Origin IGS: gagcatttatccttttcagaacttcgaatgatctctcgccggcgaatcggtttcataacaatgagaccgttgcacaaaaacccttccaccccctcatatcaatcaagacagatacaagcattgatttgacgaagaaaggagagcttcatgcggtctctctgcaaacctcaagaataccccgatggaaacttgggaaaatttctgtttgtttggtgcccatatgtttgaggtttgatctttcctgaaaaacacttaagaatcagctctgcggcaaaagacttcaatgaaagtcctataaaatagttgcaaacagctgatagttagcgcattgatgggagcataatcagctgacaatcgtttcttatttctcgcctatttgacgaggaaaggagtacttctctaatggaaacttggggaaatttctatttgctcggtgcccatataccgaaggtttgacctttcccgaagacactaagaatctgctctgcagcaaaagaactcaatgaaaatcccctgcaacagtctcaacagtgcaagagtcgaaataactaaatatgttgtgttatgaaaagggagctatatcagaatccgaaaaaatggcgaaaatcaatttgttgttgaagcaaaacttgtaagttgcactttaataactaagcattgccattaaccaatttatgctttaatctttatttcgtctgaatatcttacctttggtgaaattcttttacgaagctatgcttgtaaatagaaacctgaaatcaatagacgcataaaatcataattacaatcataatttttgctcatctct .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 agagatgagcaaaaattatgattgtaattatgattttatgcgtctattgatttcaggtttctatttacaagcatagcttcgtaaaagaatttcaccaaaggtaagatattcagacgaaataaagattaaagcataaattggttaatggcaatgcttagttattaaagtgcaacttacaagttttgcttcaacaacaaattgattttcgccattttttcggattctgatatagctcccttttcataacacaacatatttagttatttcgactcttgcactgttgagactgttgcaggggattttcattgagttcttttgctgcagagcagattcttagtgtcttcgggaaaggtcaaaccttcggtatatgggcaccgagcaaatagaaatttccccaagtttccattagagaagtactcctttcctcgtcaaataggcgagaaataagaaacgattgtcagctgattatgctcccatcaatgcgctaactatcagctgtttgcaactattttataggactttcattgaagtcttttgccgcagagctgattcttaagtgtttttcaggaaagatcaaacctcaaacatatgggcaccaaacaaacagaaattttcccaagtttccatcggggtattcttgaggtttgcagagagaccgcatgaagctctcctttcttcgtcaaatcaatgcttgtatctgtcttgattgatatgagggggtggaagggtttttgtgcaacggtctcattgttatgaaaccgattcgccggcgagagatcattcgaagttctgaaaaggataaatgctc Mask Tandem Repeat Region ================================================ gagcatttatccttttcagaacttcgaatgatctctcgccggcgaatcggtttcataacaatgagaccgttgcacaaaaacccttccaccccctcatatcaatcaagacagatacaagcattgatttgacgaagaaaggagagcttcatgcggtctctctgcaaacctcaagaataccccgatggaaacttgggaaaatttctgtttgtttggtgcccatatgtttgaggtttgatctttcctgaaaaacacttaagaatcagctctgcggcaaaagacttcaatgaaagtcctataaaatagttgcaaacagctgatagttagcgcattgatgggagcataatcagctgacaatcgtttcttatttctcgcctatttgacgaggaaaggagtacttctctaatggaaacttggggaaatttctatttgctcggtgcccatataccgaaggtttgacctttcccgaagacactaagaatctgctctgcagcaaaagaactcaatgaaaatcccctgcaacagtctcaacagtgcaagagtcgaaataactaaatatgttgtgttatgaaaagggagctatatcagaatccgaaaaaatggcgaaaatcaatttgttgttgaagcaaaacttgtaagttgcactttaataactaagcattgccattaaccaatttatgctttaatctttatttcgtctgaatatcttacctttggtgaaattcttttacgaagctatgcttgtaaatagaaacctgaaatcaatagacgcataaaatcataattacaatcataatttttgctcatctct Find is-nt database================================================ Query_seq: PG1312:PG1313|PG1312:PG1313:capA protein, putative:dipeptidase-related protein:->->:1391614..1392421 808 gagcatttatccttttcagaacttcgaatgatctctcgccggcgaatcggtttcataacaatgagaccgttgcacaaaaacccttccaccccctcatatcaatcaagacagatacaagcattgatttgacgaagaaaggagagcttcatgcggtctctctgcaaacctcaagaataccccgatggaaacttgggaaaatttctgtttgtttggtgcccatatgtttgaggtttgatctttcctgaaaaacacttaagaatcagctctgcggcaaaagacttcaatgaaagtcctataaaatagttgcaaacagctgatagttagcgcattgatgggagcataatcagctgacaatcgtttcttatttctcgcctatttgacgaggaaaggagtacttctctaatggaaacttggggaaatttctatttgctcggtgcccatataccgaaggtttgacctttcccgaagacactaagaatctgctctgcagcaaaagaactcaatgaaaatcccctgcaacagtctcaacagtgcaagagtcgaaataactaaatatgttgtgttatgaaaagggagctatatcagaatccgaaaaaatggcgaaaatcaatttgttgttgaagcaaaacttgtaagttgcactttaataactaagcattgccattaaccaatttatgctttaatctttatttcgtctgaatatcttacctttggtgaaattcttttacgaagctatgcttgtaaatagaaacctgaaatcaatagacgcataaaatcataattacaatcataatttttgctcatctct Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PG1312:PG1313|PG1312:PG1313:capA protein, putative:dipeptidase-related protein:->->:1391614..1392421 808 gagcatttatccttttcagaacttcgaatgatctctcgccggcgaatcggtttcataacaatgagaccgttgcacaaaaacccttccaccccctcatatcaatcaagacagatacaagcattgatttgacgaagaaaggagagcttcatgcggtctctctgcaaacctcaagaataccccgatggaaacttgggaaaatttctgtttgtttggtgcccatatgtttgaggtttgatctttcctgaaaaacacttaagaatcagctctgcggcaaaagacttcaatgaaagtcctataaaatagttgcaaacagctgatagttagcgcattgatgggagcataatcagctgacaatcgtttcttatttctcgcctatttgacgaggaaaggagtacttctctaatggaaacttggggaaatttctatttgctcggtgcccatataccgaaggtttgacctttcccgaagacactaagaatctgctctgcagcaaaagaactcaatgaaaatcccctgcaacagtctcaacagtgcaagagtcgaaataactaaatatgttgtgttatgaaaagggagctatatcagaatccgaaaaaatggcgaaaatcaatttgttgttgaagcaaaacttgtaagttgcactttaataactaagcattgccattaaccaatttatgctttaatctttatttcgtctgaatatcttacctttggtgaaattcttttacgaagctatgcttgtaaatagaaacctgaaatcaatagacgcataaaatcataattacaatcataatttttgctcatctct Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PG1312:PG1313|PG1312:PG1313:capA protein, putative:dipeptidase-related protein:->->:1391614..1392421 808 gagcatttatccttttcagaacttcgaatgatctctcgccggcgaatcggtttcataacaatgagaccgttgcacaaaaacccttccaccccctcatatcaatcaagacagatacaagcattgatttgacgaagaaaggagagcttcatgcggtctctctgcaaacctcaagaataccccgatggaaacttgggaaaatttctgtttgtttggtgcccatatgtttgaggtttgatctttcctgaaaaacacttaagaatcagctctgcggcaaaagacttcaatgaaagtcctataaaatagttgcaaacagctgatagttagcgcattgatgggagcataatcagctgacaatcgtttcttatttctcgcctatttgacgaggaaaggagtacttctctaatggaaacttggggaaatttctatttgctcggtgcccatataccgaaggtttgacctttcccgaagacactaagaatctgctctgcagcaaaagaactcaatgaaaatcccctgcaacagtctcaacagtgcaagagtcgaaataactaaatatgttgtgttatgaaaagggagctatatcagaatccgaaaaaatggcgaaaatcaatttgttgttgaagcaaaacttgtaagttgcactttaataactaagcattgccattaaccaatttatgctttaatctttatttcgtctgaatatcttacctttggtgaaattcttttacgaagctatgcttgtaaatagaaacctgaaatcaatagacgcataaaatcataattacaatcataatttttgctcatctct Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 gagcatttatccttttcagaacttcgaatgatctctcgccggcgaatcggtttcataacaatgagaccgttgcacaaaaacccttccaccccctcatatcaatcaagacagatacaagcattgatttgacgaagaaaggagagcttcatgcggtctctctgcaaacctcaagaataccccgatggaaacttgggaaaatttctgtttgtttggtgcccatatgtttgaggtttgatctttcctgaaaaacacttaagaatcagctctgcggcaaaagacttcaatgaaagtcctataaaatagttgcaaacagctgatagttagcgcattgatgggagcataatcagctgacaatcgtttcttatttctcgcctatttgacgaggaaaggagtacttctctaatggaaacttggggaaatttctatttgctcggtgcccatataccgaaggtttgacctttcccgaagacactaagaatctgctctgcagcaaaagaactcaatgaaaatcccctgcaacagtctcaacagtgcaagagtcgaaataactaaatatgttgtgttatgaaaagggagctatatcagaatccgaaaaaatggcgaaaatcaatttgttgttgaagcaaaacttgtaagttgcactttaataactaagcattgccattaaccaatttatgctttaatctttatttcgtctgaatatcttacctttggtgaaattcttttacgaagctatgcttgtaaatagaaacctgaaatcaatagacgcataaaatcataattacaatcataatttttgctcatctct Predict ORF larger than 30AA ================================================ Protein_Len: 33 Strand: + Start: 28 End: 126 ........................... M I S R R R I G F I T M R P L H K N P S T P S Y Q S R Q I Q A L I .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 9 End: 242 ........ M L F R T S N D L S P A N R F H N N E T V A Q K P F H P L I S I K T D T S I D L T K K G E L H A V S L Q T S R I P R W K ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 30 Strand: + Start: 364 End: 453 ........................................................................................................................................................................................................................................................................................................................................................................... M S R L F D E E R S T S L M E T W G N F Y L L G A H I P K V ................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 31 Strand: + Start: 411 End: 503 .......................................................................................................................................................................................................................................................................................................................................................................................................................... M G K F L F A R C P Y T E G L T F P E D T K N L L C S K R T Q ................................................................................................................................................................................................................................................................................................................. Protein_Len: 43 Strand: - Start: 365 End: 493 ............................................................................................................................................................................................................................................................................................................................................................................ K E G I Q R P F S Y K E L P F K P F N R N A R H G Y V S P K V K G S S V L F R S Q L M ........................................................................................................................................................................................................................................................................................................................... Protein_Len: 33 Strand: - Start: 256 End: 354 ............................................................................................................................................................................................................................................................... S D A R R C F V E I F T R Y F L Q L C S I T L A N I P A Y D A S M ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 42 Strand: - Start: 171 End: 296 .......................................................................................................................................................................... S Y G S P F K P F N R N T Q H G Y T Q P K I K G S F C K L I L E A A F S K L S L G M ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 49 Strand: - Start: 106 End: 252 ......................................................................................................... S L Y L C Q N S S S L L A E H P R E A F R L F V G I S V Q S F K Q K N P A W I N S T Q D K R F F M ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ gagcatttatccttttcagaacttcgaatgatctctcgccggcgaatcggtttcataacaatgagaccgttgcacaaaaacccttccaccccctcatatcaatcaagacagatacaagcattgatttgacgaagaaaggagagcttcatgcggtctctctgcaaacctcaagaataccccgatggaaacttgggaaaatttctgtttgtttggtgcccatatgtttgaggtttgatctttcctgaaaaacacttaagaatcagctctgcggcaaaagacttcaatgaaagtcctataaaatagttgcaaacagctgatagttagcgcattgatgggagcataatcagctgacaatcgtttcttatttctcgcctatttgacgaggaaaggagtacttctctaatggaaacttggggaaatttctatttgctcggtgcccatataccgaaggtttgacctttcccgaagacactaagaatctgctctgcagcaaaagaactcaatgaaaatcccctgcaacagtctcaacagtgcaagagtcgaaataactaaatatgttgtgttatgaaaagggagctatatcagaatccgaaaaaatggcgaaaatcaatttgttgttgaagcaaaacttgtaagttgcactttaataactaagcattgccattaaccaatttatgctttaatctttatttcgtctgaatatcttacctttggtgaaattcttttacgaagctatgcttgtaaatagaaacctgaaatcaatagacgcataaaatcataattacaatcataatttttgctcatctct Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: + Score: 81 Start: 657 End: 686 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCCATTAACCAATTTATGCTTTAATCT.......................................................................................................................... Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ gagcatttatccttttcagaacttcgaatgatctctcgccggcgaatcggtttcataacaatgagaccgttgcacaaaaacccttccaccccctcatatcaatcaagacagatacaagcattgatttgacgaagaaaggagagcttcatgcggtctctctgcaaacctcaagaataccccgatggaaacttgggaaaatttctgtttgtttggtgcccatatgtttgaggtttgatctttcctgaaaaacacttaagaatcagctctgcggcaaaagacttcaatgaaagtcctataaaatagttgcaaacagctgatagttagcgcattgatgggagcataatcagctgacaatcgtttcttatttctcgcctatttgacgaggaaaggagtacttctctaatggaaacttggggaaatttctatttgctcggtgcccatataccgaaggtttgacctttcccgaagacactaagaatctgctctgcagcaaaagaactcaatgaaaatcccctgcaacagtctcaacagtgcaagagtcgaaataactaaatatgttgtgttatgaaaagggagctatatcagaatccgaaaaaatggcgaaaatcaatttgttgttgaagcaaaacttgtaagttgcactttaataactaagcattgccattaaccaatttatgctttaatctttatttcgtctgaatatcttacctttggtgaaattcttttacgaagctatgcttgtaaatagaaacctgaaatcaatagacgcataaaatcataattacaatcataatttttgctcatctct Predict TransTerm conf > 70================================================ Find igs database================================================ Query_seq: PG1312:PG1313|PG1312:PG1313:capA protein, putative:dipeptidase-related protein:->->:1391614..1392421 808 gagcatttatccttttcagaacttcgaatgatctctcgccggcgaatcggtttcataacaatgagaccgttgcacaaaaacccttccaccccctcatatcaatcaagacagatacaagcattgatttgacgaagaaaggagagcttcatgcggtctctctgcaaacctcaagaataccccgatggaaacttgggaaaatttctgtttgtttggtgcccatatgtttgaggtttgatctttcctgaaaaacacttaagaatcagctctgcggcaaaagacttcaatgaaagtcctataaaatagttgcaaacagctgatagttagcgcattgatgggagcataatcagctgacaatcgtttcttatttctcgcctatttgacgaggaaaggagtacttctctaatggaaacttggggaaatttctatttgctcggtgcccatataccgaaggtttgacctttcccgaagacactaagaatctgctctgcagcaaaagaactcaatgaaaatcccctgcaacagtctcaacagtgcaagagtcgaaataactaaatatgttgtgttatgaaaagggagctatatcagaatccgaaaaaatggcgaaaatcaatttgttgttgaagcaaaacttgtaagttgcactttaataactaagcattgccattaaccaatttatgctttaatctttatttcgtctgaatatcttacctttggtgaaattcttttacgaagctatgcttgtaaatagaaacctgaaatcaatagacgcataaaatcataattacaatcataatttttgctcatctct Intra-Species Hit: Count: 15 Min: 1 Max: 808 Len: 808 Subject: NC_002950_PG1312_PG1313|capA protein, putative:dipeptidase-related protein|POSITIVE:POSITIVE|[1391614,1392421]|808 HSP 1 e-value: 0.0 bit: 1602.0 Len: 808 Query Start:1 Query End:808 Subject Strand: POSITIVE Subject Start: 1 Subject End: 808 gagcatttatccttttcagaacttcgaatgatctctcgccggcgaatcggtttcataacaatgagaccgttgcacaaaaacccttccaccccctcatatcaatcaagacagatacaagcattgatttgacgaagaaaggagagcttcatgcggtctctctgcaaacctcaagaataccccgatggaaacttgggaaaatttctgtttgtttggtgcccatatgtttgaggtttgatctttcctgaaaaacacttaagaatcagctctgcggcaaaagacttcaatgaaagtcctataaaatagttgcaaacagctgatagttagcgcattgatgggagcataatcagctgacaatcgtttcttatttctcgcctatttgacgaggaaaggagtacttctctaatggaaacttggggaaatttctatttgctcggtgcccatataccgaaggtttgacctttcccgaagacactaagaatctgctctgcagcaaaagaactcaatgaaaatcccctgcaacagtctcaacagtgcaagagtcgaaataactaaatatgttgtgttatgaaaagggagctatatcagaatccgaaaaaatggcgaaaatcaatttgttgttgaagcaaaacttgtaagttgcactttaataactaagcattgccattaaccaatttatgctttaatctttatttcgtctgaatatcttacctttggtgaaattcttttacgaagctatgcttgtaaatagaaacctgaaatcaatagacgcataaaatcataattacaatcataatttttgctcatctct gagcatttatccttttcagaacttcgaatgatctctcgccggcgaatcggtttcataacaatgagaccgttgcacaaaaacccttccaccccctcatatcaatcaagacagatacaagcattgatttgacgaagaaaggagagcttcatgcggtctctctgcaaacctcaagaataccccgatggaaacttgggaaaatttctgtttgtttggtgcccatatgtttgaggtttgatctttcctgaaaaacacttaagaatcagctctgcggcaaaagacttcaatgaaagtcctataaaatagttgcaaacagctgatagttagcgcattgatgggagcataatcagctgacaatcgtttcttatttctcgcctatttgacgaggaaaggagtacttctctaatggaaacttggggaaatttctatttgctcggtgcccatataccgaaggtttgacctttcccgaagacactaagaatctgctctgcagcaaaagaactcaatgaaaatcccctgcaacagtctcaacagtgcaagagtcgaaataactaaatatgttgtgttatgaaaagggagctatatcagaatccgaaaaaatggcgaaaatcaatttgttgttgaagcaaaacttgtaagttgcactttaataactaagcattgccattaaccaatttatgctttaatctttatttcgtctgaatatcttacctttggtgaaattcttttacgaagctatgcttgtaaatagaaacctgaaatcaatagacgcataaaatcataattacaatcataatttttgctcatctct Subject: NC_002950_PG1338_PG1340|umuC protein:L-lactate permease|POSITIVE:NEGATIVE|[1419685,1420387]|703 HSP 1 e-value: 1.0E-93 bit: 345.0 Len: 295 Query Start:63 Query End:357 Subject Strand: NEGATIVE Subject Start: 333 Subject End: 625 ..............................................................gagaccgttgcacaaaaacccttccaccccctcatatcaatcaagacagatacaagcattgatttgacgaagaaagga-gagcttcatgcggtctctctgcaaacctcaagaatacccc-gatggaaacttgggaaaatttctgtttgtttggtgcccatatgtttgaggtttgatctttcctgaaaaacacttaagaatcagctctgcggcaaaagacttcaatgaaagtcctataaaatagttgcaaacagctgatagttagcgcattgatgggagcataatcagctgacaatcg................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ..............................................................gagaccgttgcacaataacc-ttccacctcctcatatcgatcaagacagacacaagcattgatttgacgaagaaaggaagtatttcatgcaatctctt--caaagctcaagtatacctctgatggaaacttggggaaatttctgtttgcttggtagccatatctt-gaggtttgatctttcctgaaaaacacttaagaatcagctctgcggcaaaagacttcaatgaaagtcctataaaatagttgcaaatagctgatagttagcgcattgatgggagcagaatcagctgacaatcg................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 1.0E-66 bit: 256.0 Len: 181 Query Start:345 Query End:525 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 181 ........................................................................................................................................................................................................................................................................................................................................................cagctgacaatcgtttcttatttctcgcctatttgacgaggaaaggagtacttctctaatggaaacttggggaaatttctatttgctcggtgcccatataccgaaggtttgacctttcccgaagacactaagaatctgctctgcagcaaaagaactcaatgaaaatcccctgcaacagtct........................................................................................................................................................................................................................................................................................... ........................................................................................................................................................................................................................................................................................................................................................cagccgacaatcgtttcttatttctcgcctatttgacgaggaaaggagtacttctctaatggaaacttggggaaatttctgtttgctcgatgtccatataccggaggtttgatctttcccaaaggcactaagaatcagctctgcagcaaaagagttcaatgaaactcccatgcaacagtct........................................................................................................................................................................................................................................................................................... HSP 3 e-value: 3.0E-11 bit: 71.9 Len: 108 Query Start:182 Query End:289 Subject Strand: NEGATIVE Subject Start: 18 Subject End: 123 .....................................................................................................................................................................................atggaaacttgggaaaatttctgtttgtttggtgcccatatgtttgaggtttgatctttcctgaaaaacacttaagaatcagctctgcggcaaaagacttcaatgaaa....