Origin IGS: atttataaaagagataaagaattactagccttacggcctctgcgaggcttttgaaaaccagatgaaagtgaataactttgcattttggcatcaaaattcttgctgaatccaccctaagtgtgcaaaatatctctgtaatcttatccttggtaatcatatggtgtgtaattcgttatttttcaagaccaaaacacacaaagtaaccctgtaattcccaacttctataagacttttcttatcctgaactcacgtaattctttaatgcgaagcaaaagttgtccgaaagaaattttgtttccgtaaataaaagattcctgcaaagctgcatagtcgttcttccaatcctttatacattctacaggaggataaaactctatttttccggataatctttatcacagtcagcatagagaaccggacttacaagaccgaaaagcgtatatactccgaatacatcgacagaaatacaaaaacaagtcgtcattttccaccgataagaacgacattttacaaagaacagggacgagcctgccattttgccggggacgacgtatcgttccggttaggacgaccctccgtctgttttaggtcgacctgactttctgtcagggtcggcgtgtgtggtttattgtctcgtaatgtgcaggtaagaagaggg .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 ccctcttcttacctgcacattacgagacaataaaccacacacgccgaccctgacagaaagtcaggtcgacctaaaacagacggagggtcgtcctaaccggaacgatacgtcgtccccggcaaaatggcaggctcgtccctgttctttgtaaaatgtcgttcttatcggtggaaaatgacgacttgtttttgtatttctgtcgatgtattcggagtatatacgcttttcggtcttgtaagtccggttctctatgctgactgtgataaagattatccggaaaaatagagttttatcctcctgtagaatgtataaaggattggaagaacgactatgcagctttgcaggaatcttttatttacggaaacaaaatttctttcggacaacttttgcttcgcattaaagaattacgtgagttcaggataagaaaagtcttatagaagttgggaattacagggttactttgtgtgttttggtcttgaaaaataacgaattacacaccatatgattaccaaggataagattacagagatattttgcacacttagggtggattcagcaagaattttgatgccaaaatgcaaagttattcactttcatctggttttcaaaagcctcgcagaggccgtaaggctagtaattctttatctcttttataaat Mask Tandem Repeat Region ================================================ atttataaaagagataaagaattactagccttacggcctctgcgaggcttttgaaaaccagatgaaagtgaataactttgcattttggcatcaaaattcttgctgaatccaccctaagtgtgcaaaatatctctgtaatcttatccttggtaatcatatggtgtgtaattcgttatttttcaagaccaaaacacacaaagtaaccctgtaattcccaacttctataagacttttcttatcctgaactcacgtaattctttaatgcgaagcaaaagttgtccgaaagaaattttgtttccgtaaataaaagattcctgcaaagctgcatagtcgttcttccaatcctttatacattctacaggaggataaaactctatttttccggataatctttatcacagtcagcatagagaaccggacttacaagaccgaaaagcgtatatactccgaatacatcgacagaaatacaaaaacaagtcgtcattttccaccgataagaacgacattttacaaagaacagggacgagcctgccattttgccggggacgacgtatcgttccggttaggacgaccctccgtctgttttaggtcgacctgactttctgtcagggtcggcgtgtgtggtttattgtctcgtaatgtgcaggtaagaagaggg Find is-nt database================================================ Query_seq: PG1519:PG1521|PG1519:PG1521:hypothetical protein:O-succinylbenzoic acid--CoA ligase:-><-:1597486..1598143 658 atttataaaagagataaagaattactagccttacggcctctgcgaggcttttgaaaaccagatgaaagtgaataactttgcattttggcatcaaaattcttgctgaatccaccctaagtgtgcaaaatatctctgtaatcttatccttggtaatcatatggtgtgtaattcgttatttttcaagaccaaaacacacaaagtaaccctgtaattcccaacttctataagacttttcttatcctgaactcacgtaattctttaatgcgaagcaaaagttgtccgaaagaaattttgtttccgtaaataaaagattcctgcaaagctgcatagtcgttcttccaatcctttatacattctacaggaggataaaactctatttttccggataatctttatcacagtcagcatagagaaccggacttacaagaccgaaaagcgtatatactccgaatacatcgacagaaatacaaaaacaagtcgtcattttccaccgataagaacgacattttacaaagaacagggacgagcctgccattttgccggggacgacgtatcgttccggttaggacgaccctccgtctgttttaggtcgacctgactttctgtcagggtcggcgtgtgtggtttattgtctcgtaatgtgcaggtaagaagaggg Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PG1519:PG1521|PG1519:PG1521:hypothetical protein:O-succinylbenzoic acid--CoA ligase:-><-:1597486..1598143 658 atttataaaagagataaagaattactagccttacggcctctgcgaggcttttgaaaaccagatgaaagtgaataactttgcattttggcatcaaaattcttgctgaatccaccctaagtgtgcaaaatatctctgtaatcttatccttggtaatcatatggtgtgtaattcgttatttttcaagaccaaaacacacaaagtaaccctgtaattcccaacttctataagacttttcttatcctgaactcacgtaattctttaatgcgaagcaaaagttgtccgaaagaaattttgtttccgtaaataaaagattcctgcaaagctgcatagtcgttcttccaatcctttatacattctacaggaggataaaactctatttttccggataatctttatcacagtcagcatagagaaccggacttacaagaccgaaaagcgtatatactccgaatacatcgacagaaatacaaaaacaagtcgtcattttccaccgataagaacgacattttacaaagaacagggacgagcctgccattttgccggggacgacgtatcgttccggttaggacgaccctccgtctgttttaggtcgacctgactttctgtcagggtcggcgtgtgtggtttattgtctcgtaatgtgcaggtaagaagaggg Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PG1519:PG1521|PG1519:PG1521:hypothetical