Origin IGS: atatcagaggttatggctaatatatgcaccaatctgttcttctgctccacagagaacaaagagaacctgaaaacggtagaaaactacatgacggatacttttttcgggagtatcttttccgtctccaaatctttcatctgttgtcttcgatcccggactgccgataatgcaatgtatcacagtccgtattgaaggctgacgatgtgcaaaaagacctcggcagaaagtcaggtcgtccttacacgaatgttaggtcgaccttacgggccgtttaggtcgtccttacagaccgtttacgtcgaccttacagaccgtttaggtcgacctaactgaacgattaggtcgacctaaaacaaacaacaggtcgtcccgacacatcaaaatcccttcgtgcgatgggtcgcaatccggcagagagccaatgccaaacagattattaaaggttgaattttgaggatatgagttactgattgacgaatcgacaaaccctaagaaatagggattccgggctgtgaaaatagccactattggcgattgcaaacgatattctacttgtatatttttgcgaactcaaataataagaaaaaggt .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 acctttttcttattatttgagttcgcaaaaatatacaagtagaatatcgtttgcaatcgccaatagtggctattttcacagcccggaatccctatttcttagggtttgtcgattcgtcaatcagtaactcatatcctcaaaattcaacctttaataatctgtttggcattggctctctgccggattgcgacccatcgcacgaagggattttgatgtgtcgggacgacctgttgtttgttttaggtcgacctaatcgttcagttaggtcgacctaaacggtctgtaaggtcgacgtaaacggtctgtaaggacgacctaaacggcccgtaaggtcgacctaacattcgtgtaaggacgacctgactttctgccgaggtctttttgcacatcgtcagccttcaatacggactgtgatacattgcattatcggcagtccgggatcgaagacaacagatgaaagatttggagacggaaaagatactcccgaaaaaagtatccgtcatgtagttttctaccgttttcaggttctctttgttctctgtggagcagaagaacagattggtgcatatattagccataacctctgatat Mask Tandem Repeat Region ================================================ atatcagaggttatggctaatatatgcaccaatctgttcttctgctccacagagaacaaagagaacctgaaaacggtagaaaactacatgacggatacttttttcgggagtatcttttccgtctccaaatctttcatctgttgtcttcgatcccggactgccgataatgcaatgtatcacagtccgtattgaaggctgacgatgtgcaaaaagacctcggcagaaagtcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaacaaacaacaggtcgtcccgacacatcaaaatcccttcgtgcgatgggtcgcaatccggcagagagccaatgccaaacagattattaaaggttgaattttgaggatatgagttactgattgacgaatcgacaaaccctaagaaatagggattccgggctgtgaaaatagccactattggcgattgcaaacgatattctacttgtatatttttgcgaactcaaataataagaaaaaggt Find is-nt database================================================ Query_seq: PG1463:PG1465|PG1463:PG1465:hypothetical protein:hypothetical protein:->->:1541532..1542121 590 atatcagaggttatggctaatatatgcaccaatctgttcttctgctccacagagaacaaagagaacctgaaaacggtagaaaactacatgacggatacttttttcgggagtatcttttccgtctccaaatctttcatctgttgtcttcgatcccggactgccgataatgcaatgtatcacagtccgtattgaaggctgacgatgtgcaaaaagacctcggcagaaagtcaggtcgtccttacacgaatgttaggtcgaccttacgggccgtttaggtcgtccttacagaccgtttacgtcgaccttacagaccgtttaggtcgacctaactgaacgattaggtcgacctaaaacaaacaacaggtcgtcccgacacatcaaaatcccttcgtgcgatgggtcgcaatccggcagagagccaatgccaaacagattattaaaggttgaattttgaggatatgagttactgattgacgaatcgacaaaccctaagaaatagggattccgggctgtgaaaatagccactattggcgattgcaaacgatattctacttgtatatttttgcgaactcaaataataagaaaaaggt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PG1463:PG1465|PG1463:PG1465:hypothetical protein:hypothetical protein:->->:1541532..1542121 590 atatcagaggttatggctaatatatgcaccaatctgttcttctgctccacagagaacaaagagaacctgaaaacggtagaaaactacatgacggatacttttttcgggagtatcttttccgtctccaaatctttcatctgttgtcttcgatcccggactgccgataatgcaatgtatcacagtccgtattgaaggctgacgatgtgcaaaaagacctcggcagaaagtcaggtcgtccttacacgaatgttaggtcgaccttacgggccgtttaggtcgtccttacagaccgtttacgtcgaccttacagaccgtttaggtcgacctaactgaacgattaggtcgacctaaaacaaacaacaggtcgtcccgacacatcaaaatcccttcgtgcgatgggtcgcaatccggcagagagccaatgccaaacagattattaaaggttgaattttgaggatatgagttactgattgacgaatcgacaaaccctaagaaatagggattccgggctgtgaaaatagccactattggcgattgcaaacgatattctacttgtatatttttgcgaactcaaataataagaaaaaggt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PG1463:PG1465|PG1463:PG1465:hypothetical protein:hypothetical protein:->->:1541532..1542121 590 