Origin IGS: tatgtaatgctttaagaaatcaggtttgaacccttttccgcaaagaaagagaggcgggatattacagtctgatggattcccctctttttgcgggctcacaatattacatcctttttcctacacaacgaaataattttgttgtgaaaaacaagcaaaaacactgaaaattacctacgtcgtctaccggggggctttgcctgcctttctctgctgacggatgcttacaggcgccggatcgtgggtcattgcctgcatccgaccttggaggtgaagggctgcttaagtgccctgcatcaagcttttgatttccatcgacaacgccgaatcgatacgacttttttcagtacacgtcaattgtttatgttcggaaaatttctttattcatgactcgaaaaacgtggcgcgggaaaattttgcttttggcgcgagaagtaaaatttttacgcgccagaacgaaaaaaatctcgcgccacctcttccgaaaaacacgagccgcagatgtgtaaaaactcgcacagaaaaagttgatgtgggtacaaaaagaagaagagagaggaggagagccccgatatccgataaaactactcaccagataccttccgaaaacataaatatcggatctgcatcaatagtgtcctaaaagtcagtttttggcaatagaaaggagaggaacttcccggtgtctctccttcgttgtgttatcagagtctccttgggccaataatataagcctgcttgcccaagttgttcgcttgtagcctcgccccttgattaagaatctctcggcagagttccaagtagacaagcacagcaatcctatctactacaaaaacaacatacgatttttttcagtacaggtcatttcgataatttgtgtctatatttgacagtagtagcacgaattttccatcgggaaaaaagagtgctgtggcgtttaattagagatactaactcatgtatgggaactctctgtagatatgcaatctaagtttgcaataccaaggcggacagatctcatcaaaaacaaagcgtatt .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 aatacgctttgtttttgatgagatctgtccgccttggtattgcaaacttagattgcatatctacagagagttcccatacatgagttagtatctctaattaaacgccacagcactcttttttcccgatggaaaattcgtgctactactgtcaaatatagacacaaattatcgaaatgacctgtactgaaaaaaatcgtatgttgtttttgtagtagataggattgctgtgcttgtctacttggaactctgccgagagattcttaatcaaggggcgaggctacaagcgaacaacttgggcaagcaggcttatattattggcccaaggagactctgataacacaacgaaggagagacaccgggaagttcctctcctttctattgccaaaaactgacttttaggacactattgatgcagatccgatatttatgttttcggaaggtatctggtgagtagttttatcggatatcggggctctcctcctctctcttcttctttttgtacccacatcaactttttctgtgcgagtttttacacatctgcggctcgtgtttttcggaagaggtggcgcgagatttttttcgttctggcgcgtaaaaattttacttctcgcgccaaaagcaaaattttcccgcgccacgtttttcgagtcatgaataaagaaattttccgaacataaacaattgacgtgtactgaaaaaagtcgtatcgattcggcgttgtcgatggaaatcaaaagcttgatgcagggcacttaagcagcccttcacctccaaggtcggatgcaggcaatgacccacgatccggcgcctgtaagcatccgtcagcagagaaaggcaggcaaagccccccggtagacgacgtaggtaattttcagtgtttttgcttgtttttcacaacaaaattatttcgttgtgtaggaaaaaggatgtaatattgtgagcccgcaaaaagaggggaatccatcagactgtaatatcccgcctctctttctttgcggaaaagggttcaaacctgatttcttaaagcattacata Mask Tandem Repeat Region ================================================ tatgtaatgctttaagaaatcaggtttgaacccttttccgcaaagaaagagaggcgggatattacagtctgatggattcccctctttttgcgggctcacaatattacatcctttttcctacacaacgaaataattttgttgtgaaaaacaagcaaaaacactgaaaattacctacgtcgtctaccggggggctttgcctgcctttctctgctgacggatgcttacaggcgccggatcgtgggtcattgcctgcatccgaccttggaggtgaagggctgcttaagtgccctgcatcaagcttttgatttccatcgacaacgccgaatcgatacgacttttttcagtacacgtcaattgtttatgttcggaaaatttctttattcatgactcgaaaaacgtggcgcgggaaaattttgcttttggcgcgagaagtaaaatttttacgcgccagaacgaaaaaaatctcgcgccacctcttccgaaaaacacgagccgcagatgtgtaaaaactcgcacagaaaaagttgatgtgggtacaaaaagaagaagagagaggaggagagccccgatatccgataaaactactcaccagataccttccgaaaacataaatatcggatctgcatcaatagtgtcctaaaagtcagtttttggcaatagaaaggagaggaacttcccggtgtctctccttcgttgtgttatcagagtctccttgggccaataatataagcctgcttgcccaagttgttcgcttgtagcctcgccccttgattaagaatctctcggcagagttccaagtagacaagcacagcaatcctatctactacaaaaacaacatacgatttttttcagtacaggtcatttcgataatttgtgtctatatttgacagtagtagcacgaattttccatcgggaaaaaagagtgctgtggcgtttaattagagatactaactcatgtatgggaactctctgtagatatgcaatctaagtttgcaataccaaggcggacagatctcatcaaaaacaaagcgtatt Find is-nt database================================================ Query_seq: PG1328:PG1330|PG1328:PG1330:CoA ligase family protein:large conductance mechanosensitive channel protein:<-->:1408771..1409805 1035 tatgtaatgctttaagaaatcaggtttgaacccttttccgcaaagaaagagaggcgggatattacagtctgatggattcccctctttttgcgggctcacaatattacatcctttttcctacacaacgaaataattttgttgtgaaaaacaagcaaaaacactgaaaattacctacgtcgtctaccggggggctttgcctgcctttctctgctgacggatgcttacaggcgccggatcgtgggtcattgcctgcatccgaccttggaggtgaagggctgcttaagtgccctgcatcaagcttttgatttccatcgacaacgccgaatcgatacgacttttttcagtacacgtcaattgtttatgttcggaaaatttctttattcatgactcgaaaaacgtggcgcgggaaaattttgcttttggcgcgagaagtaaaatttttacgcgccagaacgaaaaaaatctcgcgccacctcttccgaaaaacacgagccgcagatgtgtaaaaactcgcacagaaaaagttgatgtgggtacaaaaagaagaagagagaggaggagagccccgatatccgataaaactactcaccagataccttccgaaaacataaatatcggatctgcatcaatagtgtcctaaaagtcagtttttggcaatagaaaggagaggaacttcccggtgtctctccttcgttgtgttatcagagtctccttgggccaataatataagcctgcttgcccaagttgttcgcttgtagcctcgccccttgattaagaatctctcggcagagttccaagtagacaagcacagcaatcctatctactacaaaaacaacatacgatttttttcagtacaggtcatttcgataatttgtgtctatatttgacagtagtagcacgaattttccatcgggaaaaaagagtgctgtggcgtttaattagagatactaactcatgtatgggaactctctgtagatatgcaatctaagtttgcaataccaaggcggacagatctcatcaaaaacaaagcgtatt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PG1328:PG1330|PG1328:PG1330:CoA ligase family protein:large conductance mechanosensitive channel protein:<-->:1408771..1409805 1035 tatgtaatgctttaagaaatcaggtttgaacccttttccgcaaagaaagagaggcgggatattacagtctgatggattcccctctttttgcgggctcacaatattacatcctttttcctacacaacgaaataattttgttgtgaaaaacaagcaaaaacactgaaaattacctacgtcgtctaccggggggctttgcctgcctttctctgctgacggatgcttacaggcgccggatcgtgggtcattgcctgcatccgaccttggaggtgaagggctgcttaagtgccctgcatcaagcttttgatttccatcgacaacgccgaatcgatacgacttttttcagtacacgtcaattgtttatgttcggaaaatttctttattcatgactcgaaaaacgtggcgcgggaaaattttgcttttggcgcgagaagtaaaatttttacgcgccagaacgaaaaaaatctcgcgccacctcttccgaaaaacacgagccgcagatgtgtaaaaactcgcacagaaaaagttgatgtgggtacaaaaagaagaagagagaggaggagagccccgatatccgataaaactactcaccagataccttccgaaaacataaatatcggatctgcatcaatagtgtcctaaaagtcagtttttggcaatagaaaggagaggaacttcccggtgtctctccttcgttgtgttatcagagtctccttgggccaataatataagcctgcttgcccaagttgttcgcttgtagcctcgccccttgattaagaatctctcggcagagttccaagtagacaagcacagcaatcctatctactacaaaaacaacatacgatttttttcagtacaggtcatttcgataatttgtgtctatatttgacagtagtagcacgaattttccatcgggaaaaaagagtgctgtggcgtttaattagagatactaactcatgtatgggaactctctgtagatatgcaatctaagtttgcaataccaaggcggacagatctcatcaaaaacaaagcgtatt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 18 Min: 190 Max: 402 Len: 213 Subject: gi|34539888|ref|NP_904367.1| ISPg5 transposase Orf2 [Porphyromonas gingivalis W83] HSP 1 e-value: 1.0E-15 bit: 80.9 Len: 213 Query Start:190 Query End:402 Subject Strand: null Subject Start: 130 Subject End: 203 ............................................................................................................................................................................................. G F A C L S L L T D A Y R R R I V G H C L H P T L E V K G C L S A L H Q A F D F H R Q R R I D T T - - - F F S T R Q L F M F G K F L Y S * L E K R G ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ............................................................................................................................................................................................. G F A Y L S L L T D A Y S R C I V G Y C L H P T L E V E G C L N A L H Q A F A F Y D Q H Q I D T T N M I H H S D R G I Q Y A G K S Y T D L L H G R G ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: gi|34541287|ref|NP_905766.1| ISPg5, transposase Orf2 [Porphyromonas gingivalis W83] HSP 1 e-value: 1.0E-15 bit: 80.9 Len: 213 Query Start:190 Query End:402 Subject Strand: null Subject Start: 130 Subject End: 203 ............................................................................................................................................................................................. G F A C L S L L T D A Y R R R I V G H C L H P T L E V K G C L S A L H Q A F D F H R Q R R I D T T - - - F F S T R Q L F M F G K F L Y S * L E K R G ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ............................................................................................................................................................................................. G F A Y L S L L T D A Y S R C I V G Y C L H P T L E V E G C L N A L H Q A F A F Y D Q H Q I D T T N M I H H S D R G I Q Y A G K S Y T D L L H G R G ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: gi|34541705|ref|NP_906184.1| ISPg5, transposase Orf2 [Porphyromonas gingivalis W83] HSP 1 e-value: 1.0E-15 bit: 80.9 Len: 213 Query Start:190 Query End:402 Subject Strand: null Subject Start: 130 Subject End: 203 ............................................................................................................................................................................................. G F A C L S L L T D A Y R R R I V G H C L H P T L E V K G C L S A L H Q A F D F H R Q R R I D T T - - - F F S T R Q L F M F G K F L Y S * L E K R G ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ............................................................................................................................................................................................. G F A Y L S L L T D A Y S R C I V G Y C L H P T L E V E G C L N A L H Q A F A F Y D Q H Q I D T T N M I H H S D R G I Q Y A G K S Y T D L L H G R G ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: gi|34539915|ref|NP_904394.1| ISPg5 transposase Orf2 [Porphyromonas gingivalis W83] HSP 1 e-value: 4.0E-15 bit: 79.3 Len: 213 Query Start:190 Query End:402 Subject Strand: null Subject Start: 130 Subject End: 203 ............................................................................................................................................................................................. G F A C L S L L T D A Y R R R I V G H C L H P T L E V K G C L S A L H Q A F D F H R Q R R I D T T - - - F F S T R Q L F M F G K F L Y S * L E K R G ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ............................................................................................................................................................................................. G F A Y L S L L T D A Y S R C I V G Y C L H P T L E V E G C L N A L H Q A F A F Y D Q H Q I D T S N M I H H S D R G I Q Y A G K S Y T D L L H G R G ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: gi|34540248|ref|NP_904727.1| ISPg5, transposase Orf2 [Porphyromonas gingivalis W83] HSP 1 e-value: 4.0E-15 bit: 79.3 Len: 213 Query Start:190 Query End:402 Subject Strand: null Subject Start: 130 Subject End: 203 ............................................................................................................................................................................................. G F A C L S L L T D A Y R R R I V G H C L H P T L E V K G C L S A L H Q A F D F H R Q R R I D T T - - - F F S T R Q L F M F G K F L Y S * L E K R G ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ............................................................................................................................................................................................. G F A Y L S L L T D A Y S R C I V G Y C L H P T L E V E G C L N A L H Q A F A F Y D Q H Q I D T S N M I H H S D R G I Q Y A G K S Y T D L L H G R G ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: gi|34540277|ref|NP_904756.1| ISPg5, transposase Orf2 [Porphyromonas gingivalis W83] HSP 1 e-value: 4.0E-15 bit: 79.3 Len: 213 Query Start:190 Query End:402 Subject Strand: null Subject Start: 130 Subject End: 203 ............................................................................................................................................................................................. G F A C L S L L T D A Y R R R I V G H C L H P T L E V K G C L S A L H Q A F D F H R Q R R I D T T - - - F F S T R Q L F M F G K F L Y S * L E K R G ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ............................................................................................................................................................................................. G F A Y L S L L T D A Y S R C I V G Y C L H P T L E V E G C L N A L H Q A F A F Y D Q H Q I D T S N M I H H S D R G I Q Y A G K S Y T D L L H G R G ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: gi|34540399|ref|NP_904878.1| ISPg5, transposase Orf2 [Porphyromonas gingivalis W83] HSP 1 e-value: 4.0E-15 bit: 79.3 Len: 213 Query Start:190 Query End:402 Subject Strand: null Subject Start: 130 Subject End: 203 ............................................................................................................................................................................................. G