protein:O-succinylbenzoic acid--CoA ligase:-><-:1597486..1598143 658 atttataaaagagataaagaattactagccttacggcctctgcgaggcttttgaaaaccagatgaaagtgaataactttgcattttggcatcaaaattcttgctgaatccaccctaagtgtgcaaaatatctctgtaatcttatccttggtaatcatatggtgtgtaattcgttatttttcaagaccaaaacacacaaagtaaccctgtaattcccaacttctataagacttttcttatcctgaactcacgtaattctttaatgcgaagcaaaagttgtccgaaagaaattttgtttccgtaaataaaagattcctgcaaagctgcatagtcgttcttccaatcctttatacattctacaggaggataaaactctatttttccggataatctttatcacagtcagcatagagaaccggacttacaagaccgaaaagcgtatatactccgaatacatcgacagaaatacaaaaacaagtcgtcattttccaccgataagaacgacattttacaaagaacagggacgagcctgccattttgccggggacgacgtatcgttccggttaggacgaccctccgtctgttttaggtcgacctgactttctgtcagggtcggcgtgtgtggtttattgtctcgtaatgtgcaggtaagaagaggg Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 atttataaaagagataaagaattactagccttacggcctctgcgaggcttttgaaaaccagatgaaagtgaataactttgcattttggcatcaaaattcttgctgaatccaccctaagtgtgcaaaatatctctgtaatcttatccttggtaatcatatggtgtgtaattcgttatttttcaagaccaaaacacacaaagtaaccctgtaattcccaacttctataagacttttcttatcctgaactcacgtaattctttaatgcgaagcaaaagttgtccgaaagaaattttgtttccgtaaataaaagattcctgcaaagctgcatagtcgttcttccaatcctttatacattctacaggaggataaaactctatttttccggataatctttatcacagtcagcatagagaaccggacttacaagaccgaaaagcgtatatactccgaatacatcgacagaaatacaaaaacaagtcgtcattttccaccgataagaacgacattttacaaagaacagggacgagcctgccattttgccggggacgacgtatcgttccggttaggacgaccctccgtctgttttaggtcgacctgactttctgtcagggtcggcgtgtgtggtttattgtctcgtaatgtgcaggtaagaagaggg Predict ORF larger than 30AA ================================================ Protein_Len: 43 Strand: + Start: 72 End: 200 ....................................................................... M T L H F G I K I L A E S T L S V Q N I S V I L S L V I I W C V I R Y F S R P K H T K .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 34 Strand: + Start: 107 End: 208 .......................................................................................................... M H P K C A K Y L C N L I L G N H M V C N S L F F K T K T H K V T L .................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 42 Strand: + Start: 175 End: 300 .............................................................................................................................................................................. M F Q D Q N T Q S N P V I P N F Y K T F L I L N S R N S L M R S K S C P K E I L F P ...................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 37 Strand: + Start: 276 End: 386 ................................................................................................................................................................................................................................................................................... M S E R N F V S V N K R F L Q S C I V V L P I L Y T F Y R R I K L Y F S G ................................................................................................................................................................................................................................................................................ Protein_Len: 60 Strand: + Start: 376 End: 585 ....................................................................................................................................................................................................................................................................................................................................................................................... M