Origin IGS:
gagcatttatccttttcagaacttcgaatgatctctcgccggcgaatcggtttcataacaatgagaccgttgcacaaaaacccttccaccccctcatatcaatcaagacagatacaagcattgatttgacgaagaaaggagagcttcatgcggtctctctgcaaacctcaagaataccccgatggaaacttgggaaaatttctgtttgtttggtgcccatatgtttgaggtttgatctttcctgaaaaacacttaagaatcagctctgcggcaaaagacttcaatgaaagtcctataaaatagttgcaaacagctgatagttagcgcattgatgggagcataatcagctgacaatcgtttcttatttctcgcctatttgacgaggaaaggagtacttctctaatggaaacttggggaaatttctatttgctcggtgcccatataccgaaggtttgacctttcccgaagacactaagaatctgctctgcagcaaaagaactcaatgaaaatcccctgcaacagtctcaacagtgcaagagtcgaaataactaaatatgttgtgttatgaaaagggagctatatcagaatccgaaaaaatggcgaaaatcaatttgttgttgaagcaaaacttgtaagttgcactttaataactaagcattgccattaaccaatttatgctttaatctttatttcgtctgaatatcttacctttggtgaaattcttttacgaagctatgcttgtaaatagaaacctgaaatcaatagacgcataaaatcataattacaatcataatttttgctcatctct
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9
agagatgagcaaaaattatgattgtaattatgattttatgcgtctattgatttcaggtttctatttacaagcatagcttcgtaaaagaatttcaccaaaggtaagatattcagacgaaataaagattaaagcataaattggttaatggcaatgcttagttattaaagtgcaacttacaagttttgcttcaacaacaaattgattttcgccattttttcggattctgatatagctcccttttcataacacaacatatttagttatttcgactcttgcactgttgagactgttgcaggggattttcattgagttcttttgctgcagagcagattcttagtgtcttcgggaaaggtcaaaccttcggtatatgggcaccgagcaaatagaaatttccccaagtttccattagagaagtactcctttcctcgtcaaataggcgagaaataagaaacgattgtcagctgattatgctcccatcaatgcgctaactatcagctgtttgcaactattttataggactttcattgaagtcttttgccgcagagctgattcttaagtgtttttcaggaaagatcaaacctcaaacatatgggcaccaaacaaacagaaattttcccaagtttccatcggggtattcttgaggtttgcagagagaccgcatgaagctctcctttcttcgtcaaatcaatgcttgtatctgtcttgattgatatgagggggtggaagggtttttgtgcaacggtctcattgttatgaaaccgattcgccggcgagagatcattcgaagttctgaaaaggataaatgctc

Mask Tandem Repeat Region ================================================
gagcatttatccttttcagaacttcgaatgatctctcgccggcgaatcggtttcataacaatgagaccgttgcacaaaaacccttccaccccctcatatcaatcaagacagatacaagcattgatttgacgaagaaaggagagcttcatgcggtctctctgcaaacctcaagaataccccgatggaaacttgggaaaatttctgtttgtttggtgcccatatgtttgaggtttgatctttcctgaaaaacacttaagaatcagctctgcggcaaaagacttcaatgaaagtcctataaaatagttgcaaacagctgatagttagcgcattgatgggagcataatcagctgacaatcgtttcttatttctcgcctatttgacgaggaaaggagtacttctctaatggaaacttggggaaatttctatttgctcggtgcccatataccgaaggtttgacctttcccgaagacactaagaatctgctctgcagcaaaagaactcaatgaaaatcccctgcaacagtctcaacagtgcaagagtcgaaataactaaatatgttgtgttatgaaaagggagctatatcagaatccgaaaaaatggcgaaaatcaatttgttgttgaagcaaaacttgtaagttgcactttaataactaagcattgccattaaccaatttatgctttaatctttatttcgtctgaatatcttacctttggtgaaattcttttacgaagctatgcttgtaaatagaaacctgaaatcaatagacgcataaaatcataattacaatcataatttttgctcatctct

Find is-nt database================================================
Query_seq: PG1312:PG1313|PG1312:PG1313:capA protein, putative:dipeptidase-related protein:->->:1391614..1392421 808
gagcatttatccttttcagaacttcgaatgatctctcgccggcgaatcggtttcataacaatgagaccgttgcacaaaaacccttccaccccctcatatcaatcaagacagatacaagcattgatttgacgaagaaaggagagcttcatgcggtctctctgcaaacctcaagaataccccgatggaaacttgggaaaatttctgtttgtttggtgcccatatgtttgaggtttgatctttcctgaaaaacacttaagaatcagctctgcggcaaaagacttcaatgaaagtcctataaaatagttgcaaacagctgatagttagcgcattgatgggagcataatcagctgacaatcgtttcttatttctcgcctatttgacgaggaaaggagtacttctctaatggaaacttggggaaatttctatttgctcggtgcccatataccgaaggtttgacctttcccgaagacactaagaatctgctctgcagcaaaagaactcaatgaaaatcccctgcaacagtctcaacagtgcaagagtcgaaataactaaatatgttgtgttatgaaaagggagctatatcagaatccgaaaaaatggcgaaaatcaatttgttgttgaagcaaaacttgtaagttgcactttaataactaagcattgccattaaccaatttatgctttaatctttatttcgtctgaatatcttacctttggtgaaattcttttacgaagctatgcttgtaaatagaaacctgaaatcaatagacgcataaaatcataattacaatcataatttttgctcatctct
Intra-Species Hit: Count: 0
Inter-species Hit: Count: 0

Find is-aa database================================================
Query_seq: PG1312:PG1313|PG1312:PG1313:capA protein, putative:dipeptidase-related protein:->->:1391614..1392421 808
gagcatttatccttttcagaacttcgaatgatctctcgccggcgaatcggtttcataacaatgagaccgttgcacaaaaacccttccaccccctcatatcaatcaagacagatacaagcattgatttgacgaagaaaggagagcttcatgcggtctctctgcaaacctcaagaataccccgatggaaacttgggaaaatttctgtttgtttggtgcccatatgtttgaggtttgatctttcctgaaaaacacttaagaatcagctctgcggcaaaagacttcaatgaaagtcctataaaatagttgcaaacagctgatagttagcgcattgatgggagcataatcagctgacaatcgtttcttatttctcgcctatttgacgaggaaaggagtacttctctaatggaaacttggggaaatttctatttgctcggtgcccatataccgaaggtttgacctttcccgaagacactaagaatctgctctgcagcaaaagaactcaatgaaaatcccctgcaacagtctcaacagtgcaagagtcgaaataactaaatatgttgtgttatgaaaagggagctatatcagaatccgaaaaaatggcgaaaatcaatttgttgttgaagcaaaacttgtaagttgcactttaataactaagcattgccattaaccaatttatgctttaatctttatttcgtctgaatatcttacctttggtgaaattcttttacgaagctatgcttgtaaatagaaacctgaaatcaatagacgcataaaatcataattacaatcataatttttgctcatctct
Intra-Species Hit: Count: 0
Inter-species Hit: Count: 0

Find nr database================================================
Query_seq: PG1312:PG1313|PG1312:PG1313:capA protein, putative:dipeptidase-related protein:->->:1391614..1392421 808
gagcatttatccttttcagaacttcgaatgatctctcgccggcgaatcggtttcataacaatgagaccgttgcacaaaaacccttccaccccctcatatcaatcaagacagatacaagcattgatttgacgaagaaaggagagcttcatgcggtctctctgcaaacctcaagaataccccgatggaaacttgggaaaatttctgtttgtttggtgcccatatgtttgaggtttgatctttcctgaaaaacacttaagaatcagctctgcggcaaaagacttcaatgaaagtcctataaaatagttgcaaacagctgatagttagcgcattgatgggagcataatcagctgacaatcgtttcttatttctcgcctatttgacgaggaaaggagtacttctctaatggaaacttggggaaatttctatttgctcggtgcccatataccgaaggtttgacctttcccgaagacactaagaatctgctctgcagcaaaagaactcaatgaaaatcccctgcaacagtctcaacagtgcaagagtcgaaataactaaatatgttgtgttatgaaaagggagctatatcagaatccgaaaaaatggcgaaaatcaatttgttgttgaagcaaaacttgtaagttgcactttaataactaagcattgccattaaccaatttatgctttaatctttatttcgtctgaatatcttacctttggtgaaattcttttacgaagctatgcttgtaaatagaaacctgaaatcaatagacgcataaaatcataattacaatcataatttttgctcatctct
Intra-Species Hit: Count: 0
Inter-species Hit: Count: 0

