Origin IGS: acgctttaactttatgggcaaaattacccgttatcaaagcgttctctgatacgcaaaatattgataaacagataaaaagaaaccgtatgagaaaaattcttccaataatcattacctcagtttgttcgggaaacaacaggataacggtttggtaactgaaaggtctcaatatcccatactgttttgcctatccctatctgtcgcagaacatagaaaaacaactaattcacaaccagttaccatatttccacctatgttcctcttacgcttgcttaggcttgtatttaccacatggcccggcacacatttgccacgatgtctttgagcaaaggcgttcccatcgaatccgtgtcgaagatgctgggacacaccaatatcaaaacgacgcagatttacgcccgtatcaccaataaaaagatagaacaggacatgcttaagctatcggataagctggatatattcagatctccggtgtcacaagcaaaacaatgacttgaaattgaatacaaattctataaatcaatgatatgaatacaataacagcagatgtaagcgtcatccggaataaaattcttgagattcgtggcaacaga .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 tctgttgccacgaatctcaagaattttattccggatgacgcttacatctgctgttattgtattcatatcattgatttatagaatttgtattcaatttcaagtcattgttttgcttgtgacaccggagatctgaatatatccagcttatccgatagcttaagcatgtcctgttctatctttttattggtgatacgggcgtaaatctgcgtcgttttgatattggtgtgtcccagcatcttcgacacggattcgatgggaacgcctttgctcaaagacatcgtggcaaatgtgtgccgggccatgtggtaaatacaagcctaagcaagcgtaagaggaacataggtggaaatatggtaactggttgtgaattagttgtttttctatgttctgcgacagatagggataggcaaaacagtatgggatattgagacctttcagttaccaaaccgttatcctgttgtttcccgaacaaactgaggtaatgattattggaagaatttttctcatacggtttctttttatctgtttatcaatattttgcgtatcagagaacgctttgataacgggtaattttgcccataaagttaaagcgt Mask Tandem Repeat Region ================================================ acgctttaactttatgggcaaaattacccgttatcaaagcgttctctgatacgcaaaatattgataaacagataaaaagaaaccgtatgagaaaaattcttccaataatcattacctcagtttgttcgggaaacaacaggataacggtttggtaactgaaaggtctcaatatcccatactgttttgcctatccctatctgtcgcagaacatagaaaaacaactaattcacaaccagttaccatatttccacctatgttcctcttacgcttgcttaggcttgtatttaccacatggcccggcacacatttgccacgatgtctttgagcaaaggcgttcccatcgaatccgtgtcgaagatgctgggacacaccaatatcaaaacgacgcagatttacgcccgtatcaccaataaaaagatagaacaggacatgcttaagctatcggataagctggatatattcagatctccggtgtcacaagcaaaacaatgacttgaaattgaatacaaattctataaatcaatgatatgaatacaataacagcagatgtaagcgtcatccggaataaaattcttgagattcgtggcaacaga Find is-nt database================================================ Query_seq: PG1454:PG1457|PG1454:PG1457:integrase:hypothetical protein:<-->:1538197..1538789 593 acgctttaactttatgggcaaaattacccgttatcaaagcgttctctgatacgcaaaatattgataaacagataaaaagaaaccgtatgagaaaaattcttccaataatcattacctcagtttgttcgggaaacaacaggataacggtttggtaactgaaaggtctcaatatcccatactgttttgcctatccctatctgtcgcagaacatagaaaaacaactaattcacaaccagttaccatatttccacctatgttcctcttacgcttgcttaggcttgtatttaccacatggcccggcacacatttgccacgatgtctttgagcaaaggcgttcccatcgaatccgtgtcgaagatgctgggacacaccaatatcaaaacgacgcagatttacgcccgtatcaccaataaaaagatagaacaggacatgcttaagctatcggataagctggatatattcagatctccggtgtcacaagcaaaacaatgacttgaaattgaatacaaattctataaatcaatgatatgaatacaataacagcagatgtaagcgtcatccggaataaaattcttgagattcgtggcaacaga Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PG1454:PG1457|PG1454:PG1457:integrase:hypothetical protein:<-->:1538197..1538789 593 acgctttaactttatgggcaaaattacccgttatcaaagcgttctctgatacgcaaaatattgataaacagataaaaagaaaccgtatgagaaaaattcttccaataatcattacctcagtttgttcgggaaacaacaggataacggtttggtaactgaaaggtctcaatatcccatactgttttgcctatccctatctgtcgcagaacatagaaaaacaactaattcacaaccagttaccatatttccacctatgttcctcttacgcttgcttaggcttgtatttaccacatggcccggcacacatttgccacgatgtctttgagcaaaggcgttcccatcgaatccgtgtcgaagatgctgggacacaccaatatcaaaacgacgcagatttacgcccgtatcaccaataaaaagatagaacaggacatgcttaagctatcggataagctggatatattcagatctccggtgtcacaagcaaaacaatgacttgaaattgaatacaaattctataaatcaatgatatgaatacaataacagcagatgtaagcgtcatccggaataaaattcttgagattcgtggcaacaga Intra-Species Hit: Count: 0 Inter-species Hit: Count: 35 Min: 181 Max: 486 Len: 306 Subject: gi|29349431|ref|NP_812934.1| transposase [Bacteroides thetaiotaomicron VPI-5482] HSP 1 e-value: 8.0E-17 bit: 82.4 Len: 186 Query Start:262 Query End:447 Subject Strand: null Subject Start: 38 Subject End: 100 ..................................................................................................................................................................................................................................................................... L T L A * A C I Y H M A R H T F A T - M S L S K G V P I E S V S K M L G H T N I K T T Q I Y A R I T N K K I E Q D M L K L S D .................................................................................................................................................. ..................................................................................................................................................................................................................................................................... L L L A S P C I F H M A R H T F A T T I T L S H G I P I E T V S K M L G H T S I K T T Q I Y A K I L D T K V M D D M A A L K E .................................................................................................................................................. HSP 2 e-value: 8.0E-17 bit: 21.6 Len: 66 Query Start:195 Query End:260 Subject Strand: null Subject Start: 16 Subject End: 37 .................................................................................................................................................................................................. Y L S Q N I E K Q L I H N Q L P Y F H L C S ............................................................................................................................................................................................................................................................................................................................................. .................................................................................................................................................................................................. H I L Q N T E I Q L I S N D L R L I F T C S ............................................................................................................................................................................................................................................................................................................................................. Subject: UniRef90_Q8A0J8 Cluster: Transposase; n=1; Bacteroides thetaiotaomicron|Rep: Transposase - Bacteroides thetaiotaomicron HSP 1 e-value: 8.0E-17 bit: 82.4 Len: 186 Query Start:262 Query End:447 Subject Strand: null Subject Start: 38 Subject End: 100 ..................................................................................................................................................................................................................................................................... L T L A * A C I Y H M A R H T F A T - M S L S K G V P I E S V S K M L G H T N I K T T Q I Y A R I T N K K I E Q D M L K L S D .................................................................................................................................................. ..................................................................................................................................................................................................................................................................... L L L A S P C I F H M A R H T F A T T I T L S H G I P I E T V S K M L G H T S I K T T Q I Y A K I L D T K V M D D M A A L K E .................................................................................................................................................. HSP 2 e-value: 8.0E-17 bit: 21.6 Len: 66 Query Start:195 Query End:260 Subject Strand: null Subject Start: 16 Subject End: 37 .................................................................................................................................................................................................. Y L S Q N I E K Q L I H N Q L P Y F H L C S ............................................................................................................................................................................................................................................................................................................................................. .................................................................................................................................................................................................. H I L Q N T E I Q L I S N D L R L I F T C S ............................................................................................................................................................................................................................................................................................................................................. Subject: gi|60680742|ref|YP_210886.1| putative transposase [Bacteroides fragilis NCTC 9343] HSP 1 e-value: 2.0E-16 bit: 82.0 Len: 165 Query Start:286 Query End:450 Subject Strand: null Subject Start: 343 Subject End: 398 ............................................................................................................................................................................................................................................................................................. Y H M A R H T F A T M S - L S K G V P I E S V S K M L G H T N I K T T Q I Y A R I T N K K I E Q D M L K L S D K ............................................................................................................................................... ............................................................................................................................................................................................................................................................................................. F H L A R H T F A T T T T L A K G V P I E T V S K M L G H T N I E T T Q I Y A R I T N N K I S N D M Q G L D K K ............................................................................................................................................... Subject: UniRef90_Q5LG02 Cluster: Putative transposase; n=1; Bacteroides fragilis NCTC 9343|Rep: Putative transposase - Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) HSP 1 e-value: 2.0E-16 bit: 82.0 Len: 165 Query Start:286 Query End:450 Subject Strand: null Subject Start: 343 Subject End: 398 ............................................................................................................................................................................................................................................................................................. Y H M A R H T F A T M S - L S K G V P I E S V S K M L G H T N I K T T Q I Y A R I T N K K I E Q D M L K L S D K ............................................................................................................................................... ............................................................................................................................................................................................................................................................................................. F H L A R H T F A T T T T L A K G V P I E T V S K M L G H T N I E T T Q I Y A R I T N N K I S N D M Q G L D K K ............................................................................................................................................... Subject: gi|29345486|ref|NP_808989.1| transposase [Bacteroides thetaiotaomicron VPI-5482] HSP 1 e-value: 3.0E-16 bit: 81.6 Len: 165 Query Start:286 Query End:450 Subject Strand: null Subject Start: 341 Subject End: 396 ............................................................................................................................................................................................................................................................................................. Y H M A R H T F A T M S - L S K G V P I E S V S K M L G H T N I K T T Q I Y A R I T N K K I E Q D M L K L S D K ............................................................................................................................................... ............................................................................................................................................................................................................................................................................................. F H L A R H T F A T T T T L A K G V P V E T V S K M L G H T N I E T T Q I Y A R I T N N K I S N D M Q G L D K K ............................................................................................................................................... Subject: UniRef90_Q8ABN4 Cluster: Transposase; n=2; Bacteroides|Rep: Transposase - Bacteroides thetaiotaomicron HSP 1 e-value: 3.0E-16 bit: 81.6 Len: 165 Query Start:286 Query End:450 Subject Strand: null Subject Start: 341 Subject End: 396 ............................................................................................................................................................................................................................................................................................. Y H M A R H T F A T M S - L S K G V P I E S V S K M L G H T N I K T T Q I Y A R I T N K K I E Q D M L K L S D K ............................................................................................................................................... ............................................................................................................................................................................................................................................................................................. F H L A R H T F A T T T T L A K G V P V E T V S K M L G H T N I E T T Q I Y A R I T N N K I S N D M Q G L D K K ............................................................................................................................................... Subject: gi|29347687|ref|NP_811190.1| transposase [Bacteroides thetaiotaomicron VPI-5482] HSP 1 e-value: 7.0E-16 bit: 80.5 Len: 195 Query Start:286 Query End:480 Subject Strand: null Subject Start: 351 Subject End: 416 ............................................................................................................................................................................................................................................................................................. Y H M A R H T F A T - M S L S K G V P I E S V S K M L G H T N I K T T Q I Y A R I T N K K I E Q D M L K L S D K L D I F R S P V S Q ................................................................................................................. ............................................................................................................................................................................................................................................................................................. Y H L A R H S F A T E I C L T K G V P I E S V S K M L G H T N I Q T T Q I Y A R V V D R K L S H D M N M L D R K L K N M Q K G T T Q ................................................................................................................. Subject: UniRef90_Q8A5G2 Cluster: Transposase; n=1; Bacteroides thetaiotaomicron|Rep: Transposase - Bacteroides thetaiotaomicron HSP 1 e-value: 7.0E-16 bit: 80.5 Len: 195 Query Start:286 Query End:480 Subject Strand: null Subject Start: 351 Subject End: 416 ............................................................................................................................................................................................................................................................................................. Y H M A R H T F A T - M S L S K G V P I E S V S K M L G H T N I K T T Q I Y A R I T N K K I E Q D M L K L S D K L D I F R S P V S Q ................................................................................................................. ............................................................................................................................................................................................................................................................................................. Y H L A R H S F A T E I C L T K G V P I E S V S K M L G H T N I Q T T Q I Y A R V V D R K L S H D M N M L D R K L K N M Q K G T T Q ................................................................................................................. Subject: UniRef90_Q9ZI85 Cluster: Transposase; n=1; Bacteroides fragilis|Rep: Transposase - Bacteroides fragilis HSP 1 e-value: 9.0E-16 bit: 80.1 Len: 198 Query Start:286 