Origin IGS: ttgttctgtcttacttccatgaaaacttccgaagagcctcctgaccggctcatcaggctccaaatatagacattataaacaggatctcccataagagtatagtatcctctcatatgagaccatagtatcctctcatgtgagaccatagtatcctctcatgtgagaccatagtatcctctcataggagaccatagtatcctctcataggagaccatagtatcctctcatatgagaccatagtattctctcatatgagaccatagtatcctctcgtgtgagaccatagtatcctctcataggagaccatagtatcctctcatgtgagaccatagtatattctcatcattatataatatctacatttgcaatactaagaactgaaacgcctgaa .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 ttcaggcgtttcagttcttagtattgcaaatgtagatattatataatgatgagaatatactatggtctcacatgagaggatactatggtctcctatgagaggatactatggtctcacacgagaggatactatggtctcatatgagagaatactatggtctcatatgagaggatactatggtctcctatgagaggatactatggtctcctatgagaggatactatggtctcacatgagaggatactatggtctcacatgagaggatactatggtctcatatgagaggatactatactcttatgggagatcctgtttataatgtctatatttggagcctgatgagccggtcaggaggctcttcggaagttttcatggaagtaagacagaacaa Mask Tandem Repeat Region ================================================ ttgttctgtcttacttccatgaaaacttccgaagagcctcctgaccggctcatcaggctccaaatatagacattataaacaggatctcccataagagtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattctcatcattatataatatctacatttgcaatactaagaactgaaacgcctgaa Find is-nt database================================================ Query_seq: PG1389:PG1391|PG1389:PG1391:DNA-binding protein, histone-like family:hypothetical protein:<-->:1471419..1471809 391 ttgttctgtcttacttccatgaaaacttccgaagagcctcctgaccggctcatcaggctccaaatatagacattataaacaggatctcccataagagtatagtatcctctcatatgagaccatagtatcctctcatgtgagaccatagtatcctctcatgtgagaccatagtatcctctcataggagaccatagtatcctctcataggagaccatagtatcctctcatatgagaccatagtattctctcatatgagaccatagtatcctctcgtgtgagaccatagtatcctctcataggagaccatagtatcctctcatgtgagaccatagtatattctcatcattatataatatctacatttgcaatactaagaactgaaacgcctgaa Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PG1389:PG1391|PG1389:PG1391:DNA-binding protein, histone-like family:hypothetical protein:<-->:1471419..1471809 391 ttgttctgtcttacttccatgaaaacttccgaagagcctcctgaccggctcatcaggctccaaatatagacattataaacaggatctcccataagagtatagtatcctctcatatgagaccatagtatcctctcatgtgagaccatagtatcctctcatgtgagaccatagtatcctctcataggagaccatagtatcctctcataggagaccatagtatcctctcatatgagaccatagtattctctcatatgagaccatagtatcctctcgtgtgagaccatagtatcctctcataggagaccatagtatcctctcatgtgagaccatagtatattctcatcattatataatatctacatttgcaatactaagaactgaaacgcctgaa Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PG1389:PG1391|PG1389:PG1391:DNA-binding protein, histone-like family:hypothetical protein:<-->:1471419..1471809 391 ttgttctgtcttacttccatgaaaacttccgaagagcctcctgaccggctcatcaggctccaaatatagacattataaacaggatctcccataagagtatagtatcctctcatatgagaccatagtatcctctcatgtgagaccatagtatcctctcatgtgagaccatagtatcctctcataggagaccatagtatcctctcataggagaccatagtatcctctcatatgagaccatagtattctctcatatgagaccatagtatcctctcgtgtgagaccatagtatcctctcataggagaccatagtatcctctcatgtgagaccatagtatattctcatcattatataatatctacatttgcaatactaagaactgaaacgcctgaa Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 ttgttctgtcttacttccatgaaaacttccgaagagcctcctgaccggctcatcaggctccaaatatagacattataaacaggatctcccataagagtatagtatcctctcatatgagaccatagtatcctctcatgtgagaccatagtatcctctcatgtgagaccatagtatcctctcataggagaccatagtatcctctcataggagaccatagtatcctctcatatgagaccatagtattctctcatatgagaccatagtatcctctcgtgtgagaccatagtatcctctcataggagaccatagtatcctctcatgtgagaccatagtatattctcatcattatataatatctacatttgcaatactaagaactgaaacgcctgaa Predict ORF larger than 30AA ================================================ Protein_Len: 32 Strand: + Start: 296 End: 391 ....................................................................................................................................................................................................................................................................................................... M G D H S I L S C E T I V Y S H H Y I I S T F A I L R T E T P E Protein_Len: 42 Strand: - Start: 205 End: 330 ............................................................................................................................................................................................................ L L G Y Y G R M H S W L I R E Y S V M T D E R T L G Y Y G R M P S W L I R E H S V M ............................................................. Protein_Len: 48 Strand: - Start: 3 End: 146 .. N Q R V E M F V E S S G G S R S M L S W I Y V N Y V P D G M L T Y Y G R M H S W L I R E H S V M ..................................................................................................................................................................................................................................................... ttgttctgtcttacttccatgaaaacttccgaagagcctcctgaccggctcatcaggctccaaatatagacattataaacaggatctcccataagagtatagtatcctctcatatgagaccatagtatcctctcatgtgagaccatagtatcctctcatgtgagaccatagtatcctctcataggagaccatagtatcctctcataggagaccatagtatcctctcatatgagaccatagtattctctcatatgagaccatagtatcctctcgtgtgagaccatagtatcctctcataggagaccatagtatcctctcatgtgagaccatagtatattctcatcattatataatatctacatttgcaatactaagaactgaaacgcctgaa Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ ttgttctgtcttacttccatgaaaacttccgaagagcctcctgaccggctcatcaggctccaaatatagacattataaacaggatctcccataagagtatagtatcctctcatatgagaccatagtatcctctcatgtgagaccatagtatcctctcatgtgagaccatagtatcctctcataggagaccatagtatcctctcataggagaccatagtatcctctcatatgagaccatagtattctctcatatgagaccatagtatcctctcgtgtgagaccatagtatcctctcataggagaccatagtatcctctcatgtgagaccatagtatattctcatcattatataatatctacatttgcaatactaagaactgaaacgcctgaa Predict TransTerm conf > 70================================================ Find igs database================================================ Query_seq: PG1389:PG1391|PG1389:PG1391:DNA-binding protein, histone-like family:hypothetical protein:<-->:1471419..1471809 391 ttgttctgtcttacttccatgaaaacttccgaagagcctcctgaccggctcatcaggctccaaatatagacattataaacaggatctcccataagagtatagtatcctctcatatgagaccatagtatcctctcatgtgagaccatagtatcctctcatgtgagaccatagtatcctctcataggagaccatagtatcctctcataggagaccatagtatcctctcatatgagaccatagtattctctcatatgagaccatagtatcctctcgtgtgagaccatagtatcctctcataggagaccatagtatcctctcatgtgagaccatagtatattctcatcattatataatatctacatttgcaatactaagaactgaaacgcctgaa Intra-Species Hit: Count: 13 Min: 1 Max: 391 Len: 391 Subject: NC_002950_PG1389_PG1391|DNA-binding protein, histone-like family:hypothetical protein|NEGATIVE:POSITIVE|[1471419,1471809]|391 HSP 1 e-value: 0.0 bit: 775.0 Len: 391 Query Start:1 Query End:391 Subject Strand: POSITIVE Subject Start: 1 Subject End: 391 ttgttctgtcttacttccatgaaaacttccgaagagcctcctgaccggctcatcaggctccaaatatagacattataaacaggatctcccataagagtatagtatcctctcatatgagaccatagtatcctctcatgtgagaccatagtatcctctcatgtgagaccatagtatcctctcataggagaccatagtatcctctcataggagaccatagtatcctctcatatgagaccatagtattctctcatatgagaccatagtatcctctcgtgtgagaccatagtatcctctcataggagaccatagtatcctctcatgtgagaccatagtatattctcatcattatataatatctacatttgcaatactaagaactgaaacgcctgaa ttgttctgtcttacttccatgaaaacttccgaagagcctcctgaccggctcatcaggctccaaatatagacattataaacaggatctcccataagagtatagtatcctctcatatgagaccatagtatcctctcatgtgagaccatagtatcctctcatgtgagaccatagtatcctctcataggagaccatagtatcctctcataggagaccatagtatcctctcatatgagaccatagtattctctcatatgagaccatagtatcctctcgtgtgagaccatagtatcctctcataggagaccatagtatcctctcatgtgagaccatagtatattctcatcattatataatatctacatttgcaatactaagaactgaaacgcctgaa Subject: NC_002950_PG1714_PG1715|pyridoxamine-phosphate oxidase:hypothetical protein|NEGATIVE:NEGATIVE|[1802583,1803482]|900 HSP 1 e-value: 1.0E-100 bit: 367.0 Len: 237 Query Start:99 Query End:335 Subject Strand: NEGATIVE Subject Start: 304 Subject End: 540 ..................................................................................................atagtatcctctcatatgagaccatagtatcctctcatgtgagaccatagtatcctctcatgtgagaccatagtatcctctcataggagaccatagtatcctctcataggagaccatagtatcctctcatatgagaccatagtattctctcatatgagaccatagtatcctctcgtgtgagaccatagtatcctctcataggagaccatagtatcctctcatgtgagaccatagtat........................................................ ..................................................................................................atagtatcctctcatgtgagaccatagtatcctctcatacgagaccatagtatcctctcatgtaagaccatagtatcctctcatgtaagaccatagtatcctctcatgtgagaccatagtatcctctcatatgagaccatagtatcctctcatatgagaccatagtatcctctcatgtgagaccatagtatcctctcatatgagaccatagtatcctctcatatgagaccatagtat........................................................ HSP 2 e-value: 3.0E-96 bit: 353.0 Len: 222 Query Start:99 Query End:320 Subject Strand: NEGATIVE Subject Start: 296 Subject End: 517 ..................................................................................................atagtatcctctcatatgagaccatagtatcctctcatgtgagaccatagtatcctctcatgtgagaccatagtatcctctcataggagaccatagtatcctctcataggagaccatagtatcctctcatatgagaccatagtattctctcatatgagaccatagtatcctctcgtgtgagaccatagtatcctctcataggagaccatagtatcctctcat....................................................................... ..................................................................................................atagtatcctctcatacgagaccatagtatcctctcatgtaagaccatagtatcctctcatgtaagaccatagtatcctctcatgtgagaccatagtatcctctcatatgagaccatagtatcctctcatatgagaccatagtatcctctcatgtgagaccatagtatcctctcatatgagaccatagtatcctctcatatgagaccatagtatcctctcat....................................................................... HSP 3 e-value: 7.0E-88 bit: 325.0 Len: 200 Query Start:99 Query End:298 Subject Strand: NEGATIVE Subject Start: 295 Subject End: 494 ..................................................................................................atagtatcctctcatatgagaccatagtatcctctcatgtgagaccatagtatcctctcatgtgagaccatagtatcctctcataggagaccatagtatcctctcataggagaccatagtatcctctcatatgagaccatagtattctctcatatgagaccatagtatcctctcgtgtgagaccatagtatcctctcata............................................................................................. ..................................................................................................atagtatcctctcatgtaagaccatagtatcctctcatgtaagaccatagtatcctctcatgtgagaccatagtatcctctcatatgagaccatagtatcctctcatatgagaccatagtatcctctcatgtgagaccatagtatcctctcatatgagaccatagtatcctctcatatgagaccatagtatcctctcata............................................................................................. HSP 4 e-value: 6.0E-85 bit: 315.0 Len: 219 Query Start:117 Query End:335 Subject Strand: NEGATIVE Subject Start: 327 Subject End: 545 ....................................................................................................................agaccatagtatcctctcatgtgagaccatagtatcctctcatgtgagaccatagtatcctctcataggagaccatagtatcctctcataggagaccatagtatcctctcatatgagaccatagtattctctcatatgagaccatagtatcctctcgtgtgagaccatagtatcctctcataggagaccatagtatcctctcatgtgagaccatagtat........................................................ ....................................................................................................................agaccatagtatcctctcatgtgagaccatagtatcctctcatacgagaccatagtatcctctcatgtaagaccatagtatcctctcatgtaagaccatagtatcctctcatgtgagaccatagtatcctctcatatgagaccatagtatcctctcatatgagaccatagtatcctctcatgtgagaccatagtatcctctcatatgagaccatagtat........................................................ HSP 5 e-value: 8.0E-66 bit: 252.0 Len: 155 Query Start:99 Query End:253 Subject Strand: NEGATIVE Subject Start: 294 Subject End: 448 ..................................................................................................atagtatcctctcatatgagaccatagtatcctctcatgtgagaccatagtatcctctcatgtgagaccatagtatcctctcataggagaccatagtatcctctcataggagaccatagtatcctctcatatgagaccatagtattctctcatat.......................................................................................................................................... ..................................................................................................atagtatcctctcatgtgagaccatagtatcctctcatatgagaccatagtatcctctcatatgagaccatagtatcctctcatgtgagaccatagtatcctctcatatgagaccatagtatcctctcatatgagaccatagtatcctctcatat.......................................................................................................................................... Subject: NC_002950_PG1556_PG1559|hypothetical protein:aminomethyltransferase|POSITIVE:NEGATIVE|[163706 2,1637993]|932 HSP 1 e-value: 5.0E-98 bit: 359.0 Len: 237 Query Start:99 Query End:335 Subject Strand: NEGATIVE Subject Start: 338 Subject End: 574 ..................................................................................................atagtatcctctcatatgagaccatagtatcctctcatgtgagaccatagtatcctctcatgtgagaccatagtatcctctcataggagaccatagtatcctctcataggagaccatagtatcctctcatatgagaccatagtattctctcatatgagaccatagtatcctctcgtgtgagaccatagtatcctctcataggagaccatagtatcctctcatgtgagaccatagtat........................................................ ..................................................................................................atagtatcctctcgtatgagaccataatatcctctcatgtgagaccatagtatcctctcatgtgagaccatagtatcctctcatatgagaccatagtatcctctcatatgagaccatagtatcctctcgtatgagaccatagtatcctctcgtatgagaccatagtatcctcttatgtgagaccatagtatcctctcatgtgagaccataatatcttctcatgcgagaccatagtat........................................................ HSP 2 e-value: 3.0E-93 bit: 343.0 Len: 233 Query Start:103 Query End:335 Subject Strand: NEGATIVE Subject Start: 315 Subject End: 547 ......................................................................................................tatcctctcatatgagaccatagtatcctctcatgtgagaccatagtatcctctcatgtgagaccatagtatcctctcataggagaccatagtatcctctcataggagaccatagtatcctctcatatgagaccatagtattctctcatatgagaccatagtatcctctcgtgtgagaccatagtatcctctcataggagaccatagtatcctctcatgtgagaccatagtat........................................................ ......................................................................................................tatcctctcatgtgagaccatagtatcctctcatgtgagaccatagtatcctctcatatgagaccatagtatcctctcatatgagaccatagtatcctctcgtatgagaccatagtatcctctcgtatgagaccatagtatcctcttatgtgagaccatagtatcctctcatgtgagaccataatatcttctcatgcgagaccatagtatcctctcatatgagaccatagtat........................................................ HSP 3 e-value: 4.0E-92 bit: 339.0 Len: 227 Query Start:117 Query End:343 Subject Strand: NEGATIVE Subject Start: 353 Subject End: 579 ....................................................................................................................agaccatagtatcctctcatgtgagaccatagtatcctctcatgtgagaccatagtatcctctcataggagaccatagtatcctctcataggagaccatagtatcctctcatatgagaccatagtattctctcatatgagaccatagtatcctctcgtgtgagaccatagtatcctctcataggagaccatagtatcctctcatgtgagaccatagtatattctcat................................................ ....................................................................................................................agaccatagtatcctctcgtatgagaccataatatcctctcatgtgagaccatagtatcctctcatgtgagaccatagtatcctctcatatgagaccatagtatcctctcatatgagaccatagtatcctctcgtatgagaccatagtatcctctcgtatgagaccatagtatcctcttatgtgagaccatagtatcctctcatgtgagaccataatatcttctcat................................................ HSP 4 e-value: 2.0E-88 bit: 327.0 Len: 233 Query Start:99 Query End:331 Subject Strand: NEGATIVE Subject Start: 296 Subject End: 528 ..................................................................................................atagtatcctctcatatgagaccatagtatcctctcatgtgagaccatagtatcctctcatgtgagaccatagtatcctctcataggagaccatagtatcctctcataggagaccatagtatcctctcatatgagaccatagtattctctcatatgagaccatagtatcctctcgtgtgagaccatagtatcctctcataggagaccatagtatcctctcatgtgagaccata............................................................ ..................................................................................................atagtatcctctcatgtgagaccatagtatcctctcatatgagaccatagtatcctctcatatgagaccatagtatcctctcgtatgagaccatagtatcctctcgtatgagaccatagtatcctcttatgtgagaccatagtatcctctcatgtgagaccataatatcttctcatgcgagaccatagtatcctctcatatgagaccatagtatcctctcatgagagaccata............................................................ HSP 5 e-value: 6.0E-76 bit: 285.0 Len: 220 Query Start:99 Query End:318 Subject Strand: NEGATIVE Subject Start: 286 Subject End: 505 ..................................................................................................atagtatcctctcatatgagaccatagtatcctctcatgtgagaccatagtatcctctcatgtgagaccatagtatcctctcataggagaccatagtatcctctcataggagaccatagtatcctctcatatgagaccatagtattctctcatatgagaccatagtatcctctcgtgtgagaccatagtatcctctcataggagaccatagtatcctctc......................................................................... ..................................................................................................atagtatcctctcatatgagaccatagtatcctctcatatgagaccatagtatcctctcgtatgagaccatagtatcctctcgtatgagaccatagtatcctcttatgtgagaccatagtatcctctcatgtgagaccataatatcttctcatgcgagaccatagtatcctctcatatgagaccatagtatcctctcatgagagaccataatatcctctc......................................................................... HSP 6 e-value: 1.0E-61 bit: 238.0 Len: 176 Query Start:99 Query End:274 Subject Strand: NEGATIVE Subject Start: 284 Subject End: 459 ..................................................................................................atagtatcctctcatatgagaccatagtatcctctcatgtgagaccatagtatcctctcatgtgagaccatagtatcctctcataggagaccatagtatcctctcataggagaccatagtatcctctcatatgagaccatagtattctctcatatgagaccatagtatcctctcgt..................................................................................................................... ..................................................................................................atagtatcctctcgtatgagaccatagtatcctctcgtatgagaccatagtatcctcttatgtgagaccatagtatcctctcatgtgagaccataatatcttctcatgcgagaccatagtatcctctcatatgagaccatagtatcctctcatgagagaccataatatcctctcgt..................................................................................................................... HSP 7 e-value: 2.0E-54 bit: 214.0 Len: 156 Query Start:99 Query End:254 Subject Strand: NEGATIVE Subject Start: 281 Subject End: 436 ..................................................................................................atagtatcctctcatatgagaccatagtatcctctcatgtgagaccatagtatcctctcatgtgagaccatagtatcctctcataggagaccatagtatcctctcataggagaccatagtatcctctcatatgagaccatagtattctctcatatg......................................................................................................................................... ..................................................................................................atagtatcctctcgtatgagaccatagtatcctcttatgtgagaccatagtatcctctcatgtgagaccataatatcttctcatgcgagaccatagtatcctctcatatgagaccatagtatcctctcatgagagaccataatatcctctcgtatg......................................................................................................................................... Subject: NC_002950_PG0626_PG0627|hypothetical protein:RNA-binding protein|POSITIVE:NEGATIVE|[680407,681231]|825 HSP 1 e-value: 7.0E-97 bit: 355.0 Len: 219 Query Start:117 Query End:335 Subject Strand: NEGATIVE Subject Start: 337 Subject End: 555 ....................................................................................................................agaccatagtatcctctcatgtgagaccatagtatcctctcatgtgagaccatagtatcctctcataggagaccatagtatcctctcataggagaccatagtatcctctcatatgagaccatagtattctctcatatgagaccatagtatcctctcgtgtgagaccatagtatcctctcataggagaccatagtatcctctcatgtgagaccatagtat........................................................ ....................................................................................................................agaccatagtatcctctcatgtgagaccatagtatcctctcatatgagaccatagtatcctctcataggagaccatagtatcctctcgtatgagaccatagtatcctctcatagtagaccatagtatcctctcgtatgagaccatagtatcctctcgtatgagaccatagtatcctctcataggagaccatagtatcctctcgtatgagaccatagtat........................................................ HSP 2 e-value: 1.0E-95 bit: 351.0 Len: 237 Query Start:99 Query End:335 Subject Strand: NEGATIVE Subject Start: 314 Subject End: 550 ..................................................................................................atagtatcctctcatatgagaccatagtatcctctcatgtgagaccatagtatcctctcatgtgagaccatagtatcctctcataggagaccatagtatcctctcataggagaccatagtatcctctcatatgagaccatagtattctctcatatgagaccatagtatcctctcgtgtgagaccatagtatcctctcataggagaccatagtatcctctcatgtgagaccatagtat........................................................ ..................................................................................................atagtatcctctcatgtgagaccatagtatcctctcatatgagaccatagtatcctctcataggagaccatagtatcctctcgtatgagaccatagtatcctctcatagtagaccatagtatcctctcgtatgagaccatagtatcctctcgtatgagaccatagtatcctctcataggagaccatagtatcctctcgtatgagaccatagtatcctctcatgtgagaccatagtat........................................................ HSP 3 e-value: 3.0E-93 bit: 343.0 Len: 237 Query Start:99 Query End:335 Subject Strand: NEGATIVE Subject Start: 291 Subject End: 527 ..................................................................................................atagtatcctctcatatgagaccatagtatcctctcatgtgagaccatagtatcctctcatgtgagaccatagtatcctctcataggagaccatagtatcctctcataggagaccatagtatcctctcatatgagaccatagtattctctcatatgagaccatagtatcctctcgtgtgagaccatagtatcctctcataggagaccatagtatcctctcatgtgagaccatagtat........................................................ ..................................................................................................atagtatcctctcatatgagaccatagtatcctctcataggagaccatagtatcctctcgtatgagaccatagtatcctctcatagtagaccatagtatcctctcgtatgagaccatagtatcctctcgtatgagaccatagtatcctctcataggagaccatagtatcctctcgtatgagaccatagtatcctctcatgtgagaccatagtattctctcataggagaccatagtat........................................................ HSP 4 e-value: 7.0E-91 bit: 335.0 Len: 237 Query Start:99 Query End:335 Subject Strand: NEGATIVE Subject Start: 245 Subject End: 481 ..................................................................................................atagtatcctctcatatgagaccatagtatcctctcatgtgagaccatagtatcctctcatgtgagaccatagtatcctctcataggagaccatagtatcctctcataggagaccatagtatcctctcatatgagaccatagtattctctcatatgagaccatagtatcctctcgtgtgagaccatagtatcctctcataggagaccatagtatcctctcatgtgagaccatagtat........................................................ ..................................................................................................atagtatcctctcgtatgagaccatagtatcctctcatagtagaccatagtatcctctcgtatgagaccatagtatcctctcgtatgagaccatagtatcctctcataggagaccatagtatcctctcgtatgagaccatagtatcctctcatgtgagaccatagtattctctcataggagaccatagtatcctctcgtatgagaccatagtatcctctcatgtgagaccatagtat........................................................ HSP 5 e-value: 7.0E-91 bit: 335.0 Len: 237 Query Start:99 Query End:335 Subject Strand: NEGATIVE Subject Start: 268 Subject End: 504 ..................................................................................................atagtatcctctcatatgagaccatagtatcctctcatgtgagaccatagtatcctctcatgtgagaccatagtatcctctcataggagaccatagtatcctctcataggagaccatagtatcctctcatatgagaccatagtattctctcatatgagaccatagtatcctctcgtgtgagaccatagtatcctctcataggagaccatagtatcctctcatgtgagaccatagtat........................................................ ..................................................................................................atagtatcctctcataggagaccatagtatcctctcgtatgagaccatagtatcctctcatagtagaccatagtatcctctcgtatgagaccatagtatcctctcgtatgagaccatagtatcctctcataggagaccatagtatcctctcgtatgagaccatagtatcctctcatgtgagaccatagtattctctcataggagaccatagtatcctctcgtatgagaccatagtat........................................................ HSP 6 e-value: 3.0E-90 bit: 333.0 Len: 220 Query Start:99 Query End:318 Subject Strand: NEGATIVE Subject Start: 239 Subject End: 458 ..................................................................................................atagtatcctctcatatgagaccatagtatcctctcatgtgagaccatagtatcctctcatgtgagaccatagtatcctctcataggagaccatagtatcctctcataggagaccatagtatcctctcatatgagaccatagtattctctcatatgagaccatagtatcctctcgtgtgagaccatagtatcctctcataggagaccatagtatcctctc......................................................................... ..................................................................................................atagtatcctctcatagtagaccatagtatcctctcgtatgagaccatagtatcctctcgtatgagaccatagtatcctctcataggagaccatagtatcctctcgtatgagaccatagtatcctctcatgtgagaccatagtattctctcataggagaccatagtatcctctcgtatgagaccatagtatcctctcatgtgagaccatagtatcctctc......................................................................... HSP 7 e-value: 8.0E-69 bit: 262.0 Len: 176 Query Start:99 Query End:274 Subject Strand: NEGATIVE Subject Start: 237 Subject End: 412 ..................................................................................................atagtatcctctcatatgagaccatagtatcctctcatgtgagaccatagtatcctctcatgtgagaccatagtatcctctcataggagaccatagtatcctctcataggagaccatagtatcctctcatatgagaccatagtattctctcatatgagaccatagtatcctctcgt..................................................................................................................... ..................................................................................................atagtatcctctcgtatgagaccatagtatcctctcataggagaccatagtatcctctcgtatgagaccatagtatcctctcatgtgagaccatagtattctctcataggagaccatagtatcctctcgtatgagaccatagtatcctctcatgtgagaccatagtatcctctcgt..................................................................................................................... Subject: NC_002950_PG2159_PG2161|protoporphyrinogen oxidase:transcriptional regulator, AraC family|POSITIVE:NEGATIVE|[2265935,2266806]|872 HSP 1 e-value: 1.0E-92 bit: 341.0 Len: 224 Query Start:99 Query End:322 Subject Strand: POSITIVE Subject Start: 365 Subject End: 588 ..................................................................................................atagtatcctctcatatgagaccatagtatcctctcatgtgagaccatagtatcctctcatgtgagaccatagtatcctctcataggagaccatagtatcctctcataggagaccatagtatcctctcatatgagaccatagtattctctcatatgagaccatagtatcctctcgtgtgagaccatagtatcctctcataggagaccatagtatcctctcatgt..................................................................... ..................................................................................................atagtatcctctcatgtgagagcatagtatcctctcatatgagaccatagtatcctctcgtgtaagaccatagtatcctctcataggagaccatagtattctctcatgtgagaccatagtatcctcttatgtgagaccatagtatcctctcgtatgagaccatagtatcctctcgtgtaagaccatagtatcctctcataggagaccatagtatcctctcatgt..................................................................... HSP 2 e-value: 7.0E-91 bit: 335.0 Len: 233 Query Start:103 Query End:335 Subject Strand: POSITIVE Subject Start: 323 Subject End: 555 ......................................................................................................tatcctctcatatgagaccatagtatcctctcatgtgagaccatagtatcctctcatgtgagaccatagtatcctctcataggagaccatagtatcctctcataggagaccatagtatcctctcatatgagaccatagtattctctcatatgagaccatagtatcctctcgtgtgagaccatagtatcctctcataggagaccatagtatcctctcatgtgagaccatagtat........................................................ ......................................................................................................tatcctctcatatgagaccatagtatcctctcgtgtaagaccatagtatcctctcatgtgagagcatagtatcctctcatatgagaccatagtatcctctcgtgtaagaccatagtatcctctcataggagaccatagtattctctcatgtgagaccatagtatcctcttatgtgagaccatagtatcctctcgtatgagaccatagtatcctctcgtgtaagaccatagtat........................................................ HSP 3 e-value: 2.0E-81 bit: 303.0 Len: 237 Query Start:99 Query End:335 Subject Strand: POSITIVE Subject Start: 296 Subject End: 532 ..................................................................................................atagtatcctctcatatgagaccatagtatcctctcatgtgagaccatagtatcctctcatgtgagaccatagtatcctctcataggagaccatagtatcctctcataggagaccatagtatcctctcatatgagaccatagtattctctcatatgagaccatagtatcctctcgtgtgagaccatagtatcctctcataggagaccatagtatcctctcatgtgagaccatagtat........................................................ ..................................................................................................atagtatcctctcatgtgagaccataatatcctctcatatgagaccatagtatcctctcgtgtaagaccatagtatcctctcatgtgagagcatagtatcctctcatatgagaccatagtatcctctcgtgtaagaccatagtatcctctcataggagaccatagtattctctcatgtgagaccatagtatcctcttatgtgagaccatagtatcctctcgtatgagaccatagtat........................................................ HSP 4 e-value: 2.0E-81 bit: 303.0 Len: 237 Query Start:99 Query End:335 Subject Strand: POSITIVE Subject Start: 342 Subject End: 578 ..................................................................................................atagtatcctctcatatgagaccatagtatcctctcatgtgagaccatagtatcctctcatgtgagaccatagtatcctctcataggagaccatagtatcctctcataggagaccatagtatcctctcatatgagaccatagtattctctcatatgagaccatagtatcctctcgtgtgagaccatagtatcctctcataggagaccatagtatcctctcatgtgagaccatagtat........................................................ ..................................................................................................atagtatcctctcgtgtaagaccatagtatcctctcatgtgagagcatagtatcctctcatatgagaccatagtatcctctcgtgtaagaccatagtatcctctcataggagaccatagtattctctcatgtgagaccatagtatcctcttatgtgagaccatagtatcctctcgtatgagaccatagtatcctctcgtgtaagaccatagtatcctctcataggagaccatagtat........................................................ HSP 5 e-value: 1.0E-70 bit: 268.0 Len: 215 Query Start:121 Query End:335 Subject Strand: POSITIVE Subject Start: 295 Subject End: 509 ........................................................................................................................catagtatcctctcatgtgagaccatagtatcctctcatgtgagaccatagtatcctctcataggagaccatagtatcctctcataggagaccatagtatcctctcatatgagaccatagtattctctcatatgagaccatagtatcctctcgtgtgagaccatagtatcctctcataggagaccatagtatcctctcatgtgagaccatagtat........................................................ ........................................................................................................................catagtatcctctcatgtgagaccataatatcctctcatatgagaccatagtatcctctcgtgtaagaccatagtatcctctcatgtgagagcatagtatcctctcatatgagaccatagtatcctctcgtgtaagaccatagtatcctctcataggagaccatagtattctctcatgtgagaccatagtatcctcttatgtgagaccatagtat........................................................ HSP 6 e-value: 2.0E-66 bit: 254.0 Len: 204 Query Start:94 Query End:297 Subject Strand: POSITIVE Subject Start: 383 Subject End: 586 .............................................................................................agagtatagtatcctctcatatgagaccatagtatcctctcatgtgagaccatagtatcctctcatgtgagaccatagtatcctctcataggagaccatagtatcctctcataggagaccatagtatcctctcatatgagaccatagtattctctcatatgagaccatagtatcctctcgtgtgagaccatagtatcctctcat.............................................................................................. .............................................................................................agagcatagtatcctctcatatgagaccatagtatcctctcgtgtaagaccatagtatcctctcataggagaccatagtattctctcatgtgagaccatagtatcctcttatgtgagaccatagtatcctctcgtatgagaccatagtatcctctcgtgtaagaccatagtatcctctcataggagaccatagtatcctctcat.............................................................................................. Subject: NC_002950_PG1117_PG1118|MATE efflux family protein:clpB protein|POSITIVE:NEGATIVE|[1191602,1192172]|571 HSP 1 e-value: 1.0E-92 bit: 341.0 Len: 224 Query Start:94 Query End:317 Subject Strand: NEGATIVE Subject Start: 218 Subject End: 441 .............................................................................................agagtatagtatcctctcatatgagaccatagtatcctctcatgtgagaccatagtatcctctcatgtgagaccatagtatcctctcataggagaccatagtatcctctcataggagaccatagtatcctctcatatgagaccatagtattctctcatatgagaccatagtatcctctcgtgtgagaccatagtatcctctcataggagaccatagtatcctct.......................................................................... .............................................................................................agaggatagtatcctctcatatgagaccatagtatcctctcatatgagaccatagtatcctctcgtatgagaccatagtatcctctcatatgagaccatagtatcctctcgtatgagaccatagtatcctctcatgtgagaccatagtatcctctcgtatgagaccatagtatcctctcatatgagaccatagtatcctctcatatgagaccatagtatcctct.......................................................................... HSP 2 e-value: 2.0E-91 bit: 337.0 Len: 214 Query Start:122 Query End:335 Subject Strand: NEGATIVE Subject Start: 223 Subject End: 436 .........................................................................................................................atagtatcctctcatgtgagaccatagtatcctctcatgtgagaccatagtatcctctcataggagaccatagtatcctctcataggagaccatagtatcctctcatatgagaccatagtattctctcatatgagaccatagtatcctctcgtgtgagaccatagtatcctctcataggagaccatagtatcctctcatgtgagaccatagtat........................................................ .........................................................................................................................atagtatcctctcatatgagaccatagtatcctctcatatgagaccatagtatcctctcgtatgagaccatagtatcctctcatatgagaccatagtatcctctcgtatgagaccatagtatcctctcatgtgagaccatagtatcctctcgtatgagaccatagtatcctctcatatgagaccatagtatcctctcatatgagaccatagtat........................................................ HSP 3 e-value: 1.0E-67 bit: 258.0 Len: 174 Query Start:99 Query End:272 Subject Strand: NEGATIVE Subject Start: 194 Subject End: 367 ..................................................................................................atagtatcctctcatatgagaccatagtatcctctcatgtgagaccatagtatcctctcatgtgagaccatagtatcctctcataggagaccatagtatcctctcataggagaccatagtatcctctcatatgagaccatagtattctctcatatgagaccatagtatcctctc....................................................................................................................... ..................................................................................................atagtatcctctcatatgagaccatagtatcctctcgtatgagaccatagtatcctctcatgtgagaccatagtatcctctcgtatgagaccatagtatcctctcatatgagaccatagtatcctctcatatgagaccatagtatcctcttatataagactatactattctctc....................................................................................................................... Subject: NC_002950_PG1426_PG1427|hypothetical protein:thiol protease/hemagglutinin PrtT precursor, putative|NEGATIVE:NEGATIVE|[1511401,1511954]|554 HSP 1 e-value: 4.0E-89 bit: 329.0 Len: 218 Query Start:103 Query End:320 Subject Strand: POSITIVE Subject Start: 3 Subject End: 220 ......................................................................................................tatcctctcatatgagaccatagtatcctctcatgtgagaccatagtatcctctcatgtgagaccatagtatcctctcataggagaccatagtatcctctcataggagaccatagtatcctctcatatgagaccatagtattctctcatatgagaccatagtatcctctcgtgtgagaccatagtatcctctcataggagaccatagtatcctctcat....................................................................... ......................................................................................................tatcctctcataggagaccatagtatcctctcatgtgagaccatagtatcctctcatacgagaccatagtatcctctcatacgagaccatagtatcctctcatgtgagaccatagtatcctctcatacgagaccatagtatcctctcatacgagaccatagtatcctctcatacgagaccatagtatcctctcatacgagaccatagtatcctctcat....................................................................... HSP 2 e-value: 3.0E-84 bit: 313.0 Len: 210 Query Start:126 Query End:335 Subject Strand: POSITIVE Subject Start: 3 Subject End: 212 .............................................................................................................................tatcctctcatgtgagaccatagtatcctctcatgtgagaccatagtatcctctcataggagaccatagtatcctctcataggagaccatagtatcctctcatatgagaccatagtattctctcatatgagaccatagtatcctctcgtgtgagaccatagtatcctctcataggagaccatagtatcctctcatgtgagaccatagtat........................................................ .............................................................................................................................tatcctctcataggagaccatagtatcctctcatgtgagaccatagtatcctctcatacgagaccatagtatcctctcatacgagaccatagtatcctctcatgtgagaccatagtatcctctcatacgagaccatagtatcctctcatacgagaccatagtatcctctcatacgagaccatagtatcctctcatacgagaccatagtat........................................................ HSP 3 e-value: 2.0E-78 bit: 293.0 Len: 204 Query Start:99 Query End:302 Subject Strand: POSITIVE Subject Start: 22 Subject End: 225 ..................................................................................................atagtatcctctcatatgagaccatagtatcctctcatgtgagaccatagtatcctctcatgtgagaccatagtatcctctcataggagaccatagtatcctctcataggagaccatagtatcctctcatatgagaccatagtattctctcatatgagaccatagtatcctctcgtgtgagaccatagtatcctctcataggag......................................................................................... ..................................................................................................atagtatcctctcatgtgagaccatagtatcctctcatacgagaccatagtatcctctcatacgagaccatagtatcctctcatgtgagaccatagtatcctctcatacgagaccatagtatcctctcatacgagaccatagtatcctctcatacgagaccatagtatcctctcatacgagaccatagtatcctctcataggag......................................................................................... Subject: NC_002950_PG0265_PG0267|hypothetical protein:arginyl-tRNA synthetase|NEGATIVE:POSITIVE|[298642,299239]|598 HSP 1 e-value: 2.0E-88 bit: 327.0 Len: 197 Query Start:99 Query End:295 Subject Strand: POSITIVE Subject Start: 22 Subject End: 218 ..................................................................................................atagtatcctctcatatgagaccatagtatcctctcatgtgagaccatagtatcctctcatgtgagaccatagtatcctctcataggagaccatagtatcctctcataggagaccatagtatcctctcatatgagaccatagtattctctcatatgagaccatagtatcctctcgtgtgagaccatagtatcctctc................................................................................................ ..................................................................................................atagtatcctctcatatgagaccatagtatcctctcatgtgagaccatagtatcctctcatatgagaccatagtatcctctcatgtgagactatagtatcctctcataggagaccatagtatcctctcatttgagaccatagtatcctctcatatgagaccatagtatcctctcatgtgagatcatagtatcctctc................................................................................................ HSP 2 e-value: 7.0E-88 bit: 325.0 Len: 212 Query Start:124 Query End:335 Subject Strand: POSITIVE Subject Start: 1 Subject End: 212 ...........................................................................................................................agtatcctctcatgtgagaccatagtatcctctcatgtgagaccatagtatcctctcataggagaccatagtatcctctcataggagaccatagtatcctctcatatgagaccatagtattctctcatatgagaccatagtatcctctcgtgtgagaccatagtatcctctcataggagaccatagtatcctctcatgtgagaccatagtat........................................................ ...........................................................................................................................agtatcctctcatgtgagaccatagtatcctctcatatgagaccatagtatcctctcatgtgagaccatagtatcctctcatatgagaccatagtatcctctcatgtgagactatagtatcctctcataggagaccatagtatcctctcatttgagaccatagtatcctctcatatgagaccatagtatcctctcatgtgagatcatagtat........................................................ HSP 3 e-value: 1.0E-86 bit: 321.0 Len: 218 Query Start:101 Query End:318 Subject Strand: POSITIVE Subject Start: 1 Subject End: 218 ....................................................................................................agtatcctctcatatgagaccatagtatcctctcatgtgagaccatagtatcctctcatgtgagaccatagtatcctctcataggagaccatagtatcctctcataggagaccatagtatcctctcatatgagaccatagtattctctcatatgagaccatagtatcctctcgtgtgagaccatagtatcctctcataggagaccatagtatcctctc......................................................................... ....................................................................................................agtatcctctcatgtgagaccatagtatcctctcatatgagaccatagtatcctctcatgtgagaccatagtatcctctcatatgagaccatagtatcctctcatgtgagactatagtatcctctcataggagaccatagtatcctctcatttgagaccatagtatcctctcatatgagaccatagtatcctctcatgtgagatcatagtatcctctc......................................................................... HSP 4 e-value: 1.0E-76 bit: 287.0 Len: 177 Query Start:99 Query End:275 Subject Strand: POSITIVE Subject Start: 45 Subject End: 221 ..................................................................................................atagtatcctctcatatgagaccatagtatcctctcatgtgagaccatagtatcctctcatgtgagaccatagtatcctctcataggagaccatagtatcctctcataggagaccatagtatcctctcatatgagaccatagtattctctcatatgagaccatagtatcctctcgtg.................................................................................................................... ..................................................................................................atagtatcctctcatgtgagaccatagtatcctctcatatgagaccatagtatcctctcatgtgagactatagtatcctctcataggagaccatagtatcctctcatttgagaccatagtatcctctcatatgagaccatagtatcctctcatgtgagatcatagtatcctctcgtg.................................................................................................................... HSP 5 e-value: 6.0E-39 bit: 163.0 Len: 106 Query Start:98 Query End:203 Subject Strand: POSITIVE Subject Start: 113 Subject End: 218 .................................................................................................tatagtatcctctcatatgagaccatagtatcctctcatgtgagaccatagtatcctctcatgtgagaccatagtatcctctcataggagaccatagtatcctctc............................................................................................................................................................................................ .................................................................................................tatagtatcctctcataggagaccatagtatcctctcatttgagaccatagtatcctctcatatgagaccatagtatcctctcatgtgagatcatagtatcctctc............................................................................................................................................................................................ Subject: NC_002950_PG0493_PG0494|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[534991,535183]|193 HSP 1 e-value: 1.0E-83 bit: 311.0 Len: 193 Query Start:101 Query End:293 Subject Strand: POSITIVE Subject Start: 1 Subject End: 193 ....................................................................................................agtatcctctcatatgagaccatagtatcctctcatgtgagaccatagtatcctctcatgtgagaccatagtatcctctcataggagaccatagtatcctctcataggagaccatagtatcctctcatatgagaccatagtattctctcatatgagaccatagtatcctctcgtgtgagaccatagtatcctc.................................................................................................. ....................................................................................................agtatcctctcataggagaccatagtatcctctcatgcgagaccatagtatcctctcatatgagaccatagtatcctctcgtatgagaccatagtatcctctcataggagaccatagtatcctctcataggagaccatagtatcctctcataggagaccatagtatcctctcatgtgagaccatagtatcctc.................................................................................................. HSP 2 e-value: 1.0E-76 bit: 287.0 Len: 189 Query Start:147 Query End:335 Subject Strand: POSITIVE Subject Start: 1 Subject End: 189 ..................................................................................................................................................agtatcctctcatgtgagaccatagtatcctctcataggagaccatagtatcctctcataggagaccatagtatcctctcatatgagaccatagtattctctcatatgagaccatagtatcctctcgtgtgagaccatagtatcctctcataggagaccatagtatcctctcatgtgagaccatagtat........................................................ ..................................................................................................................................................agtatcctctcataggagaccatagtatcctctcatgcgagaccatagtatcctctcatatgagaccatagtatcctctcgtatgagaccatagtatcctctcataggagaccatagtatcctctcataggagaccatagtatcctctcataggagaccatagtatcctctcatgtgagaccatagtat........................................................ HSP 3 e-value: 1.0E-73 bit: 278.0 Len: 172 Query Start:99 Query End:270 Subject Strand: POSITIVE Subject Start: 22 Subject End: 193 ..................................................................................................atagtatcctctcatatgagaccatagtatcctctcatgtgagaccatagtatcctctcatgtgagaccatagtatcctctcataggagaccatagtatcctctcataggagaccatagtatcctctcatatgagaccatagtattctctcatatgagaccatagtatcctc......................................................................................................................... ..................................................................................................atagtatcctctcatgcgagaccatagtatcctctcatatgagaccatagtatcctctcgtatgagaccatagtatcctctcataggagaccatagtatcctctcataggagaccatagtatcctctcataggagaccatagtatcctctcatgtgagaccatagtatcctc......................................................................................................................... HSP 4 e-value: 9.0E-72 bit: 272.0 Len: 193 Query Start:124 Query End:316 Subject Strand: POSITIVE Subject Start: 1 Subject End: 193 ...........................................................................................................................agtatcctctcatgtgagaccatagtatcctctcatgtgagaccatagtatcctctcataggagaccatagtatcctctcataggagaccatagtatcctctcatatgagaccatagtattctctcatatgagaccatagtatcctctcgtgtgagaccatagtatcctctcataggagaccatagtatcctc........................................................................... ...........................................................................................................................agtatcctctcataggagaccatagtatcctctcatgcgagaccatagtatcctctcatatgagaccatagtatcctctcgtatgagaccatagtatcctctcataggagaccatagtatcctctcataggagaccatagtatcctctcataggagaccatagtatcctctcatgtgagaccatagtatcctc........................................................................... Subject: NC_002950_PG0088_PG0090|peptidase, M16 family:Dps family protein|POSITIVE:POSITIVE|[104633,105663]|1031 HSP 1 e-value: 6.0E-82 bit: 305.0 Len: 202 Query Start:117 Query End:318 Subject Strand: POSITIVE Subject Start: 428 Subject End: 629 ....................................................................................................................agaccatagtatcctctcatgtgagaccatagtatcctctcatgtgagaccatagtatcctctcataggagaccatagtatcctctcataggagaccatagtatcctctcatatgagaccatagtattctctcatatgagaccatagtatcctctcgtgtgagaccatagtatcctctcataggagaccatagtatcctctc......................................................................... ....................................................................................................................agaccatagtatcctctcatgtgagaccatagtatcctctcatatgagaccatagtatcctctcatgtgagaccatagtatcctctcatatgagaccatagtatcctctcatatgagaccatagtatcctctcatgcgagaccatagtatcctctcatgcgagaccatagtatcctctcgtataagaccatagtatcctctc......................................................................... HSP 2 e-value: 2.0E-81 bit: 303.0 Len: 197 Query Start:99 Query End:295 Subject Strand: POSITIVE Subject Start: 433 Subject End: 629 ..................................................................................................atagtatcctctcatatgagaccatagtatcctctcatgtgagaccatagtatcctctcatgtgagaccatagtatcctctcataggagaccatagtatcctctcataggagaccatagtatcctctcatatgagaccatagtattctctcatatgagaccatagtatcctctcgtgtgagaccatagtatcctctc................................................................................................ ..................................................................................................atagtatcctctcatgtgagaccatagtatcctctcatatgagaccatagtatcctctcatgtgagaccatagtatcctctcatatgagaccatagtatcctctcatatgagaccatagtatcctctcatgcgagaccatagtatcctctcatgcgagaccatagtatcctctcgtataagaccatagtatcctctc................................................................................................ HSP 3 e-value: 1.0E-80 bit: 301.0 Len: 196 Query Start:140 Query End:335 Subject Strand: POSITIVE Subject Start: 428 Subject End: 623 ...........................................................................................................................................agaccatagtatcctctcatgtgagaccatagtatcctctcataggagaccatagtatcctctcataggagaccatagtatcctctcatatgagaccatagtattctctcatatgagaccatagtatcctctcgtgtgagaccatagtatcctctcataggagaccatagtatcctctcatgtgagaccatagtat........................................................ ...........................................................................................................................................agaccatagtatcctctcatgtgagaccatagtatcctctcatatgagaccatagtatcctctcatgtgagaccatagtatcctctcatatgagaccatagtatcctctcatatgagaccatagtatcctctcatgcgagaccatagtatcctctcatgcgagaccatagtatcctctcgtataagaccatagtat........................................................ HSP 4 e-value: 4.0E-74 bit: 280.0 Len: 177 Query Start:99 Query End:275 Subject Strand: POSITIVE Subject Start: 456 Subject End: 632 ..................................................................................................atagtatcctctcatatgagaccatagtatcctctcatgtgagaccatagtatcctctcatgtgagaccatagtatcctctcataggagaccatagtatcctctcataggagaccatagtatcctctcatatgagaccatagtattctctcatatgagaccatagtatcctctcgtg.................................................................................................................... ..................................................................................................atagtatcctctcatatgagaccatagtatcctctcatgtgagaccatagtatcctctcatatgagaccatagtatcctctcatatgagaccatagtatcctctcatgcgagaccatagtatcctctcatgcgagaccatagtatcctctcgtataagaccatagtatcctctcgtg.................................................................................................................... Subject: NC_002950_PG0585_PG0587|YqeY family protein:yadS protein|POSITIVE:NEGATIVE|[643862,644701]|840 HSP 1 e-value: 4.0E-80 bit: 299.0 Len: 191 Query Start:117 Query End:307 Subject Strand: NEGATIVE Subject Start: 297 Subject End: 487 ....................................................................................................................agaccatagtatcctctcatgtgagaccatagtatcctctcatgtgagaccatagtatcctctcataggagaccatagtatcctctcataggagaccatagtatcctctcatatgagaccatagtattctctcatatgagaccatagtatcctctcgtgtgagaccatagtatcctctcataggagaccat.................................................................................... ....................................................................................................................agaccatagtatcctctcgtatgagaccatagtatcctctcataggagaccatagtatcctctcataggagaccatagtatcctctcgtaggagaccatagtatcctctcgtatgagaccatagtatcctctcataggagaccatagtatcctctcgtaggagaccatagtatcctctcataggagaccat.................................................................................... HSP 2 e-value: 2.0E-75 bit: 283.0 Len: 191 Query Start:140 Query End:330 Subject Strand: NEGATIVE Subject Start: 297 Subject End: 487 ...........................................................................................................................................agaccatagtatcctctcatgtgagaccatagtatcctctcataggagaccatagtatcctctcataggagaccatagtatcctctcatatgagaccatagtattctctcatatgagaccatagtatcctctcgtgtgagaccatagtatcctctcataggagaccatagtatcctctcatgtgagaccat............................................................. ...........................................................................................................................................agaccatagtatcctctcgtatgagaccatagtatcctctcataggagaccatagtatcctctcataggagaccatagtatcctctcgtaggagaccatagtatcctctcgtatgagaccatagtatcctctcataggagaccatagtatcctctcgtaggagaccatagtatcctctcataggagaccat............................................................. HSP 3 e-value: 2.0E-69 bit: 264.0 Len: 173 Query Start:163 Query End:335 Subject Strand: NEGATIVE Subject Start: 315 Subject End: 487 ..................................................................................................................................................................agaccatagtatcctctcataggagaccatagtatcctctcataggagaccatagtatcctctcatatgagaccatagtattctctcatatgagaccatagtatcctctcgtgtgagaccatagtatcctctcataggagaccatagtatcctctcatgtgagaccatagtat........................................................ ..................................................................................................................................................................agaccatagtatcctctcgtatgagaccatagtatcctctcataggagaccatagtatcctctcataggagaccatagtatcctctcgtaggagaccatagtatcctctcgtatgagaccatagtatcctctcataggagaccatagtatcctctcgtaggagaccatagtat........................................................ HSP 4 e-value: 3.0E-65 bit: 250.0 Len: 174 Query Start:99 Query End:272 Subject Strand: NEGATIVE Subject Start: 309 Subject End: 482 ..................................................................................................atagtatcctctcatatgagaccatagtatcctctcatgtgagaccatagtatcctctcatgtgagaccatagtatcctctcataggagaccatagtatcctctcataggagaccatagtatcctctcatatgagaccatagtattctctcatatgagaccatagtatcctctc....................................................................................................................... ..................................................................................................atagtatcctctcgtatgagaccatagtatcctctcataggagaccatagtatcctctcataggagaccatagtatcctctcgtaggagaccatagtatcctctcgtatgagaccatagtatcctctcataggagaccatagtatcctctcgtaggagaccatagtatcctctc....................................................................................................................... HSP 5 e-value: 1.0E-58 bit: 228.0 Len: 163 Query Start:99 Query End:261 Subject Strand: NEGATIVE Subject Start: 297 Subject End: 459 ..................................................................................................atagtatcctctcatatgagaccatagtatcctctcatgtgagaccatagtatcctctcatgtgagaccatagtatcctctcataggagaccatagtatcctctcataggagaccatagtatcctctcatatgagaccatagtattctctcatatgagaccat.................................................................................................................................. ..................................................................................................atagtatcctctcataggagaccatagtatcctctcataggagaccatagtatcctctcgtaggagaccatagtatcctctcgtatgagaccatagtatcctctcataggagaccatagtatcctctcgtaggagaccatagtatcctctcataggagaccat.................................................................................................................................. Subject: NC_002950_PG0197_PG0198|hypothetical protein:hypothetical protein|NEGATIVE:POSITIVE|[236295,237021]|727 HSP 1 e-value: 8.0E-63 bit: 242.0 Len: 154 Query Start:140 Query End:293 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 154 ...........................................................................................................................................agaccatagtatcctctcatgtgagaccatagtatcctctcataggagaccatagtatcctctcataggagaccatagtatcctctcatatgagaccatagtattctctcatatgagaccatagtatcctctcgtgtgagaccatagtatcctc.................................................................................................. ...........................................................................................................................................agaccatagtatcctctcatgcgagaccatagtatcctctcataggagaccatagtatcctctcataggagactatagtatcctctcatgtgagaccatagtatcctctcatatgagaccatagtatcctctcataggggaccatagtatcctc.................................................................................................. HSP 2 e-value: 2.0E-60 bit: 234.0 Len: 154 Query Start:163 Query End:316 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 154 ..................................................................................................................................................................agaccatagtatcctctcataggagaccatagtatcctctcataggagaccatagtatcctctcatatgagaccatagtattctctcatatgagaccatagtatcctctcgtgtgagaccatagtatcctctcataggagaccatagtatcctc........................................................................... ..................................................................................................................................................................agaccatagtatcctctcatgcgagaccatagtatcctctcataggagaccatagtatcctctcataggagactatagtatcctctcatgtgagaccatagtatcctctcatatgagaccatagtatcctctcataggggaccatagtatcctc........................................................................... HSP 