Origin IGS: aaactactacggatcatacgcgcttttgggcgtatgatccactttataagagaggctgtgccgaagtgttttcggcacagcctctcttatattcacttggcccacttagtcctgagataatattaacgtcagttcggcgtaagaaaacgccaatgtattcgttccctgattagcggtttacacactaagatcttgggagttataggttgttccgttcaggcaattgtatagggggcaatcctgcttttgcttggatcgaaccaacattgaaattcggattgcttttgaccgaatgttgcagtccgtacagggagatgggctataccacagggcaagatggcggtactccatagaggataacgggctatcccgtacagctcttcgagctacgctgtagagcccggcgcggtgagccctacagcgtagcgagccgagccgtagagttccgctccgggagccgtagaggtggccgagctgagccgtagagcccggcgcagcgagccctacagcgtagctcgaagagccgtagagcgcagctcggtacgctctacggcgtagcccgagtcgctgtagggcgtagctcgaccccccttcggagtatattccgaacggctataaaacaatgaggattcgatctgaagaaaaacatgcaatatgctgtttgtcagcgtatttcacttctcagttcaaagatttcagcttcgagaggctccgacatccgatgagacgtcaaacataaaaaagtaacgcaatgggatcaagggacgagtacgttagatgtagccaaaaggattacaacgtacccttagctccgatttatgaaaaatatttgtcggtggggtttaagat .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 atcttaaaccccaccgacaaatatttttcataaatcggagctaagggtacgttgtaatccttttggctacatctaacgtactcgtcccttgatcccattgcgttacttttttatgtttgacgtctcatcggatgtcggagcctctcgaagctgaaatctttgaactgagaagtgaaatacgctgacaaacagcatattgcatgtttttcttcagatcgaatcctcattgttttatagccgttcggaatatactccgaaggggggtcgagctacgccctacagcgactcgggctacgccgtagagcgtaccgagctgcgctctacggctcttcgagctacgctgtagggctcgctgcgccgggctctacggctcagctcggccacctctacggctcccggagcggaactctacggctcggctcgctacgctgtagggctcaccgcgccgggctctacagcgtagctcgaagagctgtacgggatagcccgttatcctctatggagtaccgccatcttgccctgtggtatagcccatctccctgtacggactgcaacattcggtcaaaagcaatccgaatttcaatgttggttcgatccaagcaaaagcaggattgccccctatacaattgcctgaacggaacaacctataactcccaagatcttagtgtgtaaaccgctaatcagggaacgaatacattggcgttttcttacgccgaactgacgttaatattatctcaggactaagtgggccaagtgaatataagagaggctgtgccgaaaacacttcggcacagcctctcttataaagtggatcatacgcccaaaagcgcgtatgatccgtagtagttt Mask Tandem Repeat Region ================================================ aaactactacggatcatacgcgcttttgggcgtatgatccactttataagagaggctgtgccgaagtgttttcggcacagcctctcttatattcacttggcccacttagtcctgagataatattaacgtcagttcggcgtaagaaaacgccaatgtattcgttccctgattagcggtttacacactaagatcttgggagttataggttgttccgttcaggcaattgtatagggggcaatcctgcttttgcttggatcgaaccaacattgaaattcggattgcttttgaccgaatgttgcagtccgtacagggagatgggctataccacagggcaagatggcggtactccatagaggataacgggctatcccgtacagctcttcgagctacgctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtacgctctacggcgtagcccgagtcgctgtagggcgtagctcgaccccccttcggagtatattccgaacggctataaaacaatgaggattcgatctgaagaaaaacatgcaatatgctgtttgtcagcgtatttcacttctcagttcaaagatttcagcttcgagaggctccgacatccgatgagacgtcaaacataaaaaagtaacgcaatgggatcaagggacgagtacgttagatgtagccaaaaggattacaacgtacccttagctccgatttatgaaaaatatttgtcggtggggtttaagat Find is-nt database================================================ Query_seq: PG1297:PG1300|PG1297:PG1300:ribosomal protein S1:hypothetical protein:-><-:1377771..1378619 849 aaactactacggatcatacgcgcttttgggcgtatgatccactttataagagaggctgtgccgaagtgttttcggcacagcctctcttatattcacttggcccacttagtcctgagataatattaacgtcagttcggcgtaagaaaacgccaatgtattcgttccctgattagcggtttacacactaagatcttgggagttataggttgttccgttcaggcaattgtatagggggcaatcctgcttttgcttggatcgaaccaacattgaaattcggattgcttttgaccgaatgttgcagtccgtacagggagatgggctataccacagggcaagatggcggtactccatagaggataacgggctatcccgtacagctcttcgagctacgctgtagagcccggcgcggtgagccctacagcgtagcgagccgagccgtagagttccgctccgggagccgtagaggtggccgagctgagccgtagagcccggcgcagcgagccctacagcgtagctcgaagagccgtagagcgcagctcggtacgctctacggcgtagcccgagtcgctgtagggcgtagctcgaccccccttcggagtatattccgaacggctataaaacaatgaggattcgatctgaagaaaaacatgcaatatgctgtttgtcagcgtatttcacttctcagttcaaagatttcagcttcgagaggctccgacatccgatgagacgtcaaacataaaaaagtaacgcaatgggatcaagggacgagtacgttagatgtagccaaaaggattacaacgtacccttagctccgatttatgaaaaatatttgtcggtggggtttaagat Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PG1297:PG1300|PG1297:PG1300:ribosomal protein S1:hypothetical protein:-><-:1377771..1378619 849 aaactactacggatcatacgcgcttttgggcgtatgatccactttataagagaggctgtgccgaagtgttttcggcacagcctctcttatattcacttggcccacttagtcctgagataatattaacgtcagttcggcgtaagaaaacgccaatgtattcgttccctgattagcggtttacacactaagatcttgggagttataggttgttccgttcaggcaattgtatagggggcaatcctgcttttgcttggatcgaaccaacattgaaattcggattgcttttgaccgaatgttgcagtccgtacagggagatgggctataccacagggcaagatggcggtactccatagaggataacgggctatcccgtacagctcttcgagctacgctgtagagcccggcgcggtgagccctacagcgtagcgagccgagccgtagagttccgctccgggagccgtagaggtggccgagctgagccgtagagcccggcgcagcgagccctacagcgtagctcgaagagccgtagagcgcagctcggtacgctctacggcgtagcccgagtcgctgtagggcgtagctcgaccccccttcggagtatattccgaacggctataaaacaatgaggattcgatctgaagaaaaacatgcaatatgctgtttgtcagcgtatttcacttctcagttcaaagatttcagcttcgagaggctccgacatccgatgagacgtcaaacataaaaaagtaacgcaatgggatcaagggacgagtacgttagatgtagccaaaaggattacaacgtacccttagctccgatttatgaaaaatatttgtcggtggggtttaagat Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PG1297:PG1300|PG1297:PG1300:ribosomal protein S1:hypothetical protein:-><-:1377771..1378619 849 