Origin IGS: tataggtgtgtaagtagaactgtttcagactacaataaaagtagtttaacacaattctgtttacattctattcctcacattctattatatgttttcgcatcgaatcattcgtatcgttttcttcggcaaaggtagtttcgttgtactgcgggcaacaaggtcaagcgacaagccgttagggcaacaatctccacacttcattcttcaggtagtattcttgccctaaaccttgttgtcctagccacctaacctttttattgcctcgaaacgaaaacgaccgacccgacggaaagacgcataaaaaaaggtcggatatgcgagaagcaggtaaaaagaaaatggaaactcaactccctctcctctggaatccgcataaaatcaaaaaaaaatcagacaagatgaaacagagatacaaaatatcaatttgggtggcacttgcactctcaggctctctcctttggggcggaagcgtctggctttagctggcagggatatgtgtggaaaatttcctcattcggctgctccttaccatcgctttggctatcgcagtgtacattctgacttatgccctcgttatggttgcactttatgcccctatttcatgtataaagaatgaacccaattggaacgtaaattgggctttctccactcaccccgaagtaaggacgggacggataactgttcaagataaacagacggagtaaagcggtcggcggatttgccgaccgctcctctctttcgtgagcatcgggcggacaaagaaaggagcaaagaaaccccaatgaaaaacacttcgttacttttgacagtgagttgagacagctcaaaagtaacaaaaagccaaaattagagatataaaa .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 ttttatatctctaattttggctttttgttacttttgagctgtctcaactcactgtcaaaagtaacgaagtgtttttcattggggtttctttgctcctttctttgtccgcccgatgctcacgaaagagaggagcggtcggcaaatccgccgaccgctttactccgtctgtttatcttgaacagttatccgtcccgtccttacttcggggtgagtggagaaagcccaatttacgttccaattgggttcattctttatacatgaaataggggcataaagtgcaaccataacgagggcataagtcagaatgtacactgcgatagccaaagcgatggtaaggagcagccgaatgaggaaattttccacacatatccctgccagctaaagccagacgcttccgccccaaaggagagagcctgagagtgcaagtgccacccaaattgatattttgtatctctgtttcatcttgtctgatttttttttgattttatgcggattccagaggagagggagttgagtttccattttctttttacctgcttctcgcatatccgacctttttttatgcgtctttccgtcgggtcggtcgttttcgtttcgaggcaataaaaaggttaggtggctaggacaacaaggtttagggcaagaatactacctgaagaatgaagtgtggagattgttgccctaacggcttgtcgcttgaccttgttgcccgcagtacaacgaaactacctttgccgaagaaaacgatacgaatgattcgatgcgaaaacatataatagaatgtgaggaatagaatgtaaacagaattgtgttaaactacttttattgtagtctgaaacagttctacttacacacctata Mask Tandem Repeat Region ================================================ tataggtgtgtaagtagaactgtttcagactacaataaaagtagtttaacacaattctgtttacattctattcctcacattctattatatgttttcgcatcgaatcattcgtatcgttttcttcggcaaaggtagtttcgttgtactgcgggcaacaaggtcaagcgacaagccgttagggcaacaatctccacacttcattcttcaggtagtattcttgccctaaaccttgttgtcctagccacctaacctttttattgcctcgaaacgaaaacgaccgacccgacggaaagacgcataaaaaaaggtcggatatgcgagaagcaggtaaaaagaaaatggaaactcaactccctctcctctggaatccgcataaaatcaaaaaaaaatcagacaagatgaaacagagatacaaaatatcaatttgggtggcacttgcactctcaggctctctcctttggggcggaagcgtctggctttagctggcagggatatgtgtggaaaatttcctcattcggctgctccttaccatcgctttggctatcgcagtgtacattctgacttatgccctcgttatggttgcactttatgcccctatttcatgtataaagaatgaacccaattggaacgtaaattgggctttctccactcaccccgaagtaaggacgggacggataactgttcaagataaacagacggagtaaagcggtcggcggatttgccgaccgctcctctctttcgtgagcatcgggcggacaaagaaaggagcaaagaaaccccaatgaaaaacacttcgttacttttgacagtgagttgagacagctcaaaagtaacaaaaagccaaaattagagatataaaa Find is-nt database================================================ Query_seq: PG1436:PG1439|PG1436:PG1439:ATPase, putative:hypothetical protein:-><-:1523815..1524674 860 tataggtgtgtaagtagaactgtttcagactacaataaaagtagtttaacacaattctgtttacattctattcctcacattctattatatgttttcgcatcgaatcattcgtatcgttttcttcggcaaaggtagtttcgttgtactgcgggcaacaaggtcaagcgacaagccgttagggcaacaatctccacacttcattcttcaggtagtattcttgccctaaaccttgttgtcctagccacctaacctttttattgcctcgaaacgaaaacgaccgacccgacggaaagacgcataaaaaaaggtcggatatgcgagaagcaggtaaaaagaaaatggaaactcaactccctctcctctggaatccgcataaaatcaaaaaaaaatcagacaagatgaaacagagatacaaaatatcaatttgggtggcacttgcactctcaggctctctcctttggggcggaagcgtctggctttagctggcagggatatgtgtggaaaatttcctcattcggctgctccttaccatcgctttggctatcgcagtgtacattctgacttatgccctcgttatggttgcactttatgcccctatttcatgtataaagaatgaacccaattggaacgtaaattgggctttctccactcaccccgaagtaaggacgggacggataactgttcaagataaacagacggagtaaagcggtcggcggatttgccgaccgctcctctctttcgtgagcatcgggcggacaaagaaaggagcaaagaaaccccaatgaaaaacacttcgttacttttgacagtgagttgagacagctcaaaagtaacaaaaagccaaaattagagatataaaa Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PG1436:PG1439|PG1436:PG1439:ATPase, putative:hypothetical protein:-><-:1523815..1524674 860 tataggtgtgtaagtagaactgtttcagactacaataaaagtagtttaacacaattctgtttacattctattcctcacattctattatatgttttcgcatcgaatcattcgtatcgttttcttcggcaaaggtagtttcgttgtactgcgggcaacaaggtcaagcgacaagccgttagggcaacaatctccacacttcattcttcaggtagtattcttgccctaaaccttgttgtcctagccacctaacctttttattgcctcgaaacgaaaacgaccgacccgacggaaagacgcataaaaaaaggtcggatatgcgagaagcaggtaaaaagaaaatggaaactcaactccctctcctctggaatccgcataaaatcaaaaaaaaatcagacaagatgaaacagagatacaaaatatcaatttgggtggcacttgcactctcaggctctctcctttggggcggaagcgtctggctttagctggcagggatatgtgtggaaaatttcctcattcggctgctccttaccatcgctttggctatcgcagtgtacattctgacttatgccctcgttatggttgcactttatgcccctatttcatgtataaagaatgaacccaattggaacgtaaattgggctttctccactcaccccgaagtaaggacgggacggataactgttcaagataaacagacggagtaaagcggtcggcggatttgccgaccgctcctctctttcgtgagcatcgggcggacaaagaaaggagcaaagaaaccccaatgaaaaacacttcgttacttttgacagtgagttgagacagctcaaaagtaacaaaaagccaaaattagagatataaaa Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PG1436:PG1439|PG1436:PG1439:ATPase, putative:hypothetical