atatcagaggttatggctaatatatgcaccaatctgttcttctgctccacagagaacaaagagaacctgaaaacggtagaaaactacatgacggatacttttttcgggagtatcttttccgtctccaaatctttcatctgttgtcttcgatcccggactgccgataatgcaatgtatcacagtccgtattgaaggctgacgatgtgcaaaaagacctcggcagaaagtcaggtcgtccttacacgaatgttaggtcgaccttacgggccgtttaggtcgtccttacagaccgtttacgtcgaccttacagaccgtttaggtcgacctaactgaacgattaggtcgacctaaaacaaacaacaggtcgtcccgacacatcaaaatcccttcgtgcgatgggtcgcaatccggcagagagccaatgccaaacagattattaaaggttgaattttgaggatatgagttactgattgacgaatcgacaaaccctaagaaatagggattccgggctgtgaaaatagccactattggcgattgcaaacgatattctacttgtatatttttgcgaactcaaataataagaaaaaggt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 atatcagaggttatggctaatatatgcaccaatctgttcttctgctccacagagaacaaagagaacctgaaaacggtagaaaactacatgacggatacttttttcgggagtatcttttccgtctccaaatctttcatctgttgtcttcgatcccggactgccgataatgcaatgtatcacagtccgtattgaaggctgacgatgtgcaaaaagacctcggcagaaagtcaggtcgtccttacacgaatgttaggtcgaccttacgggccgtttaggtcgtccttacagaccgtttacgtcgaccttacagaccgtttaggtcgacctaactgaacgattaggtcgacctaaaacaaacaacaggtcgtcccgacacatcaaaatcccttcgtgcgatgggtcgcaatccggcagagagccaatgccaaacagattattaaaggttgaattttgaggatatgagttactgattgacgaatcgacaaaccctaagaaatagggattccgggctgtgaaaatagccactattggcgattgcaaacgatattctacttgtatatttttgcgaactcaaataataagaaaaaggt Predict ORF larger than 30AA ================================================ Protein_Len: 47 Strand: + Start: 24 End: 164 ....................... M H Q S V L L L H R E Q R E P E N G R K L H D G Y F F R E Y L F R L Q I F H L L S S I P D C R .......................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 1 End: 189 M S E V M A N I C T N L F F C S T E N K E N L K T V E N Y M T D T F F G S I F S V S K S F I C C L R S R T A D N A M Y H ................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 34 Strand: + Start: 95 End: 196 .............................................................................................. M L F S G V S F P S P N L S S V V F D P G L P I M Q C I T V R I E G .......................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 45 Strand: + Start: 196 End: 330 ................................................................................................................................................................................................... M T M C K K T S A E S Q V V L T R M L G R P Y G P F R S S L Q T V Y V D L T D R L G R P N .................................................................................................................................................................................................................................................................... Protein_Len: 31 Strand: + Start: 496 End: 588 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M G I P G C E N S H Y W R L Q T I F Y L Y I F A N S N N K K K .. Protein_Len: 36 Strand: - Start: 467 End: 574 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Q N V F R C V R L F L S E P S H F Y G S N A I A F S I R S T Y K Q S S M ................ Protein_Len: 35 Strand: - Start: 381 End: 485 ............................................................................................................................................................................................................................................................................................................................................................................................ F G K T R H T A I R C L A L A L C I I L P Q I K L I H T V S Q R I S M ......................................................................................................... Protein_Len: 