F A C L S L L T D A Y R R R I V G H C L H P T L E V K G C L S A L H Q A F D F H R Q R R I D T T - - - F F S T R Q L F M F G K F L Y S * L E K R G ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ............................................................................................................................................................................................. G F A Y L S L L T D A Y S R C I V G Y C L H P T L E V E G C L N A L H Q A F A F Y D Q H Q I D T S N M I H H S D R G I Q Y A G K S Y T D L L H G R G ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: gi|34541341|ref|NP_905820.1| ISPg5, transposase Orf2 [Porphyromonas gingivalis W83] HSP 1 e-value: 4.0E-15 bit: 79.3 Len: 213 Query Start:190 Query End:402 Subject Strand: null Subject Start: 130 Subject End: 203 ............................................................................................................................................................................................. G F A C L S L L T D A Y R R R I V G H C L H P T L E V K G C L S A L H Q A F D F H R Q R R I D T T - - - F F S T R Q L F M F G K F L Y S * L E K R G ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ............................................................................................................................................................................................. G F A Y L S L L T D A Y S R C I V G Y C L H P T L E V E G C L N A L H Q A F A F Y D Q H Q I D T S N M I H H S D R G I Q Y A G K S Y T D L L H G R G ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: gi|34541641|ref|NP_906120.1| ISPg5, transposase Orf2 [Porphyromonas gingivalis W83] HSP 1 e-value: 4.0E-15 bit: 79.3 Len: 213 Query Start:190 Query End:402 Subject Strand: null Subject Start: 130 Subject End: 203 ............................................................................................................................................................................................. G F A C L S L L T D A Y R R R I V G H C L H P T L E V K G C L S A L H Q A F D F H R Q R R I D T T - - - F F S T R Q L F M F G K F L Y S * L E K R G ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ............................................................................................................................................................................................. G F A Y L S L L T D A Y S R C I V G Y C L H P T L E V E G C L N A L H Q A F A F Y D Q H Q I D T S N M I H H S D R G I Q Y A G K S Y T D L L H G R G ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: gi|34540696|ref|NP_905175.1| ISPg5, transposase Orf2 [Porphyromonas gingivalis W83] HSP 1 e-value: 5.0E-15 bit: 79.0 Len: 147 Query Start:190 Query End:336 Subject Strand: null Subject Start: 130 Subject End: 178 ............................................................................................................................................................................................. G F A C L S L L T D A Y R R R I V G H C L H P T L E V K G C L S A L H Q A F D F H R Q R R I D T T ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ............................................................................................................................................................................................. G F A Y L S L L T D A Y S R C I V G Y C L H P T L E V E G C L N A L H Q A F A F Y D Q H Q I D T S ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: gi|34541096|ref|NP_905575.1| ISPg5, transposase Orf2 [Porphyromonas gingivalis W83] HSP 1 e-value: 5.0E-15 bit: 79.0 Len: 147 Query Start:190 Query End:336 Subject Strand: null Subject Start: 130 Subject End: 178 ............................................................................................................................................................................................. G F A C L S L L T D A Y R R R I V G H C L H P T L E V K G C L S A L H Q A F D F H R Q R R I D T T ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ............................................................................................................................................................................................. G F A Y L S L L T D A Y S R C I V G Y C L H P T L E V E G C L N A L H Q A F A F Y D Q H Q I D T S ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_A0PA68 Cluster: Transposase Orf2; n=10; Porphyromonas gingivalis|Rep: Transposase Orf2 - Porphyromonas gingivalis (Bacteroides gingivalis) HSP 1 e-value: 5.0E-15 bit: 79.0 Len: 147 Query Start:190 Query End:336 Subject Strand: null Subject Start: 130 Subject End: 178 ............................................................................................................................................................................................. G F A C L S L L T D A Y R R R I V G H C L H P T L E V K G C L S A L H Q A F D F H R Q R R I D T T ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ............................................................................................................................................................................................. G F A Y L S L L T D A Y S R C I V G Y C L H P T L E V E G C L N A L H Q A F A F Y D Q H Q I D T S ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: IS|ISPg5.aa2 HSP 1 e-value: 5.0E-15 bit: 79.0 Len: 147 Query Start:190 Query End:336 Subject Strand: null Subject Start: 130 Subject End: 178 ............................................................................................................................................................................................. G F A C L S L L T D A Y R R R I V G H C L H P T L E V K G C L S A L H Q A F D F H R Q R R I D T T ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ............................................................................................................................................................................................. G F A Y L S L L T D A Y S R C I V G Y C L H P T L E V E G C L N A L H Q A