protein:-><-:1523815..1524674 860 tataggtgtgtaagtagaactgtttcagactacaataaaagtagtttaacacaattctgtttacattctattcctcacattctattatatgttttcgcatcgaatcattcgtatcgttttcttcggcaaaggtagtttcgttgtactgcgggcaacaaggtcaagcgacaagccgttagggcaacaatctccacacttcattcttcaggtagtattcttgccctaaaccttgttgtcctagccacctaacctttttattgcctcgaaacgaaaacgaccgacccgacggaaagacgcataaaaaaaggtcggatatgcgagaagcaggtaaaaagaaaatggaaactcaactccctctcctctggaatccgcataaaatcaaaaaaaaatcagacaagatgaaacagagatacaaaatatcaatttgggtggcacttgcactctcaggctctctcctttggggcggaagcgtctggctttagctggcagggatatgtgtggaaaatttcctcattcggctgctccttaccatcgctttggctatcgcagtgtacattctgacttatgccctcgttatggttgcactttatgcccctatttcatgtataaagaatgaacccaattggaacgtaaattgggctttctccactcaccccgaagtaaggacgggacggataactgttcaagataaacagacggagtaaagcggtcggcggatttgccgaccgctcctctctttcgtgagcatcgggcggacaaagaaaggagcaaagaaaccccaatgaaaaacacttcgttacttttgacagtgagttgagacagctcaaaagtaacaaaaagccaaaattagagatataaaa Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 tataggtgtgtaagtagaactgtttcagactacaataaaagtagtttaacacaattctgtttacattctattcctcacattctattatatgttttcgcatcgaatcattcgtatcgttttcttcggcaaaggtagtttcgttgtactgcgggcaacaaggtcaagcgacaagccgttagggcaacaatctccacacttcattcttcaggtagtattcttgccctaaaccttgttgtcctagccacctaacctttttattgcctcgaaacgaaaacgaccgacccgacggaaagacgcataaaaaaaggtcggatatgcgagaagcaggtaaaaagaaaatggaaactcaactccctctcctctggaatccgcataaaatcaaaaaaaaatcagacaagatgaaacagagatacaaaatatcaatttgggtggcacttgcactctcaggctctctcctttggggcggaagcgtctggctttagctggcagggatatgtgtggaaaatttcctcattcggctgctccttaccatcgctttggctatcgcagtgtacattctgacttatgccctcgttatggttgcactttatgcccctatttcatgtataaagaatgaacccaattggaacgtaaattgggctttctccactcaccccgaagtaaggacgggacggataactgttcaagataaacagacggagtaaagcggtcggcggatttgccgaccgctcctctctttcgtgagcatcgggcggacaaagaaaggagcaaagaaaccccaatgaaaaacacttcgttacttttgacagtgagttgagacagctcaaaagtaacaaaaagccaaaattagagatataaaa Predict ORF larger than 30AA ================================================ Protein_Len: 41 Strand: + Start: 54 End: 176 ..................................................... M L F T F Y S S H S I I C F R I E S F V S F S S A K V V S L Y C G Q Q G Q A T S R ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 53 Strand: + Start: 65 End: 223 ................................................................ M L F L T F Y Y M F S H R I I R I V F F G K G S F V V L R A T R S S D K P L G Q Q S P H F I L Q V V F L P ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 34 Strand: + Start: 298 End: 399 ......................................................................................................................................................................................................................................................................................................... M K K G R I C E K Q V K R K W K L N S L S S G I R I K S K K N Q T R ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 60 Strand: + Start: 258 End: 479 ................................................................................................................................................................................................................................................................. M P R N E N D R P D G K T H K K R S D M R E A G K K K M E T Q L P L L W N P H K I K K K S D K M K Q R Y K I S I W V A L ............................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 41 Strand: + Start: 436 End: 558 ................................................................................................................................................................................................................................................................................................................................................................................................................................................... M H S Q A L S F G A E A S G F S W Q G Y V W K I S S F G C S L P S L W L S Q C T F .............................................................................................................................................................................................................................................................................................................. Protein_Len: 60 Strand: + Start: 389 End: 613 .................................................................................................................................................................................................................................................................................................................................................................................................... M R Q D E T E I Q N I N L G G T C T L R L S P L G R K R L A L A G R D M C G K F P H S A A P Y H R F G Y R S V H S D L C ....................