Origin IGS: agaatacagaatcaatctctctggatgcggcaactcgtcatattttttgttttgtgaataacgccccgaaggcttgcatagcccttcggggtgtctttttaagactttactcgtccgcacactacgagggaataaaccgcatacgtcgaccctgacagaaagtcaggtcgacataaccggccgtttaggtcgaccttacggagcaaataggtcgtccttacagagcgtttaggtcgacctaaaacggacggaaggtcgacctaaccggagcgatgtgtcgtccctcgcaaaacagatgggtcgtcatcgcctgtgtaaaatatcgttctcttgagtaggaaatatcgacatgtttttgtacttttgtcgatgtattaggagtatatacgccggcggaggtcaaagtcccctcgcttctgccggccgtcatcagacaacgaggggcttcatttaacaacaagaaagac .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 gtctttcttgttgttaaatgaagcccctcgttgtctgatgacggccggcagaagcgaggggactttgacctccgccggcgtatatactcctaatacatcgacaaaagtacaaaaacatgtcgatatttcctactcaagagaacgatattttacacaggcgatgacgacccatctgttttgcgagggacgacacatcgctccggttaggtcgaccttccgtccgttttaggtcgacctaaacgctctgtaaggacgacctatttgctccgtaaggtcgacctaaacggccggttatgtcgacctgactttctgtcagggtcgacgtatgcggtttattccctcgtagtgtgcggacgagtaaagtcttaaaaagacaccccgaagggctatgcaagccttcggggcgttattcacaaaacaaaaaatatgacgagttgccgcatccagagagattgattctgtattct Mask Tandem Repeat Region ================================================ agaatacagaatcaatctctctggatgcggcaactcgtcatattttttgttttgtgaataacgccccgaaggcttgcatagcccttcggggtgtctttttaagactttactcgtccgcacactacgagggaataaaccgcatacgtcgaccctgacagaaagtcaggtcgacataaccggccgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaacggacggaaggtcgacctaaccggagcgatgtgtcgtccctcgcaaaacagatgggtcgtcatcgcctgtgtaaaatatcgttctcttgagtaggaaatatcgacatgtttttgtacttttgtcgatgtattaggagtatatacgccggcggaggtcaaagtcccctcgcttctgccggccgtcatcagacaacgaggggcttcatttaacaacaagaaagac Find is-nt database================================================ Query_seq: PG1496:PG1497|PG1496:PG1497:hypothetical protein:DNA-binding protein, histone-like family:->->:1573758..1574224 467 agaatacagaatcaatctctctggatgcggcaactcgtcatattttttgttttgtgaataacgccccgaaggcttgcatagcccttcggggtgtctttttaagactttactcgtccgcacactacgagggaataaaccgcatacgtcgaccctgacagaaagtcaggtcgacataaccggccgtttaggtcgaccttacggagcaaataggtcgtccttacagagcgtttaggtcgacctaaaacggacggaaggtcgacctaaccggagcgatgtgtcgtccctcgcaaaacagatgggtcgtcatcgcctgtgtaaaatatcgttctcttgagtaggaaatatcgacatgtttttgtacttttgtcgatgtattaggagtatatacgccggcggaggtcaaagtcccctcgcttctgccggccgtcatcagacaacgaggggcttcatttaacaacaagaaagac Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PG1496:PG1497|PG1496:PG1497:hypothetical protein:DNA-binding protein, histone-like family:->->:1573758..1574224 467 agaatacagaatcaatctctctggatgcggcaactcgtcatattttttgttttgtgaataacgccccgaaggcttgcatagcccttcggggtgtctttttaagactttactcgtccgcacactacgagggaataaaccgcatacgtcgaccctgacagaaagtcaggtcgacataaccggccgtttaggtcgaccttacggagcaaataggtcgtccttacagagcgtttaggtcgacctaaaacggacggaaggtcgacctaaccggagcgatgtgtcgtccctcgcaaaacagatgggtcgtcatcgcctgtgtaaaatatcgttctcttgagtaggaaatatcgacatgtttttgtacttttgtcgatgtattaggagtatatacgccggcggaggtcaaagtcccctcgcttctgccggccgtcatcagacaacgaggggcttcatttaacaacaagaaagac Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PG1496:PG1497|PG1496:PG1497:hypothetical protein:DNA-binding protein, histone-like family:->->:1573758..1574224 467 agaatacagaatcaatctctctggatgcggcaactcgtcatattttttgttttgtgaataacgccccgaaggcttgcatagcccttcggggtgtctttttaagactttactcgtccgcacactacgagggaataaaccgcatacgtcgaccctgacagaaagtcaggtcgacataaccggccgtttaggtcgaccttacggagcaaataggtcgtccttacagagcgtttaggtcgacctaaaacggacggaaggtcgacctaaccggagcgatgtgtcgtccctcgcaaaacagatgggtcgtcatcgcctgtgtaaaatatcgttctcttgagtaggaaatatcgacatgtttttgtacttttgtcgatgtattaggagtatatacgccggcggaggtcaaagtcccctcgcttctgccggccgtcatcagacaacgaggggcttcatttaacaacaagaaagac Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 agaatacagaatcaatctctctggatgcggcaactcgtcatattttttgttttgtgaataacgccccgaaggcttgcatagcccttcggggtgtctttttaagactttactcgtccgcacactacgagggaataaaccgcatacgtcgaccctgacagaaagtcaggtcgacataaccggccgtttaggtcgaccttacggagcaaataggtcgtccttacagagcgtttaggtcgacctaaaacggacggaaggtcgacctaaccggagcgatgtgtcgtccctcgcaaaacagatgggtcgtcatcgcctgtgtaaaatatcgttctcttgagtaggaaatatcgacatgtttttgtacttttgtcgatgtattaggagtatatacgccggcggaggtcaaagtcccctcgcttctgccggccgtcatcagacaacgaggggcttcatttaacaacaagaaagac Predict ORF larger than 30AA ================================================ Protein_Len: 46 Strand: + Start: 15 End: 152 .............. M S L D A A T R H I F C F V N N A P K A C I A L R G V F L R L Y S S A H Y E G I N R I R R P ........................................................................................................................................................................................................................................................................................................................... Protein_Len: 52 Strand: + Start: 74 End: 229 ......................................................................... M H S P S G C L F K T L L V R T L R G N K P H T S T L T E S Q V D I T G R L G R P Y G A N R S S L Q S V .............................................................................................................................................................................................................................................. Protein_Len: 36 Strand: + Start: 344 End: 451 ....................................................................................................................................................................................................................................................................................................................................................... M D M F L Y F C R C I R S I Y A G G G Q S P L A S A G R H Q T T R G F I ................ Protein_Len: 42 Strand: + Start: 342 End: 467 ..................................................................................................................................................................................................................................................................................................................................................... M S T C F C T F V D V L G V Y T P A E V K V P S L L P A V I R Q R G A S F N N K K D Protein_Len: 36 Strand: - Start: 264 End: 371 ....................................................................................................................................................................................................................................................................... G S R H T T G R L V S P D D D G T Y F I T R K L L F Y R C T K T S K D M ................................................................................................ Protein_Len: 60 Strand: - Start: 242 End: 460 ................................................................................................................................................................................................................................................. G E C F L H T T M A Q T F Y R E R S Y S I D V H K Q V K T S T N P T Y V G A S T L T G E S R G A T M L C R P A E N L L M ....... Protein_Len: 35 Strand: - Start: 102 End: 206 ..................................................................................................... S K V R G C V V L S Y V A Y T S G S L F D P R C L R G N L D V K R L M ..................................................................................................................................................................................................................................................................... Protein_Len: 40 Strand: - Start: 1 End: 120 S Y L I L R E P H P L E D Y K K N Q S Y R G S P K C L G E P H R K L V K S T R M ........................................................................................................................................................................................................................................................................................................................................................... agaatacagaatcaatctctctggatgcggcaactcgtcatattttttgttttgtgaataacgccccgaaggcttgcatagcccttcggggtgtctttttaagactttactcgtccgcacactacgagggaataaaccgcatacgtcgaccctgacagaaagtcaggtcgacataaccggccgtttaggtcgaccttacggagcaaataggtcgtccttacagagcgtttaggtcgacctaaaacggacggaaggtcgacctaaccggagcgatgtgtcgtccctcgcaaaacagatgggtcgtcatcgcctgtgtaaaatatcgttctcttgagtaggaaatatcgacatgtttttgtacttttgtcgatgtattaggagtatatacgccggcggaggtcaaagtcccctcgcttctgccggccgtcatcagacaacgaggggcttcatttaacaacaagaaagac Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ agaatacagaatcaatctctctggatgcggcaactcgtcatattttttgttttgtgaataacgccccgaaggcttgcatagcccttcggggtgtctttttaagactttactcgtccgcacactacgagggaataaaccgcatacgtcgaccctgacagaaagtcaggtcgacataaccggccgtttaggtcgaccttacggagcaaataggtcgtccttacagagcgtttaggtcgacctaaaacggacggaaggtcgacctaaccggagcgatgtgtcgtccctcgcaaaacagatgggtcgtcatcgcctgtgtaaaatatcgttctcttgagtaggaaatatcgacatgtttttgtacttttgtcgatgtattaggagtatatacgccggcggaggtcaaagtcccctcgcttctgccggccgtcatcagacaacgaggggcttcatttaacaacaagaaagac Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 100 HP_score: -10.5 Tail_Score: -4.64657 Start: 60 End: 95 Full_Region: TTTTGTTTTGTGAAT AACGCCCCGAAGGCT TGCAT AGCCCTTCGGGGTGTC TTTTTAAGACTTTAC ...........................................................AACGCCCCGAAGGCTTGCATAGCCCTTCGGGGTGTC.................