Query End:483 Subject Strand: null Subject Start: 343 Subject End: 409 ............................................................................................................................................................................................................................................................................................. Y H M A R H T F A T - M S L S K G V P I E S V S K M L G H T N I K T T Q I Y A R I T N K K I E Q D M L K L S D K L D I F R S P V S Q A .............................................................................................................. ............................................................................................................................................................................................................................................................................................. Y H V A R H T N A T T V L L S H G V P I E T V S R L L G H T N I K T T Q I Y A K I T A Q K I S Q D M E T L S H K L E D M E K N I C R A .............................................................................................................. Subject: gi|29346548|ref|NP_810051.1| transposase [Bacteroides thetaiotaomicron VPI-5482] HSP 1 e-value: 2.0E-15 bit: 79.0 Len: 198 Query Start:286 Query End:483 Subject Strand: null Subject Start: 344 Subject End: 410 ............................................................................................................................................................................................................................................................................................. Y H M A R H T F A T - M S L S K G V P I E S V S K M L G H T N I K T T Q I Y A R I T N K K I E Q D M L K L S D K L D I F R S P V S Q A .............................................................................................................. ............................................................................................................................................................................................................................................................................................. Y H V A R H T N A T T V L L S H G V P I E T V S R L L G H T D L K T T Q I Y A R I T N Q K I S S D M E I L S H K L E K M E K E I C D A .............................................................................................................. Subject: UniRef90_Q8A8M9 Cluster: Transposase; n=1; Bacteroides thetaiotaomicron|Rep: Transposase - Bacteroides thetaiotaomicron HSP 1 e-value: 2.0E-15 bit: 79.0 Len: 198 Query Start:286 Query End:483 Subject Strand: null Subject Start: 344 Subject End: 410 ............................................................................................................................................................................................................................................................................................. Y H M A R H T F A T - M S L S K G V P I E S V S K M L G H T N I K T T Q I Y A R I T N K K I E Q D M L K L S D K L D I F R S P V S Q A .............................................................................................................. ............................................................................................................................................................................................................................................................................................. Y H V A R H T N A T T V L L S H G V P I E T V S R L L G H T D L K T T Q I Y A R I T N Q K I S S D M E I L S H K L E K M E K E I C D A .............................................................................................................. Subject: gi|29347339|ref|NP_810842.1| transposase [Bacteroides thetaiotaomicron VPI-5482] HSP 1 e-value: 6.0E-15 bit: 77.4 Len: 165 Query Start:286 Query End:450 Subject Strand: null Subject Start: 338 Subject End: 392 ............................................................................................................................................................................................................................................................................................. Y H M A R H T F A T M S L S K G V P I E S V S K M L G H T N I K T T Q I Y A R I T N K K I E Q D M L K L S D K ............................................................................................................................................... ............................................................................................................................................................................................................................................................................................. Y H M A R H S F G T L T L T A G I P I E S I A R M M G H T N I D S T Q V Y A Q V T D R K I S S D M N R L M E R ............................................................................................................................................... Subject: UniRef90_Q64RY0 Cluster: Tyrosine type site-specific recombinase; n=2; Bacteroides|Rep: Tyrosine type site-specific recombinase - Bacteroides fragilis HSP 1 e-value: 6.0E-15 bit: 77.4 Len: 165 Query Start:286 Query End:450 Subject Strand: null Subject Start: 338 Subject End: 392 ............................................................................................................................................................................................................................................................................................. Y H M A R H T F A T M S L S K G V P I E S V S K M L G H T N I K T T Q I Y A R I T N K K I E Q D M L K L S D K ............................................................................................................................................... ............................................................................................................................................................................................................................................................................................. Y H M A R H S F G T L T L T A G I P I E S I A R M M G H T N I D S T Q V Y A Q V T D R K I S S D M N R L M E R ............................................................................................................................................... Subject: gi|83857491|ref|ZP_00951019.1| putative transposase [Croceibacter atlanticus HTCC2559] HSP 1 e-value: 1.0E-14 bit: 76.6 Len: 225 Query Start:229 Query End:453 Subject Strand: null Subject Start: 328 Subject End: 403 .................................................................................................................................................................................................................................... T T S Y H I S T Y V P L T L A * A C I Y H M A R H T F A T - M S L S K G V P I E S V S K M L G H T N I K T T Q I Y A R I T N K K I E Q D M L K L S D K L ............................................................................................................................................ .................................................................................................................................................................................................................................... T N K Y L K E I A I E L G I R K K L T F H V A R H T F A T T V T L S N G V P I E T V S K L L G H T K L S T T Q I Y A R V I E S K V S N D M N K L R D E L ............................................................................................................................................ Subject: UniRef90_UPI000066CC12 Cluster: putative transposase; n=1; Croceibacter atlanticus HTCC2559|Rep: putative transposase - Croceibacter atlanticus HTCC2559 HSP 1 e-value: 1.0E-14 bit: 76.6 Len: 225 Query Start:229 Query End:453 Subject Strand: null Subject Start: 328 Subject End: 403 .................................................................................................................................................................................................................................... T T S Y H I S T Y V P L T L A * A C I Y H M A R H T F A T - M S L S K G V P I E S V S K M L G H T N I K T T Q I Y A R I T N K K I E Q D M L K L S D K L ............................................................................................................................................ .................................................................................................................................................................................................................................... T N K Y L K E I A I E L G I R K K L T F H V A R H T F A T T V T L S N G V P I E T V S K L L G H T K L S T T Q I Y A R V I E S K V S N D M N K L R D E L ............................................................................................................................................ Subject: UniRef90_Q4AIA3 Cluster: Phage integrase; n=2; Chlorobium phaeobacteroides BS1|Rep: Phage integrase - Chlorobium phaeobacteroides BS1 HSP 1 e-value: 4.0E-14 bit: 74.7 Len: 171 Query Start:289 Query End:459 Subject Strand: null Subject Start: 347 Subject End: 404 ................................................................................................................................................................................................................................................................................................ H M A R H T F A T - M S L S K G V P I E S V S K M L G H T N I K T T Q I Y A R I T N K K I E Q D M L K L S D K L D I ...................................................................................................................................... ................................................................................................................................................................................................................................................................................................ H L A R H T F A T T V T L S N G V P I E S V S K M L G H S S I K T T Q I Y S K V V D T K I S N D M K A L K A K M T V ...................................................................................................................................... Subject: gi|67941223|ref|ZP_00533435.1| transposase [Chlorobium phaeobacteroides BS1] HSP 1 e-value: 5.0E-14 bit: 74.3 Len: 171 Query Start:289 Query End:459 Subject Strand: null Subject Start: 53 Subject End: 110 ................................................................................................................................................................................................................................................................................................ H M A R H T F A T - M S L S K G V P I E S V S K M L G H T N I K T T Q I Y A R I T N K K I E Q D M L K L S D K L D I ...................................................................................................................................... ................................................................................................................................................................................................................................................................................................ H L A R H T F A T T V T L S N G V P I E S V S K M L G H N S I K T T Q I Y S K V V D T K I S N D M K A L K A K M T V ...................................................................................................................................... Subject: gi|29347338|ref|NP_810841.1| transposase [Bacteroides thetaiotaomicron VPI-5482] HSP 1 e-value: 6.0E-14 bit: 73.9 Len: 150 Query Start:283 Query End:432 Subject Strand: null Subject Start: 345 Subject End: 395 .......................................................................................................................................................................................................................................................................................... I Y H M A R H T F A T M - S L S K G V P I E S V S K M L G H T N I K T T Q I Y A R I T N K K I E Q D M ................................................................................................................................................................. .......................................................................................................................................................................................................................................................................................... V Y H M G R H S F A S L V T L E E G V P I E T I C K M L G H S N I K T T Q I Y A R V T P K K L F E D M ................................................................................................................................................................. Subject: UniRef90_Q8A6F6 Cluster: Transposase; n=3; Bacteroides|Rep: Transposase - Bacteroides thetaiotaomicron HSP 1 e-value: 6.0E-14 bit: 73.9 Len: 150 Query Start:283 Query End:432 Subject Strand: null Subject Start: 345 Subject End: 395 .......................................................................................................................................................................................................................................................................................... I Y H M A R H T F A T M - S L S K G V P I E S V S K M L G H T N I K T T Q I Y A R I T N K K I E Q D M ................................................................................................................................................................. .......................................................................................................................................................................................................................................................................................... V Y H M G R H S F A S L V T L E E G V P I E T I C K M L G H S N I K T T Q I Y A R V T P K K L F E D M ................................................................................................................................................................. Subject: gi|86130576|ref|ZP_01049176.1| putative transposase [Cellulophaga sp. MED134] HSP 1 e-value: 1.0E-13 bit: 72.8 Len: 168 Query Start:286 Query End:453 Subject Strand: null Subject Start: 349 Subject End: 405 ............................................................................................................................................................................................................................................................................................. Y H M A R H T F A T - M S L S K G V P I E S V S K M L G H T N I K T T Q I Y A R I T N K K I E Q D M L K L S D K L ............................................................................................................................................ ............................................................................................................................................................................................................................................................................................. F H M A R H T F A T T I T L S N G V P I E T V S K L L G H S K I A T T Q I Y A R V L E H K V S N D M D I L K N K L ............................................................................................................................................ Subject: UniRef90_UPI000068AC16 Cluster: putative transposase; n=1; Cellulophaga sp. MED134|Rep: putative transposase - Cellulophaga sp. MED134 HSP 1 e-value: 1.0E-13 bit: 72.8 Len: 168 Query Start:286 Query End:453 Subject Strand: null Subject Start: 349 Subject End: 405 ............................................................................................................................................................................................................................................................................................. Y H M A R H T F A T - M S L S K G V P I E S V S K M L G H T N I K T T Q I Y A R I T N K K I E Q D M L K L S D K L ............................................................................................................................................ ............................................................................................................................................................................................................................................................................................. F H M A R H T F A T T I T L S N G V P I E T