aaactactacggatcatacgcgcttttgggcgtatgatccactttataagagaggctgtgccgaagtgttttcggcacagcctctcttatattcacttggcccacttagtcctgagataatattaacgtcagttcggcgtaagaaaacgccaatgtattcgttccctgattagcggtttacacactaagatcttgggagttataggttgttccgttcaggcaattgtatagggggcaatcctgcttttgcttggatcgaaccaacattgaaattcggattgcttttgaccgaatgttgcagtccgtacagggagatgggctataccacagggcaagatggcggtactccatagaggataacgggctatcccgtacagctcttcgagctacgctgtagagcccggcgcggtgagccctacagcgtagcgagccgagccgtagagttccgctccgggagccgtagaggtggccgagctgagccgtagagcccggcgcagcgagccctacagcgtagctcgaagagccgtagagcgcagctcggtacgctctacggcgtagcccgagtcgctgtagggcgtagctcgaccccccttcggagtatattccgaacggctataaaacaatgaggattcgatctgaagaaaaacatgcaatatgctgtttgtcagcgtatttcacttctcagttcaaagatttcagcttcgagaggctccgacatccgatgagacgtcaaacataaaaaagtaacgcaatgggatcaagggacgagtacgttagatgtagccaaaaggattacaacgtacccttagctccgatttatgaaaaatatttgtcggtggggtttaagat Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 aaactactacggatcatacgcgcttttgggcgtatgatccactttataagagaggctgtgccgaagtgttttcggcacagcctctcttatattcacttggcccacttagtcctgagataatattaacgtcagttcggcgtaagaaaacgccaatgtattcgttccctgattagcggtttacacactaagatcttgggagttataggttgttccgttcaggcaattgtatagggggcaatcctgcttttgcttggatcgaaccaacattgaaattcggattgcttttgaccgaatgttgcagtccgtacagggagatgggctataccacagggcaagatggcggtactccatagaggataacgggctatcccgtacagctcttcgagctacgctgtagagcccggcgcggtgagccctacagcgtagcgagccgagccgtagagttccgctccgggagccgtagaggtggccgagctgagccgtagagcccggcgcagcgagccctacagcgtagctcgaagagccgtagagcgcagctcggtacgctctacggcgtagcccgagtcgctgtagggcgtagctcgaccccccttcggagtatattccgaacggctataaaacaatgaggattcgatctgaagaaaaacatgcaatatgctgtttgtcagcgtatttcacttctcagttcaaagatttcagcttcgagaggctccgacatccgatgagacgtcaaacataaaaaagtaacgcaatgggatcaagggacgagtacgttagatgtagccaaaaggattacaacgtacccttagctccgatttatgaaaaatatttgtcggtggggtttaagat Predict ORF larger than 30AA ================================================ Protein_Len: 35 Strand: + Start: 13 End: 117 ............ M I R A F G R M I H F I R E A V P K C F R H S L S Y I H L A H L V L R ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 35 Strand: + Start: 66 End: 170 ................................................................. M F S A Q P L L Y S L G P L S P E I I L T S V R R K K T P M Y S F P D ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 48 Strand: + Start: 207 End: 350 .............................................................................................................................................................................................................. M F R S G N C I G G N P A F A W I E P T L K F G L L L T E C C S P Y R E M G Y T T G Q D G G T P ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 57 Strand: + Start: 224 End: 394 ............................................................................................................................................................................................................................... M Y R G Q S C F C L D R T N I E I R I A F D R M L Q S V Q G D G L Y H R A R W R Y S I E D N G L S R T A L R A T L ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 42 Strand: + Start: 357 End: 482 .................................................................................................................................................................................................................................................................................................................................................................... M T G Y P V Q L F E L R C R A R R G E P Y S V A S R A V E F R S G S R R G G R A E P ............................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 30 Strand: + Start: 466 End: 555 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M A E L S R R A R R S E P Y S V A R R A V E R S S V R S T A ...................................................................................................................................................................................................................................................................................................... Protein_Len: 45 Strand: + Start: 602 End: 736 ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M P N G Y K T M R I R S E E K H A I C C L S A Y F T S Q F K D F S F E R L R H P M R R Q T ................................................................................................................. Protein_Len: 30 Strand: + Start: 655 End: 744 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M L F V S V F H F S V Q R F Q L R E A P T S D E T S N I K K ......................................................................................................... Protein_Len: 32 Strand: + Start: 752 End: 847 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M G S R D E Y V R C S Q K D Y N V P L A P I Y E K Y L S V G F K .. Protein_Len: 33 Strand: - Start: 551 End: 649 ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... P T A R T A T P R L E V G R R L I N R V A I F C H P N S R F F F M ........................................................................................................................................................................................................ Protein_Len: 54 Strand: - Start: 507 End: 668 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... L T A R L A T S R L E T R E V A Y