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 87 HP_score: -13.1 Tail_Score: -3.9318 Start: 62 End: 93 Full_Region: TTGTTTTGTGAATAA CGCCCCGAAGGCT TGCAT AGCCCTTCGGGGTG TCTTTTTAAGACTTT .............................................................CGCCCCGAAGGCTTGCATAGCCCTTCGGGGTG...................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 77 HP_score: -10.9 Tail_Score: -3.61398 Start: 62 End: 93 Full_Region: aaagtcttaaaaaga caccccgaagggct atgca agccttcggggcg ttattcacaaaacaa .............................................................caccccgaagggctatgcaagccttcggggcg...................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 91 HP_score: -11.1 Tail_Score: -4.21974 Start: 137 End: 180 Full_Region: ggtcgacctaaacgg ccggttatgtcgacctgac tttct gtcagggtcgacgtatgcgg tttattccctcgtag ........................................................................................................................................ccggttatgtcgacctgactttctgtcagggtcgacgtatgcgg............................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 80 HP_score: -9.9 Tail_Score: -4.04206 Start: 162 End: 199 Full_Region: cgacctatttgctcc gtaaggtcgacctaaac ggcc ggttatgtcgacctgac tttctgtcagggtcg .................................................................................................................................................................gtaaggtcgacctaaacggccggttatgtcgacctgac............................................................................................................................................................................................................................................................................ TransTerm Strand: - Conf: 54 HP_score: -6.8 Tail_Score: -2.87132 Start: 225 End: 268 Full_Region: ggacgacacatcgct ccggttaggtcgacct tccgtccgtttt aggtcgacctaaacgc tctgtaaggacgacc ................................................................................................................................................................................................................................ccggttaggtcgaccttccgtccgttttaggtcgacctaaacgc....................................................................................................................................................................................................... Find igs database================================================ Query_seq: PG1496:PG1497|PG1496:PG1497:hypothetical protein:DNA-binding protein, histone-like family:->->:1573758..1574224 467 agaatacagaatcaatctctctggatgcggcaactcgtcatattttttgttttgtgaataacgccccgaaggcttgcatagcccttcggggtgtctttttaagactttactcgtccgcacactacgagggaataaaccgcatacgtcgaccctgacagaaagtcaggtcgacataaccggccgtttaggtcgaccttacggagcaaataggtcgtccttacagagcgtttaggtcgacctaaaacggacggaaggtcgacctaaccggagcgatgtgtcgtccctcgcaaaacagatgggtcgtcatcgcctgtgtaaaatatcgttctcttgagtaggaaatatcgacatgtttttgtacttttgtcgatgtattaggagtatatacgccggcggaggtcaaagtcccctcgcttctgccggccgtcatcagacaacgaggggcttcatttaacaacaagaaagac Intra-Species Hit: Count: 3 Min: 1 Max: 467 Len: 467 Subject: NC_002950_PG1496_PG1497|hypothetical protein:DNA-binding protein, histone-like family|POSITIVE:POSITIVE|[1573758,1574224]|467 HSP 1 e-value: 0.0 bit: 926.0 Len: 467 Query Start:1 Query End:467 Subject Strand: POSITIVE Subject Start: 1 Subject End: 467 agaatacagaatcaatctctctggatgcggcaactcgtcatattttttgttttgtgaataacgccccgaaggcttgcatagcccttcggggtgtctttttaagactttactcgtccgcacactacgagggaataaaccgcatacgtcgaccctgacagaaagtcaggtcgacataaccggccgtttaggtcgaccttacggagcaaataggtcgtccttacagagcgtttaggtcgacctaaaacggacggaaggtcgacctaaccggagcgatgtgtcgtccctcgcaaaacagatgggtcgtcatcgcctgtgtaaaatatcgttctcttgagtaggaaatatcgacatgtttttgtacttttgtcgatgtattaggagtatatacgccggcggaggtcaaagtcccctcgcttctgccggccgtcatcagacaacgaggggcttcatttaacaacaagaaagac