V S K L L G H S K I A T T Q I Y A R V L E H K V S N D M D I L K N K L ............................................................................................................................................ Subject: gi|60681325|ref|YP_211469.1| putative bacteriophage integrase [Bacteroides fragilis NCTC 9343] HSP 1 e-value: 2.0E-13 bit: 72.0 Len: 303 Query Start:181 Query End:483 Subject Strand: null Subject Start: 315 Subject End: 409 .................................................................................................................................................................................... V L P I P I C R R T * K N N * F T T S Y H I S T Y V P L T L A * A C I Y H M A R H T F A T - M S L S K G V P I E S V S K M L G H T N I K T T Q I Y A R I T N K K I E Q D M L K L S D K L D I F R S P V S Q A .............................................................................................................. .................................................................................................................................................................................... L L P V P - C Y P N C K N G I K V I A K H C G I D K N V T - - - - - - W H Q S R H S Y A T T V C L S N D V P I E T L S K M L G H R S I R T T Q I Y A K I T A E K V S R D M E K L S K Q I E Q M E S F I C Q A .............................................................................................................. Subject: gi|60683282|ref|YP_213426.1| putative phage integrase [Bacteroides fragilis NCTC 9343] HSP 1 e-value: 1.0E-10 bit: 63.2 Len: 165 Query Start:289 Query End:453 Subject Strand: null Subject Start: 347 Subject End: 401 ................................................................................................................................................................................................................................................................................................ H M A R H T F A T M S L S K G V P I E S V S K M L G H T N I K T T Q I Y A R I T N K K I E Q D M L K L S D K L ............................................................................................................................................ ................................................................................................................................................................................................................................................................................................ H I G R H T F A V L A I L K G M P L E T L Q K V L G H N S I L S T Q V Y A E L I N P K V G E D T D K L C E K I ............................................................................................................................................ Subject: gi|29350147|ref|NP_813650.1| transposase [Bacteroides thetaiotaomicron VPI-5482] HSP 1 e-value: 3.0E-10 bit: 62.0 Len: 153 Query Start:289 Query End:441 Subject Strand: null Subject Start: 349 Subject End: 399 ................................................................................................................................................................................................................................................................................................ H M A R H T F A T M S L S K G V P I E S V S K M L G H T N I K T T Q I Y A R I T N K K I E Q D M L K L ........................................................................................................................................................ ................................................................................................................................................................................................................................................................................................ H V G R H T F A T F A L A N G V S I E S V A K M L G H T N V Q M T R H Y A R V L D R T V I R E M S Q I ........................................................................................................................................................ Subject: UniRef90_Q89YJ2 Cluster: Transposase; n=1; Bacteroides thetaiotaomicron|Rep: Transposase - Bacteroides thetaiotaomicron HSP 1 e-value: 3.0E-10 bit: 62.0 Len: 153 Query Start:289 Query End:441 Subject Strand: null Subject Start: 349 Subject End: 399 ................................................................................................................................................................................................................................................................................................ H M A R H T F A T M S L S K G V P I E S V S K M L G H T N I K T T Q I Y A R I T N K K I E Q D M L K L ........................................................................................................................................................ ................................................................................................................................................................................................................................................................................................ H V G R H T F A T F A L A N G V S I E S V A K M L G H T N V Q M T R H Y A R V L D R T V I R E M S Q I ........................................................................................................................................................ Subject: gi|60681287|ref|YP_211431.1| putative bacteriophage integrase [Bacteroides fragilis NCTC 9343] HSP 1 e-value: 6.0E-10 bit: 60.8 Len: 201 Query Start:286 Query End:486 Subject Strand: null Subject Start: 347 Subject End: 414 ............................................................................................................................................................................................................................................................................................. Y H M A R H T F A T - M S L S K G V P I E S V S K M L G H T N I K T T Q I Y A R I T N K K I E Q D M L K L S D K L D I F R S P V S Q A K ........................................................................................................... ............................................................................................................................................................................................................................................................................................. F H L S R H T F A T T V Y L C N G G T I E A L S K I L G H K H I S T T Q I Y A E V T N R M V S S D F R A I S G N L A A M Q R S V L E K K ........................................................................................................... Subject: gi|60680159|ref|YP_210303.1| putative integrase/transposase [Bacteroides fragilis NCTC 9343] HSP 1 e-value: 2.0E-7 bit: 52.8 Len: 153 Query Start:286 Query End:438 Subject Strand: null Subject Start: 333 Subject End: 383 ............................................................................................................................................................................................................................................................................................. Y H M A R H T F A T M S L S K G V P I E S V S K M L G H T N I K T T Q I Y A R I T N K K I E Q D M L K ........................................................................................................................................................... ............................................................................................................................................................................................................................................................................................. F H T A R H T N A T L L I Y S G V N I T T V Q K L L G H K S V K T T Q V Y T N I M D I T I V R D L E K ........................................................................................................................................................... Subject: gi|29347986|ref|NP_811489.1| transposase [Bacteroides thetaiotaomicron VPI-5482] HSP 1 e-value: 2.0E-7 bit: 52.8 Len: 165 Query Start:289 Query End:453 Subject Strand: null Subject Start: 354 Subject End: 409 ................................................................................................................................................................................................................................................................................................ H