F A F Y D Q H Q I D T S ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: gi|29347547|ref|NP_811050.1| transposase [Bacteroides thetaiotaomicron VPI-5482] HSP 1 e-value: 9.0E-6 bit: 48.1 Len: 141 Query Start:190 Query End:330 Subject Strand: null Subject Start: 89 Subject End: 135 ............................................................................................................................................................................................. G F A C L S L L T D A Y R R R I V G H C L H P T L E V K G C L S A L H Q A F D F H R Q R R I D ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ............................................................................................................................................................................................. G W A Y L S L L T D A S S R A I V G Y A L Y K T L E T E G P L K A L E M A I S F Y E K Y H I D ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: gi|29347967|ref|NP_811470.1| transposase [Bacteroides thetaiotaomicron VPI-5482] HSP 1 e-value: 9.0E-6 bit: 48.1 Len: 141 Query Start:190 Query End:330 Subject Strand: null Subject Start: 89 Subject End: 135 ............................................................................................................................................................................................. G F A C L S L L T D A Y R R R I V G H C L H P T L E V K G C L S A L H Q A F D F H R Q R R I D ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ............................................................................................................................................................................................. G W A Y L S L L T D A S S R A I V G Y A L Y K T L E T E G P L K A L E M A I S F Y E K Y H I D ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: gi|29349114|ref|NP_812617.1| transposase [Bacteroides thetaiotaomicron VPI-5482] HSP 1 e-value: 9.0E-6 bit: 48.1 Len: 141 Query Start:190 Query End:330 Subject Strand: null Subject Start: 89 Subject End: 135 ............................................................................................................................................................................................. G F A C L S L L T D A Y R R R I V G H C L H P T L E V K G C L S A L H Q A F D F H R Q R R I D ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ............................................................................................................................................................................................. G W A Y L S L L T D A S S R A I V G Y A L Y K T L E T E G P L K A L E M A I S F Y E K Y H I D ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: gi|29349233|ref|NP_812736.1| transposase [Bacteroides thetaiotaomicron VPI-5482] HSP 1 e-value: 9.0E-6 bit: 48.1 Len: 141 Query Start:190 Query End:330 Subject Strand: null Subject Start: 89 Subject End: 135 ............................................................................................................................................................................................. G F A C L S L L T D A Y R R R I V G H C L H P T L E V K G C L S A L H Q A F D F H R Q R R I D ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ............................................................................................................................................................................................. G W A Y L S L L T D A S S R A I V G Y A L Y K T L E T E G P L K A L E M A I S F Y E K Y H I D ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: gi|29349698|ref|NP_813201.1| transposase [Bacteroides thetaiotaomicron VPI-5482] HSP 1 e-value: 9.0E-6 bit: 48.1 Len: 141 Query Start:190 Query End:330 Subject Strand: null Subject Start: 89 Subject End: 135 ............................................................................................................................................................................................. G F A C L S L L T D A Y R R R I V G H C L H P T L E V K G C L S A L H Q A F D F H R Q R R I D ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ............................................................................................................................................................................................. G W A Y L S L L T D A S S R A I V G Y A L Y K T L E T E G P L K A L E M A I S F Y E K Y H I D ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Find nr database================================================ Query_seq: PG1328:PG1330|PG1328:PG1330:CoA ligase family protein:large conductance mechanosensitive channel protein:<-->:1408771..1409805 1035 tatgtaatgctttaagaaatcaggtttgaacccttttccgcaaagaaagagaggcgggatattacagtctgatggattcccctctttttgcgggctcacaatattacatcctttttcctacacaacgaaataattttgttgtgaaaaacaagcaaaaacactgaaaattacctacgtcgtctaccggggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcgggaaaattttgcttttggcgcgagaagtaaaatttttacgcgccagaacgaaaaaaatctcgcgccacctcttccgaaaaacacgagccgcagatgtgtaaaaactcgcacagaaaaagttgatgtgggtacaaaaagaagaagagagaggaggagagccccgatatccgataaaactactcaccagataccttccgaaaacataaatatcggatctgcatcaatagtgtcctaaaagtcagtttttggcaatagaaaggagaggaacttcccggtgtctctccttcgttgtgttatcagagtctccttggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatcctatctactacaaaaacaacatacgatttttttcagtacaggtcatttcgataatttgtgtctatatttgacagtagtagcacgaattttccatcgggaaaaaagagtgctgtggcgtttaattagagatactaactcatgtatgggaactctctgtagatatgcaatctaagtttgcaataccaaggcggacagatctcatcaaaaacaaagcgtatt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 1 Min: 404 Max: 622 Len: 219 Subject: UniRef90_Q7MSZ8 Cluster: Hypothetical protein; n=1; Porphyromonas gingivalis|Rep: Hypothetical protein - Porphyromonas gingivalis (Bacteroides gingivalis) HSP 1 e-value: 4.0E-25 bit: 118.0 Len: 219 Query Start:404 Query End:622 Subject Strand: null Subject Start: 7 Subject End: 77 ................................................................................................................................................................................................................................................................................................................................................................................................................... R S D I Y V F G R Y L V S S F I G Y R G S P P L S S S F C T H I N F F C A S F Y T S A A R V F R K R W R E I F F V L A R K N F T S R A K S K I F P ............................................................................................................................................................................................................................................................................................................................................................................................................................. ................................................................................................................................................................................................................................................................................................................................................................................................................... R S D I Y V F G R Y P M S S F I G Y P G L S - - S S S F C T H I N F F Y A S S C T S T A R V F R K K W R E I F F V L A R K N F T S R A K S K I F P ............................................................................................................................................................................................................................................................................................................................................................................................................................. tatgtaatgctttaagaaatcaggtttgaacccttttccgcaaagaaagagaggcgggatattacagtctgatggattcccctctttttgcgggctcacaatattacatcctttttcctacacaacgaaataattttgttgtgaaaaacaagcaaaaacactgaaaattacctacgtcgtctaccggggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcatcaatagtgtcctaaaagtcagtttttggcaatagaaaggagaggaacttcccggtgtctctccttcgttgtgttatcagagtctccttggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatcctatctactacaaaaacaacatacgatttttttcagtacaggtcatttcgataatttgtgtctatatttgacagtagtagcacgaattttccatcgggaaaaaagagtgctgtggcgtttaattagagatactaactcatgtatgggaactctctgtagatatgcaatctaagtttgcaataccaaggcggacagatctcatcaaaaacaaagcgtatt Predict ORF larger than 30AA ================================================ Protein_Len: 35 Strand: + Start: 26 End: 130 ......................... M N P F P Q R K R G G I L Q S D G F P S F C G L T I L H P F S Y T T K ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 31 Strand: + Start: 69 End: 161 .................................................................... M M D S P L F A G S Q Y Y I L F P T Q R N N F V V K N K Q K H .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 35 Strand: + Start: 198 End: 302 ..................................................................................................................................................................................................... M P F S A D G C L Q A P D R G S L P A S D L G G E G L L K C P A S S F ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 59 Strand: + Start: 208 End: 384 ............................................................................................................................................................................................................... M L T D A Y R R R I V G H C L H P T L E V K G C L S A L H Q A F D F H R Q R R I D T T F F S T R Q L F M F G K F L Y S ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 50 Strand: + Start: 354 End: 503 ................................................................................................................................................................................................................................................................................................................................................................. M V Y V R K I S L F M T R K T W R G K I L L L A R E V K F L R A R T K K I S R H L F R K T R A A D V .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 284 End: 637 ........................................................................................................................................................................................................................................................................................... M P C I K L L I S I D N A E S I R L F S V H V N C L C S E N F F I H D S K N V A R E N F A F G A R S K I F T R Q N E K N .............................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 35 Strand: + Start: 651 End: 755 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M A I E R R G T S R C L S F V V L S E S P W A N N I S L L A Q V V R L ........................................................................................................................................................................................................................................................................................ Protein_Len: 39 Strand: + Start: 768 End: 884 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M I K N L S A E F Q V D K H S N P I Y Y K N N I R F F S V Q V I S I I C V Y I ....................................................................................................................................................... Protein_Len: 48 Strand: + Start: 842 End: 985 ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M F F S T G H F D N L C L Y L T V V A R I F H R E K R V L W R L I R D T N S C M G T L C R Y A I .................................................. Protein_Len: 30 Strand: + Start: 945 End: 1034 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ M L T H V W E L S V D M Q S K F A I P R R T D L I K N K A Y . Protein_Len: 41 Strand: - Start: 862 End: 984 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. K S L K H R Y K V T T A R I K W R S F L T S H R K I L S V L E H I P V R Q L Y A M ................................................... Protein_Len: 37 Strand: - Start: 705 End: 815 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ L R R P G I I Y A Q K G L N N A Q L R A G Q N L I E R C L E L Y V L V A M ............................................................................................................................................................................................................................ Protein_Len: 58 Strand: - Start: 647 End: 820 ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... N K A I S L L P V E R H R E K T T N D S D G Q A L L I L R S A W T T R K Y G R G K I L F R E A S N W T S L C L L G M ....................................................................................................................................................................................................................... Protein_Len: 43 Strand: - Start: 444 End: 572 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................... A G S R F F D R A V E E S F C S G C I H L F E C L F L Q H P Y L F F F L S S S L G S M ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 385 End: 570 ................................................................................................................................................................................................................................................................................................................................................................................................ F F T A R S F K A K P A L L L I K V R W F S F F R A G G R G F F V L R L H T F V R V S F T S T P V F L L L S L L L A G M ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 60 Strand: - Start: 362 End: 613 ......................................................................................................................................................................................................................................................................................................................................................................... F N K R A L V F F I E R W R K R F V R A A S T Y F S A C F F N I H T C F S S S L P P S G R Y G I F S S V L Y R G F V Y M ...................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 33 Strand: - Start: 283 End: 381 .......................................................................................................................................................................................................................................................................................... T G Q M L S K I E M S L A S D I R S K E T C T L Q K H E S F K K M .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 34 Strand: - Start: 1 End: 102 I Y H K L F D P K F G K G C L F L P P I N C D S P N G E K Q P S V M ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... tatgtaatgctttaagaaatcaggtttgaacccttttccgcaaagaaagagaggcgggatattacagtctgatggattcccctctttttgcgggctcacaatattacatcctttttcctacacaacgaaataattttgttgtgaaaaacaagcaaaaacactgaaaattacctacgtcgtctaccggggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcatcaatagtgtcctaaaagtcagtttttggcaatagaaaggagaggaacttcccggtgtctctccttcgttgtgttatcagagtctccttggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatcctatctactacaaaaacaacatacgatttttttcagtacaggtcatttcgataatttgtgtctatatttgacagtagtagcacgaattttccatcgggaaaaaagagtgctgtggcgtttaattagagatactaactcatgtatgggaactctctgtagatatgcaatctaagtttgcaataccaaggcggacagatctcatcaaaaacaaagcgtatt Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ tatgtaatgctttaagaaatcaggtttgaacccttttccgcaaagaaagagaggcgggatattacagtctgatggattcccctctttttgcgggctcacaatattacatcctttttcctacacaacgaaataattttgttgtgaaaaacaagcaaaaacactgaaaattacctacgtcgtctaccggggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcatcaatagtgtcctaaaagtcagtttttggcaatagaaaggagaggaacttcccggtgtctctccttcgttgtgttatcagagtctccttggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatcctatctactacaaaaacaacatacgatttttttcagtacaggtcatttcgataatttgtgtctatatttgacagtagtagcacgaattttccatcgggaaaaaagagtgctgtggcgtttaattagagatactaactcatgtatgggaactctctgtagatatgcaatctaagtttgcaataccaaggcggacagatctcatcaaaaacaaagcgtatt Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 73 HP_score: -5.2 Tail_Score: -4.63527 Start: 397 End: 451 Full_Region: gagatttttttcgtt ctggcgcgtaaaaattttacttct cgcgcc aaaagcaaaattttcccgcgccacg tttttcgagtcatga ............................................................................................................................................................................................................................................................................................................................................................................................................ctggcgcgtaaaaattttacttctcgcgccaaaagcaaaattttcccgcgccacg........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ TransTerm Strand: - Conf: 55 HP_score: -5.4 Tail_Score: -3.37634 Start: 398 End: 451 Full_Region: gagatttttttcgtt ctggcgcgtaaaaattttacttct cgcgcc aaaagcaaaattttcccgcgccac gtttttcgagtcatg .............................................................................................................................................................................................................................................................................................................................................................................................................ctggcgcgtaaaaattttacttctcgcgccaaaagcaaaattttcccgcgccac........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ TransTerm Strand: - Conf: 66 HP_score: -8.9 Tail_Score: -2.62098 Start: 399 End: 450 Full_Region: agatttttttcgttc tggcgcgtaaaaattttacttct cgcgcc aaaagcaaaattttcccgcgcca cgtttttcgagtcat ..............................................................................................................................................................................................................................................................................................................................................................................................................tggcgcgtaaaaattttacttctcgcgccaaaagcaaaattttcccgcgcca......