G S D S Y P T A R G G K P T Y E S R S Y F L S S E I Q L F V H L I S N T M ..................................................................................................................................................................................... Protein_Len: 36 Strand: - Start: 390 End: 497 ..................................................................................................................................................................................................................................................................................................................................................................................................... A T S G P A T L G V A Y R A S G Y L E A G P A T S T A S S L R L A R R M ................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 53 Strand: - Start: 219 End: 377 .......................................................................................................................................................................................................................... A I T Y P A I R S K S P D F W C Q F E S Q K Q G F T A T R V P L H A I G C P L I A T S W L P Y R A I G Y M ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 38 Strand: - Start: 203 End: 316 .......................................................................................................................................................................................................... L N N R E P L Q I P P L G A K A Q I S G V N F N P N S K V S H Q L G Y L S M ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 181 End: 603 .................................................................................................................................................................................... L S G L R L T G S R S G Y L H G L Q A T S G P A A L G V A Y S S S G Y L A A R Y A R R R L G L R Q L A Y S S G G E S Y M ...................................................................................................................................................................................................................................................... Protein_Len: 36 Strand: - Start: 47 End: 154 .............................................. L L P Q A S T N E A C G R K Y E S P G S L G S I I N V D T R R L F V G M ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 32 Strand: - Start: 10 End: 105 ......... P D Y A S K P T H D V K Y S L S H R L T K P V A E R I N V Q G M ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ aaactactacggatcatacgcgcttttgggcgtatgatccactttataagagaggctgtgccgaagtgttttcggcacagcctctcttatattcacttggcccacttagtcctgagataatattaacgtcagttcggcgtaagaaaacgccaatgtattcgttccctgattagcggtttacacactaagatcttgggagttataggttgttccgttcaggcaattgtatagggggcaatcctgcttttgcttggatcgaaccaacattgaaattcggattgcttttgaccgaatgttgcagtccgtacagggagatgggctataccacagggcaagatggcggtactccatagaggataacgggctatcccgtacagctcttcgagctacgctgtagagcccggcgcggtgagccctacagcgtagcgagccgagccgtagagttccgctccgggagccgtagaggtggccgagctgagccgtagagcccggcgcagcgagccctacagcgtagctcgaagagccgtagagcgcagctcggtacgctctacggcgtagcccgagtcgctgtagggcgtagctcgaccccccttcggagtatattccgaacggctataaaacaatgaggattcgatctgaagaaaaacatgcaatatgctgtttgtcagcgtatttcacttctcagttcaaagatttcagcttcgagaggctccgacatccgatgagacgtcaaacataaaaaagtaacgcaatgggatcaagggacgagtacgttagatgtagccaaaaggattacaacgtacccttagctccgatttatgaaaaatatttgtcggtggggtttaagat Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ aaactactacggatcatacgcgcttttgggcgtatgatccactttataagagaggctgtgccgaagtgttttcggcacagcctctcttatattcacttggcccacttagtcctgagataatattaacgtcagttcggcgtaagaaaacgccaatgtattcgttccctgattagcggtttacacactaagatcttgggagttataggttgttccgttcaggcaattgtatagggggcaatcctgcttttgcttggatcgaaccaacattgaaattcggattgcttttgaccgaatgttgcagtccgtacagggagatgggctataccacagggcaagatggcggtactccatagaggataacgggctatcccgtacagctcttcgagctacgctgtagagcccggcgcggtgagccctacagcgtagcgagccgagccgtagagttccgctccgggagccgtagaggtggccgagctgagccgtagagcccggcgcagcgagccctacagcgtagctcgaagagccgtagagcgcagctcggtacgctctacggcgtagcccgagtcgctgtagggcgtagctcgaccccccttcggagtatattccgaacggctataaaacaatgaggattcgatctgaagaaaaacatgcaatatgctgtttgtcagcgtatttcacttctcagttcaaagatttcagcttcgagaggctccgacatccgatgagacgtcaaacataaaaaagtaacgcaatgggatcaagggacgagtacgttagatgtagccaaaaggattacaacgtacccttagctccgatttatgaaaaatatttgtcggtggggtttaagat Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 100 HP_score: -30.6 Tail_Score: -3.17194 Start: 45 End: 91 Full_Region: GCGTATGATCCACTT TATAAGAGAGGCTGTGCCGAAG TGT TTTCGGCACAGCCTCTCTTATA TTCACTTGGCCCACT ............................................TATAAGAGAGGCTGTGCCGAAGTGTTTTCGGCACAGCCTCTCTTATA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 100 HP_score: -26.1 Tail_Score: -3.71686 Start: 50 End: 86 Full_Region: TGATCCACTTTATAA GAGAGGCTGTGCCGAAG TGT TTTCGGCACAGCCTCTC TTATATTCACTTGGC .................................................GAGAGGCTGTGCCGAAGTGTTTTCGGCACAGCCTCTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 100 HP_score: -25.4 Tail_Score: -3.33492 Start: 50 End: 86 Full_Region: gccaagtgaatataa gagaggctgtgccgaa aacac ttcggcacagcctctc ttataaagtggatca .................................................gagaggctgtgccgaaaacacttcggcacagcctctc........