y Y L D S R E R ............................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 105 End: 587 ........................................................................................................ M P L S G L S S D G Y Q E V A R R A C R H I G S I G I G R D D P V H G T C H E A N R C A A G R H E R V H C R H Q T G C Y ........................................................................................................................................................................................................................ Protein_Len: 42 Strand: + Start: 521 End: 646 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ M P Y P S S R Y G S Y A A K A L I Y V L W L V T L P Q P S N R E D I W R H C A G Q E ............................................................................................................................................................. Protein_Len: 60 Strand: + Start: 1 End: 783 M G K M K Q I N R P L H L R E G E V L Y F D K P L T W T S F D L V N K F R Y R A C R R M G I K K L R V G H A G T L D P L .................... Protein_Len: 50 Strand: + Start: 653 End: 802 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ M R V S K T A F R W M S W N N G S T V L V L L M N R S S N K K R T I R L P H L Q I K I T N G N I Y R . Protein_Len: 37 Strand: - Start: 570 End: 680 ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... I R A R A R S M A V A R S D P P C K S A N R L V L T P L A R I S S Q R E M ........................................................................................................................... Protein_Len: 60 Strand: - Start: 544 End: 795 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... S M Q L C Q A P C S Y A I R T D F V A K R H I L Q F L P E V T K T K S I F R L E F L F L V I R R G C R C I F I V L P L M ........ Protein_Len: 60 Strand: - Start: 539 End: 766 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... H C Q W L G R I P L V N P P M A C S L L L C H A Y R L S G K S P H T P V I T R G D Q N Q K H V P T R V F L P C D T K W M ..................................... Protein_Len: 42 Strand: - Start: 370 End: 495 ................................................................................................................................................................................................................................................................................................................................................................................. R S E R S R Y F L Y R G Y E R S N A H V P F A C V I Q S S L P F L H L H F G T R Q M .................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 114 End: 566 ................................................................................................................. I S C T G G M N E A T R T F P F R A Y S K A R F P F S T S I F V R V N C I S S I S S S S Y A R G R M V S R I T H L L P M ............................................................................................................................................................................................................................................. Protein_Len: 60 Strand: - Start: 58 End: 351 ......................................................... I W Q C R A H H D Q A R S T G R L L D I H Q L G A R F L V N G G D S Q T S R C R T E V L F R F R I S E E R V F M D R A M .................