gagcatttatccttttcagaacttcgaatgatctctcgccggcgaatcggtttcataacaatgagaccgttgcacaaaaacccttccaccccctcatatcaatcaagacagatacaagcattgatttgacgaagaaaggagagcttcatgcggtctctctgcaaacctcaagaataccccgatggaaacttgggaaaatttctgtttgtttggtgcccatatgtttgaggtttgatctttcctgaaaaacacttaagaatcagctctgcggcaaaagacttcaatgaaagtcctataaaatagttgcaaacagctgatagttagcgcattgatgggagcataatcagctgacaatcgtttcttatttctcgcctatttgacgaggaaaggagtacttctctaatggaaacttggggaaatttctatttgctcggtgcccatataccgaaggtttgacctttcccgaagacactaagaatctgctctgcagcaaaagaactcaatgaaaatcccctgcaacagtctcaacagtgcaagagtcgaaataactaaatatgttgtgttatgaaaagggagctatatcagaatccgaaaaaatggcgaaaatcaatttgttgttgaagcaaaacttgtaagttgcactttaataactaagcattgccattaaccaatttatgctttaatctttatttcgtctgaatatcttacctttggtgaaattcttttacgaagctatgcttgtaaatagaaacctgaaatcaatagacgcataaaatcataattacaatcataatttttgctcatctct
Predict ORF larger than 30AA ================================================
Protein_Len: 33	Strand: +	Start: 28	End: 126
........................... M  I  S  R  R  R  I  G  F  I  T  M  R  P  L  H  K  N  P  S  T  P  S  Y  Q  S  R  Q  I  Q  A  L  I ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
Protein_Len: 60	Strand: +	Start: 9	End: 242
........ M  L  F  R  T  S  N  D  L  S  P  A  N  R  F  H  N  N  E  T  V  A  Q  K  P  F  H  P  L  I  S  I  K  T  D  T  S  I  D  L  T  K  K  G  E  L  H  A  V  S  L  Q  T  S  R  I  P  R  W  K ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
Protein_Len: 30	Strand: +	Start: 364	End: 453
........................................................................................................................................................................................................................................................................................................................................................................... M  S  R  L  F  D  E  E  R  S  T  S  L  M  E  T  W  G  N  F  Y  L  L  G  A  H  I  P  K  V ...................................................................................................................................................................................................................................................................................................................................................................
Protein_Len: 31	Strand: +	Start: 411	End: 503
.......................................................................................................................................................................................................................................................................................................................................................................................................................... M  G  K  F  L  F  A  R  C  P  Y  T  E  G  L  T  F  P  E  D  T  K  N  L  L  C  S  K  R  T  Q .................................................................................................................................................................................................................................................................................................................
Protein_Len: 43	Strand: -	Start: 365	End: 493
............................................................................................................................................................................................................................................................................................................................................................................ K  E  G  I  Q  R  P  F  S  Y  K  E  L  P  F  K  P  F  N  R  N  A  R  H  G  Y  V  S  P  K  V  K  G  S  S  V  L  F  R  S  Q  L  M ...........................................................................................................................................................................................................................................................................................................................
Protein_Len: 33	Strand: -	Start: 256	End: 354
............................................................................................................................................................................................................................................................... S  D  A  R  R  C  F  V  E  I  F  T  R  Y  F  L  Q  L  C  S  I  T  L  A  N  I  P  A  Y  D  A  S  M ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................
Protein_Len: 42	Strand: -	Start: 171	End: 296
.......................................................................................................................................................................... S  Y  G  S  P  F  K  P  F  N  R  N  T  Q  H  G  Y  T  Q  P  K  I  K  G  S  F  C  K  L  I  L  E  A  A  F  S  K  L  S  L  G  M ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
Protein_Len: 49	Strand: -	Start: 106	End: 252
......................................................................................................... S  L  Y  L  C  Q  N  S  S  S  L  L  A  E  H  P  R  E  A  F  R  L  F  V  G  I  S  V  Q  S  F  K  Q  K  N  P  A  W  I  N  S  T  Q  D  K  R  F  F  M ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................

gagcatttatccttttcagaacttcgaatgatctctcgccggcgaatcggtttcataacaatgagaccgttgcacaaaaacccttccaccccctcatatcaatcaagacagatacaagcattgatttgacgaagaaaggagagcttcatgcggtctctctgcaaacctcaagaataccccgatggaaacttgggaaaatttctgtttgtttggtgcccatatgtttgaggtttgatctttcctgaaaaacacttaagaatcagctctgcggcaaaagacttcaatgaaagtcctataaaatagttgcaaacagctgatagttagcgcattgatgggagcataatcagctgacaatcgtttcttatttctcgcctatttgacgaggaaaggagtacttctctaatggaaacttggggaaatttctatttgctcggtgcccatataccgaaggtttgacctttcccgaagacactaagaatctgctctgcagcaaaagaactcaatgaaaatcccctgcaacagtctcaacagtgcaagagtcgaaataactaaatatgttgtgttatgaaaagggagctatatcagaatccgaaaaaatggcgaaaatcaatttgttgttgaagcaaaacttgtaagttgcactttaataactaagcattgccattaaccaatttatgctttaatctttatttcgtctgaatatcttacctttggtgaaattcttttacgaagctatgcttgtaaatagaaacctgaaatcaatagacgcataaaatcataattacaatcataatttttgctcatctct
Predict Promoter with matrix: RpoD-15 score > 80================================================

Predict Promoter with matrix: RpoD-16 score > 80================================================

Predict Promoter with matrix: RpoD-17 score > 80================================================
PromScan Matrix: RpoD-17	Strand: +	Score: 81	Start: 657	End: 686
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCCATTAACCAATTTATGCTTTAATCT..........................................................................................................................

Predict Promoter with matrix: RpoD-18 score > 80================================================

Predict Promoter with matrix: RpoD-19 score > 80================================================

Predict Promoter with matrix: RpoN score > 80================================================

gagcatttatccttttcagaacttcgaatgatctctcgccggcgaatcggtttcataacaatgagaccgttgcacaaaaacccttccaccccctcatatcaatcaagacagatacaagcattgatttgacgaagaaaggagagcttcatgcggtctctctgcaaacctcaagaataccccgatggaaacttgggaaaatttctgtttgtttggtgcccatatgtttgaggtttgatctttcctgaaaaacacttaagaatcagctctgcggcaaaagacttcaatgaaagtcctataaaatagttgcaaacagctgatagttagcgcattgatgggagcataatcagctgacaatcgtttcttatttctcgcctatttgacgaggaaaggagtacttctctaatggaaacttggggaaatttctatttgctcggtgcccatataccgaaggtttgacctttcccgaagacactaagaatctgctctgcagcaaaagaactcaatgaaaatcccctgcaacagtctcaacagtgcaagagtcgaaataactaaatatgttgtgttatgaaaagggagctatatcagaatccgaaaaaatggcgaaaatcaatttgttgttgaagcaaaacttgtaagttgcactttaataactaagcattgccattaaccaatttatgctttaatctttatttcgtctgaatatcttacctttggtgaaattcttttacgaagctatgcttgtaaatagaaacctgaaatcaatagacgcataaaatcataattacaatcataatttttgctcatctct
Predict TransTerm conf > 70================================================