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 70 HP_score: -9.0 Tail_Score: -3.49777 Start: 361 End: 403 Full_Region: tagggctcaccgcgc cgggctctacagcgtagctc gaa gagctgtacgggatagcccg ttatcctctatggag ........................................................................................................................................................................................................................................................................................................................................................................cgggctctacagcgtagctcgaagagctgtacgggatagcccg.............................................................................................................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: - Conf: 100 HP_score: -16.7 Tail_Score: -3.04263 Start: 523 End: 554 Full_Region: agcgactcgggctac gccgtagagcgta ccgagc tgcgctctacggc tcttcgagctacgct ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gccgtagagcgtaccgagctgcgctctacggc....................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 52 HP_score: -6.8 Tail_Score: -2.64912 Start: 649 End: 677 Full_Region: ATCTGAAGAAAAACA TGCAATATGCTG TTTGT CAGCGTATTTCA CTTCTCAGTTCAAAG ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAATATGCTGTTTGTCAGCGTATTTCA............................................................................................................................................................................ TransTerm Strand: - Conf: 63 HP_score: -4.6 Tail_Score: -4.16909 Start: 649 End: 677 Full_Region: ctttgaactgagaag tgaaatacgctg acaaa cagcatattgca tgtttttcttcagat ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tgaaatacgctgacaaacagcatattgca............................................................................................................................................................................ Find igs database================================================ Query_seq: PG1297:PG1300|PG1297:PG1300:ribosomal protein S1:hypothetical protein:-><-:1377771..1378619 849 aaactactacggatcatacgcgcttttgggcgtatgatccactttataagagaggctgtgccgaagtgttttcggcacagcctctcttatattcacttggcccacttagtcctgagataatattaacgtcagttcggcgtaagaaaacgccaatgtattcgttccctgattagcggtttacacactaagatcttgggagttataggttgttccgttcaggcaattgtatagggggcaatcctgcttttgcttggatcgaaccaacattgaaattcggattgcttttgaccgaatgttgcagtccgtacagggagatgggctataccacagggcaagatggcggtactccatagaggataacgggctatcccgtacagctcttcgagctacgctgtagagcccggcgcggtgagccctacagcgtagcgagccgagccgtagagttccgctccgggagccgtagaggtggccgagctgagccgtagagcccggcgcagcgagccctacagcgtagctcgaagagccgtagagcgcagctcggtacgctctacggcgtagcccgagtcgctgtagggcgtagctcgaccccccttcggagtatattccgaacggctataaaacaatgaggattcgatctgaagaaaaacatgcaatatgctgtttgtcagcgtatttcacttctcagttcaaagatttcagcttcgagaggctccgacatccgatgagacgtcaaacataaaaaagtaacgcaatgggatcaagggacgagtacgttagatgtagccaaaaggattacaacgtacccttagctccgatttatgaaaaatatttgtcggtggggtttaagat Intra-Species Hit: Count: 7 Min: 1 Max: 849 Len: 849 Subject: NC_002950_PG1297_PG1300|ribosomal protein S1:hypothetical protein|POSITIVE:NEGATIVE|[1377771,1378619]|849 HSP 1 e-value: 0.0 bit: 1683.0 Len: 849 Query Start:1 Query End:849 Subject Strand: POSITIVE Subject Start: 1 Subject End: 849 aaactactacggatcatacgcgcttttgggcgtatgatccactttataagagaggctgtgccgaagtgttttcggcacagcctctcttatattcacttggcccacttagtcctgagataatattaacgtcagttcggcgtaagaaaacgccaatgtattcgttccctgattagcggtttacacactaagatcttgggagttataggttgttccgttcaggcaattgtatagggggcaatcctgcttttgcttggatcgaaccaacattgaaattcggattgcttttgaccgaatgttgcagtccgtacagggagatgggctataccacagggcaagatggcggtactccatagaggataacgggctatcccgtacagctcttcgagctacgctgtagagcccggcgcggtgagccctacagcgtagcgagccgagccgtagagttccgctccgggagccgtagaggtggccgagctgagccgtagagcccggcgcagcgagccctacagcgtagctcgaagagccgtagagcgcagctcggtacgctctacggcgtagcccgagtcgctgtagggcgtagctcgaccccccttcggagtatattccgaacggctataaaacaatgaggattcgatctgaagaaaaacatgcaatatgctgtttgtcagcgtatttcacttctcagttcaaagatttcagcttcgagaggctccgacatccgatgagacgtcaaacataaaaaagtaacgcaatgggatcaagggacgagtacgttagatgtagccaaaaggattacaacgtacccttagctccgatttatgaaaaatatttgtcggtggggtttaagat aaactactacggatcatacgcgcttttgggcgtatgatccactttataagagaggctgtgccgaagtgttttcggcacagcctctcttatattcacttggcccacttagtcctgagataatattaacgtcagttcggcgtaagaaaacgccaatgtattcgttccctgattagcggtttacacactaagatcttgggagttataggttgttccgttcaggcaattgtatagggggcaatcctgcttttgcttggatcgaaccaacattgaaattcggattgcttttgaccgaatgttgcagtccgtacagggagatgggctataccacagggcaagatggcggtactccatagaggataacgggctatcccgtacagctcttcgagctacgctgtagagcccggcgcggtgagccctacagcgtagcgagccgagccgtagagttccgctccgggagccgtagaggtggccgagctgagccgtagagcccggcgcagcgagccctacagcgtagctcgaagagccgtagagcgcagctcggtacgctctacggcgtagcccgagtcgctgtagggcgtagctcgaccccccttcggagtatattccgaacggctataaaacaatgaggattcgatctgaagaaaaacatgcaatatgctgtttgtcagcgtatttcacttctcagttcaaagatttcagcttcgagaggctccgacatccgatgagacgtcaaacataaaaaagtaacgcaatgggatcaagggacgagtacgttagatgtagccaaaaggattacaacgtacccttagctccgatttatgaaaaatatttgtcggtggggtttaagat HSP 2 e-value: 8.0E-6 bit: 54.0 Len: 47 Query Start:45 Query End:91 Subject Strand: NEGATIVE Subject Start: 45 Subject End: 91 ............................................tataagagaggctgtgccgaagtgttttcggcacagcctctcttata...