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 33 Strand: - Start: 3 End: 101 .. P F I F C I F R G S W R R S P S T S Y K S L G R V H V E N S K T M .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. atcggaaaaatgaaacaaataaatcgtccgctccacctgcgcgagggagaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntggttcgaccgtcttggttttgcttatgaaccggagttcgaacaaaaagaggacaatccgtcttccacacctacaaataaaaataactaacggcaacatatatcgct Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ PromScan Matrix: RpoN Strand: - Score: 89 Start: 202 End: 218 .........................................................................................................................................................................................................GTGGCACGTCCCGTGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... atcggaaaaatgaaacaaataaatcgtccgctccacctgcgcgagggagaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntggttcgaccgtcttggttttgcttatgaaccggagttcgaacaaaaagaggacaatccgtcttccacacctacaaataaaaataactaacggcaacatatatcgct Predict TransTerm conf > 70================================================ Find igs database================================================ Query_seq: PG1538:PG1540|PG1538:PG1540:undecaprenol kinase, putative:S-adenosylmethionine:tRNA ribosyltransferase-isomerase:->->:1618614..1619416 803 atcggaaaaatgaaacaaataaatcgtccgctccacctgcgcgagggagaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntggttcgaccgtcttggttttgcttatgaaccggagttcgaacaaaaagaggacaatccgtcttccacacctacaaataaaaataactaacggcaacatatatcgct Intra-Species Hit: Count: 1 Min: 1 Max: 803 Len: 803 Subject: NC_002950_PG1538_PG1540|undecaprenol kinase, putative:S-adenosylmethionine:tRNA ribosyltransferase-isomerase|POSITIVE:POSITIVE|[1618614, 1619416]|803 HSP 1 e-value: 1.0E-53 bit: 212.0 Len: 107 Query Start:697 Query End:803 Subject Strand: POSITIVE Subject Start: 697 Subject End: 803 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tggttcgaccgtcttggttttgcttatgaaccggagttcgaacaaaaagaggacaatccgtcttccacacctacaaataaaaataactaacggcaacatatatcgct ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tggttcgaccgtcttggttttgcttatgaaccggagttcgaacaaaaagaggacaatccgtcttccacacctacaaataaaaataactaacggcaacatatatcgct HSP 2 e-value: 4.0E-20 bit: 101.0 Len: 51 Query Start:1 Query End:51 Subject Strand: POSITIVE Subject Start: 1 Subject End: 51 atcggaaaaatgaaacaaataaatcgtccgctccacctgcgcgagggagaa................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ atcggaaaaatgaaacaaataaatcgtccgctccacctgcgcgagggagaa................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AUCGGAAAAAUGAAACAAAUAAAUCGUCCGCUCCACCUGCGCGAGGGAGAAGUACUAUACUUCGACAAACCUCUCACAUGGACUUCGUUCGACUUGGUCAAUAAAUUCCGCUAUCGGGCUUGUCGUCGGAUGGGUAUCAAGAAGUUGCGCGUAGGGCAUGCCGGCACAUUGGAUCCAUUGGCAUCGGGCGUGAUGAUCCUGUGCACGGGACGUGCCACGAAGCAAAUCGAUGUGCUGCAGGCCGGCACGAAAGAGUACAUUGCCGCCAUCAGACUGGGUGCUACGACACCGAGUUUCGACAAGGAAACGGAACCGGAUGCUUUCUUCCCGUACGAACAUAUCACGCGCCAAUCGAUCCUGGACAUACUACCUCGAUUCACGGGAACGAUAGAACAGGUACCGCCCAUAUUCUCUGCUGUUCGCGUGAACGGGAAACGCGCAUACGAUUUGGCUCGAAAGGGGAAAGAGGUGGAGAUGAAAACCCGUACGUUGCAGAUCGACGAGAUCGAACUACUGGAGUAUGCCCUACCCCUCAUCACGCUACGGAUCGUAUGCAGCAAAGGCACUUAUAUACGUGCUCUGGCUCGUGACAUUGCCACAGCCCUCGAAUCGGGAGGACAUUUGGAGGCAUUGCGCAGGACAAGAGUAGGCAAUGCGCGUAUCGAAGACUGCCUUUCGAUGGAUGAGUUGGAACAAUGGUUCGACCGUCUUGGUUUUGCUUAUGAACCGGAGUUCGAACAAAAAGAGGACAAUCCGUCUUCCACACCUACAAAUAAAAAUAACUAACGGCAACAUAUAUCGCU ....