60 Strand: - Start: 319 End: 558 .............................................................................................................................................................................................................................................................................................................................. L I G E H S P D C D P L S G I G F L N N F T S N Q P Y S N S I S S D V F G L F Y P N R A T F I A V I P S Q L R Y E V Q M ................................ Protein_Len: 37 Strand: - Start: 20 End: 130 ................... Y I C W D T R R S W L S C L S G S F P L F S C S P Y K K R S Y R K R R W M ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 60 Strand: - Start: 7 End: 231 ...... L V F L V Q F R Y F V V H R I S K E P T D K G D G F R E D T T K S G P S G I I C H I V T R I S P Q R H A F L G R C F T M ....................................................................................................................................................................................................................................................................................................................................................................... atatcagaggttatggctaatatatgcaccaatctgttcttctgctccacagagaacaaagagaacctgaaaacggtagaaaactacatgacggatacttttttcgggagtatcttttccgtctccaaatctttcatctgttgtcttcgatcccggactgccgataatgcaatgtatcacagtccgtattgaaggctgacgatgtgcaaaaagacctcggcagaaagtcaggtcgtccttacacgaatgttaggtcgaccttacgggccgtttaggtcgtccttacagaccgtttacgtcgaccttacagaccgtttaggtcgacctaactgaacgattaggtcgacctaaaacaaacaacaggtcgtcccgacacatcaaaatcccttcgtgcgatgggtcgcaatccggcagagagccaatgccaaacagattattaaaggttgaattttgaggatatgagttactgattgacgaatcgacaaaccctaagaaatagggattccgggctgtgaaaatagccactattggcgattgcaaacgatattctacttgtatatttttgcgaactcaaataataagaaaaaggt Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ atatcagaggttatggctaatatatgcaccaatctgttcttctgctccacagagaacaaagagaacctgaaaacggtagaaaactacatgacggatacttttttcgggagtatcttttccgtctccaaatctttcatctgttgtcttcgatcccggactgccgataatgcaatgtatcacagtccgtattgaaggctgacgatgtgcaaaaagacctcggcagaaagtcaggtcgtccttacacgaatgttaggtcgaccttacgggccgtttaggtcgtccttacagaccgtttacgtcgaccttacagaccgtttaggtcgacctaactgaacgattaggtcgacctaaaacaaacaacaggtcgtcccgacacatcaaaatcccttcgtgcgatgggtcgcaatccggcagagagccaatgccaaacagattattaaaggttgaattttgaggatatgagttactgattgacgaatcgacaaaccctaagaaatagggattccgggctgtgaaaatagccactattggcgattgcaaacgatattctacttgtatatttttgcgaactcaaataataagaaaaaggt Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 91 HP_score: -11.3 Tail_Score: -3.86524 Start: 227 End: 264 Full_Region: cgacctaaacggccc gtaaggtcgacctaaca ttcg tgtaaggacgacctgac tttctgccgaggtct ..................................................................................................................................................................................................................................gtaaggtcgacctaacattcgtgtaaggacgacctgac...................