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 483 End: 701 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M A G I C V E N F L I R L L L T I A L A I A V Y I L T Y A L V M V A L Y A P I S C I K N E P N W N V N W A F S T H P E V ............................................................................................................................................................... Protein_Len: 32 Strand: + Start: 719 End: 814 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M P T A P L F R E H R A D K E R S K E T P M K N T S L L L T V S .............................................. Protein_Len: 60 Strand: - Start: 603 End: 854 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Y S N L I F L R L L A T P P N A S R E E R E H A D P P C L F S C L F G L S F C K T V K S L S N L C S L L L L F G F N S M ...... Protein_Len: 60 Strand: - Start: 598 End: 822 ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... R W E G R L L S P V S L Q E L Y V S P T F R D A S K G V A G R K R S C R A S L S L L L S V G I F F V E N S K V T L Q S M ...................................... Protein_Len: 48 Strand: - Start: 447 End: 590 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................. A R E K P A S A D P K L Q C P Y T H F I E E N P Q E K G D S Q S D C H V N Q S I G E N H N C K M .............................................................................................................................................................................................................................................................................. Protein_Len: 38 Strand: - Start: 382 End: 495 ............................................................................................................................................................................................................................................................................................................................................................................................. F F I L C S S V S I C F I L K P P V Q V R L S E G K P R F R R A K A P L S M ............................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 39 Strand: - Start: 258 End: 374 ................................................................................................................................................................................................................................................................. Q R S V F V V S G V S L R M F F P R I H S F C T F L F H F S L E R E E P I R M ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 54 Strand: - Start: 179 End: 340 .................................................................................................................................................................................. P L L R W V E N K L Y Y E Q G L G Q Q G L W R V K K N G R F S F S R G S P F V C L F L D S I R S A P L F F M ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 38 Strand: - Start: 88 End: 201 ....................................................................................... I N E C R I M R I T K K P L P L K T T S R A V L D L S L G N P C C D G C K M ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... tataggtgtgtaagtagaactgtttcagactacaataaaagtagtttaacacaattctgtttacattctattcctcacattctattatatgttttcgcatcgaatcattcgtatcgttttcttcggcaaaggtagtttcgttgtactgcgggcaacaaggtcaagcgacaagccgttagggcaacaatctccacacttcattcttcaggtagtattcttgccctaaaccttgttgtcctagccacctaacctttttattgcctcgaaacgaaaacgaccgacccgacggaaagacgcataaaaaaaggtcggatatgcgagaagcaggtaaaaagaaaatggaaactcaactccctctcctctggaatccgcataaaatcaaaaaaaaatcagacaagatgaaacagagatacaaaatatcaatttgggtggcacttgcactctcaggctctctcctttggggcggaagcgtctggctttagctggcagggatatgtgtggaaaatttcctcattcggctgctccttaccatcgctttggctatcgcagtgtacattctgacttatgccctcgttatggttgcactttatgcccctatttcatgtataaagaatgaacccaattggaacgtaaattgggctttctccactcaccccgaagtaaggacgggacggataactgttcaagataaacagacggagtaaagcggtcggcggatttgccgaccgctcctctctttcgtgagcatcgggcggacaaagaaaggagcaaagaaaccccaatgaaaaacacttcgttacttttgacagtgagttgagacagctcaaaagtaacaaaaagccaaaattagagatataaaa Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: + Score: 84 Start: 59 End: 88 ..........................................................GTTTACATTCTATTCCTCACATTCTATTAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ tataggtgtgtaagtagaactgtttcagactacaataaaagtagtttaacacaattctgtttacattctattcctcacattctattatatgttttcgcatcgaatcattcgtatcgttttcttcggcaaaggtagtttcgttgtactgcgggcaacaaggtcaagcgacaagccgttagggcaacaatctccacacttcattcttcaggtagtattcttgccctaaaccttgttgtcctagccacctaacctttttattgcctcgaaacgaaaacgaccgacccgacggaaagacgcataaaaaaaggtcggatatgcgagaagcaggtaaaaagaaaatggaaactcaactccctctcctctggaatccgcataaaatcaaaaaaaaatcagacaagatgaaacagagatacaaaatatcaatttgggtggcacttgcactctcaggctctctcctttggggcggaagcgtctggctttagctggcagggatatgtgtggaaaatttcctcattcggctgctccttaccatcgctttggctatcgcagtgtacattctgacttatgccctcgttatggttgcactttatgcccctatttcatgtataaagaatgaacccaattggaacgtaaattgggctttctccactcaccccgaagtaaggacgggacggataactgttcaagataaacagacggagtaaagcggtcggcggatttgccgaccgctcctctctttcgtgagcatcgggcggacaaagaaaggagcaaagaaaccccaatgaaaaacacttcgttacttttgacagtgagttgagacagctcaaaagtaacaaaaagccaaaattagagatataaaa Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 41 HP_score: -2.7 Tail_Score: -2.71483 Start: 17 End: 57 Full_Region: aatagaatgtaaaca gaattgtgttaaactac ttttatt gtagtctgaaacagttc tacttacacacctat ................gaattgtgttaaactacttttattgtagtctgaaacagttc................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 55 HP_score: -4.5 Tail_Score: -3.65699 Start: 618 End: 639 Full_Region: ggtgagtggagaaag cccaatt tacgttcc aattggg ttcattctttataca .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cccaatttacgttccaattggg............................................................................................................................................................................................................................. TransTerm Strand: + Conf: 48 HP_score: -4.5 Tail_Score: -2.93393 Start: 618 End: 639 Full_Region: TGTATAAAGAATGAA CCCAATT GGAACGTA AATTGGG CTTTCTCCACTCACC .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAATTGGAACGTAAATTGGG............................................................................................................................................................................................................................. TransTerm Strand: - Conf: 82 HP_score: -9.0 Tail_Score: -4.19177 Start: 693 End: 743 Full_Region: tgtccgcccgatgct cacgaaagagaggagcggtcggc aaatcc gccgaccgctttactccgtctg tttatcttgaacagt ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cacgaaagagaggagcggtcggcaaatccgccgaccgctttactccgtctg..................................................................................................................... TransTerm Strand: + Conf: 93 HP_score: -11.9 Tail_Score: -3.73775 Start: 699 End: 736 Full_Region: CAAGATAAACAGACG GAGTAAAGCGGTCGGCG GATT TGCCGACCGCTCCTCTC TTTCGTGAGCATCGG ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTAAAGCGGTCGGCGGATTTGCCGACCGCTCCTCTC............................................................................................................................ TransTerm Strand: + Conf: 100 HP_score: -16.0 Tail_Score: -2.82279 Start: 706 End: 729 Full_Region: AACAGACGGAGTAAA GCGGTCGGCG GATT TGCCGACCGC TCCTCTCTTTCGTGA .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGTCGGCGGATTTGCCGACCGC................................................................................................................................... TransTerm Strand: - Conf: 100 HP_score: -15.3 Tail_Score: -3.79138 Start: 706 End: 729 Full_Region: tcacgaaagagagga gcggtcggc aaatcc gccgaccgc tttactccgtctgtt .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gcggtcggcaaatccgccgaccgc................................................................................................................................... TransTerm Strand: - Conf: 66 HP_score: -2.1 Tail_Score: -4.87893 Start: 790 End: 840 Full_Region: tatctctaattttgg ctttttgttacttttgagctgt ctcaactc actgtcaaaagtaacgaagtg tttttcattggggtt .....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ctttttgttacttttgagctgtctcaactcactgtcaaaagtaacgaagtg.................... TransTerm Strand: - Conf: 57 HP_score: -3.3 Tail_Score: -4.05402 Start: 792 End: 838 Full_Region: tctctaattttggct ttttgttacttttgagctgt ctcaactc actgtcaaaagtaacgaag tgtttttcattgggg .