Find igs database================================================
Query_seq: PG1312:PG1313|PG1312:PG1313:capA protein, putative:dipeptidase-related protein:->->:1391614..1392421 808
gagcatttatccttttcagaacttcgaatgatctctcgccggcgaatcggtttcataacaatgagaccgttgcacaaaaacccttccaccccctcatatcaatcaagacagatacaagcattgatttgacgaagaaaggagagcttcatgcggtctctctgcaaacctcaagaataccccgatggaaacttgggaaaatttctgtttgtttggtgcccatatgtttgaggtttgatctttcctgaaaaacacttaagaatcagctctgcggcaaaagacttcaatgaaagtcctataaaatagttgcaaacagctgatagttagcgcattgatgggagcataatcagctgacaatcgtttcttatttctcgcctatttgacgaggaaaggagtacttctctaatggaaacttggggaaatttctatttgctcggtgcccatataccgaaggtttgacctttcccgaagacactaagaatctgctctgcagcaaaagaactcaatgaaaatcccctgcaacagtctcaacagtgcaagagtcgaaataactaaatatgttgtgttatgaaaagggagctatatcagaatccgaaaaaatggcgaaaatcaatttgttgttgaagcaaaacttgtaagttgcactttaataactaagcattgccattaaccaatttatgctttaatctttatttcgtctgaatatcttacctttggtgaaattcttttacgaagctatgcttgtaaatagaaacctgaaatcaatagacgcataaaatcataattacaatcataatttttgctcatctct
Intra-Species Hit: Count: 15	Min: 1	Max: 808	Len: 808
Subject: NC_002950_PG1312_PG1313|capA protein, putative:dipeptidase-related protein|POSITIVE:POSITIVE|[1391614,1392421]|808
HSP  1	e-value: 0.0	bit: 1602.0	Len: 808	Query Start:1	Query End:808	Subject Strand: POSITIVE	Subject Start: 1	Subject End: 808
gagcatttatccttttcagaacttcgaatgatctctcgccggcgaatcggtttcataacaatgagaccgttgcacaaaaacccttccaccccctcatatcaatcaagacagatacaagcattgatttgacgaagaaaggagagcttcatgcggtctctctgcaaacctcaagaataccccgatggaaacttgggaaaatttctgtttgtttggtgcccatatgtttgaggtttgatctttcctgaaaaacacttaagaatcagctctgcggcaaaagacttcaatgaaagtcctataaaatagttgcaaacagctgatagttagcgcattgatgggagcataatcagctgacaatcgtttcttatttctcgcctatttgacgaggaaaggagtacttctctaatggaaacttggggaaatttctatttgctcggtgcccatataccgaaggtttgacctttcccgaagacactaagaatctgctctgcagcaaaagaactcaatgaaaatcccctgcaacagtctcaacagtgcaagagtcgaaataactaaatatgttgtgttatgaaaagggagctatatcagaatccgaaaaaatggcgaaaatcaatttgttgttgaagcaaaacttgtaagttgcactttaataactaagcattgccattaaccaatttatgctttaatctttatttcgtctgaatatcttacctttggtgaaattcttttacgaagctatgcttgtaaatagaaacctgaaatcaatagacgcataaaatcataattacaatcataatttttgctcatctct
gagcatttatccttttcagaacttcgaatgatctctcgccggcgaatcggtttcataacaatgagaccgttgcacaaaaacccttccaccccctcatatcaatcaagacagatacaagcattgatttgacgaagaaaggagagcttcatgcggtctctctgcaaacctcaagaataccccgatggaaacttgggaaaatttctgtttgtttggtgcccatatgtttgaggtttgatctttcctgaaaaacacttaagaatcagctctgcggcaaaagacttcaatgaaagtcctataaaatagttgcaaacagctgatagttagcgcattgatgggagcataatcagctgacaatcgtttcttatttctcgcctatttgacgaggaaaggagtacttctctaatggaaacttggggaaatttctatttgctcggtgcccatataccgaaggtttgacctttcccgaagacactaagaatctgctctgcagcaaaagaactcaatgaaaatcccctgcaacagtctcaacagtgcaagagtcgaaataactaaatatgttgtgttatgaaaagggagctatatcagaatccgaaaaaatggcgaaaatcaatttgttgttgaagcaaaacttgtaagttgcactttaataactaagcattgccattaaccaatttatgctttaatctttatttcgtctgaatatcttacctttggtgaaattcttttacgaagctatgcttgtaaatagaaacctgaaatcaatagacgcataaaatcataattacaatcataatttttgctcatctct

Subject: NC_002950_PG1338_PG1340|umuC protein:L-lactate permease|POSITIVE:NEGATIVE|[1419685,1420387]|703
HSP  1	e-value: 1.0E-93	bit: 345.0	Len: 295	Query Start:63	Query End:357	Subject Strand: NEGATIVE	Subject Start: 333	Subject End: 625
..............................................................gagaccgttgcacaaaaacccttccaccccctcatatcaatcaagacagatacaagcattgatttgacgaagaaagga-gagcttcatgcggtctctctgcaaacctcaagaatacccc-gatggaaacttgggaaaatttctgtttgtttggtgcccatatgtttgaggtttgatctttcctgaaaaacacttaagaatcagctctgcggcaaaagacttcaatgaaagtcctataaaatagttgcaaacagctgatagttagcgcattgatgggagcataatcagctgacaatcg...................................................................................................................................................................................................................................................................................................................................................................................................................................................................
..............................................................gagaccgttgcacaataacc-ttccacctcctcatatcgatcaagacagacacaagcattgatttgacgaagaaaggaagtatttcatgcaatctctt--caaagctcaagtatacctctgatggaaacttggggaaatttctgtttgcttggtagccatatctt-gaggtttgatctttcctgaaaaacacttaagaatcagctctgcggcaaaagacttcaatgaaagtcctataaaatagttgcaaatagctgatagttagcgcattgatgggagcagaatcagctgacaatcg...................................................................................................................................................................................................................................................................................................................................................................................................................................................................
HSP  2	e-value: 1.0E-66	bit: 256.0	Len: 181	Query Start:345	Query End:525	Subject Strand: NEGATIVE	Subject Start: 1	Subject End: 181
........................................................................................................................................................................................................................................................................................................................................................cagctgacaatcgtttcttatttctcgcctatttgacgaggaaaggagtacttctctaatggaaacttggggaaatttctatttgctcggtgcccatataccgaaggtttgacctttcccgaagacactaagaatctgctctgcagcaaaagaactcaatgaaaatcccctgcaacagtct...........................................................................................................................................................................................................................................................................................
........................................................................................................................................................................................................................................................................................................................................................cagccgacaatcgtttcttatttctcgcctatttgacgaggaaaggagtacttctctaatggaaacttggggaaatttctgtttgctcgatgtccatataccggaggtttgatctttcccaaaggcactaagaatcagctctgcagcaaaagagttcaatgaaactcccatgcaacagtct...........................................................................................................................................................................................................................................................................................
HSP  3	e-value: 3.0E-11	bit: 71.9	Len: 108	Query Start:182	Query End:289	Subject Strand: NEGATIVE	Subject Start: 18	Subject End: 123
.....................................................................................................................................................................................atggaaacttgggaaaatttctgtttgtttggtgcccatatgtttgaggtttgatctttcctgaaaaacacttaagaatcagctctgcggcaaaagacttcaatgaaa.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
.....................................................................................................................................................................................atggaaacttggggaaatttctgtttgctcgatgtccatataccggaggtttgatctttccc-aaaggcact-aagaatcagctctgcagcaaaagagttcaatgaaa.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................

Subject: NC_002950_PG0599_PG0602|3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II:hypothetical protein|POSITIVE:POSITIVE|[657793,658639]|847
HSP  1	e-value: 3.0E-85	bit: 317.0	Len: 289	Query Start:69	Query End:357	Subject Strand: POSITIVE	Subject Start: 133	Subject End: 419
....................................................................gttgcacaaaaacccttccaccccctcatatcaatcaagacagatacaagcattgatttgacgaagaaagga-gagcttcatgcggtctctctgcaaacctcaagaatacccc-gatggaaacttgggaaaatttctgtttgtttggtgcccatatgtttgaggtttgatctttcctgaaaaacacttaagaatcagctctgcggcaaaagacttcaatgaaagtcctataaaatagttgcaaacagctgatagttagcgcattgatgggagcataatcagctgacaatcg...................................................................................................................................................................................................................................................................................................................................................................................................................................................................
....................................................................gttgcacaataacc-tcccacctcctcatatcgatcaagacagacacaagcattgattcgacgaagaaaggaagtatttcatgcaatctctt--caaagctcaagtatacctctgatggaaacttggggaaatttctgtttgcttggtagccatatctt-gaggtttgatctttcctgaaaaacacttaagaatcagctctgcggcaaaagacttcaatgaaagtcctataaaatagttgcaaatagctgatagttagcgcattgatgggagcagaatcagctgacaatcg...................................................................................................................................................................................................................................................................................................................................................................................................................................................................
HSP  2	e-value: 6.0E-62	bit: 240.0	Len: 185	Query Start:342	Query End:526	Subject Strand: POSITIVE	Subject Start: 651	Subject End: 834
.....................................................................................................................................................................................................................................................................................................................................................aatcagctgacaatcgtttcttatttctcgcctatttgacgaggaaaggagtacttctctaatggaaacttggggaaatttctatttgctcggtgcccatataccgaaggtttgacctttcccgaagacactaagaatctgctctgcagcaaaagaactcaatgaaaatcccctgcaacagtctc..........................................................................................................................................................................................................................................................................................
.....................................................................................................................................................................................................................................................................................................................................................aatcagctgacaatcattccttatttctcgcctatttgacgaggaaaggagtacttctctaatggaaacttggggaaatttctgtttgcttggtagccatat-cttgaggtttgatctttcccgaagacactaagaatctgctctgcagcaaaagagttcaatgaaactcccatgcaacagtctc..........................................................................................................................................................................................................................................................................................
HSP  3	e-value: 6.0E-16	bit: 87.7	Len: 108	Query Start:182	Query End:289	Subject Strand: POSITIVE	Subject Start: 712	Subject End: 816
.....................................................................................................................................................................................atggaaacttgggaaaatttctgtttgtttggtgcccatatgtttgaggtttgatctttcctgaaaaacacttaagaatcagctctgcggcaaaagacttcaatgaaa.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
.....................................................................................................................................................................................atggaaacttggggaaatttctgtttgcttggtagccatat-cttgaggtttgatctttcccg-aagacac-taagaatctgctctgcagcaaaagagttcaatgaaa.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................