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .....................................................................................................................................................................................atggaaacttggggaaatttctgtttgctcgatgtccatataccggaggtttgatctttccc-aaaggcact-aagaatcagctctgcagcaaaagagttcaatgaaa....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: NC_002950_PG0599_PG0602|3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II:hypothetical protein|POSITIVE:POSITIVE|[657793,658639]|847 HSP 1 e-value: 3.0E-85 bit: 317.0 Len: 289 Query Start:69 Query End:357 Subject Strand: POSITIVE Subject Start: 133 Subject End: 419 ....................................................................gttgcacaaaaacccttccaccccctcatatcaatcaagacagatacaagcattgatttgacgaagaaagga-gagcttcatgcggtctctctgcaaacctcaagaatacccc-gatggaaacttgggaaaatttctgtttgtttggtgcccatatgtttgaggtttgatctttcctgaaaaacacttaagaatcagctctgcggcaaaagacttcaatgaaagtcctataaaatagttgcaaacagctgatagttagcgcattgatgggagcataatcagctgacaatcg................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ....................................................................gttgcacaataacc-tcccacctcctcatatcgatcaagacagacacaagcattgattcgacgaagaaaggaagtatttcatgcaatctctt--caaagctcaagtatacctctgatggaaacttggggaaatttctgtttgcttggtagccatatctt-gaggtttgatctttcctgaaaaacacttaagaatcagctctgcggcaaaagacttcaatgaaagtcctataaaatagttgcaaatagctgatagttagcgcattgatgggagcagaatcagctgacaatcg................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 6.0E-62 bit: 240.0 Len: 185 Query Start:342 Query End:526 Subject Strand: POSITIVE Subject Start: 651 Subject End: 834 .....................................................................................................................................................................................................................................................................................................................................................aatcagctgacaatcgtttcttatttctcgcctatttgacgaggaaaggagtacttctctaatggaaacttggggaaatttctatttgctcggtgcccatataccgaaggtttgacctttcccgaagacactaagaatctgctctgcagcaaaagaactcaatgaaaatcccctgcaacagtctc.......................................................................................................................................................................................................................................................................................... .....................................................................................................................................................................................................................................................................................................................................................aatcagctgacaatcattccttatttctcgcctatttgacgaggaaaggagtacttctctaatggaaacttggggaaatttctgtttgcttggtagccatat-cttgaggtttgatctttcccgaagacactaagaatctgctctgcagcaaaagagttcaatgaaactcccatgcaacagtctc.......................................................................................................................................................................................................................................................................................... HSP 3 e-value: 6.0E-16 bit: 87.7 Len: 108 Query Start:182 Query End:289 Subject Strand: POSITIVE Subject Start: 712 Subject End: 816 .....................................................................................................................................................................................atggaaacttgggaaaatttctgtttgtttggtgcccatatgtttgaggtttgatctttcctgaaaaacacttaagaatcagctctgcggcaaaagacttcaatgaaa....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .....................................................................................................................................................................................atggaaacttggggaaatttctgtttgcttggtagccatat-cttgaggtttgatctttcccg-aagacac-taagaatctgctctgcagcaaaagagttcaatgaaa....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: NC_002950_PG1181_PG1184|transcriptional regulator, tetR family:alginate O-acetyltransferase, putative|NEGATIVE:NEGATIVE|[1264346,1265424]|1079 HSP 1 e-value: 2.0E-83 bit: 311.0 Len: 181 Query Start:347 Query End:527 Subject Strand: POSITIVE Subject Start: 814 Subject End: 994 ..........................................................................................................................................................................................................................................................................................................................................................gctgacaatcgtttcttatttctcgcctatttgacgaggaaaggagtacttctctaatggaaacttggggaaatttctatttgctcggtgcccatataccgaaggtttgacctttcccgaagacactaagaatctgctctgcagcaaaagaactcaatgaaaatcccctgcaacagtctca......................................................................................................................................................................................................................................................................................... ..........................................................................................................................................................................................................................................................................................................................................................gctgacaatcgtttcttatttctcgcctatttgacgaggaaaggagtacttctctaatggaaacttggggaaatttctatttgctcggtgcccatataccggaggtttgacctttcccgaagacactaagaatcagctctgcagcaaaagagctcaatcaaactcccatgcaacagtctca......................................................................................................................................................................................................................................................................................... HSP 2 e-value: 9.0E-52 bit: 206.0 Len: 116 Query Start:242 Query End:357 Subject Strand: POSITIVE Subject Start: 381 Subject End: 496 .................................................................................................................................................................................................................................................ctgaaaaacacttaagaatcagctctgcggcaaaagacttcaatgaaagtcctataaaatagttgcaaacagctgatagttagcgcattgatgggagcataatcagctgacaatcg................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .................................................................................................................................................................................................................................................ctgaaaaacacttaagaatcagctctgcggcaaaagacttcaataaaagtcctataaaatagttgcaaatagctgatagttagcgcattgatgggagcagaatcagctgacaatcg................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 3 e-value: 2.0E-34 bit: 149.0 Len: 111 Query Start:62 Query End:172 Subject Strand: POSITIVE Subject Start: 267 Subject End: 376 .............................................................tgagaccgttgcacaaaaacccttccaccccctcatatcaatcaagacagatacaagcattgatttgacgaagaaaggagagcttcatgcggtctctctgcaaacctcaag............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ .............................................................tgagactgttgcacaataacc-tcccacctcctcatatcgatcaagacagacacaagcattgatttgacgaagaaaggagagcttcatgcgatctctctgcaaacctcaag............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ HSP 4 e-value: 2.0E-9 bit: 65.9 Len: 97 Query Start:182 Query End:278 Subject Strand: POSITIVE Subject Start: 870 Subject End: 964 .....................................................................................................................................................................................atggaaacttgggaaaatttctgtttgtttggtgcccatatgtttgaggtttgatctttcctgaaaaacacttaagaatcagctctgcggcaaaaga.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. .....................................................................................................................................................................................atggaaacttggggaaatttctatttgctcggtgcccatataccggaggtttgacctttcccg-aagacac-taagaatcagctctgcagcaaaaga.