F P D N L Y H S Q H R E P D L Q D R K A Y I L R I H R Q K Y K N K S S F S T D K N D I L Q R T G T S L P F C R G R R I ......................................................................... Protein_Len: 60 Strand: + Start: 311 End: 595 ...................................................................................................................................................................................................................................................................................................................... M P A K L H S R S S N P L Y I L Q E D K T L F F R I I F I T V S I E N R T Y K T E K R I Y S E Y I D R N T K T S R H F P ............................................................... Protein_Len: 33 Strand: - Start: 511 End: 609 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. L S C P R A Q W K A P S S T D N R N P R G E T Q K L D V Q S E T M ................................................. Protein_Len: 50 Strand: - Start: 405 End: 554 .................................................................................................................................................................................................................................................................................................................................................................................................................... C L S G S K C S R F A Y I S R I C R C F Y L F L D D N E V S L F S M K C L V P V L R G N Q R P R R M ........................................................................................................ Protein_Len: 53 Strand: - Start: 377 End: 535 ........................................................................................................................................................................................................................................................................................................................................................................................ K E P Y D K D C D A Y L V P S V L G F L T Y V G F V D V S I C F C T T M K W R Y S R C K V F F L S S G A M ........................................................................................................................... Protein_Len: 49 Strand: - Start: 262 End: 408 ..................................................................................................................................................................................................................................................................... H S A F T T R F F N Q K R L Y F I G A F S C L R E E L G K Y M R C S S L V R N K R I I K I V T L M .......................................................................................................................................................................................................................................................... Protein_Len: 35 Strand: - Start: 239 End: 343 .............................................................................................................................................................................................................................................. G S S V Y N K L A F C F N D S L F K T E T F L L N R C L Q M T T R G M ........................................................................................................................................................................................................................................................................................................................... Protein_Len: 51 Strand: - Start: 225 End: 377 ................................................................................................................................................................................................................................ L V K R I R F E R L E K I R L L L Q G F S I K N G Y I F S E Q L A A Y D N K W D K I C E V P P Y F E M ......................................................................................................................................................................................................................................................................................... Protein_Len: 56 Strand: - Start: 2 End: 169 . K Y F L Y L I V L R V A E A L S K F V L H F H I V K C K P M L I R A S D V R L T C F I E T I K D K T I M H H T M ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... atttataaaagagataaagaattactagccttacggcctctgcgaggcttttgaaaaccagatgaaagtgaataactttgcattttggcatcaaaattcttgctgaatccaccctaagtgtgcaaaatatctctgtaatcttatccttggtaatcatatggtgtgtaattcgttatttttcaagaccaaaacacacaaagtaaccctgtaattcccaacttctataagacttttcttatcctgaactcacgtaattctttaatgcgaagcaaaagttgtccgaaagaaattttgtttccgtaaataaaagattcctgcaaagctgcatagtcgttcttccaatcctttatacattctacaggaggataaaactctatttttccggataatctttatcacagtcagcatagagaaccggacttacaagaccgaaaagcgtatatactccgaatacatcgacagaaatacaaaaacaagtcgtcattttccaccgataagaacgacattttacaaagaacagggacgagcctgccattttgccggggacgacgtatcgttccggttaggacgaccctccgtctgttttaggtcgacctgactttctgtcagggtcggcgtgtgtggtttattgtctcgtaatgtgcaggtaagaagaggg Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ atttataaaagagataaagaattactagccttacggcctctgcgaggcttttgaaaaccagatgaaagtgaataactttgcattttggcatcaaaattcttgctgaatccaccctaagtgtgcaaaatatctctgtaatcttatccttggtaatcatatggtgtgtaattcgttatttttcaagaccaaaacacacaaagtaaccctgtaattcccaacttctataagacttttcttatcctgaactcacgtaattctttaatgcgaagcaaaagttgtccgaaagaaattttgtttccgtaaataaaagattcctgcaaagctgcatagtcgttcttccaatcctttatacattctacaggaggataaaactctatttttccggataatctttatcacagtcagcatagagaaccggacttacaagaccgaaaagcgtatatactccgaatacatcgacagaaatacaaaaacaagtcgtcattttccaccgataagaacgacattttacaaagaacagggacgagcctgccattttgccggggacgacgtatcgttccggttaggacgaccctccgtctgttttaggtcgacctgactttctgtcagggtcggcgtgtgtggtttattgtctcgtaatgtgcaggtaagaagaggg Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 51 HP_score: -4.6 Tail_Score: -3.1355 Start: 586 End: 619 Full_Region: ACCCTCCGTCTGTTT TAGGTCGACCTGAC TTTCT GTCAGGGTCGGCGTG TGTGGTTTATTGTCT .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGGTCGACCTGACTTTCTGTCAGGGTCGGCGTG....................................... TransTerm Strand: + Conf: 53 HP_score: -5.0 Tail_Score: -3.11256 Start: 588 End: 617 Full_Region: CCTCCGTCTGTTTTA GGTCGACCTGAC TTTCT GTCAGGGTCGGCG TGTGTGGTTTATTGT ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCGACCTGACTTTCTGTCAGGGTCGGCG......................................... Find igs database================================================ Query_seq: PG1519:PG1521|PG1519:PG1521:hypothetical protein:O-succinylbenzoic acid--CoA ligase:-><-:1597486..1598143 658 atttataaaagagataaagaattactagccttacggcctctgcgaggcttttgaaaaccagatgaaagtgaataactttgcattttggcatcaaaattcttgctgaatccaccctaagtgtgcaaaatatctctgtaatcttatccttggtaatcatatggtgtgtaattcgttatttttcaagaccaaaacacacaaagtaaccctgtaattcccaacttctataagacttttcttatcctgaactcacgtaattctttaatgcgaagcaaaagttgtccgaaagaaattttgtttccgtaaataaaagattcctgcaaagctgcatagtcgttcttccaatcctttatacattctacaggaggataaaactctatttttccggataatctttatcacagtcagcatagagaaccggacttacaagaccgaaaagcgtatatactccgaatacatcgacagaaatacaaaaacaagtcgtcattttccaccgataagaacgacattttacaaagaacagggacgagcctgccattttgccggggacgacgtatcgttccggttaggacgaccctccgtctgttttaggtcgacctgactttctgtcagggtcggcgtgtgtggtttattgtctcgtaatgtgcaggtaagaagaggg Intra-Species Hit: Count: 3 Min: 1 Max: 658 Len: 658 Subject: NC_002950_PG1519_PG1521|hypothetical protein:O-succinylbenzoic acid--CoA ligase|POSITIVE:NEGATIVE|[1597486,1598143]|658 HSP 1 e-value: 0.0 bit: 1304.0 Len: 658 Query Start:1 Query End:658 Subject Strand: POSITIVE Subject Start: 1 Subject End: 658 atttataaaagagataaagaattactagccttacggcctctgcgaggcttttgaaaaccagatgaaagtgaataactttgcattttggcatcaaaattcttgctgaatccaccctaagtgtgcaaaatatctctgtaatcttatccttggtaatcatatggtgtgtaattcgttatttttcaagaccaaaacacacaaagtaaccctgtaattcccaacttctataagacttttcttatcctgaactcacgtaattctttaatgcgaagcaaaagttgtccgaaagaaattttgtttccgtaaataaaagattcctgcaaagctgcatagtcgttcttccaatcctttatacattctacaggaggataaaactctatttttccggataatctttatcacagtcagcatagagaaccggacttacaagaccgaaaagcgtatatactccgaatacatcgacagaaatacaaaaacaagtcgtcattttccaccgataagaacgacattttacaaagaacagggacgagcctgccattttgccggggacgacgtatcgttccggttaggacgaccctccgtctgttttaggtcgacctgactttctgtcagggtcggcgtgtgtggtttattgtctcgtaatgtgcaggtaagaagaggg atttataaaagagataaagaattactagccttacggcctctgcgaggcttttgaaaaccagatgaaagtgaataactttgcattttggcatcaaaattcttgctgaatccaccctaagtgtgcaaaatatctctgtaatcttatccttggtaatcatatggtgtgtaattcgttatttttcaagaccaaaacacacaaagtaaccctgtaattcccaacttctataagacttttcttatcctgaactcacgtaattctttaatgcgaagcaaaagttgtccgaaagaaattttgtttccgtaaataaaagattcctgcaaagctgcatagtcgttcttccaatcctttatacattctacaggaggataaaactctatttttccggataatctttatcacagtcagcatagagaaccggacttacaagaccgaaaagcgtatatactccgaatacatcgacagaaatacaaaaacaagtcgtcattttccaccgataagaacgacattttacaaagaacagggacgagcctgccattttgccggggacgacgtatcgttccggttaggacgaccctccgtctgttttaggtcgacctgactttctgtcagggtcggcgtgtgtggtttattgtctcgtaatgtgcaggtaagaagaggg Subject: NC_002950_PG1510_PG1511|hypothetical protein:hypothetical protein|NEGATIVE:POSITIVE|[1587627,1587748]|122 HSP 1 e-value: 2.0E-39 bit: 165.0 Len: 110 Query Start:328 Query End:437 Subject Strand: POSITIVE Subject Start: 8 Subject End: 118 .......................................................................................................................................................................................................................................................................................................................................tagtcgttcttccaatcctttatacattctacaggaggataaaactctatttt-tccggataatctttatcacagtcagcatagagaaccggacttacaagaccgaaaagc............................................................................................................................................................................................................................. .......................................................................................................................................................................................................................................................................................................................................tagtcgttctcccaatcctttatacattctacaggaggatagaactctattttgtccggataatctttatcacagtcagcatagagaaccgaacttaatagaccgaaaagc............................................................................................................................................................................................................................. Subject: NC_002950_PG1496_PG1497|hypothetical protein:DNA-binding protein, histone-like family|POSITIVE:POSITIVE|[1573758,1574224]|467 HSP 1 e-value: 7.0E-9 bit: 63.9 Len: 56 Query Start:589 Query End:644 Subject Strand: NEGATIVE Subject Start: 117 Subject End: 172 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gtcgacctgactttctgtcagggtcggcgtgtgtggtttattgtctcgtaatgtgc.............. ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gtcgacctgactttctgtcagggtcgacgtatgcggtttattccctcgtagtgtgc.............. HSP 2 e-value: 1.0E-7 bit: 60.0 Len: 54 Query Start:543 Query End:596 Subject Strand: NEGATIVE Subject Start: 231 Subject End: 284 ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gggacgacgtatcgttccggttaggacgaccctccgtctgttttaggtcgacct.............................................................. ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gggacgacacatcgctccggttaggtcgaccttccgtccgttttaggtcgacct.............................................................. HSP 3 e-value: 4.0E-7 bit: 58.0 Len: 45 Query Start:436 Query End:480 Subject Strand: NEGATIVE Subject Start: 346 Subject End: 390 ...................................................................................................................................................................................................................................................................................................................................................................................................................................................gcgtatatactccgaatacatcgacagaaatacaaaaacaagtcg.................................................................................................................................................................................. ...................................................................................................................................................................................................................................................................................................................................................................................................................................................gcgtatatactcctaatacatcgacaaaagtacaaaaacatgtcg.................................................................................................................................................................................. Inter-species Hit: Count: 1 Min: 535 Max: 646 Len: 112 Subject: tfor_TF0862_TF0864|conserved hypothetical protein fragment:O-succinylbenzoate--CoA ligase|POSITIVE:POSITIVE|[914520,914709]|190 HSP 1 e-value: 1.0E-19 bit: 99.6 Len: 58 Query Start:535 Query End:592 Subject Strand: POSITIVE Subject Start: 9 Subject End: 66 ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttttgccggggacgacgtatcgttccggttaggacgaccctccgtctgttttaggtcg.................................................................. ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttttgccgaggacgacgtattgttccggttaggacgaccctccgtctgttttaggtcg.................................................................. HSP 2 e-value: 7.0E-18 bit: 93.7 Len: 63 Query Start:584 Query End:646 Subject Strand: POSITIVE Subject Start: 124 Subject End: 186 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tttaggtcgacctgactttctgtcagggtcggcgtgtgtggtttattgtctcgtaatgtgcag............ .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tttaggtcgaccttactttttgtcggggtcggcgtgtgtggtttattgtctcgtagtgtgcag............ Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UUUUGCCGGGGACGACGUAUCGUUCCGGUUAGGACGACCCUCCGUCUGUUUUAGGUCGACCUGACUUUCUGUCAGGGUCGGCGUGUGUGGUUUAUUGUCUCGUAAUGUGCAG ...(((..(((((((....))))))).((((.((.(((.......(..(..((.(((((((((((.....)))).))))))).)).)..)......))))).))))..))). (-37.12) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ CUGCACAUUACGAGACAAUAAACCACACACGCCGACCCUGACAGAAAGUCAGGUCGACCUAAAACAGACGGAGGGUCGUCCUAACCGGAACGAUACGUCGUCCCCGGCAAAA ..............................((((..((((((.....)))))).............((((..(..((((((.....)).))))..)..))))