Subject: NC_002950_PG1181_PG1184|transcriptional regulator, tetR family:alginate O-acetyltransferase, putative|NEGATIVE:NEGATIVE|[1264346,1265424]|1079
HSP  1	e-value: 2.0E-83	bit: 311.0	Len: 181	Query Start:347	Query End:527	Subject Strand: POSITIVE	Subject Start: 814	Subject End: 994
..........................................................................................................................................................................................................................................................................................................................................................gctgacaatcgtttcttatttctcgcctatttgacgaggaaaggagtacttctctaatggaaacttggggaaatttctatttgctcggtgcccatataccgaaggtttgacctttcccgaagacactaagaatctgctctgcagcaaaagaactcaatgaaaatcccctgcaacagtctca.........................................................................................................................................................................................................................................................................................
..........................................................................................................................................................................................................................................................................................................................................................gctgacaatcgtttcttatttctcgcctatttgacgaggaaaggagtacttctctaatggaaacttggggaaatttctatttgctcggtgcccatataccggaggtttgacctttcccgaagacactaagaatcagctctgcagcaaaagagctcaatcaaactcccatgcaacagtctca.........................................................................................................................................................................................................................................................................................
HSP  2	e-value: 9.0E-52	bit: 206.0	Len: 116	Query Start:242	Query End:357	Subject Strand: POSITIVE	Subject Start: 381	Subject End: 496
.................................................................................................................................................................................................................................................ctgaaaaacacttaagaatcagctctgcggcaaaagacttcaatgaaagtcctataaaatagttgcaaacagctgatagttagcgcattgatgggagcataatcagctgacaatcg...................................................................................................................................................................................................................................................................................................................................................................................................................................................................
.................................................................................................................................................................................................................................................ctgaaaaacacttaagaatcagctctgcggcaaaagacttcaataaaagtcctataaaatagttgcaaatagctgatagttagcgcattgatgggagcagaatcagctgacaatcg...................................................................................................................................................................................................................................................................................................................................................................................................................................................................
HSP  3	e-value: 2.0E-34	bit: 149.0	Len: 111	Query Start:62	Query End:172	Subject Strand: POSITIVE	Subject Start: 267	Subject End: 376
.............................................................tgagaccgttgcacaaaaacccttccaccccctcatatcaatcaagacagatacaagcattgatttgacgaagaaaggagagcttcatgcggtctctctgcaaacctcaag............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
.............................................................tgagactgttgcacaataacc-tcccacctcctcatatcgatcaagacagacacaagcattgatttgacgaagaaaggagagcttcatgcgatctctctgcaaacctcaag............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
HSP  4	e-value: 2.0E-9	bit: 65.9	Len: 97	Query Start:182	Query End:278	Subject Strand: POSITIVE	Subject Start: 870	Subject End: 964
.....................................................................................................................................................................................atggaaacttgggaaaatttctgtttgtttggtgcccatatgtttgaggtttgatctttcctgaaaaacacttaagaatcagctctgcggcaaaaga..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
.....................................................................................................................................................................................atggaaacttggggaaatttctatttgctcggtgcccatataccggaggtttgacctttcccg-aagacac-taagaatcagctctgcagcaaaaga..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................

Subject: NC_002950_PG1156_PG1159|S4 domain protein:cobalamin biosynthesis protein CbiB|POSITIVE:NEGATIVE|[1237328,1238046]|719
HSP  1	e-value: 5.0E-81	bit: 303.0	Len: 181	Query Start:345	Query End:525	Subject Strand: NEGATIVE	Subject Start: 107	Subject End: 287
........................................................................................................................................................................................................................................................................................................................................................cagctgacaatcgtttcttatttctcgcctatttgacgaggaaaggagtacttctctaatggaaacttggggaaatttctatttgctcggtgcccatataccgaaggtttgacctttcccgaagacactaagaatctgctctgcagcaaaagaactcaatgaaaatcccctgcaacagtct...........................................................................................................................................................................................................................................................................................
........................................................................................................................................................................................................................................................................................................................................................cagctgacaatcgtttcttatttctcgcctatttgacgaggaaaggagtacttctctgatggaaacttggggaaatttctatttgctcggtacccatataccggaggtttgacctttcccgaagacactaagaatcagctctgcagcaaaagagctcaatgaaactcccatgcaacagtct...........................................................................................................................................................................................................................................................................................
HSP  2	e-value: 1.0E-44	bit: 182.0	Len: 104	Query Start:254	Query End:357	Subject Strand: NEGATIVE	Subject Start: 603	Subject End: 706
.............................................................................................................................................................................................................................................................taagaatcagctctgcggcaaaagacttcaatgaaagtcctataaaatagttgcaaacagctgatagttagcgcattgatgggagcataatcagctgacaatcg...................................................................................................................................................................................................................................................................................................................................................................................................................................................................
.............................................................................................................................................................................................................................................................taagaatcagctctgcggcaaaagacttcaatgaaagtcctataaaatagttgcaaacagctgatagttagcgtattgatgggagcagagtcagctgacaatcg...................................................................................................................................................................................................................................................................................................................................................................................................................................................................
HSP  3	e-value: 2.0E-9	bit: 65.9	Len: 109	Query Start:181	Query End:289	Subject Strand: NEGATIVE	Subject Start: 124	Subject End: 230
....................................................................................................................................................................................gatggaaacttgggaaaatttctgtttgtttggtgcccatatgtttgaggtttgatctttcctgaaaaacacttaagaatcagctctgcggcaaaagacttcaatgaaa.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
....................................................................................................................................................................................gatggaaacttggggaaatttctatttgctcggtacccatataccggaggtttgacctttcccgaaga-cact-aagaatcagctctgcagcaaaagagctcaatgaaa.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................

Subject: NC_002950_PG1291_PG1294|hypothetical protein:ferrous iron transport protein B|NEGATIVE:POSITIVE|[1371269,1372186]|918
HSP  1	e-value: 3.0E-76	bit: 287.0	Len: 182	Query Start:342	Query End:523	Subject Strand: NEGATIVE	Subject Start: 51	Subject End: 234
.....................................................................................................................................................................................................................................................................................................................................................aatcagctgacaatcgtttcttatttctcgcctatttgacgaggaaaggagtacttctctaatggaaacttggggaaatttctatttgctcg--gtgcccatataccgaaggtttgacctttcccgaagacactaagaatctgctctgcagcaaaagaactcaatgaaaatcccctgcaacagt.............................................................................................................................................................................................................................................................................................
.....................................................................................................................................................................................................................................................................................................................................................aatcagctgacaatcgtttcttatttctcgcctatttgacgaggaaaggagtacttctctaatggaaacttgggaaaatttctgtttgcttggtgtgcccatataccggaggtttgacctttcccgaagacactaagaatctgctctgcagcaaaagagctcaatgaaactcccatgcaacagt.............................................................................................................................................................................................................................................................................................
HSP  2	e-value: 1.0E-56	bit: 222.0	Len: 116	Query Start:242	Query End:357	Subject Strand: NEGATIVE	Subject Start: 629	Subject End: 744
.................................................................................................................................................................................................................................................ctgaaaaacacttaagaatcagctctgcggcaaaagacttcaatgaaagtcctataaaatagttgcaaacagctgatagttagcgcattgatgggagcataatcagctgacaatcg...................................................................................................................................................................................................................................................................................................................................................................................................................................................................
.................................................................................................................................................................................................................................................ctgaaaaacacttaagaatcagctctgcggcaaaagacttcaatgaaagtcctataaaatagttgcaaacagctgatagttagcgcattgatgggagcagaatcagctgacaatcg...................................................................................................................................................................................................................................................................................................................................................................................................................................................................
HSP  3	e-value: 4.0E-29	bit: 131.0	Len: 110	Query Start:63	Query End:172	Subject Strand: NEGATIVE	Subject Start: 749	Subject End: 858
..............................................................gagaccgttgcacaaaaacccttccaccccctcatatcaatcaagacagatacaagcattgatttgacgaagaaaggagagcttcatgcggtctctctgcaaacctcaag............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
..............................................................gagactgttgcacaataaccctctccccctctcatattgatcaagacagacacaagcattgatttgacgaagaaaggagagcttcatgcaatctctctgcaaacctcaag............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
HSP  4	e-value: 1.0E-10	bit: 69.9	Len: 108	Query Start:182	Query End:289	Subject Strand: NEGATIVE	Subject Start: 66	Subject End: 173
.....................................................................................................................................................................................atggaaacttgggaaaatttctgtttgtttg--gtgcccatatgtttgaggtttgatctttcctgaaaaacacttaagaatcagctctgcggcaaaagacttcaatgaaa.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
.....................................................................................................................................................................................atggaaacttgggaaaatttctgtttgcttggtgtgcccatataccggaggtttgacctttcccg-aagacac-taagaatctgctctgcagcaaaagagctcaatgaaa.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................

