Origin IGS: gtgatctcttgttttcggtcgcaaatatagtattcctccgattaatgctaaatatccggaagcaatttgtcagctgcacacattccggcaccaccggcctgacatgaactcgatgtaagcgaaatatcgaagtttctgtttgtcagagcattttttcagatcgaaaaatttcaacttgaaagccctatagcagcaaaagccattcgtatactgtctgttatccccatgaactctcactcgcccaaacaattagggaaaccatgcaaagagaaaaagactccttgttttgtatcatcctgtatggggaaaaccacgtgccaaaaaaagttttcaacaatgaagatgagtttagaatcattccaaataagcacgtaaatggaaacggattttgaagacaaaaaagtgagaaacgaactttttcagatcgaaacatgacttttgagagataagaaaacgatctgtatataaatcattttcgatttgtatatagatcgtttttgatctatatataaactgatttcaataaatatacaaatcaaattctatttatatataaaatgcatggcataaaaacaatttaaggaggtagaatagataaggaacgcaccaaattcttcaacgaatttggtgcgtgccttatctgtgtttggactatcggtgagggttattccggcttatacctcataatcatgatagaaatctatcgactccttggaacaagagatatatgaatacacaaaaacagataggtcaaaacggctatagaggtggaggaattcagcgcacatattcttatcattcagttatttagcaagcaattccattcaatcgaaaagcattttcaatagcgatcattagtatcgagcaaaagtgttttatcagctgcaaatataacaaaaagacttgagtatgaaaattcatagttcccgaacaaatattcgtcgatattgtcaatgatcaagacagaaaaatttttcacttagatattcattcttcattta .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 taaatgaagaatgaatatctaagtgaaaaatttttctgtcttgatcattgacaatatcgacgaatatttgttcgggaactatgaattttcatactcaagtctttttgttatatttgcagctgataaaacacttttgctcgatactaatgatcgctattgaaaatgcttttcgattgaatggaattgcttgctaaataactgaatgataagaatatgtgcgctgaattcctccacctctatagccgttttgacctatctgtttttgtgtattcatatatctcttgttccaaggagtcgatagatttctatcatgattatgaggtataagccggaataaccctcaccgatagtccaaacacagataaggcacgcaccaaattcgttgaagaatttggtgcgttccttatctattctacctccttaaattgtttttatgccatgcattttatatataaatagaatttgatttgtatatttattgaaatcagtttatatatagatcaaaaacgatctatatacaaatcgaaaatgatttatatacagatcgttttcttatctctcaaaagtcatgtttcgatctgaaaaagttcgtttctcacttttttgtcttcaaaatccgtttccatttacgtgcttatttggaatgattctaaactcatcttcattgttgaaaactttttttggcacgtggttttccccatacaggatgatacaaaacaaggagtctttttctctttgcatggtttccctaattgtttgggcgagtgagagttcatggggataacagacagtatacgaatggcttttgctgctatagggctttcaagttgaaatttttcgatctgaaaaaatgctctgacaaacagaaacttcgatatttcgcttacatcgagttcatgtcaggccggtggtgccggaatgtgtgcagctgacaaattgcttccggatatttagcattaatcggaggaatactatatttgcgaccgaaaacaagagatcac Mask Tandem Repeat Region ================================================ gtgatctcttgttttcggtcgcaaatatagtattcctccgattaatgctaaatatccggaagcaatttgtcagctgcacacattccggcaccaccggcctgacatgaactcgatgtaagcgaaatatcgaagtttctgtttgtcagagcattttttcagatcgaaaaatttcaacttgaaagccctatagcagcaaaagccattcgtatactgtctgttatccccatgaactctcactcgcccaaacaattagggaaaccatgcaaagagaaaaagactccttgttttgtatcatcctgtatggggaaaaccacgtgccaaaaaaagttttcaacaatgaagatgagtttagaatcattccaaataagcacgtaaatggaaacggattttgaagacaaaaaagtgagaaacgaactttttcagatcgaaacatgacttttgagagataagaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctgatttcaataaatatacaaatcaaattctatttatatataaaatgcatggcataaaaacaatttaaggaggtagaatagataaggaacgcaccaaattcttcaacgaatttggtgcgtgccttatctgtgtttggactatcggtgagggttattccggcttatacctcataatcatgatagaaatctatcgactccttggaacaagagatatatgaatacacaaaaacagataggtcaaaacggctatagaggtggaggaattcagcgcacatattcttatcattcagttatttagcaagcaattccattcaatcgaaaagcattttcaatagcgatcattagtatcgagcaaaagtgttttatcagctgcaaatataacaaaaagacttgagtatgaaaattcatagttcccgaacaaatattcgtcgatattgtcaatgatcaagacagaaaaatttttcacttagatattcattcttcattta Find is-nt database================================================ Query_seq: PG1375:PG1378|PG1375:PG1378:hypothetical protein:A/G-specific adenine glycosylase:-><-:1456804..1457804 1001 gtgatctcttgttttcggtcgcaaatatagtattcctccgattaatgctaaatatccggaagcaatttgtcagctgcacacattccggcaccaccggcctgacatgaactcgatgtaagcgaaatatcgaagtttctgtttgtcagagcattttttcagatcgaaaaatttcaacttgaaagccctatagcagcaaaagccattcgtatactgtctgttatccccatgaactctcactcgcccaaacaattagggaaaccatgcaaagagaaaaagactccttgttttgtatcatcctgtatggggaaaaccacgtgccaaaaaaagttttcaacaatgaagatgagtttagaatcattccaaataagcacgtaaatggaaacggattttgaagacaaaaaagtgagaaacgaactttttcagatcgaaacatgacttttgagagataagaaaacgatctgtatataaatcattttcgatttgtatatagatcgtttttgatctatatataaactgatttcaataaatatacaaatcaaattctatttatatataaaatgcatggcataaaaacaatttaaggaggtagaatagataaggaacgcaccaaattcttcaacgaatttggtgcgtgccttatctgtgtttggactatcggtgagggttattccggcttatacctcataatcatgatagaaatctatcgactccttggaacaagagatatatgaatacacaaaaacagataggtcaaaacggctatagaggtggaggaattcagcgcacatattcttatcattcagttatttagcaagcaattccattcaatcgaaaagcattttcaatagcgatcattagtatcgagcaaaagtgttttatcagctgcaaatataacaaaaagacttgagtatgaaaattcatagttcccgaacaaatattcgtcgatattgtcaatgatcaagacagaaaaatttttcacttagatattcattcttcattta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PG1375:PG1378|PG1375:PG1378:hypothetical protein:A/G-specific adenine glycosylase:-><-:1456804..1457804 1001 gtgatctcttgttttcggtcgcaaatatagtattcctccgattaatgctaaatatccggaagcaatttgtcagctgcacacattccggcaccaccggcctgacatgaactcgatgtaagcgaaatatcgaagtttctgtttgtcagagcattttttcagatcgaaaaatttcaacttgaaagccctatagcagcaaaagccattcgtatactgtctgttatccccatgaactctcactcgcccaaacaattagggaaaccatgcaaagagaaaaagactccttgttttgtatcatcctgtatggggaaaaccacgtgccaaaaaaagttttcaacaatgaagatgagtttagaatcattccaaataagcacgtaaatggaaacggattttgaagacaaaaaagtgagaaacgaactttttcagatcgaaacatgacttttgagagataagaaaacgatctgtatataaatcattttcgatttgtatatagatcgtttttgatctatatataaactgatttcaataaatatacaaatcaaattctatttatatataaaatgcatggcataaaaacaatttaaggaggtagaatagataaggaacgcaccaaattcttcaacgaatttggtgcgtgccttatctgtgtttggactatcggtgagggttattccggcttatacctcataatcatgatagaaatctatcgactccttggaacaagagatatatgaatacacaaaaacagataggtcaaaacggctatagaggtggaggaattcagcgcacatattcttatcattcagttatttagcaagcaattccattcaatcgaaaagcattttcaatagcgatcattagtatcgagcaaaagtgttttatcagctgcaaatataacaaaaagacttgagtatgaaaattcatagttcccgaacaaatattcgtcgatattgtcaatgatcaagacagaaaaatttttcacttagatattcattcttcattta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PG1375:PG1378|PG1375:PG1378:hypothetical protein:A/G-specific adenine glycosylase:-><-:1456804..1457804 1001 gtgatctcttgttttcggtcgcaaatatagtattcctccgattaatgctaaatatccggaagcaatttgtcagctgcacacattccggcaccaccggcctgacatgaactcgatgtaagcgaaatatcgaagtttctgtttgtcagagcattttttcagatcgaaaaatttcaacttgaaagccctatagcagcaaaagccattcgtatactgtctgttatccccatgaactctcactcgcccaaacaattagggaaaccatgcaaagagaaaaagactccttgttttgtatcatcctgtatggggaaaaccacgtgccaaaaaaagttttcaacaatgaagatgagtttagaatcattccaaataagcacgtaaatggaaacggattttgaagacaaaaaagtgagaaacgaactttttcagatcgaaacatgacttttgagagataagaaaacgatctgtatataaatcattttcgatttgtatatagatcgtttttgatctatatataaactgatttcaataaatatacaaatcaaattctatttatatataaaatgcatggcataaaaacaatttaaggaggtagaatagataaggaacgcaccaaattcttcaacgaatttggtgcgtgccttatctgtgtttggactatcggtgagggttattccggcttatacctcataatcatgatagaaatctatcgactccttggaacaagagatatatgaatacacaaaaacagataggtcaaaacggctatagaggtggaggaattcagcgcacatattcttatcattcagttatttagcaagcaattccattcaatcgaaaagcattttcaatagcgatcattagtatcgagcaaaagtgttttatcagctgcaaatataacaaaaagacttgagtatgaaaattcatagttcccgaacaaatattcgtcgatattgtcaatgatcaagacagaaaaatttttcacttagatattcattcttcattta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 