Origin IGS:
tcggattcattcatactcacaggtgagcaaaggtaaaaaagaagttgtaatacacgatgaggttgtacaggctgccccggggccgacgcattaaattggtttgcggcttcattcgagcgagtttcttctgaatacgagggattgaggacttcatattggcctttaagagggaaaagatatgttgccggcggtaacgtcgttggacgtctcaaaggggcactcattaaaggggagtaaatttccaccggtggaaaaccggtgtgtaccaaatagtcgcctgacacagaaataaaaagaatgaacaaaagtgcctgcttattgtgcaaaggtcccgaataatagaagaaagaggctaaggatacagtataaagatacagtataaattttcaaatgaaataaccctggggttacatcagatttgagtagggagatattgatatgg
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9
ccatatcaatatctccctactcaaatctgatgtaaccccagggttatttcatttgaaaatttatactgtatctttatactgtatccttagcctctttcttctattattcgggacctttgcacaataagcaggcacttttgttcattctttttatttctgtgtcaggcgactatttggtacacaccggttttccaccggtggaaatttactcccctttaatgagtgcccctttgagacgtccaacgacgttaccgccggcaacatatcttttccctcttaaaggccaatatgaagtcctcaatccctcgtattcagaagaaactcgctcgaatgaagccgcaaaccaatttaatgcgtcggccccggggcagcctgtacaacctcatcgtgtattacaacttcttttttacctttgctcacctgtgagtatgaatgaatccga

Mask Tandem Repeat Region ================================================
tcggattcattcatactcacaggtgagcaaaggtaaaaaagaagttgtaatacacgatgaggttgtacaggctgccccggggccgacgcattaaattggtttgcggcttcattcgagcgagtttcttctgaatacgagggattgaggacttcatattggcctttaagagggaaaagatatgttgccggcggtaacgtcgttggacgtctcaaaggggcactcattaaaggggagtaaatttccaccggtggaaaaccggtgtgtaccaaatagtcgcctgacacagaaataaaaagaatgaacaaaagtgcctgcttattgtgcaaaggtcccgaataatagaagaaagaggctaagnnnnnnnnnnnnnnnnnnnnnnnnnnttttcaaatgaaataaccctggggttacatcagatttgagtagggagatattgatatgg

Find is-nt database================================================
Query_seq: PG1405:PG1407|PG1405:PG1407:hypothetical protein:nitroimidazole resistance protein, putative:<-<-:1490760..1491201 442
tcggattcattcatactcacaggtgagcaaaggtaaaaaagaagttgtaatacacgatgaggttgtacaggctgccccggggccgacgcattaaattggtttgcggcttcattcgagcgagtttcttctgaatacgagggattgaggacttcatattggcctttaagagggaaaagatatgttgccggcggtaacgtcgttggacgtctcaaaggggcactcattaaaggggagtaaatttccaccggtggaaaaccggtgtgtaccaaatagtcgcctgacacagaaataaaaagaatgaacaaaagtgcctgcttattgtgcaaaggtcccgaataatagaagaaagaggctaaggatacagtataaagatacagtataaattttcaaatgaaataaccctggggttacatcagatttgagtagggagatattgatatgg
Intra-Species Hit: Count: 0
Inter-species Hit: Count: 0

Find is-aa database================================================
Query_seq: PG1405:PG1407|PG1405:PG1407:hypothetical protein:nitroimidazole resistance protein, putative:<-<-:1490760..1491201 442
tcggattcattcatactcacaggtgagcaaaggtaaaaaagaagttgtaatacacgatgaggttgtacaggctgccccggggccgacgcattaaattggtttgcggcttcattcgagcgagtttcttctgaatacgagggattgaggacttcatattggcctttaagagggaaaagatatgttgccggcggtaacgtcgttggacgtctcaaaggggcactcattaaaggggagtaaatttccaccggtggaaaaccggtgtgtaccaaatagtcgcctgacacagaaataaaaagaatgaacaaaagtgcctgcttattgtgcaaaggtcccgaataatagaagaaagaggctaaggatacagtataaagatacagtataaattttcaaatgaaataaccctggggttacatcagatttgagtagggagatattgatatgg
Intra-Species Hit: Count: 0
Inter-species Hit: Count: 0