M A R H T F A T - M S L S K G V P I E S V S K M L G H T N I K T T Q I Y A R I T N K K I E Q D M L K L S D K L ............................................................................................................................................ ................................................................................................................................................................................................................................................................................................ H A G R H T F G T T I T L A N N V P L Q D V S V M L G H A S T R M T Q H Y A R V M N A S L K K S M L N V K K R L ............................................................................................................................................ Subject: UniRef90_Q8A4M3 Cluster: Transposase; n=1; Bacteroides thetaiotaomicron|Rep: Transposase - Bacteroides thetaiotaomicron HSP 1 e-value: 2.0E-7 bit: 52.8 Len: 165 Query Start:289 Query End:453 Subject Strand: null Subject Start: 354 Subject End: 409 ................................................................................................................................................................................................................................................................................................ H M A R H T F A T - M S L S K G V P I E S V S K M L G H T N I K T T Q I Y A R I T N K K I E Q D M L K L S D K L ............................................................................................................................................ ................................................................................................................................................................................................................................................................................................ H A G R H T F G T T I T L A N N V P L Q D V S V M L G H A S T R M T Q H Y A R V M N A S L K K S M L N V K K R L ............................................................................................................................................ Subject: UniRef90_Q64YL1 Cluster: Tyrosine type site-specific recombinase; n=2; Bacteroides fragilis|Rep: Tyrosine type site-specific recombinase - Bacteroides fragilis HSP 1 e-value: 2.0E-7 bit: 52.8 Len: 153 Query Start:286 Query End:438 Subject Strand: null Subject Start: 333 Subject End: 383 ............................................................................................................................................................................................................................................................................................. Y H M A R H T F A T M S L S K G V P I E S V S K M L G H T N I K T T Q I Y A R I T N K K I E Q D M L K ........................................................................................................................................................... ............................................................................................................................................................................................................................................................................................. F H T A R H T N A T L L I Y S G V N I T T V Q K L L G H K S V K T T Q V Y T N I M D I T I V R D L E K ........................................................................................................................................................... Subject: gi|60681592|ref|YP_211736.1| putative bacteriophage integrase [Bacteroides fragilis NCTC 9343] HSP 1 e-value: 3.0E-7 bit: 51.6 Len: 153 Query Start:289 Query End:441 Subject Strand: null Subject Start: 360 Subject End: 411 ................................................................................................................................................................................................................................................................................................ H M A R H T F A T M S - L S K G V P I E S V S K M L G H T N I K T T Q I Y A R I T N K K I E Q D M L K L ........................................................................................................................................................ ................................................................................................................................................................................................................................................................................................ H V A R H T A A T I V F L A N D V S M E N V S K I L G H S N I R M T Q H Y A K V L D S S I M R D M V N V ........................................................................................................................................................ Subject: gi|77454861|ref|YP_345729.1| putative transposase [Rhodococcus erythropolis PR4] HSP 1 e-value: 4.0E-7 bit: 51.2 Len: 180 Query Start:289 Query End:468 Subject Strand: null Subject Start: 458 Subject End: 517 ................................................................................................................................................................................................................................................................................................ H M A R H T F A T M S L S K G V P I E S V S K M L G H T N I K T T Q I Y A R I T N K K I E Q D M L K L S D K L D I F R S ............................................................................................................................. ................................................................................................................................................................................................................................................................................................ H Q L R H T L A T Q A I N R G M S L E A I A A L L G H K T M E M T M V Y A R I A D R T V A D Q Y F S V T E K V E A L Y S ............................................................................................................................. Subject: UniRef90_Q3L976 Cluster: Putative transposase; n=1; Rhodococcus erythropolis PR4|Rep: Putative transposase - Rhodococcus erythropolis (strain PR4) HSP 1 e-value: 4.0E-7 bit: 51.2 Len: 180 Query Start:289 Query End:468 Subject Strand: null Subject Start: 458 Subject End: 517 ................................................................................................................................................................................................................................................................................................ H M A R H T F A T M S L S K G V P I E S V S K M L G H T N I K T T Q I Y A R I T N K K I E Q D M L K L S D K L D I F R S ............................................................................................................................. ................................................................................................................................................................................................................................................................................................ H Q L R H T L A T Q A I N R G M S L E A I A A L L G H K T M E M T M V Y A R I A D R T V A D Q Y F S V T E K V E A L Y S ............................................................................................................................. Subject: gi|86144157|ref|ZP_01062494.1| transposase [Flavobacterium sp. MED217] HSP 1 e-value: 1.0E-6 bit: 49.7 Len: 114 Query Start:289 Query End:402 Subject Strand: null Subject Start: 351 Subject End: 388 ................................................................................................................................................................................................................................................................................................ H M A R H T F A T M S L S K G V P I E S V S K M L G H T N I K T T Q I Y A R ............................................................................................................................................................................................... ................................................................................................................................................................................................................................................................................................ Y V A R H S F A T Q A M L Q E V P L Q A I S E M L G H T S L N T T Q V Y L K ............................................................................................................................................................................................... Subject: UniRef90_UPI000068E946 Cluster: transposase; n=1; Leeuwenhoekiella blandensis MED217|Rep: transposase - Flavobacterium sp. MED217 HSP 1 e-value: 1.0E-6 bit: 49.7 Len: 114 Query Start:289 Query End:402 Subject Strand: null Subject Start: 351 Subject End: 388 ................................................................................................................................................................................................................................................................................................ H M A R H T F A T M S L S K G V P I E S V S K M L G H T N I K T T Q I Y A R ............................................................................................................................................................................................... ................................................................................................................................................................................................................................................................................................ Y V A R H S F A T Q A M L Q E V P L Q A I S E M L G H T S L N T T Q V Y L K ............................................................................................................................................................................................... Find nr database================================================ Query_seq: PG1454:PG1457|PG1454:PG1457:integrase:hypothetical protein:<-->:1538197..1538789 593 acgctttaactttatgggcaaaattacccgttatcaaagcgttctctgatacgcaaaatattgataaacagataaaaagaaaccgtatgagaaaaattcttccaataatcattacctcagtttgttcgggaaacaacaggataacggtttggtaactgaaaggtctcaatatcccatactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatgacttgaaattgaatacaaattctataaatcaatgatatgaatacaataacagcagatgtaagcgtcatccggaataaaattcttgagattcgtggcaacaga Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 acgctttaactttatgggcaaaattacccgttatcaaagcgttctctgatacgcaaaatattgataaacagataaaaagaaaccgtatgagaaaaattcttccaataatcattacctcagtttgttcgggaaacaacaggataacggtttggtaactgaaaggtctcaatatcccatactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatgacttgaaattgaatacaaattctataaatcaatgatatgaatacaataacagcagatgtaagcgtcatccggaataaaattcttgagattcgtggcaacaga Predict ORF larger than 30AA ================================================ Protein_Len: 40 Strand: + Start: 33 End: 152 ................................ M K A F S D T Q N I D K Q I K R N R M R K I L P I I I T S V C S G N N R I T V W ......................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 122 End: 322 ......................................................................................................................... M F G K Q Q D N G L V T E R S Q Y P I L F C L S L S V A E H R K T T N S Q P V T I F P P M F L L R L L R L V F T T W P G ............................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 156 End: 410 ........................................................................................................................................................... M K G L N I P Y C F A Y P Y L S Q N I E K Q L I H N Q L P Y F H L C S S Y A C L G L Y L P H G P A H I C H D V F E Q R R ....................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 283 End: 489 .......................................................................................................................................................................................................................................................................................... M Y H M A R H T F A T M S L S K G V P I E S V S K M L G H T N I K T T Q I Y A R I T N K K I E Q D M L K L S D K L D I F ........................................................................................................ Protein_Len: 43 Strand: - Start: 464 End: 592 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................... I E P T V L L V I V Q F Q I C I R Y I L S I F V I V A S T L T M R F L I R S I R P L M . Protein_Len: 38 Strand: - Start: 396 End: 509 ........................................................................................................................................................................................................................................................................................................................................................................................................... A R I V L L F I S C S M S L S D S L S S I N L D G T D C A F C H S S I S Y M .................................................................................... Protein_Len: 35 Strand: - Start: 288 End: 392 ............................................................................................................................................................................................................................................................................................... W M A R C V N A V I D K L L P T G M S D T D F I S P C V L I L V V C M ......................................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 169 End: 426 ........................................................................................................................................................................ G G I N R K R K S L S T N V V H G P V C K G R H R Q A F A N G D F G H R L H Q S V G I D F R R L N V G T D G I F L Y F M ....................................................................................................................................................................... Protein_Len: 34 Strand: - Start: 120 End: 221 ....................................................................................................................... N T R S V V P Y R N P L Q F T E I D W V T K G I G I Q R L V Y F F M .................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 57 Strand: - Start: 2 End: 172 . A K V K H A F N G T I L A N E S V C F I S L C I F L F R I L F I R G I I M V E T Q E P F L L I V T Q Y S F P R L M ..................................................................................................................................................................................................................................................................................................................................................................................................................................... acgctttaactttatgggcaaaattacccgttatcaaagcgttctctgatacgcaaaatattgataaacagataaaaagaaaccgtatgagaaaaattcttccaataatcattacctcagtttgttcgggaaacaacaggataacggtttggtaactgaaaggtctcaatatcccatactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatgacttgaaattgaatacaaattctataaatcaatgatatgaatacaataacagcagatgtaagcgtcatccggaataaaattcttgagattcgtggcaacaga Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ acgctttaactttatgggcaaaattacccgttatcaaagcgttctctgatacgcaaaatattgataaacagataaaaagaaaccgtatgagaaaaattcttccaataatcattacctcagtttgttcgggaaacaacaggataacggtttggtaactgaaaggtctcaatatcccatactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatgacttgaaattgaatacaaattctataaatcaatgatatgaatacaataacagcagatgtaagcgtcatccggaataaaattcttgagattcgtggcaacaga Predict TransTerm conf > 70================================================ Find igs database================================================ Query_seq: PG1454:PG1457|PG1454:PG1457:integrase:hypothetical protein:<-->:1538197..1538789 593 acgctttaactttatgggcaaaattacccgttatcaaagcgttctctgatacgcaaaatattgataaacagataaaaagaaaccgtatgagaaaaattcttccaataatcattacctcagtttgttcgggaaacaacaggataacggtttggtaactgaaaggtctcaatatcccatactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatgacttgaaattgaatacaaattctataaatcaatgatatgaatacaataacagcagatgtaagcgtcatccggaataaaattcttgagattcgtggcaacaga Intra-Species Hit: Count: 2 Min: 1 