gtgatctcttgttttcggtcgcaaatatagtattcctccgattaatgctaaatatccggaagcaatttgtcagctgcacacattccggcaccaccggcctgacatgaactcgatgtaagcgaaatatcgaagtttctgtttgtcagagcattttttcagatcgaaaaatttcaacttgaaagccctatagcagcaaaagccattcgtatactgtctgttatccccatgaactctcactcgcccaaacaattagggaaaccatgcaaagagaaaaagactccttgttttgtatcatcctgtatggggaaaaccacgtgccaaaaaaagttttcaacaatgaagatgagtttagaatcattccaaataagcacgtaaatggaaacggattttgaagacaaaaaagtgagaaacgaactttttcagatcgaaacatgacttttgagagataagaaaacgatctgtatataaatcattttcgatttgtatatagatcgtttttgatctatatataaactgatttcaataaatatacaaatcaaattctatttatatataaaatgcatggcataaaaacaatttaaggaggtagaatagataaggaacgcaccaaattcttcaacgaatttggtgcgtgccttatctgtgtttggactatcggtgagggttattccggcttatacctcataatcatgatagaaatctatcgactccttggaacaagagatatatgaatacacaaaaacagataggtcaaaacggctatagaggtggaggaattcagcgcacatattcttatcattcagttatttagcaagcaattccattcaatcgaaaagcattttcaatagcgatcattagtatcgagcaaaagtgttttatcagctgcaaatataacaaaaagacttgagtatgaaaattcatagttcccgaacaaatattcgtcgatattgtcaatgatcaagacagaaaaatttttcacttagatattcattcttcattta Predict ORF larger than 30AA ================================================ Protein_Len: 32 Strand: + Start: 9 End: 104 ........ M F S V A N I V F L R L M L N I R K Q F V S C T H S G T T G L T ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 60 Strand: + Start: 124 End: 372 ........................................................................................................................... M S K F L F V R A F F Q I E K F Q L E S P I A A K A I R I L S V I P M N S H S P K Q L G K P C K E K K T P C F V S S C M ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 47 Strand: + Start: 249 End: 389 ........................................................................................................................................................................................................................................................ M R E T M Q R E K D S L F C I I L Y G E N H V P K K V F N N E D E F R I I P N K H V N G N G F .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 30 Strand: + Start: 595 End: 684 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M R N A P N S S T N L V R A L S V F G L S V R V I P A Y T S ............................................................................................................................................................................................................................................................................................................................. Protein_Len: 46 Strand: + Start: 591 End: 728 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M D K E R T K F F N E F G A C L I C V W T I G E G Y S G L Y L I I M I E I Y R L L G T R D I ................................................................................................................................................................................................................................................................................. Protein_Len: 44 Strand: + Start: 677 End: 808 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M P H N H D R N L S T P W N K R Y M N T Q K Q I G Q N G Y R G G G I Q R T Y S Y H S V I ................................................................................................................................................................................................. Protein_Len: 45 Strand: - Start: 845 End: 979 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Y R D N T D L L L T K D A A F I V F L S S Y S F E Y N G F L Y E D I N D I I L V S F N K M ...................... Protein_Len: 48 Strand: - Start: 811 End: 954 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... C A I G N L R F A N E I A I M L I S C F H K I L Q L Y L L F V Q T H F N M T G S C I N T S I T M ............................................... Protein_Len: 32 Strand: - Start: 704 End: 799 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... R S R P V L S I H I C L F L Y T L V A I S T S S N L A C I R I M .......................................................................................................................................................................................................... Protein_Len: 42 Strand: - Start: 678 End: 803 ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... V E Y D H Y F D I S E K S C S I Y S Y V F V S L D F R S Y L H L F E A C M N K D N M ...................................................................................................................................................................................................... Protein_Len: 41 Strand: - Start: 546 End: 668 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. K Y I F H M A Y F C N L S T S Y I L F A G F E E V F K T R A K D T N P S D T L T M ............................................................................................................................................................................................................................................................................................................................................. Protein_Len: 39 Strand: - Start: 423 End: 539 ...................................................................................................................................................................................................................................................................................................................................................................................................................................... I S V H S K L S L F V I Q I Y I M K S K Y I S R K Q D I Y L S I E I F I C I M .