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ............................................tataagagaggctgtgccgaaaacacttcggcacagcctctcttata...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: NC_002950_PG0890_PG0893|alkaline phosphatase, putative:hydroxylamine reductase|POSITIVE:NEGATIVE|[953164,954290]|1127 HSP 1 e-value: 0.0 bit: 892.0 Len: 614 Query Start:122 Query End:735 Subject Strand: POSITIVE Subject Start: 187 Subject End: 798 .........................................................................................................................attaacgtcagttcggcgtaagaaaacgccaatgtattcgttccctgattagcggtttacacactaagatcttgggagttataggttgttccgttcaggcaattgtatagggggcaatcctgcttttgcttggatcgaaccaacattgaaattcggattgcttttgaccgaatgttgcagtccgtacagggagatgggctataccacagggcaagatggcggtactccatagaggataacgggctatcccgtacagctcttcgagctacgctgtagagcccggcgcggtgagccctacagcgtagcgagccgagccgtagagttccgctccgggagccgtagaggtggccgagctgagccgtagagcccggcgcagcgagccctacagcgtagctcgaagagccgtagagcgcagctcggtacgctctacggcgtagcccgagtcgctgtagggcgtagctcgaccccccttcggagtatattccgaacggctataaaacaatgaggattcgatctgaagaaaaacatgcaatatgctgtttgtcagcgtatttcacttctcagttcaaagatttcagcttcgagaggctccgacatccgatgagacgtcaaac.................................................................................................................. .........................................................................................................................attaacgtcagttcggcgtaagaaaacgccaatgtattcgttccccgattagcgggttacacactaagatcttgggagttataggttgttccgttcaggcaattgtatagggggcaatcctgcttctgcccggatcggaccaacattgaaattcggattgcttttgaccgaatgttgcagtccgcaccggaagatgggctataccacaaggca-gatggcggtattccgtagaggataacgggctatcccatacggctcttcgagctacgctgtagagctcggcgaggtacgctctacagcgtagcgagccgagccgtagagttccgctccgtgagccgtagatgtggccgagctgagccgtagggcccggcgcggtgagccctacagcgtagcttgaagagccgtagagcgcagctcggtacgctctacggcgtagcccgagtcgctgtagggcgtagctcgaccccctttcggcgtatgttccgaatggctataaaacaatgcggattcgatctgaag-aaaatatgcaatatgctgtttgtcagcgtatttcatttctcggttgagaaatttcagcttcgagaggcttcgacatccgatgagacgtcaaac.................................................................................................................. HSP 2 e-value: 8.0E-6 bit: 54.0 Len: 31 Query Start:498 Query End:528 Subject Strand: NEGATIVE Subject Start: 437 Subject End: 467 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cgagccctacagcgtagctcgaagagccgta................................................................................................................................................................................................................................................................................................................................. .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cgagctctacagcgtagctcgaagagccgta................................................................................................................................................................................................................................................................................................................................. Subject: NC_002950_PG1190_PG1195|glycerate dehydrogenase:8-amino-7-oxononanoate synthase|POSITIVE:POSITIVE|[1273206,1274118]|913 HSP 1 e-value: 0.0 bit: 890.0 Len: 613 Query Start:123 Query End:735 Subject Strand: NEGATIVE Subject Start: 188 Subject End: 798 ..........................................................................................................................ttaacgtcagttcggcgtaagaaaacgccaatgtattcgttccctgattagcggtttacacactaagatcttgggagttataggttgttccgttcaggcaattgtatagggggcaatcctgcttttgcttggatcgaaccaacattgaaattcggattgcttttgaccgaatgttgcagtccgtacagggagatgggctataccacagggcaagatggcggtactccatagaggataacgggctatcccgtacagctcttcgagctacgctgtagagcccggcgcggtgagccctacagcgtagcgagccgagccgtagagttccgctccgggagccgtagaggtggccgagctgagccgtagagcccggcgcagcgagccctacagcgtagctcgaagagccgtagagcgcagctcggtacgctctacggcgtagcccgagtcgctgtagggcgtagctcgaccccccttcggagtatattccgaacggctataaaacaatgaggattcgatctgaagaaaaacatgcaatatgctgtttgtcagcgtatttcacttctcagttcaaagatttcagcttcgagaggctccgacatccgatgagacgtcaaac.................................................................................................................. ..........................................................................................................................ttaacgtcagttcggcgtaagaaaacgccaatgtattcgttccaagattagcggttaacgcactaatattttggaagttataggttgttctgttcaggcaattgtatagggggcaatcctgcttctgcctggatcgaaccaacattgaaattcggattgcttttgaccgaatgttgcagtccgtatagggagatgggctataccacagggca-gatggcggtactccgtagaggatgacgagctatcccgtacggctcttcgagctacgctgtagagctcggcgaggtacgccctacagcgtagcgagccgagccgtagagttccgctccgtgagccgtagaggtggccgagctgagccgtagggcccggcgcggtgagccctacagcgtagctcgaagagccgtagagcgcagctcggtacgctctacggcgtagcccgagtcgctgtagggcgtagctcgaccccccttcggcatatgttccgaacggctataaaacaatgcggattcaatc-caggaaaaatatgcaatatgctgtttatcagcatatttcatttctcagttgaaagatttcagcttcgagaggcttcgacatccgatgagacttcaaac.................................................................................................................. HSP 