Find nr database================================================
Query_seq: PG1405:PG1407|PG1405:PG1407:hypothetical protein:nitroimidazole resistance protein, putative:<-<-:1490760..1491201 442
tcggattcattcatactcacaggtgagcaaaggtaaaaaagaagttgtaatacacgatgaggttgtacaggctgccccggggccgacgcattaaattggtttgcggcttcattcgagcgagtttcttctgaatacgagggattgaggacttcatattggcctttaagagggaaaagatatgttgccggcggtaacgtcgttggacgtctcaaaggggcactcattaaaggggagtaaatttccaccggtggaaaaccggtgtgtaccaaatagtcgcctgacacagaaataaaaagaatgaacaaaagtgcctgcttattgtgcaaaggtcccgaataatagaagaaagaggctaaggatacagtataaagatacagtataaattttcaaatgaaataaccctggggttacatcagatttgagtagggagatattgatatgg
Intra-Species Hit: Count: 0

Inter-species Hit: Count: 4	Min: 167	Max: 338	Len: 172
Subject: UniRef90_Q7MV49 Cluster: Hypothetical protein; n=1; Porphyromonas gingivalis|Rep: Hypothetical protein - Porphyromonas gingivalis (Bacteroides gingivalis)
HSP  1	e-value: 9.0E-12	bit: 59.3	Len: 126	Query Start:170	Query End:295	Subject Strand: null	Subject Start: 63	Subject End: 104
......................................................................................................................................................................... G  K  D  M  L  P  A  V  T  S  L  D  V  S  K  G  H  S  L  K  G  S  K  F  P  P  V  E  N  R  C  V  P  N  S  R  L  T  Q  K  *  K ...................................................................................................................................................
......................................................................................................................................................................... G  A  Q  V  L  L  P  V  M  S  L  D  V  S  K  G  H  S  L  K  G  S  K  F  P  P  V  E  I  R  R  V  P  N  S  R  L  T  H  N  K  K ...................................................................................................................................................
HSP  2	e-value: 9.0E-12	bit: 32.3	Len: 42	Query Start:288	Query End:329	Subject Strand: null	Subject Start: 102	Subject End: 115
............................................................................................................................................................................................................................................................................................... N  K  K  N  E  Q  K  C  L  L  I  V  Q  R .................................................................................................................
............................................................................................................................................................................................................................................................................................... N  K  K  N  E  Q  K  C  L  L  I  V  Q  R .................................................................................................................

Subject: UniRef90_Q7MSZ0 Cluster: Hypothetical protein; n=2; Porphyromonas gingivalis|Rep: Hypothetical protein - Porphyromonas gingivalis (Bacteroides gingivalis)
HSP  1	e-value: 2.0E-9	bit: 52.0	Len: 129	Query Start:167	Query End:295	Subject Strand: null	Subject Start: 63	Subject End: 104
...................................................................................................................................................................... E  G  K  D  M  L  P  A  V  T  S  L  D  V  S  K  G  H  S  L  K  G  S  K  F  P  P  V  E  N  R  C  V  P  N  S  R  L  T  Q  K  *  K ...................................................................................................................................................
...................................................................................................................................................................... E  A  Q  V  L  L  P  -  V  M  S  F  D  V  S  K  G  H  S  L  K  G  S  R  F  P  L  V  E  I  R  R  V  P  N  S  R  L  T  H  N  K  K ...................................................................................................................................................
HSP  2	e-value: 2.0E-9	bit: 32.0	Len: 45	Query Start:288	Query End:332	Subject Strand: null	Subject Start: 102	Subject End: 116
............................................................................................................................................................................................................................................................................................... N  K  K  N  E  Q  K  C  L  L  I  V  Q  R  S ..............................................................................................................
............................................................................................................................................................................................................................................................................................... N  K  K  N  K  Q  K  C  L  L  V  V  Q  R  S ..............................................................................................................

Subject: UniRef90_Q7MTZ0 Cluster: Hypothetical protein; n=1; Porphyromonas gingivalis|Rep: Hypothetical protein - Porphyromonas gingivalis (Bacteroides gingivalis)
HSP  1	e-value: 1.0E-7	bit: 45.1	Len: 126	Query Start:170	Query End:295	Subject Strand: null	Subject Start: 57	Subject End: 120
......................................................................................................................................................................... G  K  D  M  L  P  A  V  T  S  L  D  V  S  K  G  H  S  L  K  G  S  K  F  P  P  -  -  -  -  -  -  -  -  -  -  -  -  -  -  -  -  -  -  -  -  -  -  V  E  N  R  C  V  P  N  S  R  L  T  Q  K  *  K ...................................................................................................................................................
......................................................................................................................................................................... G  A  Q  V  L  L  P  V  M  S  F  D  V  S  K  G  H  S  L  K  G  S  K  F  P  P  L  E  K  E  V  S  T  S  G  K  F  I  F  Q  W  W  K  D  N  F  P  L  V  E  I  R  H  V  P  N  S  R  L  T  H  N  K  K ...................................................................................................................................................
HSP  2	e-value: 1.0E-7	bit: 32.3	Len: 51	Query Start:288	Query End:338	Subject Strand: null	Subject Start: 118	Subject End: 134
............................................................................................................................................................................................................................................................................................... N  K  K  N  E  Q  K  C  L  L  I  V  Q  R  S  R  I ........................................................................................................
............................................................................................................................................................................................................................................................................................... N  K  K  N  E  Q  K  C  L  L  I  V  Q  S  S  H  L ........................................................................................................