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 72 HP_score: -10.3 Tail_Score: -2.89564 Start: 312 End: 356 Full_Region: gggacgacctgttgt ttgttttaggtcgacctaat cgttca gttaggtcgacctaaacgg tctgtaaggtcgacg .......................................................................................................................................................................................................................................................................................................................ttgttttaggtcgacctaatcgttcagttaggtcgacctaaacgg.......................................................................................................................................................................................................................................... Find igs database================================================ Query_seq: PG1463:PG1465|PG1463:PG1465:hypothetical protein:hypothetical protein:->->:1541532..1542121 590 atatcagaggttatggctaatatatgcaccaatctgttcttctgctccacagagaacaaagagaacctgaaaacggtagaaaactacatgacggatacttttttcgggagtatcttttccgtctccaaatctttcatctgttgtcttcgatcccggactgccgataatgcaatgtatcacagtccgtattgaaggctgacgatgtgcaaaaagacctcggcagaaagtcaggtcgtccttacacgaatgttaggtcgaccttacgggccgtttaggtcgtccttacagaccgtttacgtcgaccttacagaccgtttaggtcgacctaactgaacgattaggtcgacctaaaacaaacaacaggtcgtcccgacacatcaaaatcccttcgtgcgatgggtcgcaatccggcagagagccaatgccaaacagattattaaaggttgaattttgaggatatgagttactgattgacgaatcgacaaaccctaagaaatagggattccgggctgtgaaaatagccactattggcgattgcaaacgatattctacttgtatatttttgcgaactcaaataataagaaaaaggt Intra-Species Hit: Count: 1 Min: 1 Max: 590 Len: 590 Subject: NC_002950_PG1463_PG1465|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1541532,1542121]|590 HSP 1 e-value: 0.0 bit: 1170.0 Len: 590 Query Start:1 Query End:590 Subject Strand: POSITIVE Subject Start: 1 Subject End: 590 atatcagaggttatggctaatatatgcaccaatctgttcttctgctccacagagaacaaagagaacctgaaaacggtagaaaactacatgacggatacttttttcgggagtatcttttccgtctccaaatctttcatctgttgtcttcgatcccggactgccgataatgcaatgtatcacagtccgtattgaaggctgacgatgtgcaaaaagacctcggcagaaagtcaggtcgtccttacacgaatgttaggtcgaccttacgggccgtttaggtcgtccttacagaccgtttacgtcgaccttacagaccgtttaggtcgacctaactgaacgattaggtcgacctaaaacaaacaacaggtcgtcccgacacatcaaaatcccttcgtgcgatgggtcgcaatccggcagagagccaatgccaaacagattattaaaggttgaattttgaggatatgagttactgattgacgaatcgacaaaccctaagaaatagggattccgggctgtgaaaatagccactattggcgattgcaaacgatattctacttgtatatttttgcgaactcaaataataagaaaaaggt atatcagaggttatggctaatatatgcaccaatctgttcttctgctccacagagaacaaagagaacctgaaaacggtagaaaactacatgacggatacttttttcgggagtatcttttccgtctccaaatctttcatctgttgtcttcgatcccggactgccgataatgcaatgtatcacagtccgtattgaaggctgacgatgtgcaaaaagacctcggcagaaagtcaggtcgtccttacacgaatgttaggtcgaccttacgggccgtttaggtcgtccttacagaccgtttacgtcgaccttacagaccgtttaggtcgacctaactgaacgattaggtcgacctaaaacaaacaacaggtcgtcccgacacatcaaaatcccttcgtgcgatgggtcgcaatccggcagagagccaatgccaaacagattattaaaggttgaattttgaggatatgagttactgattgacgaatcgacaaaccctaagaaatagggattccgggctgtgaaaatagccactattggcgattgcaaacgatattctacttgtatatttttgcgaactcaaataataagaaaaaggt Inter-species Hit: Count: 2 Min: 102 Max: 590 Len: 489 Subject: tfor_TF0904_TF0906|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[949217,949814]|598 HSP 1 e-value: 1.0E-124 bit: 446.0 Len: 341 Query Start:250 Query End:590 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 341 .........................................................................................................................................................................................................................................................ttaggtcgaccttacgggccgtttaggtcgtccttacagaccgtttacgtcgaccttacagaccgtttaggtcgacctaactgaacgattaggtcgacctaaaacaaacaacaggtcgtcccgacacatcaaaatcccttcgtgcgatgggtcgcaatccggcagagagccaatgccaaacagattattaaaggttgaattttgaggatatgagttactgattgacgaatcgacaaaccctaagaaatagggattccgggctgtgaaaatagccactattggcgattgcaaacgatattctacttgtatatttttgcgaactcaaataataagaaaaaggt .........................................................................................................................................................................................................................................................ttaggtcgaccttgcagaccgtttacgtcgtccttacagactgtttaggtcgacctaactgaacgattaggtcgacctaaaacaaataacaggtcgtcctaatgcagatgacaggtcgtcccgacacatcaaaatcccttcatgcgatgggtcgcaatccggcagagagccaatgccaaacagattattaaaggttgaattttgaggatatgagttactgattgacgaatcgacaaaccctaagaaatagggattccggactgtgaaaatagccactattggcgattgcaaacgatattccacttgtatagttttgtaaactcaaataataagaaaaaggt HSP 2 e-value: 1.0E-121 bit: 438.0 Len: 269 Query Start:102 Query End:370 Subject Strand: NEGATIVE Subject Start: 243 Subject End: 511 .....................................................................................................tttcgggagtatcttttccgtctccaaatctttcatctgttgtcttcgatcccggactgccgataatgcaatgtatcacagtccgtattgaaggctgacgatgtgcaaaaagacctcggcagaaagtcaggtcgtccttacacgaatgttaggtcgaccttacgggccgtttaggtcgtccttacagaccgtttacgtcgaccttacagaccgtttaggtcgacctaactgaacgattaggtcgacctaaaacaaacaacaggtcgtcc............................................................................................................................................................................................................................ .....................................................................................................tttcgggagcatcttttccgtctccaaatcttccacttgttgtcttcgatcccggactgccgataatgcaatgtatcacagtccgtattgaaggctgacgatgtgcaaaaagaccccggcagaaagtcaggtcgtccttacatgaatgttaggtcgaccttacaggccgtttaggtcgaccttgcagaccgtttacgtcgtccttacagactgtttaggtcgacctaactgaacgattaggtcgacctaaaacaaataacaggtcgtcc............................................................................................................................................................................................................................ Subject: tfor_TF0862_TF0864|conserved hypothetical protein fragment:O-succinylbenzoate--CoA ligase|POSITIVE:POSITIVE|[914520,914709]|190 HSP 1 e-value: 4.0E-10 bit: 67.9 Len: 58 Query Start:298 Query End:355 Subject Strand: NEGATIVE Subject Start: 55 Subject End: 112 .........................................................................................................................................................................................................................................................................................................gtcgaccttacagaccgtttaggtcgacctaactgaacgattaggtcgacctaaaaca........................................................................................................................................................................................................................................... .........................................................................................................................................................................................................................................................................................................gtcgaccttgcggagcatttaggtcgacctaacagaacgattaggacgacctaaaaca........................................................................................................................................................................................................................................... HSP 2 e-value: 6.0E-6 bit: 54.0 Len: 35 Query Start:252 Query End:286 Subject Strand: POSITIVE Subject Start: 105 Subject End: 139 ...........................................................................................................................................................................................................................................................aggtcgaccttacgggccgtttaggtcgtccttac................................................................................................................................................................................................................................................................................................................ ...........................................................................................................................................................................................................................................................aggtcgaccttaccggccgtttaggtcgaccttac................................................................................................................................................................................................................................................................................................................ Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UUUCGGGAGUAUCUUUUCCGUCUCCAAAUCUUUCAUCUGUUGUCUUCGAUCCCGGACUGCCGAUAAUGCAAUGUAUCACAGUCCGUAUUGAAGGCUGACGAUGUGCAAAAAGACCUCGGCAGAAAGUCAGGUCGUCCUUACACGAAUGUUAGGUCGACCUUACGGGCCGUUUAGGUCGUCCUUACAGACCGUUUACGUCGACCUUACAGACCGUUUAGGUCGACCUAACUGAACGAUUAGGUCGACCUAAAACAAACAACAGGUCGUCCCGACACAUCAAAAUCCCUUCGUGCGAUGGGUCGCAAUCCGGCAGAGAGCCAAUGCCAAACAGAUUAUUAAAGGUUGAAUUUUGAGGAUAUGAGUUACUGAUUGACGAAUCGACAAACCCUAAGAAAUAGGGAUUCCGGGCUGUGAAAAUAGCCACUAUUGGCGAUUGCAAACGAUAUUCUACUUGUAUAUUUUUGCGAACUCAAAUAAUAAGAAAAAGGU ...((((((.....))))))...((.(((((((.((((((((((((((((..(((((((..((((........)))).))))))).)))))))))....(((((((.....(((((((((.....((.((((((.(((.(((....))).))).)))))).))..))))...)))))...................(.((((((.........(((((((((((((((........))))))))))))))).........)))))).)..).))))))............(((((....)))))....((((.........)))).)))))))....)))))))...((((....((.((((((...........(((((.(((.(((((.....)))))......((((((....))))))....))).)))))(((((.(((((.(.....).)))))))))).)))))).))....))))...)). (-157.17) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ ACCUUUUUCUUAUUAUUUGAGUUCGCAAAAAUAUACAAGUAGAAUAUCGUUUGCAAUCGCCAAUAGUGGCUAUUUUCACAGCCCGGAAUCCCUAUUUCUUAGGGUUUGUCGAUUCGUCAAUCAGUAACUCAUAUCCUCAAAAUUCAACCUUUAAUAAUCUGUUUGGCAUUGGCUCUCUGCCGGAUUGCGACCCAUCGCACGAAGGGAUUUUGAUGUGUCGGGACGACCUGUUGUUUGUUUUAGGUCGACCUAAUCGUUCAGUUAGGUCGACCUAAACGGUCUGUAAGGUCGACGUAAACGGUCUGUAAGGACGACCUAAACGGCCCGUAAGGUCGACCUAACAUUCGUGUAAGGACGACCUGACUUUCUGCCGAGGUCUUUUUGCACAUCGUCAGCCUUCAAUACGGACUGUGAUACAUUGCAUUAUCGGCAGUCCGGGAUCGAAGACAACAGAUGAAAGAUUUGGAGACGGAAAAGAUACUCCCGAAA .((....((((.(((((((.....(((((.((((.(.....).))))..)))))....((((....))))..(((((....((((((..(((((.....)))))...((((((..(((((.(((..................................))).)))))))))))...(((((((..(((..(((.((....)).))).....((((((((.((((((....))))))...(((((((((((((((......)))))))))))))))((((((((((((((.((((......((.((((((((.(((((...((((..((.((((((.(((.(((....))).))).)))))).)).....))))))))))))))))).)))))).))))....)))))))))))))))))))))...)))))))))))))...)))))...)))))))))))...))...(((...........)))