agaatacagaatcaatctctctggatgcggcaactcgtcatattttttgttttgtgaataacgccccgaaggcttgcatagcccttcggggtgtctttttaagactttactcgtccgcacactacgagggaataaaccgcatacgtcgaccctgacagaaagtcaggtcgacataaccggccgtttaggtcgaccttacggagcaaataggtcgtccttacagagcgtttaggtcgacctaaaacggacggaaggtcgacctaaccggagcgatgtgtcgtccctcgcaaaacagatgggtcgtcatcgcctgtgtaaaatatcgttctcttgagtaggaaatatcgacatgtttttgtacttttgtcgatgtattaggagtatatacgccggcggaggtcaaagtcccctcgcttctgccggccgtcatcagacaacgaggggcttcatttaacaacaagaaagac Subject: NC_002950_PG0665_PG0668|beta-galactosidase:TonB-dependent receptor|POSITIVE:POSITIVE|[715306,717590]|2285 HSP 1 e-value: 4.0E-65 bit: 250.0 Len: 162 Query Start:110 Query End:271 Subject Strand: NEGATIVE Subject Start: 1427 Subject End: 1588 .............................................................................................................ctcgtccgcacactacgagggaataaaccgcatacgtcgaccctgacagaaagtcaggtcgacataaccggccgtttaggtcgaccttacggagcaaataggtcgtccttacagagcgtttaggtcgacctaaaacggacggaaggtcgacctaaccggagc.................................................................................................................................................................................................... .............................................................................................................ctcgtccgcacactacaagggaataaaccgcatacgtcgaccctgacaagaagtcaggtcgacctaaccgagcgtttaggtcgaccttgcggagcaaataggtcgtccttacagagcgattaggtcgacctaaaacggacggaaggtcgtcctaaccggagc.................................................................................................................................................................................................... Subject: NC_002950_PG1519_PG1521|hypothetical protein:O-succinylbenzoic acid--CoA ligase|POSITIVE:NEGATIVE|[1597486,1598143]|658 HSP 1 e-value: 5.0E-9 bit: 63.9 Len: 56 Query Start:117 Query End:172 Subject Strand: NEGATIVE Subject Start: 589 Subject End: 644 ....................................................................................................................gcacactacgagggaataaaccgcatacgtcgaccctgacagaaagtcaggtcgac....................................................................................................................................................................................................................................................................................................... ....................................................................................................................gcacattacgagacaataaaccacacacgccgaccctgacagaaagtcaggtcgac....................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 7.0E-8 bit: 60.0 Len: 54 Query Start:231 Query End:284 Subject Strand: NEGATIVE Subject Start: 543 Subject End: 596 ......................................................................................................................................................................................................................................aggtcgacctaaaacggacggaaggtcgacctaaccggagcgatgtgtcgtccc....................................................................................................................................................................................... ......................................................................................................................................................................................................................................aggtcgacctaaaacagacggagggtcgtcctaaccggaacgatacgtcgtccc....................................................................................................................................................................................... HSP 3 e-value: 3.0E-7 bit: 58.0 Len: 45 Query Start:346 Query End:390 Subject Strand: NEGATIVE Subject Start: 436 Subject End: 480 .........................................................................................................................................................................................................................................................................................................................................................cgacatgtttttgtacttttgtcgatgtattaggagtatatacgc............................................................................. .........................................................................................................................................................................................................................................................................................................................................................cgacttgtttttgtatttctgtcgatgtattcggagtatatacgc............................................................................. Inter-species Hit: Count: 2 Min: 117 Max: 272 Len: 156 Subject: tfor_TF0883_TF0884|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[937533,937742]|210 HSP 1 e-value: 1.0E-68 bit: 262.0 Len: 152 Query Start:121 Query End:272 Subject Strand: NEGATIVE Subject Start: 59 Subject End: 210 ........................................................................................................................actacgagggaataaaccgcatacgtcgaccctgacagaaagtcaggtcgacataaccggccgtttaggtcgaccttacggagcaaataggtcgtccttacagagcgtttaggtcgacctaaaacggacggaaggtcgacctaaccggagcg................................................................................................................................................................................................... ........................................................................................................................actacgagggaataaaccgcatacgtcgaccctgacagaaagtcaggtcgacctaaccgagcgtttaggtcgaccttacggagcaaataggtcgtccttacagagcggttaggtcgacctaaaacggacggaaggtcgtcctaaccggagcg................................................................................................................................................................................................... Subject: tfor_TF0862_TF0864|conserved hypothetical protein fragment:O-succinylbenzoate--CoA ligase|POSITIVE:POSITIVE|[914520,914709]|190 HSP 1 e-value: 2.0E-26 bit: 121.0 Len: 153 Query Start:117 Query End:269 Subject Strand: NEGATIVE Subject Start: 32 Subject End: 184 ....................................................................................................................gcacactacgagggaataaaccgcatacgtcgaccctgacagaaagtcaggtcgacataaccggccgtttaggtcgaccttacggagcaaataggtcgtccttacagagcgtttaggtcgacctaaaacggacggaaggtcgacctaaccgga...................................................................................................................................................................................................... ....................................................................................................................gcacactacgagacaataaaccacacacgccgaccccgacaaaaagtaaggtcgacctaaacggccggtaaggtcgaccttgcggagcatttaggtcgacctaacagaacgattaggacgacctaaaacagacggagggtcgtcctaaccgga...................................................................................................................................................................................................... HSP 2 e-value: 5.0E-6 bit: 54.0 Len: 35 Query Start:165 Query End:199 Subject Strand: POSITIVE Subject Start: 105 Subject End: 139 ....................................................................................................................................................................aggtcgacataaccggccgtttaggtcgaccttac............................................................................................................................................................................................................................................................................ ....................................................................................................................................................................aggtcgaccttaccggccgtttaggtcgaccttac............................................................................................................................................................................................................................................................................ Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ GCACACUACGAGGGAAUAAACCGCAUACGUCGACCCUGACAGAAAGUCAGGUCGACAUAACCGGCCGUUUAGGUCGACCUUACGGAGCAAAUAGGUCGUCCUUACAGAGCGUUUAGGUCGACCUAAAACGGACGGAAGGUCGACCUAACCGGAGCG ((......