Subject: UniRef90_Q7MVZ0 Cluster: Hypothetical protein; n=1; Porphyromonas gingivalis|Rep: Hypothetical protein - Porphyromonas gingivalis (Bacteroides gingivalis)
HSP  1	e-value: 5.0E-6	bit: 44.3	Len: 126	Query Start:170	Query End:295	Subject Strand: null	Subject Start: 125	Subject End: 188
......................................................................................................................................................................... G  K  D  M  L  P  A  V  T  S  L  D  V  S  K  G  H  S  L  K  G  S  K  -  -  -  -  -  -  -  -  -  -  -  -  -  -  -  -  -  -  -  -  -  -  F  P  P  V  E  N  R  C  V  P  N  S  R  L  T  Q  K  *  K ...................................................................................................................................................
......................................................................................................................................................................... G  A  Q  V  L  L  P  V  M  S  L  N  V  S  K  G  H  S  L  K  G  S  K  F  P  L  V  E  K  E  V  S  T  G  G  K  F  I  F  H  G  R  K  D  I  F  P  L  V  E  N  R  R  V  P  N  S  R  L  T  H  N  K  K ...................................................................................................................................................
HSP  2	e-value: 5.0E-6	bit: 27.7	Len: 45	Query Start:288	Query End:332	Subject Strand: null	Subject Start: 186	Subject End: 200
............................................................................................................................................................................................................................................................................................... N  K  K  N  E  Q  K  C  L  L  I  V  Q  R  S ..............................................................................................................
............................................................................................................................................................................................................................................................................................... N  K  K  N  K  Q  K  R  L  L  I  V  Q  R  S ..............................................................................................................


tcggattcattcatactcacaggtgagcaaaggtaaaaaagaagttgtaatacacgatgaggttgtacaggctgccccggggccgacgcattaaattggtttgcggcttcattcgagcgagtttcttctgaatacgagggattgaggacttcatattggcctttaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatagaagaaagaggctaaggatacagtataaagatacagtataaattttcaaatgaaataaccctggggttacatcagatttgagtagggagatattgatatgg
Predict ORF larger than 30AA ================================================
Protein_Len: 31	Strand: +	Start: 142	End: 234
............................................................................................................................................. M  R  T  S  Y  W  P  L  R  G  K  R  Y  V  A  G  G  N  V  V  G  R  L  K  G  A  L  I  K  G  E ................................................................................................................................................................................................................
Protein_Len: 37	Strand: +	Start: 179	End: 289
.................................................................................................................................................................................. M  L  P  A  V  T  S  L  D  V  S  K  G  H  S  L  K  G  S  K  F  P  P  V  E  N  R  C  V  P  N  S  R  L  T  Q  K .........................................................................................................................................................
Protein_Len: 40	Strand: -	Start: 319	End: 438
.............................................................................................................................................................................................................................................................................................................................. Q  A  F  T  G  F  L  L  L  F  L  S  L  I  C  Y  L  S  V  T  Y  I  K  L  H  F  L  G  P  T  V  D  S  K  L  L  S  I  N  M ....
Protein_Len: 38	Strand: -	Start: 227	End: 340
.................................................................................................................................................................................................................................. L  P  T  F  K  W  R  H  F  V  P  T  Y  W  I  T  A  Q  C  L  F  L  F  F  S  C  F  H  R  S  I  T  C  L  D  R  I  M ......................................................................................................
Protein_Len: 53	Strand: -	Start: 20	End: 178
................... L  H  A  F  T  F  F  F  N  Y  Y  V  I  L  N  Y  L  S  G  R  P  R  R  M  L  N  T  Q  P  K  M  R  A  L  K  K  Q  I  R  P  I  S  S  K  M  N  A  K  L  L  S  F  M ........................................................................................................................................................................................................................................................................
Protein_Len: 60	Strand: -	Start: 3	End: 380
.. P  R  R  L  P  A  S  M  L  P  S  Y  I  E  V  P  P  F  G  T  H  V  L  Y  D  G  S  V  S  I  F  L  I  F  L  L  A  Q  K  N  H  L  P  G  S  Y  Y  F  F  S  A  L  S  V  T  Y  L  Y  L  M ..............................................................