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 51 Strand: - Start: 358 End: 510 ..................................................................................................................................................................................................................................................................................................................................................................... E L Y A R L H F R I K F V F F H S V F K K L D F C S K Q S I L F R D T Y L D N E I Q I Y I T K S R Y M ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 54 Strand: - Start: 237 End: 398 ............................................................................................................................................................................................................................................ E G L C N P F G H L S F F V G Q K T D D Q I P F V V H W F F N E V I F I L K S D N W I L V Y I S V S K S S M ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 221 End: 466 ............................................................................................................................................................................................................................ Q I M R Y P S F W T G F F T K L L S S S N L I M G F L C T F P F P N Q L C F L S F R V K E S R F M V K S L Y S F S R Y M ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 59 Strand: - Start: 73 End: 249 ........................................................................ S C V N R C W R G S M F E I Y A F Y R L K Q K D S C K K L D F F K L K F A R Y C C F G N T Y Q R N D G H V R V R G F M ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 32 Strand: - Start: 51 End: 146 .................................................. I D P L L K D A A C M G A G G A Q C S S S T L S I D F N R N T M ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 42 Strand: - Start: 2 End: 127 . S R K N E T A F I T N R R N I S F I R F C N T L Q V C E P V V P R V H V R H L R F M .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... gtgatctcttgttttcggtcgcaaatatagtattcctccgattaatgctaaatatccggaagcaatttgtcagctgcacacattccggcaccaccggcctgacatgaactcgatgtaagcgaaatatcgaagtttctgtttgtcagagcattttttcagatcgaaaaatttcaacttgaaagccctatagcagcaaaagccattcgtatactgtctgttatccccatgaactctcactcgcccaaacaattagggaaaccatgcaaagagaaaaagactccttgttttgtatcatcctgtatggggaaaaccacgtgccaaaaaaagttttcaacaatgaagatgagtttagaatcattccaaataagcacgtaaatggaaacggattttgaagacaaaaaagtgagaaacgaactttttcagatcgaaacatgacttttgagagataagaaaacgatctgtatataaatcattttcgatttgtatatagatcgtttttgatctatatataaactgatttcaataaatatacaaatcaaattctatttatatataaaatgcatggcataaaaacaatttaaggaggtagaatagataaggaacgcaccaaattcttcaacgaatttggtgcgtgccttatctgtgtttggactatcggtgagggttattccggcttatacctcataatcatgatagaaatctatcgactccttggaacaagagatatatgaatacacaaaaacagataggtcaaaacggctatagaggtggaggaattcagcgcacatattcttatcattcagttatttagcaagcaattccattcaatcgaaaagcattttcaatagcgatcattagtatcgagcaaaagtgttttatcagctgcaaatataacaaaaagacttgagtatgaaaattcatagttcccgaacaaatattcgtcgatattgtcaatgatcaagacagaaaaatttttcacttagatattcattcttcattta Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: - Score: 83 Start: 888 End: 917 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCATACTCAAGTCTTTTTGTTATATT.................................................................................... PromScan Matrix: RpoD-17 Strand: - Score: 81 Start: 354 End: 383 .................................................................................................................................................................................................................................................................................................................................................................GTTTCCATTTACGTGCTTATTTGGAATGAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ gtgatctcttgttttcggtcgcaaatatagtattcctccgattaatgctaaatatccggaagcaatttgtcagctgcacacattccggcaccaccggcctgacatgaactcgatgtaagcgaaatatcgaagtttctgtttgtcagagcattttttcagatcgaaaaatttcaacttgaaagccctatagcagcaaaagccattcgtatactgtctgttatccccatgaactctcactcgcccaaacaattagggaaaccatgcaaagagaaaaagactccttgttttgtatcatcctgtatggggaaaaccacgtgccaaaaaaagttttcaacaatgaagatgagtttagaatcattccaaataagcacgtaaatggaaacggattttgaagacaaaaaagtgagaaacgaactttttcagatcgaaacatgacttttgagagataagaaaacgatctgtatataaatcattttcgatttgtatatagatcgtttttgatctatatataaactgatttcaataaatatacaaatcaaattctatttatatataaaatgcatggcataaaaacaatttaaggaggtagaatagataaggaacgcaccaaattcttcaacgaatttggtgcgtgccttatctgtgtttggactatcggtgagggttattccggcttatacctcataatcatgatagaaatctatcgactccttggaacaagagatatatgaatacacaaaaacagataggtcaaaacggctatagaggtggaggaattcagcgcacatattcttatcattcagttatttagcaagcaattccattcaatcgaaaagcattttcaatagcgatcattagtatcgagcaaaagtgttttatcagctgcaaatataacaaaaagacttgagtatgaaaattcatagttcccgaacaaatattcgtcgatattgtcaatgatcaagacagaaaaatttttcacttagatattcattcttcattta Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 72 HP_score: -4.9 Tail_Score: -4.70659 Start: 169 End: 181 Full_Region: ttgctgctatagggc tttca agt tgaaa tttttcgatctgaaa ........................................................................................................................................................................tttcaagttgaaa.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 77 HP_score: -8.9 Tail_Score: -3.58905 Start: 450 End: 499 Full_Region: gtttatatatagatc aaaaacgatctatatacaaatcg aaaa tgatttatatacagatcgttttc ttatctctcaaaagt .................................................................................................................................................................................................................................................................................................................................................................................................................................................................aaaaacgatctatatacaaatcgaaaatgatttatatacagatcgttttc...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 95 HP_score: -8.8 Tail_Score: -4.87592 Start: 455 End: 494 Full_Region: tatatagatcaaaaa cgatctatatacaaatcg aaaa tgatttatatacagatcg ttttcttatctctca ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................cgatctatatacaaatcgaaaatgatttatatacagatcg........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 100 HP_score: -12.5 Tail_Score: -4.86133 Start: 455 End: 494 Full_Region: TGAGAGATAAGAAAA CGATCTGTATATAAATC ATTTTC GATTTGTATATAGATCG TTTTTGATCTATATA ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATCTGTATATAAATCATTTTCGATTTGTATATAGATCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 73 HP_score: -8.3 Tail_Score: -3.67792 Start: 476 End: 517 Full_Region: GTATATAAATCATTT TCGATTTGTATATAGATCG TTTT TGATCTATATATAAACTGA TTTCAATAAATATAC ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGATTTGTATATAGATCGTTTTTGATCTATATATAAACTGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 100 HP_score: -20.1 Tail_Score: -3.64103 Start: 590 End: 645 Full_Region: AATTTAAGGAGGTAG AATAGATAAGGAACGCACCAAATTC TTCAAC GAATTTGGTGCGTGCCTTATCTGTG TTTGGACTATCGGTG .