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: NC_002950_PG1156_PG1159|S4 domain protein:cobalamin biosynthesis protein CbiB|POSITIVE:NEGATIVE|[1237328,1238046]|719 HSP 1 e-value: 5.0E-81 bit: 303.0 Len: 181 Query Start:345 Query End:525 Subject Strand: NEGATIVE Subject Start: 107 Subject End: 287 ........................................................................................................................................................................................................................................................................................................................................................cagctgacaatcgtttcttatttctcgcctatttgacgaggaaaggagtacttctctaatggaaacttggggaaatttctatttgctcggtgcccatataccgaaggtttgacctttcccgaagacactaagaatctgctctgcagcaaaagaactcaatgaaaatcccctgcaacagtct........................................................................................................................................................................................................................................................................................... ........................................................................................................................................................................................................................................................................................................................................................cagctgacaatcgtttcttatttctcgcctatttgacgaggaaaggagtacttctctgatggaaacttggggaaatttctatttgctcggtacccatataccggaggtttgacctttcccgaagacactaagaatcagctctgcagcaaaagagctcaatgaaactcccatgcaacagtct........................................................................................................................................................................................................................................................................................... HSP 2 e-value: 1.0E-44 bit: 182.0 Len: 104 Query Start:254 Query End:357 Subject Strand: NEGATIVE Subject Start: 603 Subject End: 706 .............................................................................................................................................................................................................................................................taagaatcagctctgcggcaaaagacttcaatgaaagtcctataaaatagttgcaaacagctgatagttagcgcattgatgggagcataatcagctgacaatcg................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .............................................................................................................................................................................................................................................................taagaatcagctctgcggcaaaagacttcaatgaaagtcctataaaatagttgcaaacagctgatagttagcgtattgatgggagcagagtcagctgacaatcg................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 3 e-value: 2.0E-9 bit: 65.9 Len: 109 Query Start:181 Query End:289 Subject Strand: NEGATIVE Subject Start: 124 Subject End: 230 ....................................................................................................................................................................................gatggaaacttgggaaaatttctgtttgtttggtgcccatatgtttgaggtttgatctttcctgaaaaacacttaagaatcagctctgcggcaaaagacttcaatgaaa....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ....................................................................................................................................................................................gatggaaacttggggaaatttctatttgctcggtacccatataccggaggtttgacctttcccgaaga-cact-aagaatcagctctgcagcaaaagagctcaatgaaa....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: NC_002950_PG1291_PG1294|hypothetical protein:ferrous iron transport protein B|NEGATIVE:POSITIVE|[1371269,1372186]|918 HSP 1 e-value: 3.0E-76 bit: 287.0 Len: 182 Query Start:342 Query End:523 Subject Strand: NEGATIVE Subject Start: 51 Subject End: 234 .....................................................................................................................................................................................................................................................................................................................................................aatcagctgacaatcgtttcttatttctcgcctatttgacgaggaaaggagtacttctctaatggaaacttggggaaatttctatttgctcg--gtgcccatataccgaaggtttgacctttcccgaagacactaagaatctgctctgcagcaaaagaactcaatgaaaatcccctgcaacagt............................................................................................................................................................................................................................................................................................. .....................................................................................................................................................................................................................................................................................................................................................aatcagctgacaatcgtttcttatttctcgcctatttgacgaggaaaggagtacttctctaatggaaacttgggaaaatttctgtttgcttggtgtgcccatataccggaggtttgacctttcccgaagacactaagaatctgctctgcagcaaaagagctcaatgaaactcccatgcaacagt............................................................................................................................................................................................................................................................................................. HSP 2 e-value: 1.0E-56 bit: 222.0 Len: 116 Query Start:242 Query End:357 Subject Strand: NEGATIVE Subject Start: 629 Subject End: 744 .................................................................................................................................................................................................................................................ctgaaaaacacttaagaatcagctctgcggcaaaagacttcaatgaaagtcctataaaatagttgcaaacagctgatagttagcgcattgatgggagcataatcagctgacaatcg................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .................................................................................................................................................................................................................................................ctgaaaaacacttaagaatcagctctgcggcaaaagacttcaatgaaagtcctataaaatagttgcaaacagctgatagttagcgcattgatgggagcagaatcagctgacaatcg................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 3 e-value: 4.0E-29 bit: 131.0 Len: 110 Query Start:63 Query End:172 Subject Strand: NEGATIVE Subject Start: 749 Subject End: 858 ..............................................................gagaccgttgcacaaaaacccttccaccccctcatatcaatcaagacagatacaagcattgatttgacgaagaaaggagagcttcatgcggtctctctgcaaacctcaag............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ ..............................................................gagactgttgcacaataaccctctccccctctcatattgatcaagacagacacaagcattgatttgacgaagaaaggagagcttcatgcaatctctctgcaaacctcaag............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ HSP 4 e-value: 1.0E-10 bit: 69.9 Len: 108 Query Start:182 Query End:289 Subject Strand: NEGATIVE Subject Start: 66 Subject End: 173 .....................................................................................................................................................................................atggaaacttgggaaaatttctgtttgtttg--gtgcccatatgtttgaggtttgatctttcctgaaaaacacttaagaatcagctctgcggcaaaagacttcaatgaaa....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .....................................................................................................................................................................................atggaaacttgggaaaatttctgtttgcttggtgtgcccatataccggaggtttgacctttcccg-aagacac-taagaatctgctctgcagcaaaagagctcaatgaaa....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: NC_002950_PG1626_PG1630|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1710547,1711911]|1365 HSP 1 e-value: 1.0E-75 bit: 285.0 Len: 184 Query Start:345 Query End:528 Subject Strand: POSITIVE Subject Start: 1071 Subject End: 1254 ........................................................................................................................................................................................................................................................................................................................................................cagctgacaatcgtttcttatttctcgcctatttgacgaggaaaggagtacttctctaatggaaacttggggaaatttctatttgctcggtgcccatataccgaaggtttgacctttcccgaagacactaagaatctgctctgcagcaaaagaactcaatgaaaatcccctgcaacagtctcaa........................................................................................................................................................................................................................................................................................ ........................................................................................................................................................................................................................................................................................................................................................cagccgacaatcgtttcttatttctcgcctatttgacgaggaaaggagtgcttctctaatggaaacttggggaaatttctgtttgctcgatgtccatataccggaggtttgacctttcccgaagacactaagaatcagctctgcagcaaaagagctcaatgaaactcccccgcaacagtctcaa........................................................................................................................................................................................................................................................................................ HSP 2 e-value: 4.0E-54 bit: 214.0 Len: 116 Query Start:242 Query End:357 Subject Strand: POSITIVE Subject Start: 558 Subject End: 673 .................................................................................................................................................................................................................................................ctgaaaaacacttaagaatcagctctgcggcaaaagacttcaatgaaagtcctataaaatagttgcaaacagctgatagttagcgcattgatgggagcataatcagctgacaatcg................