tcggattcattcatactcacaggtgagcaaaggtaaaaaagaagttgtaatacacgatgaggttgtacaggctgccccggggccgacgcattaaattggtttgcggcttcattcgagcgagtttcttctgaatacgagggattgaggacttcatattggcctttaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatagaagaaagaggctaaggatacagtataaagatacagtataaattttcaaatgaaataaccctggggttacatcagatttgagtagggagatattgatatgg
Predict Promoter with matrix: RpoD-15 score > 80================================================

Predict Promoter with matrix: RpoD-16 score > 80================================================

Predict Promoter with matrix: RpoD-17 score > 80================================================

Predict Promoter with matrix: RpoD-18 score > 80================================================

Predict Promoter with matrix: RpoD-19 score > 80================================================

Predict Promoter with matrix: RpoN score > 80================================================

tcggattcattcatactcacaggtgagcaaaggtaaaaaagaagttgtaatacacgatgaggttgtacaggctgccccggggccgacgcattaaattggtttgcggcttcattcgagcgagtttcttctgaatacgagggattgaggacttcatattggcctttaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatagaagaaagaggctaaggatacagtataaagatacagtataaattttcaaatgaaataaccctggggttacatcagatttgagtagggagatattgatatgg
Predict TransTerm conf > 70================================================

Find igs database================================================
Query_seq: PG1405:PG1407|PG1405:PG1407:hypothetical protein:nitroimidazole resistance protein, putative:<-<-:1490760..1491201 442
tcggattcattcatactcacaggtgagcaaaggtaaaaaagaagttgtaatacacgatgaggttgtacaggctgccccggggccgacgcattaaattggtttgcggcttcattcgagcgagtttcttctgaatacgagggattgaggacttcatattggcctttaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatagaagaaagaggctaaggatacagtataaagatacagtataaattttcaaatgaaataaccctggggttacatcagatttgagtagggagatattgatatgg
Intra-Species Hit: Count: 2	Min: 1	Max: 442	Len: 442
Subject: NC_002950_PG1405_PG1407|hypothetical protein:nitroimidazole resistance protein, putative|NEGATIVE:NEGATIVE|[1490760,1491201]|442
HSP  1	e-value: 5.0E-89	bit: 329.0	Len: 166	Query Start:1	Query End:166	Subject Strand: POSITIVE	Subject Start: 1	Subject End: 166
tcggattcattcatactcacaggtgagcaaaggtaaaaaagaagttgtaatacacgatgaggttgtacaggctgccccggggccgacgcattaaattggtttgcggcttcattcgagcgagtttcttctgaatacgagggattgaggacttcatattggcctttaa....................................................................................................................................................................................................................................................................................
tcggattcattcatactcacaggtgagcaaaggtaaaaaagaagttgtaatacacgatgaggttgtacaggctgccccggggccgacgcattaaattggtttgcggcttcattcgagcgagtttcttctgaatacgagggattgaggacttcatattggcctttaa....................................................................................................................................................................................................................................................................................
HSP  2	e-value: 5.0E-52	bit: 206.0	Len: 104	Query Start:339	Query End:442	Subject Strand: POSITIVE	Subject Start: 339	Subject End: 442
..................................................................................................................................................................................................................................................................................................................................................atagaagaaagaggctaaggatacagtataaagatacagtataaattttcaaatgaaataaccctggggttacatcagatttgagtagggagatattgatatgg
..................................................................................................................................................................................................................................................................................................................................................atagaagaaagaggctaaggatacagtataaagatacagtataaattttcaaatgaaataaccctggggttacatcagatttgagtagggagatattgatatgg

Subject: NC_002950_PG1411_PG1414|potassium uptake protein TrkA, putative:hypothetical protein|NEGATIVE:POSITIVE|[1495257,1497148]|1892
HSP  1	e-value: 1.0E-37	bit: 159.0	Len: 100	Query Start:67	Query End:166	Subject Strand: NEGATIVE	Subject Start: 958	Subject End: 1060
..................................................................acaggctgccccggggccgacgcattaaattggttt-gcggcttcattcgagcgagtttcttct--gaatacgagggattgaggacttcatattggcctttaa....................................................................................................................................................................................................................................................................................
..................................................................acaggctgccccggggccgacgcattaaatcggttttgcggcttcattcgagcgagtttcttctctgaatacgagggattgaggacttcatattggcctttaa....................................................................................................................................................................................................................................................................................