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAGATAAGGAACGCACCAAATTCTTCAACGAATTTGGTGCGTGCCTTATCTGTG.................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 100 HP_score: -20.5 Tail_Score: -3.39595 Start: 592 End: 643 Full_Region: ccgatagtccaaaca cagataaggcacgcaccaaattc gttgaa gaatttggtgcgttccttatcta ttctacctccttaaa ...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cagataaggcacgcaccaaattcgttgaagaatttggtgcgttccttatcta...................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 100 HP_score: -22.7 Tail_Score: -3.39844 Start: 592 End: 643 Full_Region: TTTAAGGAGGTAGAA TAGATAAGGAACGCACCAAATTC TTCAAC GAATTTGGTGCGTGCCTTATCTG TGTTTGGACTATCGG ...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGATAAGGAACGCACCAAATTCTTCAACGAATTTGGTGCGTGCCTTATCTG...................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 100 HP_score: -23.1 Tail_Score: -3.2661 Start: 594 End: 641 Full_Region: gatagtccaaacaca gataaggcacgcaccaaattc gttgaa gaatttggtgcgttccttatc tattctacctcctta .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gataaggcacgcaccaaattcgttgaagaatttggtgcgttccttatc........................................................................................................................................................................................................................................................................................................................................................................ TransTerm Strand: + Conf: 100 HP_score: -23.1 Tail_Score: -3.26745 Start: 594 End: 641 Full_Region: TAAGGAGGTAGAATA GATAAGGAACGCACCAAATTC TTCAAC GAATTTGGTGCGTGCCTTATC TGTGTTTGGACTATC .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAAGGAACGCACCAAATTCTTCAACGAATTTGGTGCGTGCCTTATC........................................................................................................................................................................................................................................................................................................................................................................ TransTerm Strand: - Conf: 100 HP_score: -17.2 Tail_Score: -3.7319 Start: 599 End: 636 Full_Region: tccaaacacagataa ggcacgcaccaaattc gttgaa gaatttggtgcgttcc ttatctattctacct ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ggcacgcaccaaattcgttgaagaatttggtgcgttcc............................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: + Conf: 100 HP_score: -17.2 Tail_Score: -3.73008 Start: 599 End: 636 Full_Region: AGGTAGAATAGATAA GGAACGCACCAAATTC TTCAAC GAATTTGGTGCGTGCC TTATCTGTGTTTGGA ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAACGCACCAAATTCTTCAACGAATTTGGTGCGTGCC............................................................................................................................................................................................................................................................................................................................................................................. Find igs database================================================ Query_seq: PG1375:PG1378|PG1375:PG1378:hypothetical protein:A/G-specific adenine glycosylase:-><-:1456804..1457804 1001 gtgatctcttgttttcggtcgcaaatatagtattcctccgattaatgctaaatatccggaagcaatttgtcagctgcacacattccggcaccaccggcctgacatgaactcgatgtaagcgaaatatcgaagtttctgtttgtcagagcattttttcagatcgaaaaatttcaacttgaaagccctatagcagcaaaagccattcgtatactgtctgttatccccatgaactctcactcgcccaaacaattagggaaaccatgcaaagagaaaaagactccttgttttgtatcatcctgtatggggaaaaccacgtgccaaaaaaagttttcaacaatgaagatgagtttagaatcattccaaataagcacgtaaatggaaacggattttgaagacaaaaaagtgagaaacgaactttttcagatcgaaacatgacttttgagagataagaaaacgatctgtatataaatcattttcgatttgtatatagatcgtttttgatctatatataaactgatttcaataaatatacaaatcaaattctatttatatataaaatgcatggcataaaaacaatttaaggaggtagaatagataaggaacgcaccaaattcttcaacgaatttggtgcgtgccttatctgtgtttggactatcggtgagggttattccggcttatacctcataatcatgatagaaatctatcgactccttggaacaagagatatatgaatacacaaaaacagataggtcaaaacggctatagaggtggaggaattcagcgcacatattcttatcattcagttatttagcaagcaattccattcaatcgaaaagcattttcaatagcgatcattagtatcgagcaaaagtgttttatcagctgcaaatataacaaaaagacttgagtatgaaaattcatagttcccgaacaaatattcgtcgatattgtcaatgatcaagacagaaaaatttttcacttagatattcattcttcattta Intra-Species Hit: Count: 11 Min: 1 Max: 1001 Len: 1001 Subject: NC_002950_PG1375_PG1378|hypothetical protein:A/G-specific adenine glycosylase|POSITIVE:NEGATIVE|[1456804,1457804]|1001 HSP 1 e-value: 0.0 bit: 1943.0 Len: 1001 Query Start:1 Query End:1001 Subject Strand: POSITIVE Subject Start: 1 Subject End: 1001 gtgatctcttgttttcggtcgcaaatatagtattcctccgattaatgctaaatatccggaagcaatttgtcagctgcacacattccggcaccaccggcctgacatgaactcgatgtaagcgaaatatcgaagtttctgtttgtcagagcattttttcagatcgaaaaatttcaacttgaaagccctatagcagcaaaagccattcgtatactgtctgttatccccatgaactctcactcgcccaaacaattagggaaaccatgcaaagagaaaaagactccttgttttgtatcatcctgtatggggaaaaccacgtgccnnnnnnngttttcaacaatgaagatgagtttagaatcattccaaataagcacgtaaatggaaacggattttgaagacaaaaaagtgagaaacgaactttttcagatcgaaacatgacttttgagagataagaaaacgatctgtatataaatcattttcgatttgtatatagatcgtttttgatctatatataaactgatttcaataaatatacaaatcaaattctatttatatataaaatgcatggcataaaaacaatttaaggaggtagaatagataaggaacgcaccaaattcttcaacgaatttggtgcgtgccttatctgtgtttggactatcggtgagggttattccggcttatacctcataatcatgatagaaatctatcgactccttggaacaagagatatatgaatacacaaaaacagataggtcaaaacggctatagaggtggaggaattcagcgcacatattcttatcattcagttatttagcaagcaattccattcaatcgaaaagcattttcaatagcgatcattagtatcgagcaaaagtgttttatcagctgcaaatataacaaaaagacttgagtatgaaaattcatagttcccgaacaaatattcgtcgatattgtcaatgatcaagacagaaaaatttttcacttagatattcattcttcattta