2 e-value: 8.0E-6 bit: 54.0 Len: 31 Query Start:498 Query End:528 Subject Strand: POSITIVE Subject Start: 519 Subject End: 549 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cgagccctacagcgtagctcgaagagccgta................................................................................................................................................................................................................................................................................................................................. .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cgagctctacagcgtagctcgaagagccgta................................................................................................................................................................................................................................................................................................................................. Subject: NC_002950_PG1881_PG1884|hypothetical protein:alpha-L-fucosidase precursor, putative|POSITIVE:NEGATIVE|[1978107,1979057]|951 HSP 1 e-value: 0.0 bit: 670.0 Len: 495 Query Start:240 Query End:734 Subject Strand: POSITIVE Subject Start: 302 Subject End: 796 ...............................................................................................................................................................................................................................................cctgcttttgcttggatcgaaccaacattgaaattcggattgctttt--gaccgaatgttgcagtccgtacagggagatgggctataccacagggcaagatggcggtactccatagaggataacgggctatcccgtacagctcttcgagctacgctgtagagcccggcgcggtgagccctacagcgtagcgagccgagccgtagagttccgctccgggagccgtagaggtggccgagctgagccgtagagcccggcgcagcgagccctacagcgtagctcgaagagccgtagagcgcagctcggtacgctctacggcgtagcccgagtcgctgtagggcgtagctcgaccccccttcggagtatattccgaacggctataaaacaatgaggattcgatctgaagaaaaacatgcaatatgctgtttgtcagcgtatttcacttctcagttcaaagatttcagcttcgagaggctccgacatccgatgagacgtcaaa................................................................................................................... ...............................................................................................................................................................................................................................................cctgcttctgcttggatcgaaccaacattgaaattcggattgcttttttgaccgaatgttacagtccgtacagaaagatgggctataccatagggcac-atggaggtactccgtaggggatgacgagctatcccgtacagctcttcgagctacgctgtagagctcagcgaggtacgccctacagcgtagcgagccgagccgtagagttccgctccgggagctgtagaggtggccgagccgagccctagagcccggcgcgccgagccctacagcgtagctcgaagagccgtagagcgcagctcggtacgctctacggcgtagcccgagtcgctgtagggcgtagctcgaccccctttcggagtatgttccgaacggctataaaacaatgcggattcgatc-caagaaaaacatgcaatatgctgtttgtcaacgtatttcatttctcggttgagagatttcagcttcgggagacttcgacatccgatgagacgtcaaa................................................................................................................... HSP 2 e-value: 2.0E-6 bit: 56.0 Len: 32 Query Start:124 Query End:155 Subject Strand: POSITIVE Subject Start: 211 Subject End: 242 ...........................................................................................................................taacgtcagttcggcgtaagaaaacgccaatg...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ...........................................................................................................................taacgtcagttcgacgtaagaaaacgccaatg...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: NC_002950_PG0237_PG0240|uracil-DNA glycosylase:hydrolase, haloacid dehalogenase-like family|POSITIVE:NEGATIVE|[275587,276484]|898 HSP 1 e-value: 1.0E-157 bit: 555.0 Len: 357 Query Start:132 Query End:488 Subject Strand: POSITIVE Subject Start: 102 Subject End: 459 ...................................................................................................................................gttcggcgtaagaaaacgccaatgtattcgttccctgattagcggtttacacactaagatcttgggagttataggttgttccgttcaggcaattgtatagggggcaatcctgcttttgcttggatcgaaccaacattgaaattcggattgc--ttttgaccgaatgttgcagtccgtacagggagatgggctataccacagggcaagatggcggtactccatagaggataacgggctatcccgtacagctcttcgagctacgctgtagagcccggcgcggtgagccctacagcgtagcgagccgagccgtagagttccgctccgggagccgtagaggtggccgagctgagccgtagagc......................................................................................................................................................................................................................................................................................................................................................................... ...................................................................................................................................gttcggcgtaagaaaacgccaatgtattcgttccccgattagcgggttacacactaagatcttgggagttataggttattccgttcaggcaattgtatagggggcaatcctgcttctgcccggatcgaaccaacattgaaattcggattgcttttttgaccgaatgttgcagtccgtacaggaagatgggctataccacaaggc-agatggcggtacaccgtagaggataacgggctatcccgtacagctcttcgagctacgctgtagagctcggcgaggtacgctctacagcgtagcgagccgagccgtagagttccgctccgggagccgtagaggtggccgagctgagccgtagagc......................