3 e-value: 2.0E-60 bit: 234.0 Len: 154 Query Start:117 Query End:270 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 154 ....................................................................................................................agaccatagtatcctctcatgtgagaccatagtatcctctcatgtgagaccatagtatcctctcataggagaccatagtatcctctcataggagaccatagtatcctctcatatgagaccatagtattctctcatatgagaccatagtatcctc......................................................................................................................... ....................................................................................................................agaccatagtatcctctcatgcgagaccatagtatcctctcataggagaccatagtatcctctcataggagactatagtatcctctcatgtgagaccatagtatcctctcatatgagaccatagtatcctctcataggggaccatagtatcctc......................................................................................................................... HSP 4 e-value: 3.0E-53 bit: 210.0 Len: 150 Query Start:186 Query End:335 Subject Strand: NEGATIVE Subject Start: 5 Subject End: 154 .........................................................................................................................................................................................agaccatagtatcctctcataggagaccatagtatcctctcatatgagaccatagtattctctcatatgagaccatagtatcctctcgtgtgagaccatagtatcctctcataggagaccatagtatcctctcatgtgagaccatagtat........................................................ .........................................................................................................................................................................................agaccatagtatcctctcatgcgagaccatagtatcctctcataggagaccatagtatcctctcataggagactatagtatcctctcatgtgagaccatagtatcctctcatatgagaccatagtatcctctcataggggaccatagtat........................................................ HSP 5 e-value: 7.0E-51 bit: 202.0 Len: 126 Query Start:99 Query End:224 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 126 ..................................................................................................atagtatcctctcatatgagaccatagtatcctctcatgtgagaccatagtatcctctcatgtgagaccatagtatcctctcataggagaccatagtatcctctcataggagaccatagtatcctc....................................................................................................................................................................... ..................................................................................................atagtatcctctcataggagaccatagtatcctctcataggagactatagtatcctctcatgtgagaccatagtatcctctcatatgagaccatagtatcctctcataggggaccatagtatcctc....................................................................................................................................................................... HSP 6 e-value: 6.0E-48 bit: 192.0 Len: 145 Query Start:99 Query End:243 Subject Strand: NEGATIVE Subject Start: 5 Subject End: 149 ..................................................................................................atagtatcctctcatatgagaccatagtatcctctcatgtgagaccatagtatcctctcatgtgagaccatagtatcctctcataggagaccatagtatcctctcataggagaccatagtatcctctcatatgagaccatagtat.................................................................................................................................................... ..................................................................................................atagtatcctctcatgcgagaccatagtatcctctcataggagaccatagtatcctctcataggagactatagtatcctctcatgtgagaccatagtatcctctcatatgagaccatagtatcctctcataggggaccatagtat.................................................................................................................................................... HSP 7 e-value: 2.0E-26 bit: 121.0 Len: 81 Query Start:98 Query End:178 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 81 .................................................................................................tatagtatcctctcatatgagaccatagtatcctctcatgtgagaccatagtatcctctcatgtgagaccatagtatcctc..................................................................................................................................................................................................................... .................................................................................................tatagtatcctctcatgtgagaccatagtatcctctcatatgagaccatagtatcctctcataggggaccatagtatcctc..................................................................................................................................................................................................................... Subject: NC_002950_PG0807_PG0809|NusB family protein:hypothetical protein|NEGATIVE:NEGATIVE|[864815,865153]|339 HSP 1 e-value: 5.0E-24 bit: 113.0 Len: 65 Query Start:113 Query End:177 Subject Strand: POSITIVE Subject Start: 139 Subject End: 203 ................................................................................................................tatgagaccatagtatcctctcatgtgagaccatagtatcctctcatgtgagaccatagtatcct...................................................................................................................................................................................................................... ................................................................................................................tatgagaccatagtatcctctcatgttagaccatagtatcctctcatatgagaccatagtatcct...................................................................................................................................................................................................................... HSP 2 e-value: 7.0E-23 bit: 109.0 Len: 63 Query Start:138 Query End:200 Subject Strand: POSITIVE Subject Start: 141 Subject End: 203 .........................................................................................................................................tgagaccatagtatcctctcatgtgagaccatagtatcctctcataggagaccatagtatcct............................................................................................................................................................................................... .........................................................................................................................................tgagaccatagtatcctctcatgttagaccatagtatcctctcatatgagaccatagtatcct............................................................................................................................................................................................... HSP 3 e-value: 1.0E-21 bit: 105.0 Len: 65 Query Start:251 Query End:315 Subject Strand: POSITIVE Subject Start: 139 Subject End: 203 ..........................................................................................................................................................................................................................................................tatgagaccatagtatcctctcgtgtgagaccatagtatcctctcataggagaccatagtatcct............................................................................ ..........................................................................................................................................................................................................................................................tatgagaccatagtatcctctcatgttagaccatagtatcctctcatatgagaccatagtatcct............................................................................ HSP 4 e-value: 7.0E-20 bit: 99.6 Len: 62 Query Start:208 Query End:269 Subject Strand: POSITIVE Subject Start: 142 Subject End: 203 ...............................................................................................................................................................................................................gagaccatagtatcctctcatatgagaccatagtattctctcatatgagaccatagtatcct.......................................................................................................................... ...............................................................................................................................................................................................................gagaccatagtatcctctcatgttagaccatagtatcctctcatatgagaccatagtatcct.......................................................................................................................... HSP 5 e-value: 4.0E-18 bit: 93.7 Len: 63 Query Start:161 Query End:223 Subject Strand: POSITIVE Subject Start: 141 Subject End: 203 ................................................................................................................................................................tgagaccatagtatcctctcataggagaccatagtatcctctcataggagaccatagtatcct........................................................................................................................................................................ ................................................................................................................................................................tgagaccatagtatcctctcatgttagaccatagtatcctctcatatgagaccatagtatcct........................................................................................................................................................................ HSP 