Inter-species Hit: Count: 0

Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================
UCGGAUUCAUUCAUACUCACAGGUGAGCAAAGGUAAAAAAGAAGUUGUAAUACACGAUGAGGUUGUACAGGCUGCCCCGGGGCCGACGCAUUAAAUUGGUUUGCGGCUUCAUUCGAGCGAGUUUCUUCUGAAUACGAGGGAUUGAGGACUUCAUAUUGGCCUUUAAGAGGGAAAAGAUAUGUUGCCGGCGGUAACGUCGUUGGACGUCUCAAAGGGGCACUCAUUAAAGGGGAGUAAAUUUCCACCGGUGGAAAACCGGUGUGUACCAAAUAGUCGCCUGACACAGAAAUAAAAAGAAUGAACAAAAGUGCCUGCUUAUUGUGCAAAGGUCCCGAAUAAUAGAAGAAAGAGGCUAAGGAUACAGUAUAAAGAUACAGUAUAAAUUUUCAAAUGAAAUAACCCUGGGGUUACAUCAGAUUUGAGUAGGGAGAUAUUGAUAUGG
((((..((.(((.((((((..((((.((....(((........(((((.....))))).......)))..)).(((((((((....((((...........))))..((((((..(((...(((((((((.......((((((..((....((((((..((((....))))....))))))...)).((.(..(((((....)))))..).((((((((((((((..(((.((.((.....((((((((.....))))))).).......)).)).))).................)))))......)))))).))).....))...))))))......)))))))))...)))....((((.((((....)))).)))).........))))))....)))))))))..)))).....)))))).)))))..))))..... (-114.39)

Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================
CCAUAUCAAUAUCUCCCUACUCAAAUCUGAUGUAACCCCAGGGUUAUUUCAUUUGAAAAUUUAUACUGUAUCUUUAUACUGUAUCCUUAGCCUCUUUCUUCUAUUAUUCGGGACCUUUGCACAAUAAGCAGGCACUUUUGUUCAUUCUUUUUAUUUCUGUGUCAGGCGACUAUUUGGUACACACCGGUUUUCCACCGGUGGAAAUUUACUCCCCUUUAAUGAGUGCCCCUUUGAGACGUCCAACGACGUUACCGCCGGCAACAUAUCUUUUCCCUCUUAAAGGCCAAUAUGAAGUCCUCAAUCCCUCGUAUUCAGAAGAAACUCGCUCGAAUGAAGCCGCAAACCAAUUUAAUGCGUCGGCCCCGGGGCAGCCUGUACAACCUCAUCGUGUAUUACAACUUCUUUUUUACCUUUGCUCACCUGUGAGUAUGAAUGAAUCCGA
.............((((...(((((..(((.((((((....)))))).))))))))......((((.((((....)))).)))).........................))))..(((((.......))))).......((((((((..........((((.(((((..............(((((((.....))))))).......((((.........))))(((((.....((((((....))))))...((((((......((((((.(((.....)))..(((((((.............))))))).)))))).....(((.......)))..................))))))...))))).)))))))))..................................((((((....)))))).)))))))).... (-98.42)