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttttgttacttttgagctgtctcaactcactgtcaaaagtaacgaag...................... TransTerm Strand: - Conf: 49 HP_score: -4.6 Tail_Score: -3.02518 Start: 793 End: 837 Full_Region: ctctaattttggctt tttgttacttttgagctgt ctcaactc actgtcaaaagtaacgaa gtgtttttcattggg ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tttgttacttttgagctgtctcaactcactgtcaaaagtaacgaa....................... Find igs database================================================ Query_seq: PG1436:PG1439|PG1436:PG1439:ATPase, putative:hypothetical protein:-><-:1523815..1524674 860 tataggtgtgtaagtagaactgtttcagactacaataaaagtagtttaacacaattctgtttacattctattcctcacattctattatatgttttcgcatcgaatcattcgtatcgttttcttcggcaaaggtagtttcgttgtactgcgggcaacaaggtcaagcgacaagccgttagggcaacaatctccacacttcattcttcaggtagtattcttgccctaaaccttgttgtcctagccacctaacctttttattgcctcgaaacgaaaacgaccgacccgacggaaagacgcataaaaaaaggtcggatatgcgagaagcaggtaaaaagaaaatggaaactcaactccctctcctctggaatccgcataaaatcaaaaaaaaatcagacaagatgaaacagagatacaaaatatcaatttgggtggcacttgcactctcaggctctctcctttggggcggaagcgtctggctttagctggcagggatatgtgtggaaaatttcctcattcggctgctccttaccatcgctttggctatcgcagtgtacattctgacttatgccctcgttatggttgcactttatgcccctatttcatgtataaagaatgaacccaattggaacgtaaattgggctttctccactcaccccgaagtaaggacgggacggataactgttcaagataaacagacggagtaaagcggtcggcggatttgccgaccgctcctctctttcgtgagcatcgggcggacaaagaaaggagcaaagaaaccccaatgaaaaacacttcgttacttttgacagtgagttgagacagctcaaaagtaacaaaaagccaaaattagagatataaaa Intra-Species Hit: Count: 3 Min: 1 Max: 860 Len: 860 Subject: NC_002950_PG1436_PG1439|ATPase, putative:hypothetical protein|POSITIVE:NEGATIVE|[1523815,1524674]|860 HSP 1 e-value: 0.0 bit: 1610.0 Len: 860 Query Start:1 Query End:860 Subject Strand: POSITIVE Subject Start: 1 Subject End: 860 tataggtgtgtaagtagaactgtttcagactacaataaaagtagtttaacacaattctgtttacattctattcctcacattctattatatgttttcgcatcgaatcattcgtatcgttttcttcggcaaaggtagtttcgttgtactgcgggcaacaaggtcaagcgacaagccgttagggcaacaatctccacacttcattcttcaggtagtattcttgccctaaaccttgttgtcctagccacctaacctttttattgcctcgaaacgaaaacgaccgacccgacggaaagacgcatnnnnnnnggtcggatatgcgagaagcaggtaaaaagaaaatggaaactcaactccctctcctctggaatccgcataaaatcnnnnnnnnntcagacaagatgaaacagagatacaaaatatcaatttgggtggcacttgcactctcaggctctctcctttggggcggaagcgtctggctttagctggcagggatatgtgtggaaaatttcctcattcggctgctccttaccatcgctttggctatcgcagtgtacattctgacttatgccctcgttatggttgcactttatgcccctatttcatgtataaagaatgaacccaattggaacgtaaattgggctttctccactcaccccgaagtaaggacgggacggataactgttcaagataaacagacggagtaaagcggtcggcggatttgccgaccgctcctctctttcgtgagcatcgggcggacaaagaaaggagcaaagaaaccccaatgaaaaacacttcgttacttttgacagtgagttgagacagctcaaaagtaacaaaaagccaaaattagagatataaaa tataggtgtgtaagtagaactgtttcagactacaataaaagtagtttaacacaattctgtttacattctattcctcacattctattatatgttttcgcatcgaatcattcgtatcgttttcttcggcaaaggtagtttcgttgtactgcgggcaacaaggtcaagcgacaagccgttagggcaacaatctccacacttcattcttcaggtagtattcttgccctaaaccttgttgtcctagccacctaacctttttattgcctcgaaacgaaaacgaccgacccgacggaaagacgcataaaaaaaggtcggatatgcgagaagcaggtaaaaagaaaatggaaactcaactccctctcctctggaatccgcataaaatcaaaaaaaaatcagacaagatgaaacagagatacaaaatatcaatttgggtggcacttgcactctcaggctctctcctttggggcggaagcgtctggctttagctggcagggatatgtgtggaaaatttcctcattcggctgctccttaccatcgctttggctatcgcagtgtacattctgacttatgccctcgttatggttgcactttatgcccctatttcatgtataaagaatgaacccaattggaacgtaaattgggctttctccactcaccccgaagtaaggacgggacggataactgttcaagataaacagacggagtaaagcggtcggcggatttgccgaccgctcctctctttcgtgagcatcgggcggacaaagaaaggagcaaagaaaccccaatgaaaaacacttcgttacttttgacagtgagttgagacagctcaaaagtaacaaaaagccaaaattagagatataaaa Subject: NC_002950_PG0831_PG0832|hypothetical protein:hypothetical protein|POSITIVE:NEGATIVE|[887972,888769]|798 HSP 1 e-value: 2.0E-12 bit: 75.8 Len: 70 Query Start:311 Query End:380 Subject Strand: NEGATIVE Subject Start: 231 Subject End: 303 ......................................................................................................................................................................................................................................................................................................................ggatatgcgagaagcaggtaaaaa-gaaaatg--gaaactcaactccctctcctctggaatccgcataaaatc................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ ......................................................................................................................................................................................................................................................................................................................ggatatgcaagaagcagggaaaaaagaaaaggttgaaactcaactccctcacctctggaatccgcataaaatc................