Max: 593 Len: 593 Subject: NC_002950_PG1454_PG1457|integrase:hypothetical protein|NEGATIVE:POSITIVE|[1538197,1538789]|593 HSP 1 e-value: 3.0E-97 bit: 357.0 Len: 180 Query Start:1 Query End:180 Subject Strand: POSITIVE Subject Start: 1 Subject End: 180 acgctttaactttatgggcaaaattacccgttatcaaagcgttctctgatacgcaaaatattgataaacagataaaaagaaaccgtatgagaaaaattcttccaataatcattacctcagtttgttcgggaaacaacaggataacggtttggtaactgaaaggtctcaatatcccatact............................................................................................................................................................................................................................................................................................................................................................................................................................. acgctttaactttatgggcaaaattacccgttatcaaagcgttctctgatacgcaaaatattgataaacagataaaaagaaaccgtatgagaaaaattcttccaataatcattacctcagtttgttcgggaaacaacaggataacggtttggtaactgaaaggtctcaatatcccatact............................................................................................................................................................................................................................................................................................................................................................................................................................. HSP 2 e-value: 1.0E-53 bit: 212.0 Len: 107 Query Start:487 Query End:593 Subject Strand: POSITIVE Subject Start: 487 Subject End: 593 ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................caatgacttgaaattgaatacaaattctataaatcaatgatatgaatacaataacagcagatgtaagcgtcatccggaataaaattcttgagattcgtggcaacaga ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................caatgacttgaaattgaatacaaattctataaatcaatgatatgaatacaataacagcagatgtaagcgtcatccggaataaaattcttgagattcgtggcaacaga Subject: NC_002950_PG0816_PG0819|hypothetical protein:integrase|NEGATIVE:POSITIVE|[876950,877465]|516 HSP 1 e-value: 3.0E-97 bit: 357.0 Len: 180 Query Start:1 Query End:180 Subject Strand: NEGATIVE Subject Start: 337 Subject End: 516 acgctttaactttatgggcaaaattacccgttatcaaagcgttctctgatacgcaaaatattgataaacagataaaaagaaaccgtatgagaaaaattcttccaataatcattacctcagtttgttcgggaaacaacaggataacggtttggtaactgaaaggtctcaatatcccatact............................................................................................................................................................................................................................................................................................................................................................................................................................. acgctttaactttatgggcaaaattacccgttatcaaagcgttctctgatacgcaaaatattgataaacagataaaaagaaaccgtatgagaaaaattcttccaataatcattacctcagtttgttcgggaaacaacaggataacggtttggtaactgaaaggtctcaatatcccatact............................................................................................................................................................................................................................................................................................................................................................................................................................. Inter-species Hit: Count: 1 Min: 1 Max: 119 Len: 119 Subject: pint_PI0387_PI0388|hypothetical protein:integrase|POSITIVE:POSITIVE|[354873,355066]|194 HSP 1 e-value: 2.0E-58 bit: 228.0 Len: 119 Query Start:1 Query End:119 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 119 acgctttaactttatgggcaaaattacccgttatcaaagcgttctctgatacgcaaaatattgataaacagataaaaagaaaccgtatgagaaaaattcttccaataatcattacctca.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... acgctttaactttatgggcaaaattacccgttatcaaagcgttctctgatacgcaaaatattgataaacagataagaagaaaccgtatgagaaaaattcttccaataatcattacctca.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ ACGCUUUAACUUUAUGGGCAAAAUUACCCGUUAUCAAAGCGUUCUCUGAUACGCAAAAUAUUGAUAAACAGAUAAAAAGAAACCGUAUGAGAAAAAUUCUUCCAAUAAUCAUUACCUCA (((((((......(((((........)))))....)))))))..(((.(((((..........((......))..........))))).)))........................... (-17.95) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UGAGGUAAUGAUUAUUGGAAGAAUUUUUCUCAUACGGUUUCUUUUUAUCUGUUUAUCAAUAUUUUGCGUAUCAGAGAACGCUUUGAUAACGGGUAAUUUUGCCCAUAAAGUUAAAGCGU (((((....((((........))))..)))))...............((((..((((((....))).))).))))..((((((((((...(((((....))))).....)))))))))) (-23.80) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 854 50 1 141 92 NC_002950:PG1454|5end_integrase_1538106..1538336_NEGATIVE 854 50 1 141 92 NC_002950:PG0819|5end_integrase_877326..877556_POSITIVE 284 50 3 152 104 NC_002950:PG2035|5end_tRNA_(guanine-N(1)-)-methyltransferase_2135852..2136082_POSITIVE 264 49 2 230 196 NC_002950:PG1944|5end_3-phosphoshikimate_1-carboxyvinyltransferase_2030416..2030646_POSITIVE 264 54 16 191 151 NC_002950:PG1720|5end_hypothetical_protein_1808615..1808845_POSITIVE 259 48 2 168 109 NC_002950:PG1852|5end_exonuclease_1951973..1952203_NEGATIVE 258 66 28 68 30 NC_002950:PG1741|5end_aspartate_ammonia-lyase_1827283..1827513_NEGATIVE 239 55 23 111 74 NC_002950:PG0229|5end_hypothetical_protein_264872..265102_POSITIVE 238 47 1 217 170 NC_002950:PG0215|5end_hypothetical_protein_251460..251690_POSITIVE 236 40 2 179 132 NC_002950:PG1963|5end_Sua5/YciO/YrdC/YwlC_family_protein_2052338..2052568_POSITIVE 235 48 3 194 143 NC_002950:PG0171|5end_5'-nucleotidase_family_protein_191724..191954_POSITIVE 231 47 15 36 1 NC_002950:PG0997|5end_transcriptional_regulator,_putative_1056666..1056896_POSITIVE 230 50 1 176 137 NC_002950:PG1143|5end_sugar_dehydrogenase,_UDP-glucose/GDP-mannose_dehydrogenase_family_1227198..1227428_NEGATIVE 230 42 1 59 23 NC_002950:PG0855|5end_hypothetical_protein_916055..916285_NEGATIVE 230 54 14 164 122 NC_002950:PG0348|5end_ATP-dependent_DNA_helicase_RecG_382345..382575_POSITIVE 229 48 10 58 22 NC_002950:PG1931|5end_50S_ribosomal_protein_L16_2020849..2021079_NEGATIVE 228 53 14 46 3 NC_002950:PG1249|5end_1-acyl-sn-glycerol-3-phosphate_acetyltransferase,_putative_1327161..1327391_NEGATIVE 227 49 3 98 30 NC_002950:PG0951|5end_phosphoribosylaminoimidazole_carboxylase,_PurE_protein_1010242..1010472_POSITIVE 227 57 13 187 139 NC_002950:PG0525|5end_CTP_synthetase_568999..569229_POSITIVE 224 60 16 171 113 NC_002950:PG0849|5end_hypothetical_protein_911242..911472_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 230 54 14 121 79 NC_002950:PG0347|3end_UDP-glucose_4-epimerase_382382..382532_POSITIVE 229 48 10 37 1 NC_002950:PG1932|3end_ribosomal_protein_S3_2020870..2021020_NEGATIVE 227 49 3 97 29 NC_002950:PG0950|3end_glycine_cleavage_system_protein_H_1010321..1010471_POSITIVE 227 57 13 71 23 NC_002950:PG0524|3end_hypothetical_protein_568963..569113_POSITIVE 224 60 16 143 85 NC_002950:PG0850|3end_DNA_binding_protein,_excisionase_family,_putative_911270..911420_NEGATIVE 223 54 27 82 57 NC_002950:PG2068|3end_glycerol-3-phosphate_cytidylyltransferase_2164872..2165022_POSITIVE 219 55 13 53 10 NC_002950:PG0338|3end_hypothetical_protein_375137..375287_POSITIVE 217 55 14 113 64 NC_002950:PG0890|3end_alkaline_phosphatase,_putative_953103..953253_POSITIVE 213 56 15 41 2 NC_002950:PG1364|3end_1-deoxy-D-xylulose_5-phosphate_reductoisomerase_1444388..1444538_NEGATIVE 212 48 3 147 89 NC_002950:PG0769|3end_fibronectin_type_III_domain_protein_822555..822705_NEGATIVE 211 44 3 71 29 NC_002950:PG0896|3end_beta-galactosidase_960382..960532_POSITIVE 210 48 3 147 99 NC_002950:PG0785|3end_tonB_protein,_putative_836900..837050_NEGATIVE 208 46 4 137 85 NC_002950:PG1154|3end_hypothetical_protein_1235697..1235847_NEGATIVE 207 50 2 75 21 NC_002950:PG1778|3end_hypothetical_protein_1867922..1868072_POSITIVE 206 50 3 63 26 NC_002950:PG1474|3end_conjugative_transposon_protein_TraO_1550238..1550388_NEGATIVE 204 48 2 143 111 NC_002950:PG1431|3end_DNA-binding_response_regulator,_LuxR_family_1515986..1516136_NEGATIVE 202 92 52 73 27 NC_002950:PG1653|3end_hypothetical_protein_1736458..1736608_POSITIVE 201 49 2 108 74 NC_002950:PG1726|3end_PDZ_domain_protein_1816779..1816929_POSITIVE 201 50 2 142 86 NC_002950:PG0969|3end_S-adenosylmethionine:tRNA_ribosyltransferase-isomerase,_putative_1028201..1028351_NEGATIVE 200 50 2 89 39 NC_002950:PG1055|3end_thiol_protease_1121202..1121352_NEGATIVE