Origin IGS: acatagttcatcaagcctcttggaagtcgcaggaattggctacatttgcaaaaacacaaacgacttcaacgaagctaaatatctctatcctaacacttatcatccgaattaaaaacggcttaataatgaacgcgtatattcatccatttatgctccttacccctcactctcctattatctttgtcttatctaccgtatgccaatccggtttcggacaaaagagcattttctcctatgatgaatagtccgaaataaggttcccatactcattccaaaagacaaggcacccgccgagttcgctatgcaactcgacgggtgcctcttttatttcagctccagaaaaggcctttttcagcctgcgatttatatagaaatcattttcaatctatatataaatgaaaaacgatttatatacaaattgaaaacgatctatatatttattgaaatcgttttatatacaaatcgttctccgacctc .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 gaggtcggagaacgatttgtatataaaacgatttcaataaatatatagatcgttttcaatttgtatataaatcgtttttcatttatatatagattgaaaatgatttctatataaatcgcaggctgaaaaaggccttttctggagctgaaataaaagaggcacccgtcgagttgcatagcgaactcggcgggtgccttgtcttttggaatgagtatgggaaccttatttcggactattcatcataggagaaaatgctcttttgtccgaaaccggattggcatacggtagataagacaaagataataggagagtgaggggtaaggagcataaatggatgaatatacgcgttcattattaagccgtttttaattcggatgataagtgttaggatagagatatttagcttcgttgaagtcgtttgtgtttttgcaaatgtagccaattcctgcgacttccaagaggcttgatgaactatgt Mask Tandem Repeat Region ================================================ acatagttcatcaagcctcttggaagtcgcaggaattggctacatttgcaaaaacacaaacgacttcaacgaagctaaatatctctatcctaacacttatcatccgaattaaaaacggcttaataatgaacgcgtatattcatccatttatgctccttacccctcactctcctattatctttgtcttatctaccgtatgccaatccggtttcggacaaaagagcattttctcctatgatgaatagtccgaaataaggttcccatactcattccaaaagacaaggcacccgccgagttcgctatgcaactcgacgggtgcctcttttatttcagctccagaaaaggcctttttcagcctgcgatttatatagaaatcattttcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgttttatatacaaatcgttctccgacctc Find is-nt database================================================ Query_seq: PG1356:PG1357|PG1356:PG1357:hypothetical protein:hypothetical protein:<-<-:1435940..1436416 477 acatagttcatcaagcctcttggaagtcgcaggaattggctacatttgcaaaaacacaaacgacttcaacgaagctaaatatctctatcctaacacttatcatccgaattaaaaacggcttaataatgaacgcgtatattcatccatttatgctccttacccctcactctcctattatctttgtcttatctaccgtatgccaatccggtttcggacaaaagagcattttctcctatgatgaatagtccgaaataaggttcccatactcattccaaaagacaaggcacccgccgagttcgctatgcaactcgacgggtgcctcttttatttcagctccagaaaaggcctttttcagcctgcgatttatatagaaatcattttcaatctatatataaatgaaaaacgatttatatacaaattgaaaacgatctatatatttattgaaatcgttttatatacaaatcgttctccgacctc Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PG1356:PG1357|PG1356:PG1357:hypothetical protein:hypothetical protein:<-<-:1435940..1436416 477 acatagttcatcaagcctcttggaagtcgcaggaattggctacatttgcaaaaacacaaacgacttcaacgaagctaaatatctctatcctaacacttatcatccgaattaaaaacggcttaataatgaacgcgtatattcatccatttatgctccttacccctcactctcctattatctttgtcttatctaccgtatgccaatccggtttcggacaaaagagcattttctcctatgatgaatagtccgaaataaggttcccatactcattccaaaagacaaggcacccgccgagttcgctatgcaactcgacgggtgcctcttttatttcagctccagaaaaggcctttttcagcctgcgatttatatagaaatcattttcaatctatatataaatgaaaaacgatttatatacaaattgaaaacgatctatatatttattgaaatcgttttatatacaaatcgttctccgacctc Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PG1356:PG1357|PG1356:PG1357:hypothetical protein:hypothetical protein:<-<-:1435940..1436416 477 acatagttcatcaagcctcttggaagtcgcaggaattggctacatttgcaaaaacacaaacgacttcaacgaagctaaatatctctatcctaacacttatcatccgaattaaaaacggcttaataatgaacgcgtatattcatccatttatgctccttacccctcactctcctattatctttgtcttatctaccgtatgccaatccggtttcggacaaaagagcattttctcctatgatgaatagtccgaaataaggttcccatactcattccaaaagacaaggcacccgccgagttcgctatgcaactcgacgggtgcctcttttatttcagctccagaaaaggcctttttcagcctgcgatttatatagaaatcattttcaatctatatataaatgaaaaacgatttatatacaaattgaaaacgatctatatatttattgaaatcgttttatatacaaatcgttctccgacctc Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 acatagttcatcaagcctcttggaagtcgcaggaattggctacatttgcaaaaacacaaacgacttcaacgaagctaaatatctctatcctaacacttatcatccgaattaaaaacggcttaataatgaacgcgtatattcatccatttatgctccttacccctcactctcctattatctttgtcttatctaccgtatgccaatccggtttcggacaaaagagcattttctcctatgatgaatagtccgaaataaggttcccatactcattccaaaagacaaggcacccgccgagttcgctatgcaactcgacgggtgcctcttttatttcagctccagaaaaggcctttttcagcctgcgatttatatagaaatcattttcaatctatatataaatgaaaaacgatttatatacaaattgaaaacgatctatatatttattgaaatcgttttatatacaaatcgttctccgacctc Predict ORF larger than 30AA ================================================ Protein_Len: 30 Strand: + Start: 20 End: 109 ................... M E V A G I G Y I C K N T N D F N E A K Y L Y P N T Y H P N ................