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .................................................................................................................................................................................................................................................ctgaaaaacacttaagaatcagctctgcggcaaaagacttcaatgaaagtcctataaaatagttgcaaatagctgatagttagcgcattgatgggagcagaatcagctgacaatcg................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 3 e-value: 3.0E-30 bit: 135.0 Len: 84 Query Start:89 Query End:172 Subject Strand: POSITIVE Subject Start: 470 Subject End: 553 ........................................................................................ccccctcatatcaatcaagacagatacaagcattgatttgacgaagaaaggagagcttcatgcggtctctctgcaaacctcaag............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ ........................................................................................ccccctcatatcgatcaagacagatacaagcattgattcgacgaagaaaagagagcttcatgcgatctctctgcaaacctcaag............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ HSP 4 e-value: 8.0E-9 bit: 63.9 Len: 108 Query Start:182 Query End:289 Subject Strand: POSITIVE Subject Start: 1129 Subject End: 1234 .....................................................................................................................................................................................atggaaacttgggaaaatttctgtttgtttggtgcccatatgtttgaggtttgatctttcctgaaaaacacttaagaatcagctctgcggcaaaagacttcaatgaaa....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .....................................................................................................................................................................................atggaaacttggggaaatttctgtttgctcgatgtccatataccggaggtttgacctttcccgaaga-cact-aagaatcagctctgcagcaaaagagctcaatgaaa....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: NC_002950_PG1697_PG1701|type II restriction endonuclease, putative:glutamine amidotransferase, class II/dipeptidase|POSITIVE:NEGATIVE|[1785135,1786234]|1100 HSP 1 e-value: 2.0E-74 bit: 281.0 Len: 186 Query Start:342 Query End:527 Subject Strand: POSITIVE Subject Start: 646 Subject End: 831 .....................................................................................................................................................................................................................................................................................................................................................aatcagctgacaatcgtttcttatttctcgcctatttgacgaggaaaggagtacttctctaatggaaacttggggaaatttctatttgctcggtgcccatataccgaaggtttgacctttcccgaagacactaagaatctgctctgcagcaaaagaactcaatgaaaatcccctgcaacagtctca......................................................................................................................................................................................................................................................................................... .....................................................................................................................................................................................................................................................................................................................................................aatcagccgacaatcgtttcttatttctcgcctatttgacgaggaaaggagtacttctctaatggaaacttgggaaaatttctgtttgctcgatgtccatataccggaggtttgatctttcccaaaggcactaagaatcagctctgcagcaaaagagctcaatgaaaatcccctgcaacagtctca......................................................................................................................................................................................................................................................................................... HSP 2 e-value: 1.0E-56 bit: 222.0 Len: 116 Query Start:242 Query End:357 Subject Strand: POSITIVE Subject Start: 217 Subject End: 332 .................................................................................................................................................................................................................................................ctgaaaaacacttaagaatcagctctgcggcaaaagacttcaatgaaagtcctataaaatagttgcaaacagctgatagttagcgcattgatgggagcataatcagctgacaatcg................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .................................................................................................................................................................................................................................................ctgaaaaacacttaagaatcagctctgcggcaaaagacttcaatgaaagtcctataaaatagttgcaaacagctgatagttagcgcattgatgggagcagaatcagctgacaatcg................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 3 e-value: 7.0E-28 bit: 127.0 Len: 80 Query Start:93 Query End:172 Subject Strand: POSITIVE Subject Start: 133 Subject End: 212 ............................................................................................ctcatatcaatcaagacagatacaagcattgatttgacgaagaaaggagagcttcatgcggtctctctgcaaacctcaag............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ ............................................................................................ctcatattgatcaagacagacacaagcattgatttgacgaagaaaggagagcttcatgcgatctctctgcaaacctcaag............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ HSP 4 e-value: 3.0E-11 bit: 71.9 Len: 108 Query Start:182 Query End:289 Subject Strand: POSITIVE Subject Start: 707 Subject End: 812 .....................................................................................................................................................................................atggaaacttgggaaaatttctgtttgtttggtgcccatatgtttgaggtttgatctttcctgaaaaacacttaagaatcagctctgcggcaaaagacttcaatgaaa....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .....................................................................................................................................................................................atggaaacttgggaaaatttctgtttgctcgatgtccatataccggaggtttgatctttcc-caaaggcac-taagaatcagctctgcagcaaaagagctcaatgaaa....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: NC_002950_PG0639_PG0645|signal peptide peptidase SppA, 67K type:hypothetical protein|NEGATIVE:NEGATIVE|[693091,696972]|3882 HSP 1 e-value: 1.0E-66 bit: 256.0 Len: 153 Query Start:375 Query End:527 Subject Strand: POSITIVE Subject Start: 1289 Subject End: 1441 ......................................................................................................................................................................................................................................................................................................................................................................................atttgacgaggaaaggagtacttctctaatggaaacttggggaaatttctatttgctcggtgcccatataccgaaggtttgacctttcccgaagacactaagaatctgctctgcagcaaaagaactcaatgaaaatcccctgcaacagtctca......................................................................................................................................................................................................................................................................................... ......................................................................................................................................................................................................................................................................................................................................................................................atttgacgaggaaaggaatacttctctgatggaaacttggtgaaatttctatttgctcggtgcccatataccggaggtttgacctttcccgaagacactaagaatctgctctgcagcaaaagagttcaatgaaaatcccctgcaacagtctca......................................................................................................................................................................................................................................................................................... HSP 2 e-value: 1.0E-56 bit: 222.0 Len: 116 Query Start:242 Query End:357 Subject Strand: POSITIVE Subject Start: 484 Subject End: 599 .................................................................................................................................................................................................................................................ctgaaaaacacttaagaatcagctctgcggcaaaagacttcaatgaaagtcctataaaatagttgcaaacagctgatagttagcgcattgatgggagcataatcagctgacaatcg................