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ HSP 2 e-value: 9.0E-12 bit: 73.8 Len: 93 Query Start:655 Query End:747 Subject Strand: NEGATIVE Subject Start: 121 Subject End: 213 ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ccgaagtaaggacgggacggataactgttcaagataaacagacggagtaaagcggtcggcggatttgccgaccgctcctctctttcgtgagca................................................................................................................. ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ccgaagtaaggacggaacaagtaaccgttcaagaagaacagacagagtaaagcggtcggcagatttgtccaccgctactttctttcatgagca................................................................................................................. Subject: NC_002950_PG0453_PG0456|hypothetical protein:PHP N-terminal domain protein|POSITIVE:POSITIVE|[496731,497854]|1124 HSP 1 e-value: 4.0E-11 bit: 71.9 Len: 64 Query Start:114 Query End:177 Subject Strand: NEGATIVE Subject Start: 685 Subject End: 748 .................................................................................................................tcgttttcttcggcaaaggtagtttcgttgtactgcgggcaacaaggtcaagcgacaagccgtt........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .................................................................................................................tcgttttcttcggcaaaggcagtttcggagtactgccggcaacgaggtcaaacggcaagccgtt........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 8.0E-6 bit: 54.0 Len: 47 Query Start:253 Query End:299 Subject Strand: NEGATIVE Subject Start: 567 Subject End: 613 ............................................................................................................................................................................................................................................................ttttattgcctcgaaacgaaaacgaccgacccgacggaaagacgcat................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ............................................................................................................................................................................................................................................................ttttattgtcttgaaacgaaaacgaccggcccgatggaaatacgcat................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Inter-species Hit: Count: 3 Min: 1 Max: 860 Len: 860 Subject: pint_PI0401_PI0402|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[367168,368031]|864 HSP 1 e-value: 0.0 bit: 1584.0 Len: 860 Query Start:1 Query End:860 Subject Strand: NEGATIVE Subject Start: 4 Subject End: 861 tataggtgtgtaagtagaactgtttcagactacaataaaagtagtttaacacaattctgtttacattctattcctcacattctattatatgttttcgcatcgaatcattcgtatcgttttcttcggcaaaggtagtttcgttgtactgcgggcaacaaggtcaagcgacaagccgttagggcaacaatctccacacttcattcttcaggtagtattcttgccctaaaccttgttgtcctagccacctaacctttttattgcctcgaaacgaaaacgaccgacccgacggaaagacgcatnnnnnnnggtcggatatgcgagaagcaggtaaaaagaaaatggaaactcaactccctctcctctggaatccgcataaaatcnnnnnnnnntcagacaagatgaaacagagatacaaaatatcaatttgggtggcacttgcactctcaggctctctcctttggggcggaagcgtctggctttagctggcagggatatgtgtggaaaatttcctcattcggctgctccttaccatcgctttggctatcgcagtgtacattctgacttatgccctcgttatggttgcactttatgcccctatttcatgtataaagaatgaacccaattggaacgtaaattgggctttctccactcaccccgaagtaaggacgggacggataactgttcaagataaacagacggagtaaagcggtcggcggatttgccgaccgctcctctctttcgtgagcatcgggcggacaaagaaaggagcaaagaaaccccaatgaaaaacacttcgttacttttgacagtgagttgagacagctcaaaagtaacaaaaagccaaaattagagatataaaa tataggtgtgtaagtagaactgtttcagactacaataaaagtagtttaacacaattctgtttacattctattcctcacattctattatatgttttcgcatcgaatcattcgtatcgttttcttcggcaaaggtagtttcgttgtactgcgggcaacaaggtcaagcgacaagccgttagggcaacaatctccacacttcattcttcaggtagtattcttgccctaaaccttgttgtcctagccacctaacctttttattgcctcgaaacgaaaacgaccgacccgacggaaagacgcataaaaaaaggtcggatatgcgagaagcaggtaaaaagaaaatggaaactcaactccctctcctctggaatccgcataaaatcaaaaaaaa-tcagacaagatgaaacagagatacaaaatatcaatttgggtggcacttgcactctcaggctctctcctttggggcggaagcgtctggctttagctggcagggatatgtgtggaaaatttcctcattcggctgctccttaccatcgctttggctatcgcagtgtacattctgacttatgccctcgttatggttgcactttat-cccctatttcatgtataaagaatgaacccaattggaacgtaaattgggctttctccactcaccccgaagtaaggacgggacggataactgttcaagataaacagacggagtaaagcggtcggcggatttgccgaccgctcctctctttcgtgagcatcgggcggacaaagaaaggagcaaagaaaccccaatgaaaaacacttcgttacttttgacagtgagttgagacagctcaaaagtaacaaaaagccaaaattagagatataaaa Subject: pint_PI0271_PI0272|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[262452,262760]|309 HSP 1 e-value: 8.0E-37 bit: 157.0 Len: 143 Query Start:702 Query End:844 Subject Strand: NEGATIVE Subject Start: 168 Subject End: 309 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................taaagcggtcggcggatttgccgaccgctcctctctttcgtgagcatcgggcggacaaagaaaggagcaaagaaaccccaatgaaaaacacttcgttacttttgacagtgagttgagacagctcaaaagtaacaaaaagccaa................ .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................taaagcggtcggcaaatctgccgaccgctactttctttcgtgagcttcgagcggacaaagaaagtagcaaagaaacccgaa-gaaaagtacctcgttacttttgacagtgagttgggacggctcaaaagtaacaaaaagccaa................ Subject: pint_PI0282_PI0283|hypothetical protein:Zn-dependent peptidase|POSITIVE:POSITIVE|[266887,267693]|807 HSP 1 e-value: 2.0E-25 bit: 119.0 Len: 116 Query Start:265 Query End:380 Subject Strand: NEGATIVE Subject Start: 15 Subject End: 131 ........................................................................................................................................................................................................................................................................gaaacgaaaacgaccgacccgacggaaagacgcatnnnnnnng-gtcggatatgcgagaagcaggtaaaaagaaaatggaaactcaactccctctcctctggaatccgcataaaatc................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ ........................................................................................................................................................................................................................................................................gaaacgaaaacgaccggcccgacggaaagacgcataaaaaaaatgtcggatatgcgagaagcagggaaaaagaaaatggaaactcaactccctcacctctaaaatctgcataaaatc................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAUAGGUGUGUAAGUAGAACUGUUUCAGACUACAAUAAAAGUAGUUUAACACAAUUCUGUUUACAUUCUAUUCCUCACAUUCUAUUAUAUGUUUUCGCAUCGAAUCAUUCGUAUCGUUUUCUUCGGCAAAGGUAGUUUCGUUGUACUGCGGGCAACAAGGUCAAGCGACAAGCCGUUAGGGCAACAAUCUCCACACUUCAUUCUUCAGGUAGUAUUCUUGCCCUAAACCUUGUUGUCCUAGCCACCUAACCUUUUUAUUGCCUCGAAACGAAAACGACCGACCCGACGGAAAGACGCAUAAAAAAAGGUCGGAUAUGCGAGAAGCAGGUAAAAAGAAAAUGGAAACUCAACUCCCUCUCCUCUGGAAUCCGCAUAAAAUCAAAAAAAAAUCAGACAAGAUGAAACAGAGAUACAAAAUAUCAAUUUGGGUGGCACUUGCACUCUCAGGCUCUCUCCUUUGGGGCGGAAGCGUCUGGCUUUAGCUGGCAGGGAUAUGUGUGGAAAAUUUCCUCAUUCGGCUGCUCCUUACCAUCGCUUUGGCUAUCGCAGUGUACAUUCUGACUUAUGCCCUCGUUAUGGUUGCACUUUAUGCCCCUAUUUCAUGUAUAAAGAAUGAACCCAAUUGGAACGUAAAUUGGGCUUUCUCCACUCACCCCGAAGUAAGGACGGGACGGAUAACUGUUCAAGAUAAACAGACGGAGUAAAGCGGUCGGCGGAUUUGCCGACCGCUCCUCUCUUUCGUGAGCAUCGGGCGGACAAAGAAAGGAGCAAAGAAACCCCAAUGAAAAACACUUCGUUACUUUUGACAGUGAGUUGAGACAGCUCAAAAGUAACAAAAAGCCAAAAUUAGAGAUAUAAAA .(((((.((((((((((((.(((.(.(((((((.......))))))).).))).)))))))))))))))))..(((..........(((((..((((...)))).....)))))..........(((..((((..((((((((...(((((((((((((((...((.....))..(((((((((.(((((((...............)).)).))).)))))))))))))))))))))..(((((((((.(((((((((((((((...((....)).((((((...((......))..........)))))).....))))..))).)))))))).....(((........))).....(((((.......(((....((............))....)))...)))))...............)))))))))....))).(((...((((........((((((...(((..(((((..((((((.(((((...(((.(((.....))).)))........))))).)))..)))..))))).))).(((((.((..((((..........))))..)))))))....))))))...(((((.........)))))(((((((........)))))))((((((....((..(((((.((..((((((.........))))))..........((.((((...(((((((((((....)))))))))))...)))).))....)).)))))..))...))))))))))..))).....))))))))...)))).((((((((......(((((((...))))))))))))))).....))).......)))........ (-241.58) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UUUUAUAUCUCUAAUUUUGGCUUUUUGUUACUUUUGAGCUGUCUCAACUCACUGUCAAAAGUAACGAAGUGUUUUUCAUUGGGGUUUCUUUGCUCCUUUCUUUGUCCGCCCGAUGCUCACGAAAGAGAGGAGCGGUCGGCAAAUCCGCCGACCGCUUUACUCCGUCUGUUUAUCUUGAACAGUUAUCCGUCCCGUCCUUACUUCGGGGUGAGUGGAGAAAGCCCAAUUUACGUUCCAAUUGGGUUCAUUCUUUAUACAUGAAAUAGGGGCAUAAAGUGCAACCAUAACGAGGGCAUAAGUCAGAAUGUACACUGCGAUAGCCAAAGCGAUGGUAAGGAGCAGCCGAAUGAGGAAAUUUUCCACACAUAUCCCUGCCAGCUAAAGCCAGACGCUUCCGCCCCAAAGGAGAGAGCCUGAGAGUGCAAGUGCCACCCAAAUUGAUAUUUUGUAUCUCUGUUUCAUCUUGUCUGAUUUUUUUUUGAUUUUAUGCGGAUUCCAGAGGAGAGGGAGUUGAGUUUCCAUUUUCUUUUUACCUGCUUCUCGCAUAUCCGACCUUUUUUUAUGCGUCUUUCCGUCGGGUCGGUCGUUUUCGUUUCGAGGCAAUAAAAAGGUUAGGUGGCUAGGACAACAAGGUUUAGGGCAAGAAUACUACCUGAAGAAUGAAGUGUGGAGAUUGUUGCCCUAACGGCUUGUCGCUUGACCUUGUUGCCCGCAGUACAACGAAACUACCUUUGCCGAAGAAAACGAUACGAAUGAUUCGAUGCGAAAACAUAUAAUAGAAUGUGAGGAAUAGAAUGUAAACAGAAUUGUGUUAAACUACUUUUAUUGUAGUCUGAAACAGUUCUACUUACACACCUAUA ....(((((........((((..(((((.((((((..(((.((((.....(((......)))...(((((((((......(((((....(((((((((.((((((..((((...((((((....(((..(((((((((((......)))))))))))..)))...((((((.....))))))........((((.........))))))))))(((((((((((((((........)))))))))