Find mRNA Target Using  Conserved IGS================================================
5'END mRNA Target Prediction===================================
Score	srna_start	srna_end	target_start	tegart_end	seq_id
1103	120	71	211	162	NC_002950:PG1405|5end_hypothetical_protein_1490669..1490899_NEGATIVE
855	129	81	108	60	NC_002950:PG1250|5end_hypothetical_protein_1327846..1328076_NEGATIVE
640	150	101	225	176	NC_002950:PG0278|5end_hypothetical_protein_310047..310277_POSITIVE
496	118	72	231	165	NC_002950:PG2175|5end_hypothetical_protein_2283116..2283346_NEGATIVE
485	118	73	208	151	NC_002950:PG1745|5end_phosphoribulokinase_family_protein_1831024..1831254_NEGATIVE
449	330	281	55	10	NC_002950:PG0494|5end_hypothetical_protein_535366..535596_NEGATIVE
436	118	78	229	175	NC_002950:PG0864|5end_site-specific_recombinase,_resolvase_family_927669..927899_NEGATIVE
414	105	68	66	24	NC_002950:PG1770|5end_hypothetical_protein_1857284..1857514_POSITIVE
411	128	81	231	164	NC_002950:PG0035|5end_DNA_polymerase_III,_alpha_subunit_46284..46514_NEGATIVE
407	109	71	172	131	NC_002950:PG1966|5end_hypothetical_protein_2056924..2057154_NEGATIVE
399	120	74	82	22	NC_002950:PG1269|5end_delta-1-pyrroline-5-carboxylate_dehydrogenase_1349201..1349431_NEGATIVE
389	107	61	199	137	NC_002950:PG0606|5end_hypothetical_protein_662558..662788_NEGATIVE
383	140	96	208	162	NC_002950:PG0241|5end_lipoprotein,_putative_278214..278444_NEGATIVE
378	120	71	73	6	NC_002950:PG1664|5end_ABC_transporter,_permease_protein,_putative_1745813..1746043_POSITIVE
373	110	61	70	2	NC_002950:PG1561|5end_dTDP-4-dehydrorhamnose_reductase_1640995..1641225_NEGATIVE
373	99	54	133	91	NC_002950:PG0471|5end_hypothetical_protein_512288..512518_POSITIVE
373	119	71	66	13	NC_002950:PG0429|5end_pyruvate_synthase_466100..466330_POSITIVE
372	120	71	112	54	NC_002950:PG2028|5end_ebsC_protein_2126027..2126257_POSITIVE
368	120	73	166	120	NC_002950:PG0263|5end_tyrosyl-tRNA_synthetase_295663..295893_POSITIVE
364	89	41	167	101	NC_002950:PG0363|5end_hypothetical_protein_397470..397700_POSITIVE

3'END mRNA Target Prediction===================================
Score	srna_start	srna_end	target_start	tegart_end	seq_id
684	320	271	72	24	NC_002950:PG1364|3end_1-deoxy-D-xylulose_5-phosphate_reductoisomerase_1444388..1444538_NEGATIVE
496	118	72	132	66	NC_002950:PG2176|3end_ISPg2,_transposase_2283215..2283365_NEGATIVE
485	118	73	132	75	NC_002950:PG1746|3end_ISPg2,_transposase_1831100..1831250_NEGATIVE
454	127	81	141	81	NC_002950:PG1350|3end_ISPg2,_transposase_1432076..1432226_POSITIVE
454	127	81	141	81	NC_002950:PG0865|3end_ISPg2,_transposase_927766..927916_NEGATIVE
454	127	81	141	81	NC_002950:PG0277|3end_ISPg2,_transposase_310066..310216_POSITIVE
394	120	71	49	3	NC_002950:PG0754|3end_DNA_topoisomerase_I_803389..803539_POSITIVE
390	118	71	104	56	NC_002950:PG1975|3end_hemagglutinin_protein_HagC_2064350..2064500_POSITIVE
374	119	74	85	35	NC_002950:PG0052|3end_sensor_histidine_kinase_64686..64836_POSITIVE
373	110	61	73	5	NC_002950:PG1562|3end_dTDP-4-dehydrorhamnose_3,5-epimerase_1640992..1641142_NEGATIVE
372	120	71	103	45	NC_002950:PG2027|3end_hypothetical_protein_2126098..2126248_POSITIVE
357	120	71	147	104	NC_002950:PG1743|3end_2-dehydro-3-deoxyphosphooctonate_aldolase_1827530..1827680_NEGATIVE
357	110	66	134	92	NC_002950:PG0443|3end_hemagglutinin-related_protein_483147..483297_POSITIVE
356	120	76	118	73	NC_002950:PG2214|3end_hypothetical_protein_2325301..2325451_NEGATIVE
349	89	55	113	59	NC_002950:PG1759|3end_adhesion_protein,_putative_1846597..1846747_POSITIVE
348	118	71	70	19	NC_002950:PG2075|3end_hypothetical_protein_2176248..2176398_NEGATIVE
348	118	71	70	19	NC_002950:PG1671|3end_hypothetical_protein_1757440..1757590_NEGATIVE
348	118	71	70	19	NC_002950:PG1266|3end_hypothetical_protein_1346769..1346919_NEGATIVE
348	118	71	70	19	NC_002950:PG0101|3end_hypothetical_protein_119496..119646_POSITIVE
347	219	185	50	13	NC_002950:PG0127|3end_ferrochelatase_149667..149817_POSITIVE