..)))).... (-31.30) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 396 109 69 39 1 NC_002950:PG0088|5end_peptidase,_M16_family_103275..103505_POSITIVE 385 50 1 219 168 NC_002950:PG1366|5end_UDP-N-acetylglucosamine_1-carboxyvinyltransferase_1447380..1447610_NEGATIVE 377 45 6 231 191 NC_002950:PG1361|5end_dipeptidyl_aminopeptidase_IV,_putative_1442108..1442338_NEGATIVE 374 47 4 72 22 NC_002950:PG0897|5end_alpha-amylase_family_protein_962472..962702_NEGATIVE 370 45 4 207 160 NC_002950:PG0468|5end_mannose-6-phosphate_isomerase,_class_I_511384..511614_NEGATIVE 368 110 68 226 183 NC_002950:PG2065|5end_conserved_hypothetical_protein_TIGR00048_2161000..2161230_POSITIVE 367 49 2 204 147 NC_002950:PG1790|5end_hypothetical_protein_1880954..1881184_NEGATIVE 363 48 2 197 152 NC_002950:PG1760|5end_ABC_transporter,_ATP-binding_protein_1846507..1846737_POSITIVE 360 50 1 84 12 NC_002950:PG1166|5end_hypothetical_protein_1248443..1248673_NEGATIVE 360 100 56 96 49 NC_002950:PG0418|5end_ATP-dependent_Clp_protease,_proteolytic_subunit_459329..459559_NEGATIVE 359 45 1 64 6 NC_002950:PG1487|5end_hypothetical_protein_1561468..1561698_POSITIVE 359 37 3 75 34 NC_002950:PG0987|5end_hypothetical_protein_1048002..1048232_POSITIVE 358 90 54 44 5 NC_002950:PG1778|5end_hypothetical_protein_1867054..1867284_POSITIVE 356 90 41 186 146 NC_002950:PG0329|5end_formiminotransferase-cyclodeaminase-related_protein_364429..364659_NEGATIVE 355 50 5 142 98 NC_002950:PG0854|5end_hypothetical_protein_914870..915100_POSITIVE 355 48 5 222 161 NC_002950:PG0333|5end_hypothetical_protein_367823..368053_POSITIVE 354 100 54 96 43 NC_002950:PG0646|5end_iron_compound_ABC_transporter,_ATP-binding_protein_699071..699301_NEGATIVE 352 50 4 51 1 NC_002950:PG1998|5end_polyprenyl_synthetase_2088029..2088259_NEGATIVE 352 90 42 121 58 NC_002950:PG1375|5end_hypothetical_protein_1456553..1456783_POSITIVE 348 50 8 164 124 NC_002950:PG0094|5end_outer_membrane_efflux_protein,_putative_111193..111423_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 401 49 5 123 80 NC_002950:PG1118|3end_clpB_protein_1192083..1192233_NEGATIVE 384 90 41 79 35 NC_002950:PG0332|3end_transcription_termination_factor_Rho_367675..367825_POSITIVE 360 89 41 130 79 NC_002950:PG1382|3end_hypothetical_protein_1462550..1462700_POSITIVE 359 37 3 59 18 NC_002950:PG0986|3end_hypothetical_protein_1048066..1048216_POSITIVE 356 90 41 137 97 NC_002950:PG0330|3end_DNA-binding_protein,_histone-like_family_364478..364628_NEGATIVE 355 50 5 141 97 NC_002950:PG2152|3end_DNA-binding_protein,_histone-like_family_2260315..2260465_POSITIVE 355 50 5 141 97 NC_002950:PG0853|3end_DNA-binding_protein,_histone-like_family_914949..915099_POSITIVE 354 100 54 88 35 NC_002950:PG0647|3end_iron_compound_ABC_transporter,_permease_protein_699079..699229_NEGATIVE 354 48 1 60 5 NC_002950:PG0507|3end_hypothetical_protein_548190..548340_POSITIVE 348 80 31 136 95 NC_002950:PG1497|3end_DNA-binding_protein,_histone-like_family_1574635..1574785_POSITIVE 342 47 2 148 103 NC_002950:PG2126|3end_conserved_hypothetical_protein_TIGR00044_2232438..2232588_NEGATIVE 341 49 1 108 69 NC_002950:PG1855|3end_carboxyl-terminal_protease_1953842..1953992_NEGATIVE 340 78 31 68 24 NC_002950:PG1910|3end_ribosomal_protein_L17_2010282..2010432_NEGATIVE 340 47 7 119 81 NC_002950:PG0033|3end_RmuC_domain_protein_40242..40392_NEGATIVE 339 49 5 135 73 NC_002950:PG1948|3end_lipoprotein,_putative_2037940..2038090_POSITIVE 339 98 54 54 7 NC_002950:PG1616|3end_hypothetical_protein_1696558..1696708_NEGATIVE 338 94 54 81 24 NC_002950:PG0844|3end_hypothetical_protein_905461..905611_POSITIVE 336 48 4 58 10 NC_002950:PG1726|3end_PDZ_domain_protein_1816779..1816929_POSITIVE 329 90 43 149 81 NC_002950:PG0215|3end_hypothetical_protein_252028..252178_POSITIVE 328 49 7 130 79 NC_002950:PG0978|3end_shikimate_5-dehydrogenase_1040862..1041012_POSITIVE