..)))))).............))))))))))....(((((..(...(((....(.(((........))))....)))...)..)))))))))))))).....((.(((.....))).))...))))).....((....)).)))))))))..........)))).)))..))))))))))).))))........)))))........((((((((.((...((((...................(((((....((((((((((((..(((........)))..))).))).))))))....)))))........(((((.((.((((((((((((((.((((..(((((((..(((((......((((..((.(((.((.((((((((((((((((((.(((.((((((.........)).))))..))).))))))))..(((.....))).)))))))))).))..)))...))..))))....)))))...).)))))).)))).)))))))))).)))))).)))))))))....)))))))))).(((((..((((((((.(((.(((((.......))))).))).))))))))..)))))........ (-268.99) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 453 756 711 53 10 NC_002950:PG0595|5end_30S_ribosomal_protein_S6_653008..653238_POSITIVE 440 749 704 123 77 NC_002950:PG1273|5end_hypothetical_protein_1351837..1352067_NEGATIVE 433 750 705 217 171 NC_002950:PG0268|5end_tRNA_(5-methylaminomethyl-2-thiouridylate)-methyltransferase_300898..301128_POSITIVE 428 477 431 224 176 NC_002950:PG2110|5end_thiamine_biosynthesis_protein_ThiC_2221212..2221442_NEGATIVE 428 750 707 231 188 NC_002950:PG0448|5end_hypothetical_protein_488089..488319_POSITIVE 423 330 282 162 117 NC_002950:PG1481|5end_conjugative_transposon_protein_TraG_1558447..1558677_NEGATIVE 420 756 711 197 152 NC_002950:PG2164|5end_peptidyl-prolyl_cis-trans_isomerase,_FKBP-type_2270125..2270355_NEGATIVE 416 468 429 143 99 NC_002950:PG0068|5end_hypothetical_protein_81748..81978_POSITIVE 414 758 711 144 76 NC_002950:PG1638|5end_thioredoxin_family_protein_1719650..1719880_NEGATIVE 414 750 706 53 6 NC_002950:PG0143|5end_hydrolase,_carbon-nitrogen_family_166625..166855_NEGATIVE 411 498 459 219 168 NC_002950:PG2109|5end_thiamine-phosphate_pyrophosphorylase_2219452..2219682_NEGATIVE 408 757 713 55 2 NC_002950:PG2043|5end_conserved_hypothetical_protein_TIGR00486_2142218..2142448_POSITIVE 406 745 703 182 126 NC_002950:PG0327|5end_hypothetical_protein_362061..362291_NEGATIVE 404 770 726 75 14 NC_002950:PG1283|5end_hypothetical_protein_1360553..1360783_POSITIVE 398 740 696 61 18 NC_002950:PG0734|5end_nitroreductase_family_protein_783773..784003_POSITIVE 398 750 708 153 104 NC_002950:PG0216|5end_hypothetical_protein_251956..252186_POSITIVE 395 492 454 58 18 NC_002950:PG1592|5end_HDIG_domain_protein_1669383..1669613_POSITIVE 395 754 711 202 161 NC_002950:PG0356|5end_hypothetical_protein_390611..390841_POSITIVE 393 756 711 198 150 NC_002950:PG1586|5end_batE_protein_1664054..1664284_POSITIVE 393 756 711 187 131 NC_002950:PG0329|5end_formiminotransferase-cyclodeaminase-related_protein_364429..364659_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 511 746 706 73 29 NC_002950:PG1133|3end_hypothetical_protein_1214103..1214253_POSITIVE 431 487 447 113 62 NC_002950:PG0626|3end_hypothetical_protein_680346..680496_POSITIVE 429 488 447 142 86 NC_002950:PG1942|3end_30S_ribosomal_protein_S12_2027946..2028096_NEGATIVE 426 469 426 148 101 NC_002950:PG2111|3end_thiS_protein_2221282..2221432_NEGATIVE 406 745 703 88 32 NC_002950:PG0328|3end_imidazolonepropionase_362155..362305_NEGATIVE 405 485 446 87 50 NC_002950:PG2102|3end_immunoreactive_61_kDa_antigen_PG91_2211424..2211574_NEGATIVE 403 501 461 144 98 NC_002950:PG0897|3end_alpha-amylase_family_protein_960868..961018_NEGATIVE 398 740 696 64 21 NC_002950:PG0733|3end_riboflavin_synthase_subunit_alpha_783856..784006_POSITIVE 398 750 708 145 96 NC_002950:PG0215|3end_hypothetical_protein_252028..252178_POSITIVE 394 756 713 47 7 NC_002950:PG1675|3end_hypothetical_protein_1760360..1760510_POSITIVE 393 756 711 138 82 NC_002950:PG0330|3end_DNA-binding_protein,_histone-like_family_364478..364628_NEGATIVE 387 755 711 126 85 NC_002950:PG0333|3end_hypothetical_protein_368811..368961_POSITIVE 387 740 693 147 92 NC_002950:PG0028|3end_2C-methyl-D-erythritol_2,4-cyclodiphosphate_synthase_34431..34581_POSITIVE 385 750 706 67 17 NC_002950:PG0790|3end_GTP-binding_protein_Obg_841399..841549_NEGATIVE 385 755 712 76 16 NC_002950:PG0332|3end_transcription_termination_factor_Rho_367675..367825_POSITIVE 384 758 711 128 72 NC_002950:PG0424|3end_hypothetical_protein_463213..463363_POSITIVE 381 487 446 85 33 NC_002950:PG2082|3end_POT_family_protein_2181843..2181993_NEGATIVE 376 500 453 66 8 NC_002950:PG0703|3end_cobalamin_(5'-phosphate)_synthase,_putative_759006..759156_POSITIVE 375 757 713 53 7 NC_002950:PG0959|3end_ATP-binding_protein,_Mrp/Nbp35_family_1020023..1020173_NEGATIVE 375 755 711 138 85 NC_002950:PG0555|3end_DNA-binding_protein,_histone-like_family_611716..611866_NEGATIVE