Subject: NC_002950_PG1626_PG1630|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1710547,1711911]|1365
HSP  1	e-value: 1.0E-75	bit: 285.0	Len: 184	Query Start:345	Query End:528	Subject Strand: POSITIVE	Subject Start: 1071	Subject End: 1254
........................................................................................................................................................................................................................................................................................................................................................cagctgacaatcgtttcttatttctcgcctatttgacgaggaaaggagtacttctctaatggaaacttggggaaatttctatttgctcggtgcccatataccgaaggtttgacctttcccgaagacactaagaatctgctctgcagcaaaagaactcaatgaaaatcccctgcaacagtctcaa........................................................................................................................................................................................................................................................................................
........................................................................................................................................................................................................................................................................................................................................................cagccgacaatcgtttcttatttctcgcctatttgacgaggaaaggagtgcttctctaatggaaacttggggaaatttctgtttgctcgatgtccatataccggaggtttgacctttcccgaagacactaagaatcagctctgcagcaaaagagctcaatgaaactcccccgcaacagtctcaa........................................................................................................................................................................................................................................................................................
HSP  2	e-value: 4.0E-54	bit: 214.0	Len: 116	Query Start:242	Query End:357	Subject Strand: POSITIVE	Subject Start: 558	Subject End: 673
.................................................................................................................................................................................................................................................ctgaaaaacacttaagaatcagctctgcggcaaaagacttcaatgaaagtcctataaaatagttgcaaacagctgatagttagcgcattgatgggagcataatcagctgacaatcg...................................................................................................................................................................................................................................................................................................................................................................................................................................................................
.................................................................................................................................................................................................................................................ctgaaaaacacttaagaatcagctctgcggcaaaagacttcaatgaaagtcctataaaatagttgcaaatagctgatagttagcgcattgatgggagcagaatcagctgacaatcg...................................................................................................................................................................................................................................................................................................................................................................................................................................................................
HSP  3	e-value: 3.0E-30	bit: 135.0	Len: 84	Query Start:89	Query End:172	Subject Strand: POSITIVE	Subject Start: 470	Subject End: 553
........................................................................................ccccctcatatcaatcaagacagatacaagcattgatttgacgaagaaaggagagcttcatgcggtctctctgcaaacctcaag............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
........................................................................................ccccctcatatcgatcaagacagatacaagcattgattcgacgaagaaaagagagcttcatgcgatctctctgcaaacctcaag............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
HSP  4	e-value: 8.0E-9	bit: 63.9	Len: 108	Query Start:182	Query End:289	Subject Strand: POSITIVE	Subject Start: 1129	Subject End: 1234
.....................................................................................................................................................................................atggaaacttgggaaaatttctgtttgtttggtgcccatatgtttgaggtttgatctttcctgaaaaacacttaagaatcagctctgcggcaaaagacttcaatgaaa.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
.....................................................................................................................................................................................atggaaacttggggaaatttctgtttgctcgatgtccatataccggaggtttgacctttcccgaaga-cact-aagaatcagctctgcagcaaaagagctcaatgaaa.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................

Subject: NC_002950_PG1697_PG1701|type II restriction endonuclease, putative:glutamine amidotransferase, class II/dipeptidase|POSITIVE:NEGATIVE|[1785135,1786234]|1100
HSP  1	e-value: 2.0E-74	bit: 281.0	Len: 186	Query Start:342	Query End:527	Subject Strand: POSITIVE	Subject Start: 646	Subject End: 831
.....................................................................................................................................................................................................................................................................................................................................................aatcagctgacaatcgtttcttatttctcgcctatttgacgaggaaaggagtacttctctaatggaaacttggggaaatttctatttgctcggtgcccatataccgaaggtttgacctttcccgaagacactaagaatctgctctgcagcaaaagaactcaatgaaaatcccctgcaacagtctca.........................................................................................................................................................................................................................................................................................
.....................................................................................................................................................................................................................................................................................................................................................aatcagccgacaatcgtttcttatttctcgcctatttgacgaggaaaggagtacttctctaatggaaacttgggaaaatttctgtttgctcgatgtccatataccggaggtttgatctttcccaaaggcactaagaatcagctctgcagcaaaagagctcaatgaaaatcccctgcaacagtctca.........................................................................................................................................................................................................................................................................................
HSP  2	e-value: 1.0E-56	bit: 222.0	Len: 116	Query Start:242	Query End:357	Subject Strand: POSITIVE	Subject Start: 217	Subject End: 332
.................................................................................................................................................................................................................................................ctgaaaaacacttaagaatcagctctgcggcaaaagacttcaatgaaagtcctataaaatagttgcaaacagctgatagttagcgcattgatgggagcataatcagctgacaatcg...................................................................................................................................................................................................................................................................................................................................................................................................................................................................
.................................................................................................................................................................................................................................................ctgaaaaacacttaagaatcagctctgcggcaaaagacttcaatgaaagtcctataaaatagttgcaaacagctgatagttagcgcattgatgggagcagaatcagctgacaatcg...................................................................................................................................................................................................................................................................................................................................................................................................................................................................
HSP  3	e-value: 7.0E-28	bit: 127.0	Len: 80	Query Start:93	Query End:172	Subject Strand: POSITIVE	Subject Start: 133	Subject End: 212
............................................................................................ctcatatcaatcaagacagatacaagcattgatttgacgaagaaaggagagcttcatgcggtctctctgcaaacctcaag............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
............................................................................................ctcatattgatcaagacagacacaagcattgatttgacgaagaaaggagagcttcatgcgatctctctgcaaacctcaag............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
HSP  4	e-value: 3.0E-11	bit: 71.9	Len: 108	Query Start:182	Query End:289	Subject Strand: POSITIVE	Subject Start: 707	Subject End: 812
.....................................................................................................................................................................................atggaaacttgggaaaatttctgtttgtttggtgcccatatgtttgaggtttgatctttcctgaaaaacacttaagaatcagctctgcggcaaaagacttcaatgaaa.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
.....................................................................................................................................................................................atggaaacttgggaaaatttctgtttgctcgatgtccatataccggaggtttgatctttcc-caaaggcac-taagaatcagctctgcagcaaaagagctcaatgaaa.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................