((.(.(((.............(((..(((..(((((((((.(..((((((...))))))..)...((((.((.(((..((((((((((...(((.......((((.((.(((((((.(((((..(((....))).......(((((((..((.((((((.......(((((.((((((.....((((((((.((((..(((((...)))))..((((((.....((((.((.((((....((.(....).))...)))).))))))......((((......))))..))))))...))))..((..((.(((........))).)).))....)))))))))))))).)))))))).))).))..((((.((((((.(((((.((((...((.....)).......)))).))))).))))))))))..))))))).)))))..))))))).)).))))....((((..(((.....((((((((....((((.....))))........((.(((.....))).)).....))).)))))....((((.(((...(((((........)))))...))))))).)))..)))).))).))))))..))))..))).))))))..)))))))))....)))..)))..(((.(((.((((((......)))))).((.((.(((.((((..((((((((((.....))))........))))))..)))).))).....((((((.....))))))..))))..................)))))).))).).))... (-259.31) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AGCGAUAUAUGUUGCCGUUAGUUAUUUUUAUUUGUAGGUGUGGAAGACGGAUUGUCCUCUUUUUGUUCGAACUCCGGUUCAUAAGCAAAACCAAGACGGUCGAACCAUUGUUCCAACUCAUCCAUCGAAAGGCAGUCUUCGAUACGCGCAUUGCCUACUCUUGUCCUGCGCAAUGCCUCCAAAUGUCCUCCCGAUUCGAGGGCUGUGGCAAUGUCACGAGCCAGAGCACGUAUAUAAGUGCCUUUGCUGCAUACGAUCCGUAGCGUGAUGAGGGGUAGGGCAUACUCCAGUAGUUCGAUCUCGUCGAUCUGCAACGUACGGGUUUUCAUCUCCACCUCUUUCCCCUUUCGAGCCAAAUCGUAUGCGCGUUUCCCGUUCACGCGAACAGCAGAGAAUAUGGGCGGUACCUGUUCUAUCGUUCCCGUGAAUCGAGGUAGUAUGUCCAGGAUCGAUUGGCGCGUGAUAUGUUCGUACGGGAAGAAAGCAUCCGGUUCCGUUUCCUUGUCGAAACUCGGUGUCGUAGCACCCAGUCUGAUGGCGGCAAUGUACUCUUUCGUGCCGGCCUGCAGCACAUCGAUUUGCUUCGUGGCACGUCCCGUGCACAGGAUCAUCACGCCCGAUGCCAAUGGAUCCAAUGUGCCGGCAUGCCCUACGCGCAACUUCUUGAUACCCAUCCGACGACAAGCCCGAUAGCGGAAUUUAUUGACCAAGUCGAACGAAGUCCAUGUGAGAGGUUUGUCGAAGUAUAGUACUUCUCCCUCGCGCAGGUGGAGCGGACGAUUUAUUUGUUUCAUUUUUCCGAU .((((.((((((..(((((((((..........((((((((.((((((.(((((((....(((((((.((((....))))...)))))))....))))))).......................((....))..)))))).)).........))))))....((((((.(((.((((((.....((((((.......))))))...((((((((.(((.((....)).)))))))...))))...((.(((((((((.....((.(((.((((((.((((.........((((.(((((...))))).)))).......(((........)))..))))..))))))))).))...))))))))))).......(((((((.((((.....((((((.((......))))))))...)))).))))))).))))))...))).)))))).)))))))).)..)))))))))).(((((((((((((...((((((((((((((((((..(((.(((((....))))).)))..(((((.(((...((((......))))..)))........(((((.((((..(((((..(((.(((.((((((((((.....((.....)).....)))))..)))))))).)))..))))).))))....)))))..)))))...)))))))...)).)))))))))........((((((..((...(((((.((.((((......((((((...))))))..))))...)).))))).))..))))))...)))))..)))))))).. (-261.60) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 464 190 142 191 134 NC_002950:PG1021|5end_hypothetical_protein_1083592..1083822_NEGATIVE 454 266 227 165 122 NC_002950:PG1586|5end_batE_protein_1664054..1664284_POSITIVE 434 198 154 71 20 NC_002950:PG0280|5end_ABC_transporter,_permease_protein,_putative_314625..314855_NEGATIVE 429 190 141 70 7 NC_002950:PG1485|5end_conjugative_transposon_protein_TraC_1560370..1560600_NEGATIVE 427 190 142 212 172 NC_002950:PG0854|5end_hypothetical_protein_914870..915100_POSITIVE 425 165 121 67 16 NC_002950:PG1677|5end_phosphoglycerate_kinase_1762342..1762572_POSITIVE 