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .................................................................................................................................................................................................................................................ctgaaaaacacttaagaatcagctctgcggcaaaagacttcaatgaaagtcctataaaatagttgcaaacagctgatagttagcgcattgatgggagcagaatcagctgacaatcg................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 3 e-value: 1.0E-41 bit: 172.0 Len: 103 Query Start:70 Query End:172 Subject Strand: POSITIVE Subject Start: 377 Subject End: 479 .....................................................................ttgcacaaaaacccttccaccccctcatatcaatcaagacagatacaagcattgatttgacgaagaaaggagagcttcatgcggtctctctgcaaacctcaag............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ .....................................................................ttgcacaataacccttccaccccctcatatcgatcaagacagacacaagcattgatttgacgaagaaaggagagcttcatgcgatctctctgcaaacctcaag............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ HSP 4 e-value: 2.0E-9 bit: 65.9 Len: 109 Query Start:181 Query End:289 Subject Strand: POSITIVE Subject Start: 1316 Subject End: 1422 ....................................................................................................................................................................................gatggaaacttgggaaaatttctgtttgtttggtgcccatatgtttgaggtttgatctttcctgaaaaacacttaagaatcagctctgcggcaaaagacttcaatgaaa....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ....................................................................................................................................................................................gatggaaacttggtgaaatttctatttgctcggtgcccatataccggaggtttgacctttcccg-aagacac-taagaatctgctctgcagcaaaagagttcaatgaaa....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: NC_002950_PG0232_PG0234|zinc carboxypeptidase, putative:immunoreactive 23 kDa antigen PG66|NEGATIVE:NEGATIVE|[270014,270850]|837 HSP 1 e-value: 1.0E-53 bit: 212.0 Len: 152 Query Start:375 Query End:526 Subject Strand: NEGATIVE Subject Start: 220 Subject End: 373 ......................................................................................................................................................................................................................................................................................................................................................................................atttgacgaggaaaggagtacttctctaatggaaacttggggaaatttctatttgctcg--gtgcccatataccgaaggtttgacctttcccgaagacactaagaatctgctctgcagcaaaagaactcaatgaaaatcccctgcaacagtctc.......................................................................................................................................................................................................................................................................................... ......................................................................................................................................................................................................................................................................................................................................................................................atttgacgaggaaaggagtacttctctaatggaaacttgatgaaatttctgtttgcttgctgtgtccatataccgaaggtttgacctttcccgaagacactaagaatctgctctgcagcaaaagagctcaatgaaactcccatgcaacaatctc.......................................................................................................................................................................................................................................................................................... HSP 2 e-value: 3.0E-48 bit: 194.0 Len: 114 Query Start:242 Query End:355 Subject Strand: NEGATIVE Subject Start: 491 Subject End: 604 .................................................................................................................................................................................................................................................ctgaaaaacacttaagaatcagctctgcggcaaaagacttcaatgaaagtcctataaaatagttgcaaacagctgatagttagcgcattgatgggagcataatcagctgacaat..................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .................................................................................................................................................................................................................................................ctgaaaaacacttaagaatcaactctgcggcaaaagacttcaatgaaagtcctataaaatagttgcaaatagctgatagttagcgcattgacgggagcagaatcagctgacaat..................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 3 e-value: 3.0E-30 bit: 135.0 Len: 111 Query Start:62 Query End:172 Subject Strand: NEGATIVE Subject Start: 609 Subject End: 717 .............................................................tgagaccgttgcacaaaaacccttccaccccctcatatcaatcaagacagatacaagcattgatttgacgaagaaaggagagcttcatgcggtctctctgcaaacctcaag............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ .............................................................tgagaccgttatacaataacccttcc--cccctcatattgatcaagacagataaatgcattgatttgacgaagaaaggagagcttcatgcgatctctctgcaaacctcaag............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Subject: NC_002950_PG0973_PG0975|alpha-1,2-mannosidase family protein:PhoH family protein|POSITIVE:POSITIVE|[1036623,1037423]|801 HSP 1 e-value: 9.0E-52 bit: 206.0 Len: 153 Query Start:375 Query End:527 Subject Strand: NEGATIVE Subject Start: 68 Subject End: 222 ......................................................................................................................................................................................................................................................................................................................................................................................atttgacgaggaaaggagtacttctctaatggaaacttggggaaatttctatttgctcg--gtgcccatataccgaaggtttgacctttcccgaagacactaagaatctgctctgcagcaaaagaactcaatgaaaatcccctgcaacagtctca......................................................................................................................................................................................................................................................................................... ......................................................................................................................................................................................................................................................................................................................................................................................atttgacgaggaaaggagtacttctctaatggaaacttgatgaaatttctgtttgcttgctgtgtccatataccgaaggtttgacctttcccgaagacactaagaatcagctctgcagcaaaagagctcgatgaaactcccatgcaacagtctca......................................................................................................................................................................................................................................................................................... HSP 2 e-value: 9.0E-52 bit: 206.0 Len: 116 Query Start:242 Query End:357 Subject Strand: NEGATIVE Subject Start: 502 Subject End: 617 .................................................................................................................................................................................................................................................ctgaaaaacacttaagaatcagctctgcggcaaaagacttcaatgaaagtcctataaaatagttgcaaacagctgatagttagcgcattgatgggagcataatcagctgacaatcg................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .................................................................................................................................................................................................................................................ctgaaaaacacttaagaatcagctctgcggcaaaagacttcaatgaaagtcctataaaatagttgcaaacagctgatagttagcgtattgatgggagcagagtcagctgacaatcg................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 3 e-value: 2.0E-40 bit: 168.0 Len: 113 Query Start:60 Query End:172 Subject Strand: NEGATIVE Subject Start: 622 Subject End: 733 ...........................................................aatgagaccgttgcacaaaaacccttccaccccctcatatcaatcaagacagatacaagcattgatttgacgaagaaaggagagcttcatgcggtctctctgcaaacctcaag............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ ...........................................................aatgagaccgttgcacaataaccctccc-ccccctcatatcgatcaagacagatacatgcattgatttgacgaagaaaggagagcttcatgcgatctctctgcaaacctcaag............