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 3.0E-82 bit: 307.0 Len: 215 Query Start:521 Query End:735 Subject Strand: POSITIVE Subject Start: 448 Subject End: 661 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gagccgtagagcgcagctcggtacgctctacggcgtagcccgagtcgctgtagggcgtagctcgaccccccttcggagtatattccgaacggctataaaacaatgaggattcgatctgaagaaaaacatgcaatatgctgtttgtcagcgtatttcacttctcagttcaaagatttcagcttcgagaggctccgacatccgatgagacgtcaaac.................................................................................................................. ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gagccgtagagcgcagctcggtacgctctacggcgtagcccgagtcgctgtagggcgtagctcgaccccctttcggcgtatgttccgaatggctataaaacaatgcggattcgatctgaag-aaaatatgcaatatcctgtttgtcagcgtatttcatttctcggttgagagatttcagcttcgagaggcttcgacatccaatgagacgtcaaac.................................................................................................................. Subject: NC_002950_PG1837_PG1840|hemagglutinin protein HagA:hypothetical protein|POSITIVE:POSITIVE|[1936795,1937241]|447 HSP 1 e-value: 1.0E-137 bit: 492.0 Len: 324 Query Start:302 Query End:625 Subject Strand: NEGATIVE Subject Start: 108 Subject End: 430 .............................................................................................................................................................................................................................................................................................................tccgtacagggagatgggctataccacagggcaagatggcggtactccatagaggataacgggctatcccgtacagctcttcgagctacgctgtagagcccggcgcggtgagccctacagcgtagcgagccgagccgtagagttccgctccgggagccgtagaggtggccgagctgagccgtagagcccggcgcagcgagccctacagcgtagctcgaagagccgtagagcgcagctcggtacgctctacggcgtagcccgagtcgctgtagggcgtagctcgaccccccttcggagtatattccgaacggctataaaacaatg................................................................................................................................................................................................................................ .............................................................................................................................................................................................................................................................................................................tccgaacaggaagatgggctataccacagggca-gatggtggtactccgtagaggataacgggctatcccgtacggctcttcgagctacgctgtagagctcagcgaggtacgctctacagcgtagcgagccgagccgtagagttccgctccgggagccgtagaggtggccgagctgagccgtagagcttggcgcggtgagccctacagcgtagctcgaagagccgtagagcgcagctcggtacgctctacggcgtagcccgagtcgctgtagggcgtagctcgacccccttccggagtatattccgaacggctataaaacaatg................................................................................................................................................................................................................................ Subject: NC_002950_PG1954_PG1956|NAD dependent epimerase/reductase-related protein:4-hydroxybutyrate CoA-transferase|POSITIVE:NEGATIVE|[2045673,2046304]|632 HSP 1 e-value: 6.0E-90 bit: 333.0 Len: 232 Query Start:504 Query End:735 Subject Strand: POSITIVE Subject Start: 237 Subject End: 467 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ctacagcgtagctcgaagagccgtagagcgcagctcggtacgctctacggcgtagcccgagtcgctgtagggcgtagctcgaccccccttcggagtatattccgaacggctataaaacaatgaggattcgatctgaagaaaaacatgcaatatgctgtttgtcagcgtatttcacttctcagttcaaagatttcagcttcgagaggctccgacatccgatgagacgtcaaac.................................................................................................................. .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ctacagcgtagctcgaagagccgtagagcgcagctcggtacgctctacggcgtagcccgagtcgctgtagggcgtagctcgaccccctttcggcgtatgttccgaacggctataaaacaatgcggattcgatc-caagaaaaacatgcaatatgctgtttgtcaatgtatttcatttgtctgttgagaggtttcagcttcgagaggctccgacgtccgatgagacgtcaaac.................................................................................................................. HSP 2 e-value: 5.0E-35 bit: 151.0 Len: 136 Query Start:292 Query End:427 Subject Strand: POSITIVE Subject Start: 114 Subject End: 248 ...................................................................................................................................................................................................................................................................................................aatgttgcagtccgtacagggagatgggctataccacagggcaagatggcggtactccatagaggataacgggctatcccgtacagctcttcgagctacgctgtagagcccggcgcggtgagccctacagcgtagc...................................................................................................................................................................................................................................................................................................................................................................................................................................... ...................................................................................................................................................................................................................................................................................................aatgttacagtccgtacagaaagatgggctataccatagggca-gatggcggtacaccatagaggatgacgagctatcccgtacggctcttcgagctacgctgtagagctcggcgaggtacgctctacagcgtagc...................