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 30 Strand: + Start: 146 End: 235 ................................................................................................................................................. M Y A P Y P S L S Y Y L C L I Y R M P I R F R T K E H F L L .................................................................................................................................................................................................................................................. Protein_Len: 60 Strand: + Start: 3 End: 242 .. M V H Q A S W K S Q E L A T F A K T Q T T S T K L N I S I L T L I I R I K N G L I M N A Y I H P F M L L T P H S P I I F ........................................................................................................................................................................................................................................... Protein_Len: 39 Strand: + Start: 136 End: 252 ....................................................................................................................................... M F I H L C S L P L T L L L S L S Y L P Y A N P V S D K R A F S P M M N S P K ................................................................................................................................................................................................................................. Protein_Len: 39 Strand: + Start: 252 End: 368 ........................................................................................................................................................................................................................................................... M R F P Y S F Q K T R H P P S S L C N S T G A S F I S A P E K A F F S L R F I ............................................................................................................. Protein_Len: 60 Strand: + Start: 242 End: 475 ................................................................................................................................................................................................................................................. M V R N K V P I L I P K D K A P A E F A M Q L D G C L F Y F S S R K G L F Q P A I Y I E I I F N L Y I N E K R F I Y K L .. Protein_Len: 50 Strand: - Start: 236 End: 385 ........................................................................................................................................................................................................................................... S S Y D S I L N G Y E N W F V L C G G L E S H L E V P A E K I E A G S F A K K L R R N I Y F D N E M ............................................................................................ Protein_Len: 37 Strand: - Start: 193 End: 303 ................................................................................................................................................................................................ R I G I R N R V F S C K R R H H I T R F L T G M S M G F S L A G A S N A M .............................................................................................................................................................................. Protein_Len: 42 Strand: - Start: 14 End: 139 ............. A E Q F D C S N A V N A F V C V V E V F S F I E I R V S I M R I L F P K I I F A Y M .................................................................................................................................................................................................................................................................................................................................................. acatagttcatcaagcctcttggaagtcgcaggaattggctacatttgcaaaaacacaaacgacttcaacgaagctaaatatctctatcctaacacttatcatccgaattaaaaacggcttaataatgaacgcgtatattcatccatttatgctccttacccctcactctcctattatctttgtcttatctaccgtatgccaatccggtttcggacaaaagagcattttctcctatgatgaatagtccgaaataaggttcccatactcattccaaaagacaaggcacccgccgagttcgctatgcaactcgacgggtgcctcttttatttcagctccagaaaaggcctttttcagcctgcgatttatatagaaatcattttcaatctatatataaatgaaaaacgatttatatacaaattgaaaacgatctatatatttattgaaatcgttttatatacaaatcgttctccgacctc Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ acatagttcatcaagcctcttggaagtcgcaggaattggctacatttgcaaaaacacaaacgacttcaacgaagctaaatatctctatcctaacacttatcatccgaattaaaaacggcttaataatgaacgcgtatattcatccatttatgctccttacccctcactctcctattatctttgtcttatctaccgtatgccaatccggtttcggacaaaagagcattttctcctatgatgaatagtccgaaataaggttcccatactcattccaaaagacaaggcacccgccgagttcgctatgcaactcgacgggtgcctcttttatttcagctccagaaaaggcctttttcagcctgcgatttatatagaaatcattttcaatctatatataaatgaaaaacgatttatatacaaattgaaaacgatctatatatttattgaaatcgttttatatacaaatcgttctccgacctc Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 42 HP_score: -2.6 Tail_Score: -2.81464 Start: 213 End: 233 Full_Region: TGCCAATCCGGTTTC GGACAAAA GAGCA TTTTCTCC TATGATGAATAGTCC ....................................................................................................................................................................................................................GGACAAAAGAGCATTTTCTCC.................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 100 HP_score: -16.4 Tail_Score: -4.15006 Start: 278 End: 325 Full_Region: tctggagctgaaata aaagaggcacccgtcgagttgc ata gcgaactcggcgggtgccttgtc ttttggaatgagtat .....................................................................................................................................................................................................................................................................................aaagaggcacccgtcgagttgcatagcgaactcggcgggtgccttgtc........................................................................................................................................................ TransTerm Strand: + Conf: 100 HP_score: -18.1 Tail_Score: -4.88918 Start: 281 End: 322 Full_Region: CTCATTCCAAAAGAC AAGGCACCCGCCGAGTTCGC TAT GCAACTCGACGGGTGCCTC TTTTATTTCAGCTCC ........................................................................................................................................................................................................................................................................................AAGGCACCCGCCGAGTTCGCTATGCAACTCGACGGGTGCCTC........................................................................................................................................................... TransTerm Strand: + Conf: 100 HP_score: -20.7 Tail_Score: -4.06281 Start: 283 End: 320 Full_Region: CATTCCAAAAGACAA GGCACCCGCCGAGTTCGC TAT GCAACTCGACGGGTGCC TCTTTTATTTCAGCT ..........................................................................................................................................................................................................................................................................................GGCACCCGCCGAGTTCGCTATGCAACTCGACGGGTGCC............................................................................................................................................................. TransTerm Strand: - Conf: 100 HP_score: -22.9 Tail_Score: -3.96506 Start: 283 End: 320 Full_Region: agctgaaataaaaga ggcacccgtcgagttgc ata gcgaactcggcgggtgcc ttgtcttttggaatg ..........................................................................................................................................................................................................................................................................................ggcacccgtcgagttgcatagcgaactcggcgggtgcc............................................................................................................................................................. TransTerm Strand: - Conf: 89 HP_score: -10.9 Tail_Score: -4.1399 Start: 375 End: 428 Full_Region: caataaatatataga tcgttttcaatttgtatataaat cgtttttc atttatatatagattgaaaatga tttctatataaatcg ......................................................................................................................................................................................................................................................................................................................................................................................tcgttttcaatttgtatataaatcgtttttcatttatatatagattgaaaatga................................................. Find igs database================================================ Query_seq: PG1356:PG1357|PG1356:PG1357:hypothetical protein:hypothetical protein:<-<-:1435940..1436416 477 acatagttcatcaagcctcttggaagtcgcaggaattggctacatttgcaaaaacacaaacgacttcaacgaagctaaatatctctatcctaacacttatcatccgaattaaaaacggcttaataatgaacgcgtatattcatccatttatgctccttacccctcactctcctattatctttgtcttatctaccgtatgccaatccggtttcggacaaaagagcattttctcctatgatgaatagtccgaaataaggttcccatactcattccaaaagacaaggcacccgccgagttcgctatgcaactcgacgggtgcctcttttatttcagctccagaaaaggcctttttcagcctgcgatttatatagaaatcattttcaatctatatataaatgaaaaacgatttatatacaaattgaaaacgatctatatatttattgaaatcgttttatatacaaatcgttctccgacctc Intra-Species Hit: Count: 7 Min: 1 Max: 477 Len: 477 Subject: NC_002950_PG1356_PG1357|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[1435940,1436416]|477 HSP 1 e-value: 0.0 bit: 946.0 Len: 477 Query Start:1 Query End:477 Subject Strand: POSITIVE Subject Start: 1 Subject End: 477 acatagttcatcaagcctcttggaagtcgcaggaattggctacatttgcaaaaacacaaacgacttcaacgaagctaaatatctctatcctaacacttatcatccgaattaaaaacggcttaataatgaacgcgtatattcatccatttatgctccttacccctcactctcctattatctttgtcttatctaccgtatgccaatccggtttcggacaaaagagcattttctcctatgatgaatagtccgaaataaggttcccatactcattccaaaagacaaggcacccgccgagttcgctatgcaactcgacgggtgcctcttttatttcagctccagaaaaggcctttttcagcctgcgatttatatagaaatcattttcaatctatatataaatgaaaaacgatttatatacaaattgaaaacgatctatatatttattgaaatcgttttatatacaaatcgttctccgacctc acatagttcatcaagcctcttggaagtcgcaggaattggctacatttgcaaaaacacaaacgacttcaacgaagctaaatatctctatcctaacacttatcatccgaattaaaaacggcttaataatgaacgcgtatattcatccatttatgctccttacccctcactctcctattatctttgtcttatctaccgtatgccaatccggtttcggacaaaagagcattttctcctatgatgaatagtccgaaataaggttcccatactcattccaaaagacaaggcacccgccgagttcgctatgcaactcgacgggtgcctcttttatttcagctccagaaaaggcctttttcagcctgcgatttatatagaaatcattttcaatctatatataaatgaaaaacgatttatatacaaattgaaaacgatctatatatttattgaaatcgttttatatacaaatcgttctccgacctc Subject: NC_002950_PG1411_PG1414|potassium uptake protein TrkA, putative:hypothetical protein|NEGATIVE:POSITIVE|[1495257,1497148]|1892 HSP 1 e-value: 2.0E-33 bit: 145.0 Len: 129 Query Start:313 Query End:441 Subject Strand: NEGATIVE Subject Start: 1242 Subject End: 1370 ........................................................................................................................................................................................................................................................................................................................cgggtgcctcttttatttcagctccagaaaaggcctttttcagcctgcgatttatatagaaatcattttcaatctatatataaatgaaaaacgatttatatacaaattgaaaacgatctatatatttat.................................... ........................................................................................................................................................................................................................................................................................................................cgggtgcctcttttatttcagcttccgaaagggcctttttcggtcttcgatttatatacaaatgagtttcgatctatatataaattgaaaatgatttatatacaaatcgaaaacgatctatatatttat.................................... Subject: NC_002950_PG1145_PG1148|long-chain-fatty-acid--CoA ligase, putative:hypothetical protein|NEGATIVE:POSITIVE|[1230396,1231343]|948 HSP 1 e-value: 4.0E-25 bit: 117.0 Len: 95 Query Start:313 Query End:407 Subject Strand: POSITIVE Subject Start: 620 Subject End: 714 ........................................................................................................................................................................................................................................................................................................................cgggtgcctcttttatttcagctccagaaaaggcctttttcagcctgcgatttatatagaaatcattttcaatctatatataaatgaaaaacgat...................................................................... ........................................................................................................................................................................................................................................................................................................................cgggtgcctcttttatttcggctctcgaaaaagcctttttcggcctgcgatttatatacaaatcactttcaagctatatataaatggaaaacgat...................................................................... HSP 2 e-value: 5.0E-6 bit: 54.0 Len: 59 Query Start:409 Query End:467 Subject Strand: POSITIVE Subject Start: 694 Subject End: 752 ........................................................................................................................................................................................................................................................................................................................................................................................................................tatatacaaattgaaaacgatctatatatttattgaaatcgttttatatacaaatcgtt.......... ........................................................................................................................................................................................................................................................................................................................................................................................................................tatatataaatggaaaacgatctgtatatttattgcaaatgatttatatataaatcgtt.......... Subject: NC_002950_PG1167_PG1169|hypothetical protein:hypothetical protein|POSITIVE:NEGATIVE|[1248705,1249172]|468 HSP 1 e-value: 2.0E-23 bit: 111.0 Len: 124 Query Start:344 Query End:467 Subject Strand: NEGATIVE Subject Start: 62 Subject End: 185 .......................................................................................................................................................................................................................................................................................................................................................ggcctttttcagcctgcgatttatatagaaatcattttcaatctatatataaatgaaaaacgatttatatacaaattgaaaacgatctatatatttattgaaatcgttttatatacaaatcgtt.......... .......................................................................................................................................................................................................................................................................................................................................................ggcctttttcagcctctgatttatatagaaaagacttccgatctatatataaatggaaaacgatttatatataaaacgaaaacgatctatatatagatcgaaaacggtttatatacagatcgtt.......... Subject: NC_002950_PG0609_PG0610|hypothetical protein:hypothetical protein|POSITIVE:NEGATIVE|[663416,663693]|278 HSP 1 e-value: 4.0E-22 bit: 107.0 Len: 162 Query Start:306 Query End:467 Subject Strand: NEGATIVE Subject Start: 13 Subject End: 174 .................................................................................................................................................................................................................................................................................................................aactcgacgggtgcctcttttatttcagctccagaaaaggcctttttcagcctgcgatttatatagaaatcattttcaatctatatataaatgaaaaacgatttatatacaaattgaaaacgatctatatatttattgaaatcgttttatatacaaatcgtt.......... .................................................................................................................................................................................................................................................................................................................aactcggcgggtgcttcttttatatcagctactgaaaaggctttttagagcctgcgatctatatacaaatcatttacgatctatatatttattgaaaacgattaatatataaaacgaaaatgatttatatataaattgaaaatgttttatatacagatcgtt.......... Subject: NC_002950_PG0404_PG0408|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[440197,441041]|845 HSP 1 e-value: 9.0E-20 bit: 99.6 Len: 162 Query Start:306 Query End:467 Subject Strand: POSITIVE Subject Start: 381 Subject End: 542 .................................................................................................................................................................................................................................................................................................................aactcgacgggtgcctcttttatttcagctccagaaaaggcctttttcagcctgcgatttatatagaaatcattttcaatctatatataaatgaaaaacgatttatatacaaattgaaaacgatctatatatttattgaaatcgttttatatacaaatcgtt.......... .................................................................................................................................................................................................................................................................................................................aactcggcgggtgcttcttttatatcggcttcggaaaaggccttttcgagcctgcgatttatatacgaatcacttacgatctatatatttattgaaaacgatttatatataaaacgaaaaccatttatatataaattgaaagtcatttatatacaaatcgtt.......... Subject: NC_002950_PG1889_PG1890|hypothetical protein:lipoprotein, putative|POSITIVE:POSITIVE|[1987151,1987704]|554 HSP 1 e-value: 1.0E-18 bit: 95.6 Len: 128 Query Start:339 Query End:466 Subject Strand: POSITIVE Subject Start: 111 Subject End: 238 ..................................................................................................................................................................................................................................................................................................................................................gaaaaggcctttttcagcctgcgatttatatagaaatcattttcaatctatatataaatgaaaaacgatttatatacaaattgaaaacgatctatatatttattgaaatcgttttatatacaaatcgt........... ..................................................................................................................................................................................................................................................................................................................................................gaaaaggccttttggggcctgcgttttatatacaaatcgtttacgatatatatatttattgaaaacgatttatatataaattgaaaacgatctatatataaattgaaaatggtttatatacagatcgt........... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ ACAUAGUUCAUCAAGCCUCUUGGAAGUCGCAGGAAUUGGCUACAUUUGCAAAAACACAAACGACUUCAACGAAGCUAAAUAUCUCUAUCCUAACACUUAUCAUCCGAAUUAAAAACGGCUUAAUAAUGAACGCGUAUAUUCAUCCAUUUAUGCUCCUUACCCCUCACUCUCCUAUUAUCUUUGUCUUAUCUACCGUAUGCCAAUCCGGUUUCGGACAAAAGAGCAUUUUCUCCUAUGAUGAAUAGUCCGAAAUAAGGUUCCCAUACUCAUUCCAAAAGACAAGGCACCCGCCGAGUUCGCUAUGCAACUCGACGGGUGCCUCUUUUAUUUCAGCUCCAGAAAAGGCCUUUUUCAGCCUGCGAUUUAUAUAGAAAUCAUUUUCAAUCUAUAUAUAAAUGAAAAACGAUUUAUAUACAAAUUGAAAACGAUCUAUAUAUUUAUUGAAAUCGUUUUAUAUACAAAUCGUUCUCCGACCUC .....((((((..(((.((...(((((((...(..((.((.......))...))..)...)))))))...)).)))...........................(((.........))).......))))))..((((((............(((..........................(((((((.......(((((..((((..(((((((((.......(((........))).......)))))))))..))))..))))).........)))))))((((((((.((((((.((...)))))))).))))))))...........)))....((..((((........)))).((((.((((((((..((.((((((((.(.(((((((((........))))))))).).)))))))).))))))))))...))))...)).....))))))...(((.....))).... (-106.53) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ GAGGUCGGAGAACGAUUUGUAUAUAAAACGAUUUCAAUAAAUAUAUAGAUCGUUUUCAAUUUGUAUAUAAAUCGUUUUUCAUUUAUAUAUAGAUUGAAAAUGAUUUCUAUAUAAAUCGCAGGCUGAAAAAGGCCUUUUCUGGAGCUGAAAUAAAAGAGGCACCCGUCGAGUUGCAUAGCGAACUCGGCGGGUGCCUUGUCUUUUGGAAUGAGUAUGGGAACCUUAUUUCGGACUAUUCAUCAUAGGAGAAAAUGCUCUUUUGUCCGAAACCGGAUUGGCAUACGGUAGAUAAGACAAAGAUAAUAGGAGAGUGAGGGGUAAGGAGCAUAAAUGGAUGAAUAUACGCGUUCAUUAUUAAGCCGUUUUUAAUUCGGAUGAUAAGUGUUAGGAUAGAGAUAUUUAGCUUCGUUGAAGUCGUUUGUGUUUUUGCAAAUGUAGCCAAUUCCUGCGACUUCCAAGAGGCUUGAUGAACUAUGU (((((((.((.((.(((((((.(((((((((((((((....(((((((((((((((((((((((((((((((........)))))))))))))))))))))))..))))))))......(((((......))))).....(((((((((......(((((((((((((((((((...)).)))))))))))))))))