422 243 202 182 126 NC_002950:PG0422|5end_hypothetical_protein_462302..462532_NEGATIVE 421 639 601 46 2 NC_002950:PG0425|5end_esterase,_putative_463989..464219_NEGATIVE 414 220 171 56 10 NC_002950:PG0417|5end_ATP-dependent_protease_ATP-binding_subunit_458624..458854_NEGATIVE 412 250 204 93 45 NC_002950:PG1594|5end_ComEC/Rec2-related_protein_1673587..1673817_NEGATIVE 408 250 202 191 139 NC_002950:PG1852|5end_exonuclease_1951973..1952203_NEGATIVE 408 280 235 44 4 NC_002950:PG0017|5end_sensor_histidine_kinase_18307..18537_POSITIVE 407 500 452 98 39 NC_002950:PG0884|5end_hypothetical_protein_946479..946709_POSITIVE 405 160 111 204 137 NC_002950:PG2187|5end_1,4-dihydroxy-2-naphthoate_octaprenyltransferase_2294643..2294873_NEGATIVE 404 189 143 203 147 NC_002950:PG0159|5end_endopeptidase_PepO_183164..183394_NEGATIVE 403 209 161 176 133 NC_002950:PG0961|5end_hypothetical_protein_1022272..1022502_NEGATIVE 402 319 276 155 93 NC_002950:PG0145|5end_hypothetical_protein_167831..168061_POSITIVE 400 619 574 200 144 NC_002950:PG1655|5end_hypothetical_protein_1737095..1737325_POSITIVE 398 564 524 160 122 NC_002950:PG1954|5end_NAD_dependent_epimerase/reductase-related_protein_2044513..2044743_POSITIVE 398 239 199 35 1 NC_002950:PG1626|5end_hypothetical_protein_1708742..1708972_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 436 247 201 131 75 NC_002950:PG2062|3end_histidyl-tRNA_synthetase_2160415..2160565_POSITIVE 429 190 141 83 20 NC_002950:PG1486|3end_conjugative_transposon_protein_TraA_1560357..1560507_NEGATIVE 428 245 202 146 92 NC_002950:PG0758|3end_peptidyl-dipeptidase_Dcp_806467..806617_NEGATIVE 412 250 204 86 38 NC_002950:PG1595|3end_ribulose-phosphate_3-epimerase_1673594..1673744_NEGATIVE 412 290 242 144 99 NC_002950:PG1556|3end_hypothetical_protein_1637001..1637151_POSITIVE 407 500 452 101 42 NC_002950:PG0883|3end_hypothetical_protein_946562..946712_POSITIVE 403 209 161 121 78 NC_002950:PG0962|3end_prolyl-tRNA_synthetase_1022327..1022477_NEGATIVE 398 266 225 66 27 NC_002950:PG0523|3end_inositol-5-monophosphate_dehydrogenase_566898..567048_NEGATIVE 392 166 125 58 6 NC_002950:PG2097|3end_ribose-phosphate_pyrophosphokinase_2205521..2205671_NEGATIVE 390 635 591 103 55 NC_002950:PG0350|3end_internalin-related_protein_385356..385506_NEGATIVE 386 320 275 81 29 NC_002950:PG0508|3end_HAD-superfamily_subfamily_IB_hydrolase,_TIGR01490_548136..548286_NEGATIVE 385 620 574 148 102 NC_002950:PG2040|3end_DNA-binding_protein,_histone-like_family_2138398..2138548_NEGATIVE 381 206 161 63 21 NC_002950:PG0354|3end_hypothetical_protein_389131..389281_NEGATIVE 380 277 231 107 56 NC_002950:PG1972|3end_hemagglutinin_protein_HagB_2061203..2061353_POSITIVE 380 556 515 151 107 NC_002950:PG1953|3end_YitT_family_protein_2044589..2044739_POSITIVE 379 736 697 79 29 NC_002950:PG1942|3end_30S_ribosomal_protein_S12_2027946..2028096_NEGATIVE 379 650 602 76 20 NC_002950:PG1330|3end_large_conductance_mechanosensitive_channel_protein_1410165..1410315_POSITIVE 379 455 411 78 45 NC_002950:PG1155|3end_ADP-heptose--LPS_heptosyltransferase,_putative_1236831..1236981_POSITIVE 379 229 182 72 11 NC_002950:PG0928|3end_response_regulator_985062..985212_NEGATIVE 379 215 176 151 106 NC_002950:PG0195|3end_rubrerythrin_232704..232854_POSITIVE