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 58 HP_score: -3.2 Tail_Score: -4.1891 Start: 664 End: 689 Full_Region: tgataacacaacgaa ggagagacac cgggaa gttcctctcc tttctattgccaaaa .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ggagagacaccgggaagttcctctcc.......................................................................................................................................................................................................................................................................................................................................................... Find igs database================================================ Query_seq: PG1328:PG1330|PG1328:PG1330:CoA ligase family protein:large conductance mechanosensitive channel protein:<-->:1408771..1409805 1035 tatgtaatgctttaagaaatcaggtttgaacccttttccgcaaagaaagagaggcgggatattacagtctgatggattcccctctttttgcgggctcacaatattacatcctttttcctacacaacgaaataattttgttgtgaaaaacaagcaaaaacactgaaaattacctacgtcgtctaccggggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcatcaatagtgtcctaaaagtcagtttttggcaatagaaaggagaggaacttcccggtgtctctccttcgttgtgttatcagagtctccttggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatcctatctactacaaaaacaacatacgatttttttcagtacaggtcatttcgataatttgtgtctatatttgacagtagtagcacgaattttccatcgggaaaaaagagtgctgtggcgtttaattagagatactaactcatgtatgggaactctctgtagatatgcaatctaagtttgcaataccaaggcggacagatctcatcaaaaacaaagcgtatt Intra-Species Hit: Count: 1 Min: 1 Max: 1035 Len: 1035 Subject: NC_002950_PG1328_PG1330|CoA ligase family protein:large conductance mechanosensitive channel protein|NEGATIVE:POSITIVE|[1408771,1409805]|1035 HSP 1 e-value: 1.0E-110 bit: 400.0 Len: 223 Query Start:813 Query End:1035 Subject Strand: POSITIVE Subject Start: 813 Subject End: 1035 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................aatcctatctactacaaaaacaacatacgannnnnnncagtacaggtcatttcgataatttgtgtctatatttgacagtagtagcacgaattttccatcgggaaaaaagagtgctgtggcgtttaattagagatactaactcatgtatgggaactctctgtagatatgcaatctaagtttgcaataccaaggcggacagatctcatcaaaaacaaagcgtatt ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................aatcctatctactacaaaaacaacatacgatttttttcagtacaggtcatttcgataatttgtgtctatatttgacagtagtagcacgaattttccatcgggaaaaaagagtgctgtggcgtttaattagagatactaactcatgtatgggaactctctgtagatatgcaatctaagtttgcaataccaaggcggacagatctcatcaaaaacaaagcgtatt HSP 2 e-value: 1.0E-100 bit: 367.0 Len: 185 Query Start:1 Query End:185 Subject Strand: POSITIVE Subject Start: 1 Subject End: 185 tatgtaatgctttaagaaatcaggtttgaacccttttccgcaaagaaagagaggcgggatattacagtctgatggattcccctctttttgcgggctcacaatattacatcctttttcctacacaacgaaataattttgttgtgaaaaacaagcaaaaacactgaaaattacctacgtcgtctacc.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. tatgtaatgctttaagaaatcaggtttgaacccttttccgcaaagaaagagaggcgggatattacagtctgatggattcccctctttttgcgggctcacaatattacatcctttttcctacacaacgaaataattttgttgtgaaaaacaagcaaaaacactgaaaattacctacgtcgtctacc.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. HSP 3 e-value: 7.0E-44 bit: 180.0 Len: 91 Query Start:624 Query End:714 Subject Strand: POSITIVE Subject Start: 624 Subject End: 714 ...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................catcaatagtgtcctaaaagtcagtttttggcaatagaaaggagaggaacttcccggtgtctctccttcgttgtgttatcagagtctcctt................................................................................................................................................................................................................................................................................................................................. ...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................catcaatagtgtcctaaaagtcagtttttggcaatagaaaggagaggaacttcccggtgtctctccttcgttgtgttatcagagtctcctt................................................................................................................................................................................................................................................................................................................................. Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAUGUAAUGCUUUAAGAAAUCAGGUUUGAACCCUUUUCCGCAAAGAAAGAGAGGCGGGAUAUUACAGUCUGAUGGAUUCCCCUCUUUUUGCGGGCUCACAAUAUUACAUCCUUUUUCCUACACAACGAAAUAAUUUUGUUGUGAAAAACAAGCAAAAACACUGAAAAUUACCUACGUCGUCUACCGGGGGGCUUUGCCUGCCUUUCUCUGCUGACGGAUGCUUACAGGCGCCGGAUCGUGGGUCAUUGCCUGCAUCCGACCUUGGAGGUGAAGGGCUGCUUAAGUGCCCUGCAUCAAGCUUUUGAUUUCCAUCGACAACGCCGAAUCGAUACGACUUUUUUCAGUACACGUCAAUUGUUUAUGUUCGGAAAAUUUCUUUAUUCAUGACUCGAAAAACGUGGCGCGGGAAAAUUUUGCUUUUGGCGCGAGAAGUAAAAUUUUUACGCGCCAGAACGAAAAAAAUCUCGCGCCACCUCUUCCGAAAAACACGAGCCGCAGAUGUGUAAAAACUCGCACAGAAAAAGUUGAUGUGGGUACAAAAAGAAGAAGAGAGAGGAGGAGAGCCCCGAUAUCCGAUAAAACUACUCACCAGAUACCUUCCGAAAACAUAAAUAUCGGAUCUGCAUCAAUAGUGUCCUAAAAGUCAGUUUUUGGCAAUAGAAAGGAGAGGAACUUCCCGGUGUCUCUCCUUCGUUGUGUUAUCAGAGUCUCCUUGGGCCAAUAAUAUAAGCCUGCUUGCCCAAGUUGUUCGCUUGUAGCCUCGCCCCUUGAUUAAGAAUCUCUCGGCAGAGUUCCAAGUAGACAAGCACAGCAAUCCUAUCUACUACAAAAACAACAUACGAUUUUUUUCAGUACAGGUCAUUUCGAUAAUUUGUGUCUAUAUUUGACAGUAGUAGCACGAAUUUUCCAUCGGGAAAAAAGAGUGCUGUGGCGUUUAAUUAGAGAUACUAACUCAUGUAUGGGAACUCUCUGUAGAUAUGCAAUCUAAGUUUGCAAUACCAAGGCGGACAGAUCUCAUCAAAAACAAAGCGUAUU ......(((((((........(((((((........(((((....(((((((((.(((((....((......)).))))))))))))))(((((((.((((....(((..((((.....(((((((((.....(((((((((.((((((..((....((((((............((((..((....((((((((.(((.(((((((((.((....(.(((((((.((((.(((((.(..(((....)))..))))))....(((((((.(((((((......((((...))))..))))))).))))))).......)))).........((((((((((...((((((((....(((..(((((((((..........(((.......)))....(((((((((((...(((((.((((((((((.((((......)))).)))))))))))))))....)))))))))))...))))))...)))..)))....))))))))............))))))))))..))))))))....))....))))))))))))))))))))..))..))))............((((.....(((((...........)))))))))......)))))).......))..)))))).))))))))).((((((..(((....)))..)))))).)))))))))....))))....(((((((.........(((....)))))))))).)))....)))))))).)))..((((.......((((..(((.((((((((...(((((...(((((((.((....(((((((..........(((((......)).)))