gtgatctcttgttttcggtcgcaaatatagtattcctccgattaatgctaaatatccggaagcaatttgtcagctgcacacattccggcaccaccggcctgacatgaactcgatgtaagcgaaatatcgaagtttctgtttgtcagagcattttttcagatcgaaaaatttcaacttgaaagccctatagcagcaaaagccattcgtatactgtctgttatccccatgaactctcactcgcccaaacaattagggaaaccatgcaaagagaaaaagactccttgttttgtatcatcctgtatggggaaaaccacgtgccaaaaaaagttttcaacaatgaagatgagtttagaatcattccaaataagcacgtaaatggaaacggattttgaagacaaaaaagtgagaaacgaactttttcagatcgaaacatgacttttgagagataagaaaacgatctgtatataaatcattttcgatttgtatatagatcgtttttgatctatatataaactgatttcaataaatatacaaatcaaattctatttatatataaaatgcatggcataaaaacaatttaaggaggtagaatagataaggaacgcaccaaattcttcaacgaatttggtgcgtgccttatctgtgtttggactatcggtgagggttattccggcttatacctcataatcatgatagaaatctatcgactccttggaacaagagatatatgaatacacaaaaacagataggtcaaaacggctatagaggtggaggaattcagcgcacatattcttatcattcagttatttagcaagcaattccattcaatcgaaaagcattttcaatagcgatcattagtatcgagcaaaagtgttttatcagctgcaaatataacaaaaagacttgagtatgaaaattcatagttcccgaacaaatattcgtcgatattgtcaatgatcaagacagaaaaatttttcacttagatattcattcttcattta Subject: NC_002950_PG1889_PG1890|hypothetical protein:lipoprotein, putative|POSITIVE:POSITIVE|[1987151,1987704]|554 HSP 1 e-value: 1.0E-14 bit: 83.8 Len: 78 Query Start:454 Query End:531 Subject Strand: NEGATIVE Subject Start: 161 Subject End: 238 .....................................................................................................................................................................................................................................................................................................................................................................................................................................................................acgatctgtatataaatcattttcgatttgtatatagatcgtttttgatctatatataaactgatttcaataaatata...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .....................................................................................................................................................................................................................................................................................................................................................................................................................................................................acgatctgtatataaaccattttcaatttatatatagatcgttttcaatttatatataaatcgttttcaataaatata...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 1.0E-8 bit: 63.9 Len: 44 Query Start:327 Query End:370 Subject Strand: NEGATIVE Subject Start: 324 Subject End: 367 ......................................................................................................................................................................................................................................................................................................................................gttttcaacaatgaagatgagtttagaatcattccaaataagca....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ......................................................................................................................................................................................................................................................................................................................................gttttcaacaatgaagacgagcttagaatcattctaaataagca....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: NC_002950_PG0965_PG0968|phosphatidylserine decarboxylase:Mrr restriction system protein|NEGATIVE:POSITIVE|[1025867,1026967]|1101 HSP 1 e-value: 4.0E-11 bit: 71.9 Len: 139 Query Start:327 Query End:465 Subject Strand: NEGATIVE Subject Start: 677 Subject End: 816 ......................................................................................................................................................................................................................................................................................................................................gttttcaacaatgaagatgagtttagaatcattccaaataagcacgtaaatggaaacggattttgaagacaaaaaagtgag-aaacgaactttttcagatcgaaacatgacttttgagagataagaaaacgatctgtata........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ ......................................................................................................................................................................................................................................................................................................................................gttttcaacaacgaagatgagtttggaatcattccaaataagaacctaaatacatctcaattttgaagtcaaaaaggtgagaaaaggatgtttttcaggtagaaacatgacttttagaagagaagataacgatctatata........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Subject: NC_002950_PG2083_PG2085|hypothetical protein:tryptophanyl-tRNA synthetase|NEGATIVE:POSITIVE|[2184598,2185671]|1074 HSP 1 e-value: 7.0E-10 bit: 67.9 Len: 42 Query Start:327 Query End:368 Subject Strand: NEGATIVE Subject Start: 692 Subject End: 733 ......................................................................................................................................................................................................................................................................................................................................gttttcaacaatgaagatgagtttagaatcattccaaataag......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ......................................................................................................................................................................................................................................................................................................................................gttttcaacaacgaagctgagtttagaatcattccaaataag......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 1.0E-8 bit: 63.9 Len: 52 Query Start:462 Query End:513 Subject Strand: NEGATIVE Subject Start: 546 Subject End: 597 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................tatataaatcattttcgatttgtatatagatcgtttttgatctatatataaa........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................tatataaaccgttttcgatttgtatatagatcgtttctaatttatatataaa........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Subject: NC_002950_PG1694_PG1695|hypothetical protein:hypothetical protein|NEGATIVE:POSITIVE|[1779101,1779579]|479 HSP 1 e-value: 7.0E-10 bit: 67.9 Len: 54 Query Start:484 Query End:537 Subject Strand: POSITIVE Subject Start: 318 Subject End: 371 ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tatatagatcgtttttgatctatatataaactgatttcaataaatatacaaatc................