6 e-value: 4.0E-18 bit: 93.7 Len: 59 Query Start:185 Query End:243 Subject Strand: POSITIVE Subject Start: 142 Subject End: 200 ........................................................................................................................................................................................gagaccatagtatcctctcataggagaccatagtatcctctcatatgagaccatagtat.................................................................................................................................................... ........................................................................................................................................................................................gagaccatagtatcctctcatgttagaccatagtatcctctcatatgagaccatagtat.................................................................................................................................................... HSP 7 e-value: 7.0E-17 bit: 89.7 Len: 65 Query Start:228 Query End:292 Subject Strand: POSITIVE Subject Start: 139 Subject End: 203 ...................................................................................................................................................................................................................................tatgagaccatagtattctctcatatgagaccatagtatcctctcgtgtgagaccatagtatcct................................................................................................... ...................................................................................................................................................................................................................................tatgagaccatagtatcctctcatgttagaccatagtatcctctcatatgagaccatagtatcct................................................................................................... HSP 8 e-value: 3.0E-16 bit: 87.7 Len: 60 Query Start:276 Query End:335 Subject Strand: POSITIVE Subject Start: 141 Subject End: 200 ...................................................................................................................................................................................................................................................................................tgagaccatagtatcctctcataggagaccatagtatcctctcatgtgagaccatagtat........................................................ ...................................................................................................................................................................................................................................................................................tgagaccatagtatcctctcatgttagaccatagtatcctctcatatgagaccatagtat........................................................ HSP 9 e-value: 3.0E-16 bit: 87.7 Len: 56 Query Start:99 Query End:154 Subject Strand: POSITIVE Subject Start: 148 Subject End: 203 ..................................................................................................atagtatcctctcatatgagaccatagtatcctctcatgtgagaccatagtatcct............................................................................................................................................................................................................................................. ..................................................................................................atagtatcctctcatgttagaccatagtatcctctcatatgagaccatagtatcct............................................................................................................................................................................................................................................. Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UUGUUCUGUCUUACUUCCAUGAAAACUUCCGAAGAGCCUCCUGACCGGCUCAUCAGGCUCCAAAUAUAGACAUUAUAAACAGGAUCUCCCAUAAGAGUAUAGUAUCCUCUCAUAUGAGACCAUAGUAUCCUCUCAUGUGAGACCAUAGUAUCCUCUCAUGUGAGACCAUAGUAUCCUCUCAUAGGAGACCAUAGUAUCCUCUCAUAGGAGACCAUAGUAUCCUCUCAUAUGAGACCAUAGUAUUCUCUCAUAUGAGACCAUAGUAUCCUCUCGUGUGAGACCAUAGUAUCCUCUCAUAGGAGACCAUAGUAUCCUCUCAUGUGAGACCAUAGUAUAUUCUCAUCAUUAUAUAAUAUCUACAUUUGCAAUACUAAGAACUGAAACGCCUGAA .................................(((((........))))).((((((..(((((.((((.((((((....((.....))...((((((((.(((..((((((((((((..(((.(((..((((.(((((((..(((.(((..(((((..(((((..(((.(((..(((((((.((((..(((.(((..(((((((.((((...........)))).)))))))..))).)))..)))).)))))))..))).)))..)))))..)))))..))).)))..))))))).))))..))).)))..))))))))))))..))).))))))))........)))))).)))).))))).....(........)....)))))). (-125.60) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UUCAGGCGUUUCAGUUCUUAGUAUUGCAAAUGUAGAUAUUAUAUAAUGAUGAGAAUAUACUAUGGUCUCACAUGAGAGGAUACUAUGGUCUCCUAUGAGAGGAUACUAUGGUCUCACACGAGAGGAUACUAUGGUCUCAUAUGAGAGAAUACUAUGGUCUCAUAUGAGAGGAUACUAUGGUCUCCUAUGAGAGGAUACUAUGGUCUCCUAUGAGAGGAUACUAUGGUCUCACAUGAGAGGAUACUAUGGUCUCACAUGAGAGGAUACUAUGGUCUCAUAUGAGAGGAUACUAUACUCUUAUGGGAGAUCCUGUUUAUAAUGUCUAUAUUUGGAGCCUGAUGAGCCGGUCAGGAGGCUCUUCGGAAGUUUUCAUGGAAGUAAGACAGAACAA .((((((....((((.......))))(((((((((((((((((.....((((((.((((.(((..(((((.((((((.((.((((((((.((((.....)))).)))))))).))...(....)..........)))))).)))))..))).)))).))))))..((.((((.((((((((.((((.....)))).))))))))((((((((((((.(((.(((..(((((.((((((..(((.(((..((((....))))..))).)))..)))))).)))))..))).))).)))))))))))).)))).)))))))))))))))))))..)))))).(((((........))))).......((((((......).)))))....... (-140.10) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 1013 60 11 151 102 NC_002950:PG1389|5end_DNA-binding_protein,_histone-like_family_1471328..1471558_NEGATIVE 944 210 161 224 175 NC_002950:PG0493|5end_hypothetical_protein_534900..535130_NEGATIVE 920 330 281 137 88 NC_002950:PG1426|5end_hypothetical_protein_1511310..1511540_NEGATIVE 918 180 131 125 76 NC_002950:PG0265|5end_hypothetical_protein_298551..298781_NEGATIVE 378 60 18 68 29 NC_002950:PG2077|5end_hypothetical_protein_2177391..2177621_NEGATIVE 370 61 26 219 178 NC_002950:PG0203|5end_hypothetical_protein_240211..240441_NEGATIVE 367 58 30 40 10 NC_002950:PG1418|5end_DNA_polymerase_III,_gamma_and_tau_subunits_1503064..1503294_POSITIVE 352 54 15 221 176 NC_002950:PG1490|5end_TraG_family_protein_1563415..1563645_POSITIVE 348 49 1 156 92 NC_002950:PG0888|5end_hypothetical_protein_949910..950140_POSITIVE 344 60 30 159 136 NC_002950:PG1964|5end_bacterial_sugar_transferase_2052910..2053140_POSITIVE 342 48 3 216 160 NC_002950:PG0149|5end_hypothetical_protein_172203..172433_NEGATIVE 341 269 223 179 128 NC_002950:PG0197|5end_hypothetical_protein_236204..236434_NEGATIVE 340 60 16 200 148 NC_002950:PG1057|5end_hypothetical_protein_1123419..1123649_POSITIVE 338 65 33 58 7 NC_002950:PG1630|5end_hypothetical_protein_1711772..1712002_POSITIVE 337 60 29 146 112 NC_002950:PG0746|5end_sensor_histidine_kinase_793903..794133_NEGATIVE 335 89 41 196 140 NC_002950:PG1853|5end_DNA_polymerase_III,_beta_subunit_1953119..1953349_NEGATIVE 333 59 14 134 85 NC_002950:PG0750|5end_glycosyl_transferase,_group_2_family_protein_796692..796922_NEGATIVE 332 210 162 96 52 NC_002950:PG1831|5end_ATP-dependent_DNA_helicase_RecQ_1925422..1925652_NEGATIVE 326 52 11 169 127 NC_002950:PG0882|5end_hypothetical_protein_944195..944425_POSITIVE 324 73 31 163 115 NC_002950:PG1584|5end_batC_protein_1661331..1661561_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 954 190 141 102 53 NC_002950:PG0494|3end_hypothetical_protein_535094..535244_NEGATIVE 337 60 29 149 115 NC_002950:PG0747|3end_sigma-54_dependent_DNA-binding_response_regulator_793900..794050_NEGATIVE 328 74 33 121 87 NC_002950:PG0198|3end_hypothetical_protein_237501..237651_POSITIVE 327 303 262 45 10 NC_002950:PG1760|3end_ABC_transporter,_ATP-binding_protein_1847216..1847366_POSITIVE 326 52 11 59 17 NC_002950:PG0881|3end_recombinase_A_944165..944315_POSITIVE 322 77 34 55 4 NC_002950:PG2078|3end_hypothetical_protein_2177428..2177578_NEGATIVE 304 49 1 135 91 NC_002950:PG0377|3end_30S_ribosomal_protein_S2_407845..407995_POSITIVE 294 58 14 43 2 NC_002950:PG1706|3end_hypothetical_protein_1793849..1793999_NEGATIVE 292 164 125 82 36 NC_002950:PG0054|3end_single-stranded-DNA-specific_exonuclease_RecJ_66899..67049_POSITIVE 291 129 81 50 2 NC_002950:PG1360|3end_phosphoribosylamine--glycine_ligase_1438618..1438768_NEGATIVE 287 69 28 127 73 NC_002950:PG0745|3end_lactoylglutathione_lyase,_putative_791982..792132_NEGATIVE 287 56 15 147 94 NC_002950:PG0094|3end_outer_membrane_efflux_protein,_putative_109688..109838_NEGATIVE 287 74 33 61 5 NC_002950:PG0082|3end_hypothetical_protein_97026..97176_POSITIVE 287 248 201 63 19 NC_002950:PG0068|3end_hypothetical_protein_82079..82229_POSITIVE 286 48 5 138 86 NC_002950:PG0180|3end_lipoprotein,_putative_204475..204625_POSITIVE 285 61 25 54 8 NC_002950:PG1459|3end_hypothetical_protein_1539632..1539782_NEGATIVE 284 69 28 54 5 NC_002950:PG1382|3end_hypothetical_protein_1462550..1462700_POSITIVE 283 62 29 151 119 NC_002950:PG0361|3end_hypothetical_protein_395481..395631_POSITIVE 283 48 3 90 31 NC_002950:PG0204|3end_hypothetical_protein_240262..240412_NEGATIVE 282 58 15 96 39 NC_002950:PG0799|3end_hypothetical_protein_854599..854749_POSITIVE