... (-159.38) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 846 50 1 105 56 NC_002950:PG1459|5end_hypothetical_protein_1539769..1539999_NEGATIVE 467 327 295 196 162 NC_002950:PG1951|5end_glutaminyl-tRNA_synthetase_2041142..2041372_POSITIVE 422 325 283 52 5 NC_002950:PG0898|5end_hypothetical_protein_963350..963580_NEGATIVE 409 330 287 163 108 NC_002950:PG0283|5end_efflux_transporter,_MFP_component,_RND_family_318245..318475_NEGATIVE 390 178 141 42 6 NC_002950:PG0179|5end_hypothetical_protein_201783..202013_POSITIVE 385 333 292 63 24 NC_002950:PG0430|5end_ferrodoxin_oxidoreductase_beta_subunit_467986..468216_POSITIVE 384 178 131 62 17 NC_002950:PG0927|5end_conserved_hypothetical_protein_TIGR00150_985050..985280_NEGATIVE 380 310 262 143 86 NC_002950:PG0958|5end_ribonuclease_BN,_putative_1019370..1019600_NEGATIVE 371 324 287 62 17 NC_002950:PG1118|5end_clpB_protein_1194674..1194904_NEGATIVE 366 170 128 179 127 NC_002950:PG1474|5end_conjugative_transposon_protein_TraO_1550816..1551046_NEGATIVE 362 316 272 221 184 NC_002950:PG1687|5end_HIT_family_protein_1774201..1774431_NEGATIVE 356 89 41 101 46 NC_002950:PG0746|5end_sensor_histidine_kinase_793903..794133_NEGATIVE 356 319 287 64 29 NC_002950:PG0482|5end_hypothetical_protein_523129..523359_NEGATIVE 353 326 286 57 7 NC_002950:PG1424|5end_peptidylarginine_deiminase_1510807..1511037_NEGATIVE 352 317 283 207 174 NC_002950:PG1220|5end_erythronate-4-phosphate_dehydrogenase_1296986..1297216_POSITIVE 352 330 286 190 138 NC_002950:PG0309|5end_thiamine_biosynthesis_lipoprotein_ApbE_345023..345253_NEGATIVE 348 328 284 53 1 NC_002950:PG1945|5end_hypothetical_protein_2031697..2031927_POSITIVE 347 328 283 53 19 NC_002950:PG2106|5end_hypothetical_protein_2214694..2214924_POSITIVE 346 200 152 227 178 NC_002950:PG2098|5end_hypothetical_protein_2206635..2206865_NEGATIVE 345 328 285 62 9 NC_002950:PG2054|5end_lipoprotein_PG3_2152014..2152244_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 386 169 123 114 72 NC_002950:PG1324|3end_Holliday_junction_resolvase_1402862..1403012_NEGATIVE 384 178 131 50 5 NC_002950:PG0928|3end_response_regulator_985062..985212_NEGATIVE 370 180 131 51 2 NC_002950:PG1005|3end_lipoprotein,_putative_1063023..1063173_NEGATIVE 367 325 286 149 102 NC_002950:PG0010|3end_ATP-dependent_Clp_protease,_ATP-binding_subunit_ClpC_11434..11584_POSITIVE 365 207 163 140 96 NC_002950:PG0498|3end_S-ribosylhomocysteinase_538527..538677_POSITIVE 363 54 11 88 38 NC_002950:PG0062|3end_TPR_domain_protein_75810..75960_POSITIVE 356 89 41 104 49 NC_002950:PG0747|3end_sigma-54_dependent_DNA-binding_response_regulator_793900..794050_NEGATIVE 344 326 281 90 43 NC_002950:PG1808|3end_guanosine-3',5'-bis(diphosphate)_3'-pyrophosphohydrolase_1902955..1903105_NEGATIVE 339 56 12 45 4 NC_002950:PG1853|3end_DNA_polymerase_III,_beta_subunit_1951986..1952136_NEGATIVE 338 73 35 140 98 NC_002950:PG1388|3end_hypothetical_protein_1470095..1470245_NEGATIVE 338 324 289 67 18 NC_002950:PG0477|3end_pantoate--beta-alanine_ligase_518752..518902_NEGATIVE 335 326 282 136 68 NC_002950:PG1675|3end_hypothetical_protein_1760360..1760510_POSITIVE 334 90 41 142 102 NC_002950:PG0126|3end_type_I_phosphodiesterase/nucleotide_pyrophosphatase_family_protein_146783..146933_NEGATIVE 333 199 152 55 11 NC_002950:PG2190|3end_cell-division_ATP-binding_protein_2297169..2297319_NEGATIVE 332 336 291 53 6 NC_002950:PG0212|3end_precorrin-6Y_C5,15-methyltransferase,_decarboxylating_247824..247974_NEGATIVE 329 309 265 50 3 NC_002950:PG1009|3end_hypothetical_protein_1067641..1067791_NEGATIVE 327 317 285 42 8 NC_002950:PG0368|3end_DNA_topoisomerase_IV_subunit_B_403259..403409_POSITIVE 327 437 394 121 68 NC_002950:PG0003|3end_hypothetical_protein_1919..2069_NEGATIVE 326 159 116 53 9 NC_002950:PG0636|3end_MATE_efflux_family_protein_687707..687857_NEGATIVE 326 318 271 129 63 NC_002950:PG0143|3end_hydrolase,_carbon-nitrogen_family_165747..165897_NEGATIVE