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tatataaaacgttttcgatttatatataaactgatttcaataaatatataaatc................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ HSP 2 e-value: 2.0E-7 bit: 60.0 Len: 42 Query Start:328 Query End:369 Subject Strand: POSITIVE Subject Start: 183 Subject End: 224 .......................................................................................................................................................................................................................................................................................................................................ttttcaacaatgaagatgagtttagaatcattccaaataagc........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ .......................................................................................................................................................................................................................................................................................................................................ttttcaacaacgaagaagaatttagaatcattccaaataagc........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Subject: NC_002950_PG1167_PG1169|hypothetical protein:hypothetical protein|POSITIVE:NEGATIVE|[1248705,1249172]|468 HSP 1 e-value: 7.0E-10 bit: 67.9 Len: 105 Query Start:409 Query End:513 Subject Strand: POSITIVE Subject Start: 18 Subject End: 122 ........................................................................................................................................................................................................................................................................................................................................................................................................................aacgaactttttcagatcgaaacatgacttttgaga-gataagaaaacgatctgtatataaatcattttcgatttgtatatagatcgtttttgatctatatataaa........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ ........................................................................................................................................................................................................................................................................................................................................................................................................................aacgagctttttcagttcaaaacatg-cttttcagaagagaggataacgatctgtatataaaccgttttcgatctatatatagatcgttttcgttttatatataaa........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Subject: NC_002950_PG1411_PG1414|potassium uptake protein TrkA, putative:hypothetical protein|NEGATIVE:POSITIVE|[1495257,1497148]|1892 HSP 1 e-value: 1.0E-8 bit: 63.9 Len: 187 Query Start:327 Query End:513 Subject Strand: POSITIVE Subject Start: 1089 Subject End: 1276 ......................................................................................................................................................................................................................................................................................................................................gttttcaacaatgaagatgagtttagaatcattccaaataagcacgtaaatggaaacggattttgaagacaaaaaagtg-agaaacgaactttttcagatcgaaacatgacttttgagagataagaaaacgatctgtatataaatcattttcgatttgtatatagatcgtttttgatctatatataaa........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ ......................................................................................................................................................................................................................................................................................................................................gttttcaacaacgaagcggaatttggaatgattctaaataagcacctgaaagggaacggattttgatgtcgaaaatatgaagaaacgaactttttcaggtcaaaatatggtttatgggagacaagataacgatctatatacaaactgtttacgataaatatatagatcgttttcgatttgtatataaa........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ HSP 2 e-value: 2.0E-6 bit: 56.0 Len: 40 Query Start:455 Query End:494 Subject Strand: POSITIVE Subject Start: 1262 Subject End: 1301 ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................cgatctgtatataaatcattttcgatttgtatatagatcg........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................cgatttgtatataaatcattttcaatttatatatagatcg........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: NC_002950_PG0022_PG0024|sulfate permease family protein:redox-sensing transcriptional repressor Rex|NEGATIVE:POSITIVE|[26887,27871]|985 HSP 1 e-value: 1.0E-8 bit: 63.9 Len: 52 Query Start:462 Query End:513 Subject Strand: POSITIVE Subject Start: 421 Subject End: 472 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................tatataaatcattttcgatttgtatatagatcgtttttgatctatatataaa........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................tatataaatcattttccatttgtatatagatcgtattcgatttgtatataaa........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ HSP 2 e-value: 1.0E-5 bit: 54.0 Len: 43 Query Start:327 Query End:369 Subject Strand: POSITIVE Subject Start: 241 Subject End: 283 ......................................................................................................................................................................................................................................................................................................................................gttttcaacaatgaagatgagtttagaatcattccaaataagc........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ ......................................................................................................................................................................................................................................................................................................................................gttttcaacaacgaagaagagtttggaatcattctaaataagc........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Subject: NC_002950_PG0094_PG0095|outer membrane efflux protein, putative:DNA mismatch repair protein|NEGATIVE:NEGATIVE|[111284,112177]|894 HSP 1 e-value: 2.0E-7 bit: 60.0 Len: 62 Query Start:452 Query End:513 Subject Strand: NEGATIVE Subject Start: 678 Subject End: 739 ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................aaacgatctgtatataaatcattttcgatttgtatatagatcgtttttgatctatatataaa........