Subject: NC_002950_PG0639_PG0645|signal peptide peptidase SppA, 67K type:hypothetical protein|NEGATIVE:NEGATIVE|[693091,696972]|3882
HSP  1	e-value: 1.0E-66	bit: 256.0	Len: 153	Query Start:375	Query End:527	Subject Strand: POSITIVE	Subject Start: 1289	Subject End: 1441
......................................................................................................................................................................................................................................................................................................................................................................................atttgacgaggaaaggagtacttctctaatggaaacttggggaaatttctatttgctcggtgcccatataccgaaggtttgacctttcccgaagacactaagaatctgctctgcagcaaaagaactcaatgaaaatcccctgcaacagtctca.........................................................................................................................................................................................................................................................................................
......................................................................................................................................................................................................................................................................................................................................................................................atttgacgaggaaaggaatacttctctgatggaaacttggtgaaatttctatttgctcggtgcccatataccggaggtttgacctttcccgaagacactaagaatctgctctgcagcaaaagagttcaatgaaaatcccctgcaacagtctca.........................................................................................................................................................................................................................................................................................
HSP  2	e-value: 1.0E-56	bit: 222.0	Len: 116	Query Start:242	Query End:357	Subject Strand: POSITIVE	Subject Start: 484	Subject End: 599
.................................................................................................................................................................................................................................................ctgaaaaacacttaagaatcagctctgcggcaaaagacttcaatgaaagtcctataaaatagttgcaaacagctgatagttagcgcattgatgggagcataatcagctgacaatcg...................................................................................................................................................................................................................................................................................................................................................................................................................................................................
.................................................................................................................................................................................................................................................ctgaaaaacacttaagaatcagctctgcggcaaaagacttcaatgaaagtcctataaaatagttgcaaacagctgatagttagcgcattgatgggagcagaatcagctgacaatcg...................................................................................................................................................................................................................................................................................................................................................................................................................................................................
HSP  3	e-value: 1.0E-41	bit: 172.0	Len: 103	Query Start:70	Query End:172	Subject Strand: POSITIVE	Subject Start: 377	Subject End: 479
.....................................................................ttgcacaaaaacccttccaccccctcatatcaatcaagacagatacaagcattgatttgacgaagaaaggagagcttcatgcggtctctctgcaaacctcaag............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
.....................................................................ttgcacaataacccttccaccccctcatatcgatcaagacagacacaagcattgatttgacgaagaaaggagagcttcatgcgatctctctgcaaacctcaag............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
HSP  4	e-value: 2.0E-9	bit: 65.9	Len: 109	Query Start:181	Query End:289	Subject Strand: POSITIVE	Subject Start: 1316	Subject End: 1422
....................................................................................................................................................................................gatggaaacttgggaaaatttctgtttgtttggtgcccatatgtttgaggtttgatctttcctgaaaaacacttaagaatcagctctgcggcaaaagacttcaatgaaa.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
....................................................................................................................................................................................gatggaaacttggtgaaatttctatttgctcggtgcccatataccggaggtttgacctttcccg-aagacac-taagaatctgctctgcagcaaaagagttcaatgaaa.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................

Subject: NC_002950_PG0232_PG0234|zinc carboxypeptidase, putative:immunoreactive 23 kDa antigen PG66|NEGATIVE:NEGATIVE|[270014,270850]|837
HSP  1	e-value: 1.0E-53	bit: 212.0	Len: 152	Query Start:375	Query End:526	Subject Strand: NEGATIVE	Subject Start: 220	Subject End: 373
......................................................................................................................................................................................................................................................................................................................................................................................atttgacgaggaaaggagtacttctctaatggaaacttggggaaatttctatttgctcg--gtgcccatataccgaaggtttgacctttcccgaagacactaagaatctgctctgcagcaaaagaactcaatgaaaatcccctgcaacagtctc..........................................................................................................................................................................................................................................................................................
......................................................................................................................................................................................................................................................................................................................................................................................atttgacgaggaaaggagtacttctctaatggaaacttgatgaaatttctgtttgcttgctgtgtccatataccgaaggtttgacctttcccgaagacactaagaatctgctctgcagcaaaagagctcaatgaaactcccatgcaacaatctc..........................................................................................................................................................................................................................................................................................
HSP  2	e-value: 3.0E-48	bit: 194.0	Len: 114	Query Start:242	Query End:355	Subject Strand: NEGATIVE	Subject Start: 491	Subject End: 604
.................................................................................................................................................................................................................................................ctgaaaaacacttaagaatcagctctgcggcaaaagacttcaatgaaagtcctataaaatagttgcaaacagctgatagttagcgcattgatgggagcataatcagctgacaat.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................
.................................................................................................................................................................................................................................................ctgaaaaacacttaagaatcaactctgcggcaaaagacttcaatgaaagtcctataaaatagttgcaaatagctgatagttagcgcattgacgggagcagaatcagctgacaat.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................
HSP  3	e-value: 3.0E-30	bit: 135.0	Len: 111	Query Start:62	Query End:172	Subject Strand: NEGATIVE	Subject Start: 609	Subject End: 717
.............................................................tgagaccgttgcacaaaaacccttccaccccctcatatcaatcaagacagatacaagcattgatttgacgaagaaaggagagcttcatgcggtctctctgcaaacctcaag............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
.............................................................tgagaccgttatacaataacccttcc--cccctcatattgatcaagacagataaatgcattgatttgacgaagaaaggagagcttcatgcgatctctctgcaaacctcaag............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................

Subject: NC_002950_PG0973_PG0975|alpha-1,2-mannosidase family protein:PhoH family protein|POSITIVE:POSITIVE|[1036623,1037423]|801
HSP  1	e-value: 9.0E-52	bit: 206.0	Len: 153	Query Start:375	Query End:527	Subject Strand: NEGATIVE	Subject Start: 68	Subject End: 222
......................................................................................................................................................................................................................................................................................................................................................................................atttgacgaggaaaggagtacttctctaatggaaacttggggaaatttctatttgctcg--gtgcccatataccgaaggtttgacctttcccgaagacactaagaatctgctctgcagcaaaagaactcaatgaaaatcccctgcaacagtctca.........................................................................................................................................................................................................................................................................................
......................................................................................................................................................................................................................................................................................................................................................................................atttgacgaggaaaggagtacttctctaatggaaacttgatgaaatttctgtttgcttgctgtgtccatataccgaaggtttgacctttcccgaagacactaagaatcagctctgcagcaaaagagctcgatgaaactcccatgcaacagtctca.........................................................................................................................................................................................................................................................................................
HSP  2	e-value: 9.0E-52	bit: 206.0	Len: 116	Query Start:242	Query End:357	Subject Strand: NEGATIVE	Subject Start: 502	Subject End: 617
.................................................................................................................................................................................................................................................ctgaaaaacacttaagaatcagctctgcggcaaaagacttcaatgaaagtcctataaaatagttgcaaacagctgatagttagcgcattgatgggagcataatcagctgacaatcg...................................................................................................................................................................................................................................................................................................................................................................................................................................................................
.................................................................................................................................................................................................................................................ctgaaaaacacttaagaatcagctctgcggcaaaagacttcaatgaaagtcctataaaatagttgcaaacagctgatagttagcgtattgatgggagcagagtcagctgacaatcg...................................................................................................................................................................................................................................................................................................................................................................................................................................................................
HSP  3	e-value: 2.0E-40	bit: 168.0	Len: 113	Query Start:60	Query End:172	Subject Strand: NEGATIVE	Subject Start: 622	Subject End: 733
...........................................................aatgagaccgttgcacaaaaacccttccaccccctcatatcaatcaagacagatacaagcattgatttgacgaagaaaggagagcttcatgcggtctctctgcaaacctcaag............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
...........................................................aatgagaccgttgcacaataaccctccc-ccccctcatatcgatcaagacagatacatgcattgatttgacgaagaaaggagagcttcatgcgatctctctgcaaacctcaag............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................

Subject: NC_002950_PG0205_PG0209|peptide chain release factor 3:formate/nitrite transporter|NEGATIVE:POSITIVE|[242184,243370]|1187
HSP  1	e-value: 2.0E-49	bit: 198.0	Len: 116	Query Start:242	Query End:357	Subject Strand: NEGATIVE	Subject Start: 756	Subject End: 871
.................................................................................................................................................................................................................................................ctgaaaaacacttaagaatcagctctgcggcaaaagacttcaatgaaagtcctataaaatagttgcaaacagctgatagttagcgcattgatgggagcataatcagctgacaatcg...................................................................................................................................................................................................................................................................................................................................................................................................................................................................
.................................................................................................................................................................................................................................................ctgaaaaacacttaagaatcagctctgcggcaaaagacttcaatgaaagccctataaaatagttgcaaatagctgatagttagcgcattgatgggagcagaatcagttgacaatcg...................................................................................................................................................................................................................................................................................................................................................................................................................................................................
HSP  2	e-value: 2.0E-31	bit: 139.0	Len: 122	Query Start:406	Query End:527	Subject Strand: NEGATIVE	Subject Start: 292	Subject End: 413
.....................................................................................................................................................................................................................................................................................................................................................................................................................gaaacttggggaaatttctatttgctcggtgcccatataccgaaggtttgacctttcccgaagacactaagaatctgctctgcagcaaaagaactcaatgaaaatcccctgcaacagtctca.........................................................................................................................................................................................................................................................................................
.....................................................................................................................................................................................................................................................................................................................................................................................................................gaaacttggggaaatttctgtttgctcgatgtccatataccggaggtttgatctttcccaaaggcactaagaatcagctctgcagcaaaagagttcaataaaaatcccgtgtaacagtctca.........................................................................................................................................................................................................................................................................................
HSP  3	e-value: 4.0E-23	bit: 111.0	Len: 96	Query Start:63	Query End:158	Subject Strand: NEGATIVE	Subject Start: 888	Subject End: 983
..............................................................gagaccgttgcacaaaaacccttccaccccctcatatcaatcaagacagatacaagcattgatttgacgaagaaaggagagcttcatgcggtctct..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
..............................................................gagacctttgcacaataacccttccacctcctcatatcgatcaaggcagacacaagcattgatttgacgaagagaggactgcttcatgcgatctct..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
HSP  4	e-value: 9.0E-12	bit: 73.8	Len: 172	Query Start:114	Query End:285	Subject Strand: NEGATIVE	Subject Start: 315	Subject End: 486
.................................................................................................................acaagcattgatttgacgaagaaaggagagcttcatgcggtctctctgcaaacctcaagaatacccc---gatggaaacttgggaaaatttctgtttgtttggtgcccatatgtttgaggtttgatctttcctgaaaaacacttaagaatcagctctgcggcaaaagacttcaat...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
.................................................................................................................acaagcattgatttgacgaaaaaaggagtgcttcatg-tgagtctctgcgaacctcaagtatccacctctgaaagaaacttggggaaatttctgtttgctcgatgtccatataccggaggtttgatctttcc-caaaggcac-taagaatcagctctgcagcaaaagagttcaat...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................