(((.((((((.((((.((((...((((((..(..(((.(((......((((......))))((((((....((((..........))))......)))))).......))).)))..)..))))))......((((((((........))))))))......)))).)))).)))))).)))...................))))))))).)))))))))))).)))...))))))))).........)).)))))))...................... (-152.50) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 932 50 1 141 92 NC_002950:PG1356|5end_hypothetical_protein_1435849..1436079_NEGATIVE 687 360 313 118 70 NC_002950:PG1223|5end_hypothetical_protein_1299461..1299691_POSITIVE 515 360 313 72 25 NC_002950:PG1574|5end_hypothetical_protein_1652613..1652843_NEGATIVE 515 360 313 78 31 NC_002950:PG0371|5end_hypothetical_protein_404043..404273_POSITIVE 417 326 282 170 120 NC_002950:PG1978|5end_hypothetical_protein_2067337..2067567_NEGATIVE 384 322 283 47 2 NC_002950:PG0128|5end_hypothetical_protein_149594..149824_POSITIVE 381 320 283 41 6 NC_002950:PG0511|5end_spore_maturation_protein_A/spore_maturation_protein_B_551328..551558_NEGATIVE 367 319 272 192 140 NC_002950:PG0910|5end_FHA_domain_protein_973666..973896_NEGATIVE 360 209 161 221 168 NC_002950:PG1534|5end_hypothetical_protein_1614147..1614377_NEGATIVE 360 300 252 78 18 NC_002950:PG1233|5end_hypothetical_protein_1309885..1310115_POSITIVE 357 360 313 110 67 NC_002950:PG0065|5end_efflux_transporter,_RND_family,_MFP_subunit_81187..81417_NEGATIVE 353 319 282 47 2 NC_002950:PG0228|5end_DdaH_family_protein_264950..265180_NEGATIVE 349 50 6 213 167 NC_002950:PG0986|5end_hypothetical_protein_1047426..1047656_POSITIVE 348 337 291 187 132 NC_002950:PG1381|5end_ABC_transporter,_permease_protein_1460622..1460852_POSITIVE 345 318 282 191 153 NC_002950:PG0684|5end_ABC_transporter,_permease_protein,_putative_737648..737878_POSITIVE 343 324 281 217 172 NC_002950:PG0854|5end_hypothetical_protein_914870..915100_POSITIVE 342 217 172 173 127 NC_002950:PG0883|5end_hypothetical_protein_945121..945351_POSITIVE 337 240 194 185 141 NC_002950:PG1565|5end_3-deoxy-D-manno-octulosonic-acid_transferase,_putative_1645859..1646089_NEGATIVE 336 325 282 103 56 NC_002950:PG1256|5end_ribonuclease,_Rne/Rng_family_1334262..1334492_NEGATIVE 335 320 271 188 141 NC_002950:PG0348|5end_ATP-dependent_DNA_helicase_RecG_382345..382575_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 615 320 274 52 5 NC_002950:PG1274|3end_elongation_factor_P_1352489..1352639_POSITIVE 507 318 274 50 5 NC_002950:PG0568|3end_elongation_factor_P_623999..624149_NEGATIVE 482 446 401 47 2 NC_002950:PG0773|3end_hypothetical_protein_825348..825498_POSITIVE 449 328 284 147 102 NC_002950:PG0371|3end_hypothetical_protein_404224..404374_POSITIVE 397 320 271 147 98 NC_002950:PG1657|3end_methylmalonyl-CoA_mutase_1741571..1741721_POSITIVE 369 318 274 88 37 NC_002950:PG1493|3end_hypothetical_protein_1569538..1569688_POSITIVE 367 319 272 67 15 NC_002950:PG0912|3end_polysaccharide_transport_protein,_putative_973791..973941_NEGATIVE 342 319 276 85 36 NC_002950:PG2207|3end_hypothetical_protein_2319142..2319292_NEGATIVE 342 320 274 54 11 NC_002950:PG1866|3end_hypothetical_protein_1964736..1964886_POSITIVE 335 320 271 145 98 NC_002950:PG0347|3end_UDP-glucose_4-epimerase_382382..382532_POSITIVE 333 318 277 140 88 NC_002950:PG1497|3end_DNA-binding_protein,_histone-like_family_1574635..1574785_POSITIVE 333 345 308 76 38 NC_002950:PG1473|3end_conjugative_transposon_protein_TraQ_1549761..1549911_NEGATIVE 333 322 282 134 88 NC_002950:PG0443|3end_hemagglutinin-related_protein_483147..483297_POSITIVE 333 321 284 125 73 NC_002950:PG0344|3end_purple_acid_phosphatase_378543..378693_NEGATIVE 332 320 276 50 2 NC_002950:PG0317|3end_peptidase,_M49_family_349771..349921_NEGATIVE 327 326 284 42 1 NC_002950:PG0471|3end_hypothetical_protein_513432..513582_POSITIVE 324 322 289 134 99 NC_002950:PG1570|3end_rhodanese-like_domain_protein_1648582..1648732_NEGATIVE 323 250 202 107 55 NC_002950:PG1808|3end_guanosine-3',5'-bis(diphosphate)_3'-pyrophosphohydrolase_1902955..1903105_NEGATIVE 320 318 287 48 9 NC_002950:PG1125|3end_hypothetical_protein_1201071..1201221_NEGATIVE 320 324 282 75 23 NC_002950:PG0198|3end_hypothetical_protein_237501..237651_POSITIVE