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................aaacgatctgtatataaatgaatttcgatttatatacagaccatttttgttttatatataaa........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ HSP 2 e-value: 2.0E-6 bit: 56.0 Len: 44 Query Start:327 Query End:370 Subject Strand: NEGATIVE Subject Start: 778 Subject End: 821 ......................................................................................................................................................................................................................................................................................................................................gttttcaacaatgaagatgagtttagaatcattccaaataagca....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ......................................................................................................................................................................................................................................................................................................................................gttttcaacaacgaagacgagcttggaatcattccaaataagca....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: NC_002950_PG1130_PG1132|TPR domain protein:valyl-tRNA synthetase|POSITIVE:POSITIVE|[1210191,1211051]|861 HSP 1 e-value: 6.0E-7 bit: 58.0 Len: 45 Query Start:327 Query End:371 Subject Strand: NEGATIVE Subject Start: 527 Subject End: 571 ......................................................................................................................................................................................................................................................................................................................................gttttcaacaatgaagatgagtttagaatcattccaaataagcac...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ......................................................................................................................................................................................................................................................................................................................................gttttcaacaacgaagatgagttttgaatgattctaaataagcac...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 2.0E-6 bit: 56.0 Len: 52 Query Start:462 Query End:513 Subject Strand: NEGATIVE Subject Start: 362 Subject End: 413 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................tatataaatcattttcgatttgtatatagatcgtttttgatctatatataaa........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................tatataaatcattttcgatctgtatattaatcgttttcaatttatatataaa........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ HSP 3 e-value: 2.0E-6 bit: 56.0 Len: 60 Query Start:451 Query End:510 Subject Strand: NEGATIVE Subject Start: 387 Subject End: 446 ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................aaaacgatctgtatataaatcattttcgatttgtatatagatcgtttttgatctatatat........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................aaaacgatttgtatatcaaccattttcgatttatatataaatcattttcgatctgtatat........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: NC_002950_PG0404_PG0408|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[440197,441041]|845 HSP 1 e-value: 2.0E-6 bit: 56.0 Len: 44 Query Start:327 Query End:370 Subject Strand: NEGATIVE Subject Start: 626 Subject End: 669 ......................................................................................................................................................................................................................................................................................................................................gttttcaacaatgaagatgagtttagaatcattccaaataagca....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ......................................................................................................................................................................................................................................................................................................................................gttttcaacaacgaagacgagtttggaatgattccaaataagca....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 1.0E-5 bit: 54.0 Len: 79 Query Start:453 Query End:531 Subject Strand: NEGATIVE Subject Start: 464 Subject End: 542 ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................aacgatctgtatataaatcattttcgatttgtatatagatcgtttttgatctatatataaactgatttcaataaatata...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................aacgatttgtatataaatgactttcaatttatatataaatggttttcgttttatatataaatcgttttcaataaatata...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ GUGAUCUCUUGUUUUCGGUCGCAAAUAUAGUAUUCCUCCGAUUAAUGCUAAAUAUCCGGAAGCAAUUUGUCAGCUGCACACAUUCCGGCACCACCGGCCUGACAUGAACUCGAUGUAAGCGAAAUAUCGAAGUUUCUGUUUGUCAGAGCAUUUUUUCAGAUCGAAAAAUUUCAACUUGAAAGCCCUAUAGCAGCAAAAGCCAUUCGUAUACUGUCUGUUAUCCCCAUGAACUCUCACUCGCCCAAACAAUUAGGGAAACCAUGCAAAGAGAAAAAGACUCCUUGUUUUGUAUCAUCCUGUAUGGGGAAAACCACGUGCCAAAAAAAGUUUUCAACAAUGAAGAUGAGUUUAGAAUCAUUCCAAAUAAGCACGUAAAUGGAAACGGAUUUUGAAGACAAAAAAGUGAGAAACGAACUUUUUCAGAUCGAAACAUGACUUUUGAGAGAUAAGAAAACGAUCUGUAUAUAAAUCAUUUUCGAUUUGUAUAUAGAUCGUUUUUGAUCUAUAUAUAAACUGAUUUCAAUAAAUAUACAAAUCAAAUUCUAUUUAUAUAUAAAAUGCAUGGCAUAAAAACAAUUUAAGGAGGUAGAAUAGAUAAGGAACGCACCAAAUUCUUCAACGAAUUUGGUGCGUGCCUUAUCUGUGUUUGGACUAUCGGUGAGGGUUAUUCCGGCUUAUACCUCAUAAUCAUGAUAGAAAUCUAUCGACUCCUUGGAACAAGAGAUAUAUGAAUACACAAAAACAGAUAGGUCAAAACGGCUAUAGAGGUGGAGGAAUUCAGCGCACAUAUUCUUAUCAUUCAGUUAUUUAGCAAGCAAUUCCAUUCAAUCGAAAAGCAUUUUCAAUAGCGAUCAUUAGUAUCGAGCAAAAGUGUUUUAUCAGCUGCAAAUAUAACAAAAAGACUUGAGUAUGAAAAUUCAUAGUUCCCGAACAAAUAUUCGUCGAUAUUGUCAAUGAUCAAGACAGAAAAAUUUUUCACUUAGAUAUUCAUUCUUCAUUUA ((((..(((((..(((((..((.......(.((((((((....((((((..(((..(((((((....((((((...........((((.....)))).)))))).....(((((((.......))))))).)))))))..)))...)))))).((((((...(((....)))...))))))((((((((((.((....))..........(((((((((..((.....(((((((((.((.((((((.....((....)).................(((((((..((((....((((.....)))).......((((((......(((((((....)))))))..(((((.............)))))..((((((((((...((((((((((...(((((((.........)))))))(((.((((((......)))))).((((..((((((((((((((((((((((......)))))))))))))))))))))).)))).........))).)))))..........)))))...))))))))))............))))))