Subject: NC_002950_PG1684_PG1685|hypothetical protein:hypothetical protein|POSITIVE:NEGATIVE|[1771544,1772305]|762
HSP  1	e-value: 5.0E-38	bit: 161.0	Len: 211	Query Start:79	Query End:289	Subject Strand: NEGATIVE	Subject Start: 249	Subject End: 458
..............................................................................aacccttccaccccctcatatcaatcaagacagatacaagcattgatttgacgaagaaaggagagcttcatgcggtctctctgcaaacctcaagaatacccc---gatggaaacttgggaaaatttctgtttgtttggtgcccatatgtttgaggtttgatctttcctgaaaaacacttaagaatcagctctgcggcaaaagacttcaatgaaa.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
..............................................................................aaccctcctaccccctcatattgatcaagacagatacaagcattgatttgacgaagaaaggagcgcttcatgcag--tatctgcaaacctcaagtatacacctctgatggaagcttggggaaatttctgtttactcggtgcccatatacttgagatttgacctttcctg-aaaacac-aaggaatcagccctgcagcaaaagaattcaatgaaa.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
HSP  2	e-value: 1.0E-29	bit: 133.0	Len: 131	Query Start:398	Query End:528	Subject Strand: NEGATIVE	Subject Start: 229	Subject End: 359
.............................................................................................................................................................................................................................................................................................................................................................................................................ctctaatggaaacttggggaaatttctatttgctcggtgcccatataccgaaggtttgacctttcccgaagacactaagaatctgctctgcagcaaaagaactcaatgaaaatcccctgcaacagtctcaa........................................................................................................................................................................................................................................................................................
.............................................................................................................................................................................................................................................................................................................................................................................................................ctctgatggaagcttggggaaatttctgtttactcggtgcccatatacttgagatttgacctttcctgaaaacacaaggaatcagccctgcagcaaaagaattcaatgaaaatcccgtgcaacagtctcaa........................................................................................................................................................................................................................................................................................

Subject: NC_002950_PG0747_PG0749|sigma-54 dependent DNA-binding response regulator:hypothetical protein|NEGATIVE:NEGATIVE|[795385,795627]|243
HSP  1	e-value: 1.0E-23	bit: 113.0	Len: 121	Query Start:406	Query End:526	Subject Strand: NEGATIVE	Subject Start: 61	Subject End: 181
.....................................................................................................................................................................................................................................................................................................................................................................................................................gaaacttggggaaatttctatttgctcggtgcccatataccgaaggtttgacctttcccgaagacactaagaatctgctctgcagcaaaagaactcaatgaaaatcccctgcaacagtctc..........................................................................................................................................................................................................................................................................................
.....................................................................................................................................................................................................................................................................................................................................................................................................................gaaactgggggaaatatctatttgctcggtgctcatgtcctggaggtttaacctttcacgaaggcacaaagaatcagctctgcggaaaaagagttcaatgaaaatcccctgcaacagtctc..........................................................................................................................................................................................................................................................................................
HSP  2	e-value: 5.0E-7	bit: 58.0	Len: 53	Query Start:125	Query End:177	Subject Strand: NEGATIVE	Subject Start: 192	Subject End: 243
............................................................................................................................tttgacgaagaaaggagagcttcatgcggtctctctgcaaacctcaagaatac.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
............................................................................................................................tttgacgaagaaaggaatgcttcatgcgg-atctctgcaaacctcaagtatac.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
HSP  3	e-value: 8.0E-6	bit: 54.0	Len: 35	Query Start:255	Query End:289	Subject Strand: NEGATIVE	Subject Start: 79	Subject End: 113
..............................................................................................................................................................................................................................................................aagaatcagctctgcggcaaaagacttcaatgaaa.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
..............................................................................................................................................................................................................................................................aagaatcagctctgcggaaaaagagttcaatgaaa.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................

Subject: NC_002950_PG1426_PG1427|hypothetical protein:thiol protease/hemagglutinin PrtT precursor, putative|NEGATIVE:NEGATIVE|[1511401,1511954]|554
HSP  1	e-value: 1.0E-13	bit: 79.8	Len: 119	Query Start:89	Query End:207	Subject Strand: NEGATIVE	Subject Start: 280	Subject End: 398
........................................................................................ccccctcatatcaatcaagacagatacaagcattgatttgacgaagaaaggagagcttcatgcggtctctctgcaaacctcaagaata-ccccgatggaaacttgggaaaatttctgttt.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
........................................................................................ccccctcatattgatgaagacaaacacaagcattgatttgacgaagaaaagagagcttcatgtag-gtctctgcgaacctcaaaaatatacctgaaggaaacttggggaaatctctgttt.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................

Inter-species Hit: Count: 0

Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================
GAGCAUUUAUCCUUUUCAGAACUUCGAAUGAUCUCUCGCCGGCGAAUCGGUUUCAUAACAAUGAGACCGUUGCACAAAAACCCUUCCACCCCCUCAUAUCAAUCAAGACAGAUACAAGCAUUGAUUUGACGAAGAAAGGAGAGCUUCAUGCGGUCUCUCUGCAAACCUCAAGAAUACCCCGAUGGAAACUUGGGAAAAUUUCUGUUUGUUUGGUGCCCAUAUGUUUGAGGUUUGAUCUUUCCUGAAAAACACUUAAGAAUCAGCUCUGCGGCAAAAGACUUCAAUGAAAGUCCUAUAAAAUAGUUGCAAACAGCUGAUAGUUAGCGCAUUGAUGGGAGCAUAAUCAGCUGACAAUCGUUUCUUAUUUCUCGCCUAUUUGACGAGGAAAGGAGUACUUCUCUAAUGGAAACUUGGGGAAAUUUCUAUUUGCUCGGUGCCCAUAUACCGAAGGUUUGACCUUUCCCGAAGACACUAAGAAUCUGCUCUGCAGCAAAAGAACUCAAUGAAAAUCCCCUGCAACAGUCUCAACAGUGCAAGAGUCGAAAUAACUAAAUAUGUUGUGUUAUGAAAAGGGAGCUAUAUCAGAAUCCGAAAAAAUGGCGAAAAUCAAUUUGUUGUUGAAGCAAAACUUGUAAGUUGCACUUUAAUAACUAAGCAUUGCCAUUAACCAAUUUAUGCUUUAAUCUUUAUUUCGUCUGAAUAUCUUACCUUUGGUGAAAUUCUUUUACGAAGCUAUGCUUGUAAAUAGAAACCUGAAAUCAAUAGACGCAUAAAAUCAUAAUUACAAUCAUAAUUUUUGCUCAUCUCU
(((((.......(((((((..(((((...((((....((..((((..(((((((((....)))))))))))))............................(((......)))....))...))))...)))))...((((((((......)).)))))).(((((((((((.....(((((.(....))))))................(((...)))....))))))))))).......)))))))...........((.(((((...(((...(((((......)))))..........((((((..((((((((.((...(.((....)).)...)).))))))))....(((((((((.(((((((.(.....).))))))).((((((.((((.((.((....(((.((((((..((...((..((((((......)))))).))...))..)))))).))).)).))))))..)))))).......))))....)))))........))))))...........))).))))).))..........(((((((((((((((...(((..((.....))..))).....((((((((.......((.((((((((((...((((....))))...)))))))))).))...))))))))......(((((((((((...((.(((((...........(((((...)))))..(((((((((.((((...))))))))).))))....))))).)))))).))))))).)))))).))))).)))).....)))))...... (-194.40)

Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================
AGAGAUGAGCAAAAAUUAUGAUUGUAAUUAUGAUUUUAUGCGUCUAUUGAUUUCAGGUUUCUAUUUACAAGCAUAGCUUCGUAAAAGAAUUUCACCAAAGGUAAGAUAUUCAGACGAAAUAAAGAUUAAAGCAUAAAUUGGUUAAUGGCAAUGCUUAGUUAUUAAAGUGCAACUUACAAGUUUUGCUUCAACAACAAAUUGAUUUUCGCCAUUUUUUCGGAUUCUGAUAUAGCUCCCUUUUCAUAACACAACAUAUUUAGUUAUUUCGACUCUUGCACUGUUGAGACUGUUGCAGGGGAUUUUCAUUGAGUUCUUUUGCUGCAGAGCAGAUUCUUAGUGUCUUCGGGAAAGGUCAAACCUUCGGUAUAUGGGCACCGAGCAAAUAGAAAUUUCCCCAAGUUUCCAUUAGAGAAGUACUCCUUUCCUCGUCAAAUAGGCGAGAAAUAAGAAACGAUUGUCAGCUGAUUAUGCUCCCAUCAAUGCGCUAACUAUCAGCUGUUUGCAACUAUUUUAUAGGACUUUCAUUGAAGUCUUUUGCCGCAGAGCUGAUUCUUAAGUGUUUUUCAGGAAAGAUCAAACCUCAAACAUAUGGGCACCAAACAAACAGAAAUUUUCCCAAGUUUCCAUCGGGGUAUUCUUGAGGUUUGCAGAGAGACCGCAUGAAGCUCUCCUUUCUUCGUCAAAUCAAUGCUUGUAUCUGUCUUGAUUGAUAUGAGGGGGUGGAAGGGUUUUUGUGCAACGGUCUCAUUGUUAUGAAACCGAUUCGCCGGCGAGAGAUCAUUCGAAGUUCUGAAAAGGAUAAAUGCUC
..((((..((((((((((((((....))))))))))).))))))).(((((((...(((((..(((((((((...)))).))))).((((.(((((...)))..)).))))....)))))..))))))).((((......(((...(((((.((((((((..........))))...)))).)))))..))).......(((((((((((......((((.((((((((.......((((((..(((((.......(((((..(((((((.........)))))))((((.((((((((((((....(((((((...(.((((((((.(((..(((((((....((((((..((.....((((((........))))))......))..))))))...(((((.....(((.....))).....((((((.....))))))......)))))...((..(((.......)))..)).....)))))))..))).)))..))))).)........))))))).....)))))))))))).)))).))))).......))))).....))))))..(((((((((......(((...))).......((((....((((...........))))..)))))))))))))....(((((((((..((((((((((..((((((..((((((.((........)).))))))...))))))..).)).)))).)))..)))...))))))..))))).))).))))......))))).))))))......(((((....)))))..)))).. (-208.44)

Find mRNA Target Using  Conserved IGS================================================
5'END mRNA Target Prediction===================================
Score	srna_start	srna_end	target_start	tegart_end	seq_id
784	110	61	209	161	NC_002950:PG0975|5end_PhoH_family_protein_1037284..1037514_POSITIVE
722	140	91	229	179	NC_002950:PG1294|5end_ferrous_iron_transport_protein_B_1372047..1372277_POSITIVE
645	158	112	154	108	NC_002950:PG1251|5end_hypothetical_protein_1327779..1328009_POSITIVE
351	99	63	228	192	NC_002950:PG0572|5end_hypothetical_protein_627571..627801_NEGATIVE
340	69	22	184	132	NC_002950:PG0310|5end_nitroreductase_family_protein_345559..345789_NEGATIVE
338	76	33	100	61	NC_002950:PG2218|5end_potassium_uptake_protein_TrkA_2331580..2331810_POSITIVE
331	350	313	65	26	NC_002950:PG1647|5end_cardiolipin_synthetase_1726273..1726503_POSITIVE
324	50	9	164	108	NC_002950:PG1143|5end_sugar_dehydrogenase,_UDP-glucose/GDP-mannose_dehydrogenase_family_1227198..1227428_NEGATIVE
322	186	143	205	157	NC_002950:PG0660|5end_nitroreductase_family_protein_709695..709925_NEGATIVE
319	364	326	213	171	NC_002950:PG1975|5end_hemagglutinin_protein_HagC_2063218..2063448_POSITIVE
315	90	43	93	40	NC_002950:PG2074|5end_hypothetical_protein_2174661..2174891_NEGATIVE
315	90	43	93	40	NC_002950:PG1670|5end_hypothetical_protein_1755853..1756083_NEGATIVE
315	90	43	93	40	NC_002950:PG1265|5end_hypothetical_protein_1345182..1345412_NEGATIVE
315	90	43	93	40	NC_002950:PG0102|5end_hypothetical_protein_121003..121233_POSITIVE
314	186	148	47	4	NC_002950:PG0661|5end_hypothetical_protein_709853..710083_NEGATIVE
313	50	2	207	142	NC_002950:PG0890|5end_alkaline_phosphatase,_putative_951332..951562_POSITIVE
313	450	404	169	116	NC_002950:PG0204|5end_hypothetical_protein_240507..240737_NEGATIVE
311	51	11	75	32	NC_002950:PG1874|5end_hypothetical_protein_1969660..1969890_NEGATIVE
311	368	325	70	25	NC_002950:PG0840|5end_hypothetical_protein_898372..898602_POSITIVE
308	466	421	68	30	NC_002950:PG1959|5end_ribosomal_protein_L33_2048405..2048635_NEGATIVE

3'END mRNA Target Prediction===================================
Score	srna_start	srna_end	target_start	tegart_end	seq_id
680	490	441	55	6	NC_002950:PG1338|3end_umuC_protein_1419624..1419774_POSITIVE
338	76	33	47	8	NC_002950:PG2217|3end_1-deoxy-D-xylulose-5-phosphate_synthase_2331607..2331757_POSITIVE
336	169	121	75	18	NC_002950:PG1797|3end_DNA-binding_response_regulator/sensor_histidine_kinase_1892978..1893128_POSITIVE
327	169	129	56	6	NC_002950:PG1401|3end_beta-eliminating_lyase_1483399..1483549_NEGATIVE
326	419	371	147	87	NC_002950:PG1095|3end_RNA_methyltransferase,_TrmA_family_1161702..1161852_POSITIVE
319	360	312	55	3	NC_002950:PG1742|3end_hypothetical_protein_1827506..1827656_POSITIVE
318	187	141	57	14	NC_002950:PG1751|3end_aminotransferase,_class_V_1838490..1838640_POSITIVE
314	50	1	131	94	NC_002950:PG1276|3end_DNA-binding_protein,_histone-like_family_1353531..1353681_POSITIVE
314	50	1	131	94	NC_002950:PG0566|3end_DNA-binding_protein,_histone-like_family_622935..623085_NEGATIVE
313	550	505	55	1	NC_002950:PG0973|3end_alpha-1,2-mannosidase_family_protein_1036562..1036712_POSITIVE
311	51	11	88	45	NC_002950:PG1875|3end_hemolysin_1969647..1969797_NEGATIVE
311	368	325	92	47	NC_002950:PG0839|3end_hypothetical_protein_898474..898624_POSITIVE
308	466	421	49	11	NC_002950:PG1960|3end_ribosomal_protein_L28_2048424..2048574_NEGATIVE
305	194	154	68	26	NC_002950:PG1070|3end_L-lysine_2,3-aminomutase_1137959..1138109_POSITIVE
305	506	461	75	19	NC_002950:PG0340|3end_hypothetical_protein_376436..376586_POSITIVE
301	130	81	86	27	NC_002950:PG2037|3end_hypothetical_protein_2137591..2137741_NEGATIVE
301	194	160	78	37	NC_002950:PG0004|3end_NAD-dependent_deacetylase_3752..3902_POSITIVE
298	49	3	111	60	NC_002950:PG0572|3end_hypothetical_protein_627434..627584_NEGATIVE
297	471	431	51	7	NC_002950:PG1285|3end_glucosamine-6-phosphate_deaminase_1364941..1365091_POSITIVE
297	217	179	126	77	NC_002950:PG0278|3end_hypothetical_protein_310477..310627_POSITIVE