...((((....((((.....))))......)))).)))))))......((((((....))))))..)).)))))))..)))))....(((.......))).......))))))))))).)))).(((((.......)))))....))))))))))))))))..........)))))))... (-321.33) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AAUACGCUUUGUUUUUGAUGAGAUCUGUCCGCCUUGGUAUUGCAAACUUAGAUUGCAUAUCUACAGAGAGUUCCCAUACAUGAGUUAGUAUCUCUAAUUAAACGCCACAGCACUCUUUUUUCCCGAUGGAAAAUUCGUGCUACUACUGUCAAAUAUAGACACAAAUUAUCGAAAUGACCUGUACUGAAAAAAAUCGUAUGUUGUUUUUGUAGUAGAUAGGAUUGCUGUGCUUGUCUACUUGGAACUCUGCCGAGAGAUUCUUAAUCAAGGGGCGAGGCUACAAGCGAACAACUUGGGCAAGCAGGCUUAUAUUAUUGGCCCAAGGAGACUCUGAUAACACAACGAAGGAGAGACACCGGGAAGUUCCUCUCCUUUCUAUUGCCAAAAACUGACUUUUAGGACACUAUUGAUGCAGAUCCGAUAUUUAUGUUUUCGGAAGGUAUCUGGUGAGUAGUUUUAUCGGAUAUCGGGGCUCUCCUCCUCUCUCUUCUUCUUUUUGUACCCACAUCAACUUUUUCUGUGCGAGUUUUUACACAUCUGCGGCUCGUGUUUUUCGGAAGAGGUGGCGCGAGAUUUUUUUCGUUCUGGCGCGUAAAAAUUUUACUUCUCGCGCCAAAAGCAAAAUUUUCCCGCGCCACGUUUUUCGAGUCAUGAAUAAAGAAAUUUUCCGAACAUAAACAAUUGACGUGUACUGAAAAAAGUCGUAUCGAUUCGGCGUUGUCGAUGGAAAUCAAAAGCUUGAUGCAGGGCACUUAAGCAGCCCUUCACCUCCAAGGUCGGAUGCAGGCAAUGACCCACGAUCCGGCGCCUGUAAGCAUCCGUCAGCAGAGAAAGGCAGGCAAAGCCCCCCGGUAGACGACGUAGGUAAUUUUCAGUGUUUUUGCUUGUUUUUCACAACAAAAUUAUUUCGUUGUGUAGGAAAAAGGAUGUAAUAUUGUGAGCCCGCAAAAAGAGGGGAAUCCAUCAGACUGUAAUAUCCCGCCUCUCUUUCUUUGCGGAAAAGGGUUCAAACCUGAUUUCUUAAAGCAUUACAUA .....(((((((((((((((((((((.((.((...(((((.((((.......))))))))).....((((((((........((((((.....))))))....((.((((((.((((((((((....))))))......(((((((.(((.......)))..........((((..((..((((.((......))))))))..)))).)))))))..)))).))))))))..........)))))))))).)).))).)))).))))).))))))))).(((((((((...((((((((((....))).........)))))))..(((.((((.........(((((((((..((......))..)))))))))..((((((.(((((((.((.......(((((..(((((...(((((...........)))))..))))))))))))))))))).(((..((((((((..((((((((.(((((.((......(((................((.((((((.(((((((((.....(((.(((((...(((((((((.((((((((.((...((((.(((.(((((((..((........))..)))))))..)))))))...)).)))))))).))))))))).)))))..(((....))).)))..((........))..))))).....)))).)))))).))...((((((((((.(((...(((...(((((.((.(((((.........))))).))..(((......)))..)))))..))).))))))..))))))).....)))......)).))))).))).)))...))..))))))))..)))....))))))..)))).))))))))))))((((((((((...........)))))).))))......(((((((....((((.(((((((((((((((........................))))))))..)))))))....((((....)))).....))))....))))))). (-307.47) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 1015 100 51 191 142 NC_002950:PG1328|5end_CoA_ligase_family_protein_1408680..1408910_NEGATIVE 695 610 561 61 11 NC_002950:PG2212|5end_hypothetical_protein_2324767..2324997_NEGATIVE 553 430 392 163 125 NC_002950:PG0081|5end_hypothetical_protein_93805..94035_POSITIVE 537 430 388 48 7 NC_002950:PG1799|5end_hypothetical_protein_1894499..1894729_POSITIVE 508 470 421 181 132 NC_002950:PG2063|5end_hypothetical_protein_2160596..2160826_NEGATIVE 507 430 381 130 81 NC_002950:PG0132|5end_hypothetical_protein_152879..153109_POSITIVE 502 470 421 110 61 NC_002950:PG1980|5end_hypothetical_protein_2067930..2068160_NEGATIVE 493 490 444 127 82 NC_002950:PG1617|5end_hypothetical_protein_1697755..1697985_NEGATIVE 481 470 421 74 25 NC_002950:PG2064|5end_hypothetical_protein_2160550..2160780_POSITIVE 475 429 381 94 42 NC_002950:PG0007|5end_hypothetical_protein_6913..7143_NEGATIVE 471 490 446 133 84 NC_002950:PG0174|5end_pyridine_nucleotide-disulphide_oxidoreductase_family_protein_197628..197858_NEGATIVE 465 423 384 135 94 NC_002950:PG0661|5end_hypothetical_protein_709853..710083_NEGATIVE 457 280 232 72 13 NC_002950:PG1988|5end_hypothetical_protein_2078867..2079097_NEGATIVE 436 220 171 120 61 NC_002950:PG0605|5end_hypothetical_protein_662406..662636_NEGATIVE 433 497 463 34 1 NC_002950:PG1655|5end_hypothetical_protein_1737095..1737325_POSITIVE 433 211 172 172 127 NC_002950:PG0283|5end_efflux_transporter,_MFP_component,_RND_family_318245..318475_NEGATIVE 421 500 464 191 147 NC_002950:PG2202|5end_Holliday_junction_resolvase-like_protein_2309933..2310163_NEGATIVE 420 249 201 66 14 NC_002950:PG1778|5end_hypothetical_protein_1867054..1867284_POSITIVE 415 223 185 60 18 NC_002950:PG0349|5end_hydrolase,_haloacid_dehalogenase-like_family_384459..384689_POSITIVE 414 248 201 71 31 NC_002950:PG1731|5end_3-dehydroquinate_dehydratase_1820103..1820333_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 698 410 362 151 101 NC_002950:PG2212|3end_hypothetical_protein_2324483..2324633_NEGATIVE 491 473 431 51 9 NC_002950:PG0542|3end_hypothetical_protein_595377..595527_NEGATIVE 437 270 227 39 1 NC_002950:PG1989|3end_hypothetical_protein_2078883..2079033_NEGATIVE 437 353 312 66 25 NC_002950:PG1711|3end_alpha-1,2-mannosidase_family_protein_1796652..1796802_NEGATIVE 436 220 171 75 16 NC_002950:PG0606|3end_hypothetical_protein_662451..662601_NEGATIVE 432 772 731 148 98 NC_002950:PG1134|3end_thioredoxin_reductase_1215371..1215521_POSITIVE 431 268 226 61 13 NC_002950:PG1118|3end_clpB_protein_1192083..1192233_NEGATIVE 429 250 202 123 70 NC_002950:PG1675|3end_hypothetical_protein_1760360..1760510_POSITIVE 425 490 444 102 57 NC_002950:PG0732|3end_hypothetical_protein_783018..783168_POSITIVE 420 229 183 74 25 NC_002950:PG1410|3end_hypothetical_protein_1493436..1493586_POSITIVE 414 299 260 35 1 NC_002950:PG1256|3end_ribonuclease,_Rne/Rng_family_1332748..1332898_NEGATIVE 407 223 186 42 4 NC_002950:PG0348|3end_ATP-dependent_DNA_helicase_RecG_384521..384671_POSITIVE 405 509 462 81 34 NC_002950:PG0524|3end_hypothetical_protein_568963..569113_POSITIVE 400 280 231 92 42 NC_002950:PG1402|3end_AP_endonuclease_domain_protein_1485031..1485181_NEGATIVE 400 280 231 130 81 NC_002950:PG0619|3end_alkyl_hydroperoxide_reductase,_F_subunit_672731..672881_POSITIVE 398 213 175 139 99 NC_002950:PG1975|3end_hemagglutinin_protein_HagC_2064350..2064500_POSITIVE 398 213 175 139 99 NC_002950:PG1972|3end_hemagglutinin_protein_HagB_2061203..2061353_POSITIVE 396 719 673 80 31 NC_002950:PG2206|3end_ABC_transporter,_ATP-binding_protein_2317250..2317400_NEGATIVE 396 770 729 81 29 NC_002950:PG0799|3end_hypothetical_protein_854599..854749_POSITIVE 394 229 182 141 92 NC_002950:PG0278|3end_hypothetical_protein_310477..310627_POSITIVE