....))))..))))))).....((((((((((.(((((((((((((......))))))))))))).)))))))))))))))).....))))))))))).....))........((((((((..(((((....))))).....((((...)))).))).))))).........))))))))).........))))))).))))))))))).)......(((((((...((.((..(((((...(((.((........((....))((((((((((......(((((....).))))....))))))))))....)))))....)))))..)).))...)))))))..........))..))))).......((((.(((...))).)))).)))))..((((....))))..........)))).......... (-260.92) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAAAUGAAGAAUGAAUAUCUAAGUGAAAAAUUUUUCUGUCUUGAUCAUUGACAAUAUCGACGAAUAUUUGUUCGGGAACUAUGAAUUUUCAUACUCAAGUCUUUUUGUUAUAUUUGCAGCUGAUAAAACACUUUUGCUCGAUACUAAUGAUCGCUAUUGAAAAUGCUUUUCGAUUGAAUGGAAUUGCUUGCUAAAUAACUGAAUGAUAAGAAUAUGUGCGCUGAAUUCCUCCACCUCUAUAGCCGUUUUGACCUAUCUGUUUUUGUGUAUUCAUAUAUCUCUUGUUCCAAGGAGUCGAUAGAUUUCUAUCAUGAUUAUGAGGUAUAAGCCGGAAUAACCCUCACCGAUAGUCCAAACACAGAUAAGGCACGCACCAAAUUCGUUGAAGAAUUUGGUGCGUUCCUUAUCUAUUCUACCUCCUUAAAUUGUUUUUAUGCCAUGCAUUUUAUAUAUAAAUAGAAUUUGAUUUGUAUAUUUAUUGAAAUCAGUUUAUAUAUAGAUCAAAAACGAUCUAUAUACAAAUCGAAAAUGAUUUAUAUACAGAUCGUUUUCUUAUCUCUCAAAAGUCAUGUUUCGAUCUGAAAAAGUUCGUUUCUCACUUUUUUGUCUUCAAAAUCCGUUUCCAUUUACGUGCUUAUUUGGAAUGAUUCUAAACUCAUCUUCAUUGUUGAAAACUUUUUUUGGCACGUGGUUUUCCCCAUACAGGAUGAUACAAAACAAGGAGUCUUUUUCUCUUUGCAUGGUUUCCCUAAUUGUUUGGGCGAGUGAGAGUUCAUGGGGAUAACAGACAGUAUACGAAUGGCUUUUGCUGCUAUAGGGCUUUCAAGUUGAAAUUUUUCGAUCUGAAAAAAUGCUCUGACAAACAGAAACUUCGAUAUUUCGCUUACAUCGAGUUCAUGUCAGGCCGGUGGUGCCGGAAUGUGUGCAGCUGACAAAUUGCUUCCGGAUAUUUAGCAUUAAUCGGAGGAAUACUAUAUUUGCGACCGAAAACAAGAGAUCAC ......................((((.....(((((.(((..((((((((....((((((((((....((((.(((...(((((....))))))))..(((...((((.......))))..)))..))))..)))).)))))).))))))))..............(((((((((((...........(((((((((.(((...............(((((...(((((..((((......((((..(((((...((((((((((((((((......(((.(((((((.(((((((....)))))))..(((((......(((....)))......((.(((((.....(((((((((.((((((((.(((((((((((((......))))))))))))).))))))))..........................((((((((..............((((..((((((((((((..((((...((.((((.((((((((((......)))))))))).)))).))...))))..))))))))))))..))))...........................(((((((.......(((.(((((((((..(((...(((..........(((((((..((((((.....))))))......((((....))))..........)))))))((......)).....)))))).)))))).)))))).)))))))....)))))))).........)))))))))..))))).)))))))))))))).))).)))))))))..(((....)))....(((((((((((..(((((....)))))..)))))....))))))..)))))))...((((((...........)))))).....)))))..))))))))..)))))..)))))((.........))...))).))))))))))))))))))))..............))).))))).......)))) (-254.40) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 580 370 321 204 155 NC_002950:PG1148|5end_hypothetical_protein_1231204..1231434_POSITIVE 513 498 453 121 76 NC_002950:PG1222|5end_hypothetical_protein_1299392..1299622_NEGATIVE 480 360 314 230 185 NC_002950:PG1166|5end_hypothetical_protein_1248443..1248673_NEGATIVE 440 350 301 216 170 NC_002950:PG0996|5end_conserved_hypothetical_protein_TIGR01777_1055592..1055822_POSITIVE 426 120 71 63 7 NC_002950:PG0017|5end_sensor_histidine_kinase_18307..18537_POSITIVE 397 498 455 167 118 NC_002950:PG1223|5end_hypothetical_protein_1299461..1299691_POSITIVE 386 638 594 198 152 NC_002950:PG1317|5end_hypothetical_protein_1397154..1397384_NEGATIVE 386 110 62 65 5 NC_002950:PG0302|5end_hypothetical_protein_338219..338449_POSITIVE 384 97 61 218 187 NC_002950:PG1105|5end_RNA_polymerase_sigma-54_factor_1177173..1177403_NEGATIVE 376 98 57 76 32 NC_002950:PG2218|5end_potassium_uptake_protein_TrkA_2331580..2331810_POSITIVE 370 490 441 184 133 NC_002950:PG0390|5end_50S_ribosomal_protein_L11_422822..423052_POSITIVE 362 226 182 206 151 NC_002950:PG0090|5end_Dps_family_protein_105524..105754_POSITIVE 352 102 62 60 12 NC_002950:PG0422|5end_hypothetical_protein_462302..462532_NEGATIVE 351 96 57 231 191 NC_002950:PG1042|5end_glycogen_synthase,_putative_1110638..1110868_NEGATIVE 345 665 625 210 164 NC_002950:PG1691|5end_hypothetical_protein_1776484..1776714_NEGATIVE 341 99 61 184 151 NC_002950:PG0510|5end_hypothetical_protein_550060..550290_NEGATIVE 339 100 56 71 21 NC_002950:PG0376|5end_30S_ribosomal_protein_S9_406399..406629_POSITIVE 338 98 56 153 104 NC_002950:PG1351|5end_hypothetical_protein_1432744..1432974_NEGATIVE 337 98 55 181 142 NC_002950:PG2074|5end_hypothetical_protein_2174661..2174891_NEGATIVE 337 98 55 181 142 NC_002950:PG1670|5end_hypothetical_protein_1755853..1756083_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 502 649 602 65 20 NC_002950:PG1866|3end_hypothetical_protein_1964736..1964886_POSITIVE 386 638 594 150 104 NC_002950:PG1318|3end_RNA_polymerase_sigma-70_factor,_ECF_subfamily_1397202..1397352_NEGATIVE 370 490 441 115 64 NC_002950:PG0389|3end_transcription_antitermination_protein_NusG_422833..422983_POSITIVE 364 679 631 86 23 NC_002950:PG1005|3end_lipoprotein,_putative_1063023..1063173_NEGATIVE 359 494 451 44 1 NC_002950:PG0773|3end_hypothetical_protein_825348..825498_POSITIVE 358 360 315 96 54 NC_002950:PG2166|3end_hypothetical_protein_2271999..2272149_POSITIVE 355 89 56 147 116 NC_002950:PG1608|3end_methylmalonyl-CoA_decarboxylase,_beta_subunit_1688685..1688835_NEGATIVE 353 100 57 63 18 NC_002950:PG1786|3end_hypothetical_protein_1875322..1875472_POSITIVE 350 120 73 52 1 NC_002950:PG0016|3end_sigma-54_dependent_DNA-binding_response_regulator_18376..18526_POSITIVE 343 98 52 136 79 NC_002950:PG0555|3end_DNA-binding_protein,_histone-like_family_611716..611866_NEGATIVE 342 498 451 82 35 NC_002950:PG1357|3end_hypothetical_protein_1436327..1436477_NEGATIVE 341 99 61 148 115 NC_002950:PG0511|3end_spore_maturation_protein_A/spore_maturation_protein_B_550096..550246_NEGATIVE 341 887 844 134 99 NC_002950:PG0003|3end_hypothetical_protein_1919..2069_NEGATIVE 339 100 56 61 11 NC_002950:PG0375|3end_50S_ribosomal_protein_L13_406469..406619_POSITIVE 336 666 626 67 14 NC_002950:PG1213|3end_ribonuclease_H_1293163..1293313_POSITIVE 329 96 56 63 16 NC_002950:PG0803|3end_glucosamine-6-phosphate_deaminase_859727..859877_NEGATIVE 329 120 72 54 2 NC_002950:PG0354|3end_hypothetical_protein_389131..389281_NEGATIVE 328 672 637 98 58 NC_002950:PG1692|3end_ABC_transporter,_ATP-binding_protein_1776514..1776664_NEGATIVE 326 111 73 67 31 NC_002950:PG0769|3end_fibronectin_type_III_domain_protein_822555..822705_NEGATIVE 322 105 66 43 4 NC_002950:PG2221|3end_MiaB-like_tRNA_modifying_enzyme_2336840..2336990_POSITIVE