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Subject: NC_002950_PG0205_PG0209|peptide chain release factor 3:formate/nitrite transporter|NEGATIVE:POSITIVE|[242184,243370]|1187 HSP 1 e-value: 2.0E-49 bit: 198.0 Len: 116 Query Start:242 Query End:357 Subject Strand: NEGATIVE Subject Start: 756 Subject End: 871 .................................................................................................................................................................................................................................................ctgaaaaacacttaagaatcagctctgcggcaaaagacttcaatgaaagtcctataaaatagttgcaaacagctgatagttagcgcattgatgggagcataatcagctgacaatcg................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .................................................................................................................................................................................................................................................ctgaaaaacacttaagaatcagctctgcggcaaaagacttcaatgaaagccctataaaatagttgcaaatagctgatagttagcgcattgatgggagcagaatcagttgacaatcg................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 2.0E-31 bit: 139.0 Len: 122 Query Start:406 Query End:527 Subject Strand: NEGATIVE Subject Start: 292 Subject End: 413 .....................................................................................................................................................................................................................................................................................................................................................................................................................gaaacttggggaaatttctatttgctcggtgcccatataccgaaggtttgacctttcccgaagacactaagaatctgctctgcagcaaaagaactcaatgaaaatcccctgcaacagtctca......................................................................................................................................................................................................................................................................................... .....................................................................................................................................................................................................................................................................................................................................................................................................................gaaacttggggaaatttctgtttgctcgatgtccatataccggaggtttgatctttcccaaaggcactaagaatcagctctgcagcaaaagagttcaataaaaatcccgtgtaacagtctca......................................................................................................................................................................................................................................................................................... HSP 3 e-value: 4.0E-23 bit: 111.0 Len: 96 Query Start:63 Query End:158 Subject Strand: NEGATIVE Subject Start: 888 Subject End: 983 ..............................................................gagaccgttgcacaaaaacccttccaccccctcatatcaatcaagacagatacaagcattgatttgacgaagaaaggagagcttcatgcggtctct.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ..............................................................gagacctttgcacaataacccttccacctcctcatatcgatcaaggcagacacaagcattgatttgacgaagagaggactgcttcatgcgatctct.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 4 e-value: 9.0E-12 bit: 73.8 Len: 172 Query Start:114 Query End:285 Subject Strand: NEGATIVE Subject Start: 315 Subject End: 486 .................................................................................................................acaagcattgatttgacgaagaaaggagagcttcatgcggtctctctgcaaacctcaagaatacccc---gatggaaacttgggaaaatttctgtttgtttggtgcccatatgtttgaggtttgatctttcctgaaaaacacttaagaatcagctctgcggcaaaagacttcaat........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .................................................................................................................acaagcattgatttgacgaaaaaaggagtgcttcatg-tgagtctctgcgaacctcaagtatccacctctgaaagaaacttggggaaatttctgtttgctcgatgtccatataccggaggtttgatctttcc-caaaggcac-taagaatcagctctgcagcaaaagagttcaat........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: NC_002950_PG1684_PG1685|hypothetical protein:hypothetical protein|POSITIVE:NEGATIVE|[1771544,1772305]|762 HSP 1 e-value: 5.0E-38 bit: 161.0 Len: 211 Query Start:79 Query End:289 Subject Strand: NEGATIVE Subject Start: 249 Subject End: 458 ..............................................................................aacccttccaccccctcatatcaatcaagacagatacaagcattgatttgacgaagaaaggagagcttcatgcggtctctctgcaaacctcaagaatacccc---gatggaaacttgggaaaatttctgtttgtttggtgcccatatgtttgaggtttgatctttcctgaaaaacacttaagaatcagctctgcggcaaaagacttcaatgaaa....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ..............................................................................aaccctcctaccccctcatattgatcaagacagatacaagcattgatttgacgaagaaaggagcgcttcatgcag--tatctgcaaacctcaagtatacacctctgatggaagcttggggaaatttctgtttactcggtgcccatatacttgagatttgacctttcctg-aaaacac-aaggaatcagccctgcagcaaaagaattcaatgaaa....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 1.0E-29 bit: 133.0 Len: 131 Query Start:398 Query End:528 Subject Strand: NEGATIVE Subject Start: 229 Subject End: 359 .............................................................................................................................................................................................................................................................................................................................................................................................................ctctaatggaaacttggggaaatttctatttgctcggtgcccatataccgaaggtttgacctttcccgaagacactaagaatctgctctgcagcaaaagaactcaatgaaaatcccctgcaacagtctcaa........................................................................................................................................................................................................................................................................................ .............................................................................................................................................................................................................................................................................................................................................................................................................ctctgatggaagcttggggaaatttctgtttactcggtgcccatatacttgagatttgacctttcctgaaaacacaaggaatcagccctgcagcaaaagaattcaatgaaaatcccgtgcaacagtctcaa........................................................................................................................................................................................................................................................................................ Subject: NC_002950_PG0747_PG0749|sigma-54 dependent DNA-binding response regulator:hypothetical protein|NEGATIVE:NEGATIVE|[795385,795627]|243 HSP 1 e-value: 1.0E-23 bit: 113.0 Len: 121 Query Start:406 Query End:526 Subject Strand: NEGATIVE Subject Start: 61 Subject End: 181 .....................................................................................................................................................................................................................................................................................................................................................................................................................gaaacttggggaaatttctatttgctcggtgcccatataccgaaggtttgacctttcccgaagacactaagaatctgctctgcagcaaaagaactcaatgaaaatcccctgcaacagtctc.......................................................................................................................................................................................................................................................................................... .....................................................................................................................................................................................................................................................................................................................................................................................................................gaaactgggggaaatatctatttgctcggtgctcatgtcctggaggtttaacctttcacgaaggcacaaagaatcagctctgcggaaaaagagttcaatgaaaatcccctgcaacagtctc.......................................................................................................................................................................................................................................................................................... HSP 2 e-value: 5.0E-7 bit: 58.0 Len: 53 Query Start:125 Query End:177 Subject Strand: NEGATIVE Subject Start: 192 Subject End: 243 ............................................................................................................................tttgacgaagaaaggagagcttcatgcggtctctctgcaaacctcaagaatac....