((.((.......))......(((((((.((((.....))))))))))).....)).(((.(((((((((((((.((.......(((((((.(((.((.....))..))).))))))).......)).))))))))))))).))).)). (-67.74) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ CGCUCCGGUUAGGUCGACCUUCCGUCCGUUUUAGGUCGACCUAAACGCUCUGUAAGGACGACCUAUUUGCUCCGUAAGGUCGACCUAAACGGCCGGUUAUGUCGACCUGACUUUCUGUCAGGGUCGACGUAUGCGGUUUAUUCCCUCGUAGUGUGC ((((.((.(((((((((((((.((...((..(((((((.(((............))).)))))))...))..)).)))))))))))))..(((((..((((((((((((((.....)))).))))))))))..)))))........)).))))... (-69.10) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 386 88 45 202 161 NC_002950:PG1125|5end_hypothetical_protein_1201727..1201957_NEGATIVE 367 58 14 135 72 NC_002950:PG2220|5end_hypothetical_protein_2334935..2335165_POSITIVE 353 109 64 219 176 NC_002950:PG2101|5end_hypothetical_protein_2211273..2211503_NEGATIVE 348 99 51 84 42 NC_002950:PG0802|5end_alpha_keto_acid_dehydrogenase_complex,_E3_component,_lipoamide_dehydrogenase_859722..859952_NEGATIVE 344 69 21 66 27 NC_002950:PG1486|5end_conjugative_transposon_protein_TraA_1561166..1561396_NEGATIVE 343 110 63 82 41 NC_002950:PG0937|5end_hypothetical_protein_997194..997424_NEGATIVE 341 80 31 62 12 NC_002950:PG1576|5end_L-aspartate_oxidase_1653016..1653246_POSITIVE 336 79 31 65 23 NC_002950:PG2146|5end_hypothetical_protein_2253815..2254045_POSITIVE 334 136 93 63 13 NC_002950:PG1317|5end_hypothetical_protein_1397154..1397384_NEGATIVE 333 98 57 62 26 NC_002950:PG2038|5end_N-acetylmuramoyl-L-alanine_amidase,_putative_2138207..2138437_NEGATIVE 330 50 1 110 68 NC_002950:PG2162|5end_lipid_A_disaccharide_synthase_2268764..2268994_NEGATIVE 329 120 71 82 35 NC_002950:PG1029|5end_hypothetical_protein_1091080..1091310_POSITIVE 328 107 62 55 9 NC_002950:PG0656|5end_50S_ribosomal_protein_L34_707097..707327_NEGATIVE 326 110 62 116 61 NC_002950:PG2225|5end_hypothetical_protein_2339440..2339670_POSITIVE 325 89 41 150 82 NC_002950:PG1966|5end_hypothetical_protein_2056924..2057154_NEGATIVE 325 105 62 67 28 NC_002950:PG0282|5end_ABC_transporter,_ATP-binding_protein_316915..317145_NEGATIVE 324 138 94 218 159 NC_002950:PG2110|5end_thiamine_biosynthesis_protein_ThiC_2221212..2221442_NEGATIVE 324 77 31 193 142 NC_002950:PG0360|5end_lemA_protein_393482..393712_POSITIVE 322 110 61 229 176 NC_002950:PG2027|5end_hypothetical_protein_2125494..2125724_POSITIVE 322 101 61 153 105 NC_002950:PG1675|5end_hypothetical_protein_1760182..1760412_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 377 140 95 47 2 NC_002950:PG1005|3end_lipoprotein,_putative_1063023..1063173_NEGATIVE 353 109 64 68 25 NC_002950:PG2102|3end_immunoreactive_61_kDa_antigen_PG91_2211424..2211574_NEGATIVE 348 99 51 79 37 NC_002950:PG0803|3end_glucosamine-6-phosphate_deaminase_859727..859877_NEGATIVE 343 110 63 82 41 NC_002950:PG0938|3end_calcium-transporting_ATPase_997194..997344_NEGATIVE 341 100 61 144 97 NC_002950:PG0068|3end_hypothetical_protein_82079..82229_POSITIVE 336 79 31 108 66 NC_002950:PG2145|3end_polysaccharide_deacetylase_2253938..2254088_POSITIVE 336 120 71 151 107 NC_002950:PG2029|3end_hypothetical_protein_2129202..2129352_POSITIVE 330 50 1 73 31 NC_002950:PG2163|3end_acid_phosphatase_2268801..2268951_NEGATIVE 326 110 62 96 41 NC_002950:PG2224|3end_hypothetical_protein_2339500..2339650_POSITIVE 324 138 94 148 89 NC_002950:PG2111|3end_thiS_protein_2221282..2221432_NEGATIVE 324 66 21 72 33 NC_002950:PG2044|3end_hypothetical_protein_2144165..2144315_POSITIVE 324 77 31 149 98 NC_002950:PG0359|3end_flavin_reductase_domain_protein_393518..393668_POSITIVE 321 110 61 86 21 NC_002950:PG1881|3end_hypothetical_protein_1978046..1978196_POSITIVE 320 67 21 47 8 NC_002950:PG2110|3end_thiamine_biosynthesis_protein_ThiC_2219449..2219599_NEGATIVE 319 60 12 53 9 NC_002950:PG1802|3end_hypothetical_protein_1896558..1896708_POSITIVE 318 86 43 109 72 NC_002950:PG1324|3end_Holliday_junction_resolvase_1402862..1403012_NEGATIVE 317 110 63 128 84 NC_002950:PG1996|3end_deoxyribose-phosphate_aldolase_2086870..2087020_POSITIVE 317 88 45 88 38 NC_002950:PG1095|3end_RNA_methyltransferase,_TrmA_family_1161702..1161852_POSITIVE 314 99 51 118 69 NC_002950:PG2094|3end_hypothetical_protein_2193321..2193471_NEGATIVE 314 68 21 137 98 NC_002950:PG0087|3end_SIS_domain_protein_102505..102655_NEGATIVE