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ............................................................................................................................tttgacgaagaaaggaatgcttcatgcgg-atctctgcaaacctcaagtatac....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 3 e-value: 8.0E-6 bit: 54.0 Len: 35 Query Start:255 Query End:289 Subject Strand: NEGATIVE Subject Start: 79 Subject End: 113 ..............................................................................................................................................................................................................................................................aagaatcagctctgcggcaaaagacttcaatgaaa....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ..............................................................................................................................................................................................................................................................aagaatcagctctgcggaaaaagagttcaatgaaa....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: NC_002950_PG1426_PG1427|hypothetical protein:thiol protease/hemagglutinin PrtT precursor, putative|NEGATIVE:NEGATIVE|[1511401,1511954]|554 HSP 1 e-value: 1.0E-13 bit: 79.8 Len: 119 Query Start:89 Query End:207 Subject Strand: NEGATIVE Subject Start: 280 Subject End: 398 ........................................................................................ccccctcatatcaatcaagacagatacaagcattgatttgacgaagaaaggagagcttcatgcggtctctctgcaaacctcaagaata-ccccgatggaaacttgggaaaatttctgttt......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ........................................................................................ccccctcatattgatgaagacaaacacaagcattgatttgacgaagaaaagagagcttcatgtag-gtctctgcgaacctcaaaaatatacctgaaggaaacttggggaaatctctgttt......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ GAGCAUUUAUCCUUUUCAGAACUUCGAAUGAUCUCUCGCCGGCGAAUCGGUUUCAUAACAAUGAGACCGUUGCACAAAAACCCUUCCACCCCCUCAUAUCAAUCAAGACAGAUACAAGCAUUGAUUUGACGAAGAAAGGAGAGCUUCAUGCGGUCUCUCUGCAAACCUCAAGAAUACCCCGAUGGAAACUUGGGAAAAUUUCUGUUUGUUUGGUGCCCAUAUGUUUGAGGUUUGAUCUUUCCUGAAAAACACUUAAGAAUCAGCUCUGCGGCAAAAGACUUCAAUGAAAGUCCUAUAAAAUAGUUGCAAACAGCUGAUAGUUAGCGCAUUGAUGGGAGCAUAAUCAGCUGACAAUCGUUUCUUAUUUCUCGCCUAUUUGACGAGGAAAGGAGUACUUCUCUAAUGGAAACUUGGGGAAAUUUCUAUUUGCUCGGUGCCCAUAUACCGAAGGUUUGACCUUUCCCGAAGACACUAAGAAUCUGCUCUGCAGCAAAAGAACUCAAUGAAAAUCCCCUGCAACAGUCUCAACAGUGCAAGAGUCGAAAUAACUAAAUAUGUUGUGUUAUGAAAAGGGAGCUAUAUCAGAAUCCGAAAAAAUGGCGAAAAUCAAUUUGUUGUUGAAGCAAAACUUGUAAGUUGCACUUUAAUAACUAAGCAUUGCCAUUAACCAAUUUAUGCUUUAAUCUUUAUUUCGUCUGAAUAUCUUACCUUUGGUGAAAUUCUUUUACGAAGCUAUGCUUGUAAAUAGAAACCUGAAAUCAAUAGACGCAUAAAAUCAUAAUUACAAUCAUAAUUUUUGCUCAUCUCU (((((.......(((((((..(((((...((((....((..((((..(((((((((....)))))))))))))............................(((......)))....))...))))...)))))...((((((((......)).)))))).(((((((((((.....(((((.(....))))))................(((...)))....))))))))))).......)))))))...........((.(((((...(((...(((((......)))))..........((((((..((((((((.((...(.((....)).)...)).))))))))....(((((((((.(((((((.(.....).))))))).((((((.((((.((.((....(((.((((((..((...((..((((((......)))))).))...))..)))))).))).)).))))))..)))))).......))))....)))))........))))))...........))).))))).))..........(((((((((((((((...(((..((.....))..))).....((((((((.......((.((((((((((...((((....))))...)))))))))).))...))))))))......(((((((((((...((.(((((...........(((((...)))))..(((((((((.((((...))))))))).))))....))))).)))))).))))))).)))))).))))).)))).....)))))...... (-194.40) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AGAGAUGAGCAAAAAUUAUGAUUGUAAUUAUGAUUUUAUGCGUCUAUUGAUUUCAGGUUUCUAUUUACAAGCAUAGCUUCGUAAAAGAAUUUCACCAAAGGUAAGAUAUUCAGACGAAAUAAAGAUUAAAGCAUAAAUUGGUUAAUGGCAAUGCUUAGUUAUUAAAGUGCAACUUACAAGUUUUGCUUCAACAACAAAUUGAUUUUCGCCAUUUUUUCGGAUUCUGAUAUAGCUCCCUUUUCAUAACACAACAUAUUUAGUUAUUUCGACUCUUGCACUGUUGAGACUGUUGCAGGGGAUUUUCAUUGAGUUCUUUUGCUGCAGAGCAGAUUCUUAGUGUCUUCGGGAAAGGUCAAACCUUCGGUAUAUGGGCACCGAGCAAAUAGAAAUUUCCCCAAGUUUCCAUUAGAGAAGUACUCCUUUCCUCGUCAAAUAGGCGAGAAAUAAGAAACGAUUGUCAGCUGAUUAUGCUCCCAUCAAUGCGCUAACUAUCAGCUGUUUGCAACUAUUUUAUAGGACUUUCAUUGAAGUCUUUUGCCGCAGAGCUGAUUCUUAAGUGUUUUUCAGGAAAGAUCAAACCUCAAACAUAUGGGCACCAAACAAACAGAAAUUUUCCCAAGUUUCCAUCGGGGUAUUCUUGAGGUUUGCAGAGAGACCGCAUGAAGCUCUCCUUUCUUCGUCAAAUCAAUGCUUGUAUCUGUCUUGAUUGAUAUGAGGGGGUGGAAGGGUUUUUGUGCAACGGUCUCAUUGUUAUGAAACCGAUUCGCCGGCGAGAGAUCAUUCGAAGUUCUGAAAAGGAUAAAUGCUC ..((((..((((((((((((((....))))))))))).))))))).(((((((...(((((..(((((((((...)))).))))).((((.(((((...)))..)).))))....)))))..))))))).((((......(((...(((((.((((((((..........))))...)))).)))))..))).......(((((((((((......((((.((((((((.......((((((..(((((.......(((((..(((((((.........)))))))((((.((((((((((((....(((((((...(.((((((((.(((..(((((((....((((((..((.....((((((........))))))......))..))))))...(((((.....(((.....))).....((((((.....))))))......)))))...((..(((.......)))..)).....)))))))..))).)))..))))).)........))))))).....)))))))))))).)))).))))).......))))).....))))))..(((((((((......(((...))).......((((....((((...........))))..)))))))))))))....(((((((((..((((((((((..((((((..((((((.((........)).))))))...))))))..).)).)))).)))..)))...))))))..))))).))).))))......))))).))))))......(((((....)))))..)))).. (-208.44) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 784 110 61 209 161 NC_002950:PG0975|5end_PhoH_family_protein_1037284..1037514_POSITIVE 722 140 91 229 179 NC_002950:PG1294|5end_ferrous_iron_transport_protein_B_1372047..1372277_POSITIVE 645 158 112 154 108 NC_002950:PG1251|5end_hypothetical_protein_1327779..1328009_POSITIVE 351 99 63 228 192 NC_002950:PG0572|5end_hypothetical_protein_627571..627801_NEGATIVE 340 69 22 184 132 NC_002950:PG0310|5end_nitroreductase_family_protein_345559..345789_NEGATIVE 338 76 33 100 61 NC_002950:PG2218|5end_potassium_uptake_protein_TrkA_2331580..2331810_POSITIVE 331 350 313 65 26 NC_002950:PG1647|5end_cardiolipin_synthetase_1726273..1726503_POSITIVE 324 50 9 164 108 NC_002950:PG1143|5end_sugar_dehydrogenase,_UDP-glucose/GDP-mannose_dehydrogenase_family_1227198..1227428_NEGATIVE 322 186 143 205 157 NC_002950:PG0660|5end_nitroreductase_family_protein_709695..709925_NEGATIVE 319 364 326 213 171 NC_002950:PG1975|5end_hemagglutinin_protein_HagC_2063218..2063448_POSITIVE 315 90 43 93 40 NC_002950:PG2074|5end_hypothetical_protein_2174661..2174891_NEGATIVE 315 90 43 93 40 NC_002950:PG1670|5end_hypothetical_protein_1755853..1756083_NEGATIVE 315 90 43 93 40 NC_002950:PG1265|5end_hypothetical_protein_1345182..1345412_NEGATIVE 315 90 43 93 40 NC_002950:PG0102|5end_hypothetical_protein_121003..121233_POSITIVE 314 186 148 47 4 NC_002950:PG0661|5end_hypothetical_protein_709853..710083_NEGATIVE 313 50 2 207 142 NC_002950:PG0890|5end_alkaline_phosphatase,_putative_951332..951562_POSITIVE 313 450 404 169 116 NC_002950:PG0204|5end_hypothetical_protein_240507..240737_NEGATIVE 311 51 11 75 32 NC_002950:PG1874|5end_hypothetical_protein_1969660..1969890_NEGATIVE 311 368 325 70 25 NC_002950:PG0840|5end_hypothetical_protein_898372..898602_POSITIVE 308 466 421 68 30 NC_002950:PG1959|5end_ribosomal_protein_L33_2048405..2048635_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 680 490 441 55 6 NC_002950:PG1338|3end_umuC_protein_1419624..1419774_POSITIVE 338 76 33 47 8 NC_002950:PG2217|3end_1-deoxy-D-xylulose-5-phosphate_synthase_2331607..2331757_POSITIVE 336 169 121 75 18 NC_002950:PG1797|3end_DNA-binding_response_regulator/sensor_histidine_kinase_1892978..1893128_POSITIVE 327 169 129 56 6 NC_002950:PG1401|3end_beta-eliminating_lyase_1483399..1483549_NEGATIVE 326 419 371 147 87 NC_002950:PG1095|3end_RNA_methyltransferase,_TrmA_family_1161702..1161852_POSITIVE 319 360 312 55 3 NC_002950:PG1742|3end_hypothetical_protein_1827506..1827656_POSITIVE 318 187 141 57 14 NC_002950:PG1751|3end_aminotransferase,_class_V_1838490..1838640_POSITIVE 314 50 1 131 94 NC_002950:PG1276|3end_DNA-binding_protein,_histone-like_family_1353531..1353681_POSITIVE 314 50 1 131 94 NC_002950:PG0566|3end_DNA-binding_protein,_histone-like_family_622935..623085_NEGATIVE 313 550 505 55 1 NC_002950:PG0973|3end_alpha-1,2-mannosidase_family_protein_1036562..1036712_POSITIVE 311 51 11 88 45 NC_002950:PG1875|3end_hemolysin_1969647..1969797_NEGATIVE 311 368 325 92 47 NC_002950:PG0839|3end_hypothetical_protein_898474..898624_POSITIVE 308 466 421 49 11 NC_002950:PG1960|3end_ribosomal_protein_L28_2048424..2048574_NEGATIVE 305 194 154 68 26 NC_002950:PG1070|3end_L-lysine_2,3-aminomutase_1137959..1138109_POSITIVE 305 506 461 75 19 NC_002950:PG0340|3end_hypothetical_protein_376436..376586_POSITIVE 301 130 81 86 27 NC_002950:PG2037|3end_hypothetical_protein_2137591..2137741_NEGATIVE 301 194 160 78 37 NC_002950:PG0004|3end_NAD-dependent_deacetylase_3752..3902_POSITIVE 298 49 3 111 60 NC_002950:PG0572|3end_hypothetical_protein_627434..627584_NEGATIVE 297 471 431 51 7 NC_002950:PG1285|3end_glucosamine-6-phosphate_deaminase_1364941..1365091_POSITIVE 297 217 179 126 77 NC_002950:PG0278|3end_hypothetical_protein_310477..310627_POSITIVE