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 3 e-value: 8.0E-6 bit: 54.0 Len: 31 Query Start:498 Query End:528 Subject Strand: NEGATIVE Subject Start: 194 Subject End: 224 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cgagccctacagcgtagctcgaagagccgta................................................................................................................................................................................................................................................................................................................................. .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cgagctctacagcgtagctcgaagagccgta................................................................................................................................................................................................................................................................................................................................. Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AAACUACUACGGAUCAUACGCGCUUUUGGGCGUAUGAUCCACUUUAUAAGAGAGGCUGUGCCGAAGUGUUUUCGGCACAGCCUCUCUUAUAUUCACUUGGCCCACUUAGUCCUGAGAUAAUAUUAACGUCAGUUCGGCGUAAGAAAACGCCAAUGUAUUCGUUCCCUGAUUAGCGGUUUACACACUAAGAUCUUGGGAGUUAUAGGUUGUUCCGUUCAGGCAAUUGUAUAGGGGGCAAUCCUGCUUUUGCUUGGAUCGAACCAACAUUGAAAUUCGGAUUGCUUUUGACCGAAUGUUGCAGUCCGUACAGGGAGAUGGGCUAUACCACAGGGCAAGAUGGCGGUACUCCAUAGAGGAUAACGGGCUAUCCCGUACAGCUCUUCGAGCUACGCUGUAGAGCCCGGCGCGGUGAGCCCUACAGCGUAGCGAGCCGAGCCGUAGAGUUCCGCUCCGGGAGCCGUAGAGGUGGCCGAGCUGAGCCGUAGAGCCCGGCGCAGCGAGCCCUACAGCGUAGCUCGAAGAGCCGUAGAGCGCAGCUCGGUACGCUCUACGGCGUAGCCCGAGUCGCUGUAGGGCGUAGCUCGACCCCCCUUCGGAGUAUAUUCCGAACGGCUAUAAAACAAUGAGGAUUCGAUCUGAAGAAAAACAUGCAAUAUGCUGUUUGUCAGCGUAUUUCACUUCUCAGUUCAAAGAUUUCAGCUUCGAGAGGCUCCGACAUCCGAUGAGACGUCAAACAUAAAAAAGUAACGCAAUGGGAUCAAGGGACGAGUACGUUAGAUGUAGCCAAAAGGAUUACAACGUACCCUUAGCUCCGAUUUAUGAAAAAUAUUUGUCGGUGGGGUUUAAGAU ..........(((((((((((.(....).)))))))))))....((((((((((((((((((((((...)))))))))))))))))))))).((..(((((...((((....)))).........(((((.....(((((......))))).(((((((((((((.(((((.(((...(((.......((.((.((((((..(((((((((((.(....((....))..).))))))).)))).((((..(..(((((((((..(((((.....((((((((.(((....)))....))))))))....(((.(.((((((((.(((((((((.............(((.....)))...((((((((.((.....(((((((((((((((((((((.....(((.((((..(((((((.((...(.((((.((((......)))).)))))....)).)))).))).)))).((((.((((.......)))).))))..)))))))))))))))))))))))).((((((((..........)))))))))).)))))))).))).)))).))..)))))))).))))(((((((((....))))))).))........))))).)).)))))))..).)))).......(((((((((.....)))))))))..)))))).)).)).........(((((....)))))..(((.((......)).)))............))).))).....))))).)))))))))))))..))))).)))))...)).........(((((.....(((((.(((.....)))...))))).)))))....... (-341.00) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AUCUUAAACCCCACCGACAAAUAUUUUUCAUAAAUCGGAGCUAAGGGUACGUUGUAAUCCUUUUGGCUACAUCUAACGUACUCGUCCCUUGAUCCCAUUGCGUUACUUUUUUAUGUUUGACGUCUCAUCGGAUGUCGGAGCCUCUCGAAGCUGAAAUCUUUGAACUGAGAAGUGAAAUACGCUGACAAACAGCAUAUUGCAUGUUUUUCUUCAGAUCGAAUCCUCAUUGUUUUAUAGCCGUUCGGAAUAUACUCCGAAGGGGGGUCGAGCUACGCCCUACAGCGACUCGGGCUACGCCGUAGAGCGUACCGAGCUGCGCUCUACGGCUCUUCGAGCUACGCUGUAGGGCUCGCUGCGCCGGGCUCUACGGCUCAGCUCGGCCACCUCUACGGCUCCCGGAGCGGAACUCUACGGCUCGGCUCGCUACGCUGUAGGGCUCACCGCGCCGGGCUCUACAGCGUAGCUCGAAGAGCUGUACGGGAUAGCCCGUUAUCCUCUAUGGAGUACCGCCAUCUUGCCCUGUGGUAUAGCCCAUCUCCCUGUACGGACUGCAACAUUCGGUCAAAAGCAAUCCGAAUUUCAAUGUUGGUUCGAUCCAAGCAAAAGCAGGAUUGCCCCCUAUACAAUUGCCUGAACGGAACAACCUAUAACUCCCAAGAUCUUAGUGUGUAAACCGCUAAUCAGGGAACGAAUACAUUGGCGUUUUCUUACGCCGAACUGACGUUAAUAUUAUCUCAGGACUAAGUGGGCCAAGUGAAUAUAAGAGAGGCUGUGCCGAAAACACUUCGGCACAGCCUCUCUUAUAAAGUGGAUCAUACGCCCAAAAGCGCGUAUGAUCCGUAGUAGUUU .........(((((......................((.((...((((((((((((..((....)).))))....)))))))).......(((((...(((.(((((((((....((((((((((....)))))))))).....((((((.......))))))...))))))))).....((((.....)))).....))).(((((((((..(((((((((..(((((.....((((((((((((......)))))((((((((.(.((((..((.((..((((....((((((.((((((((.(((.((.((((..((((((((((((((((((((((((((((((((((.((((..((((((((((((..(((..((((........)))).(((.(((.(.......).))))))...)))..))))))))))))..)))).))))))))))))))))))))))))))))))).))).)))).)).))).)))))))).)))..)))...))))..)).))..))))).))))))))..)))).)))....((((((...........))))))..)))))..))))))))).))).)))))).))))))).))...........(((((..((.....))..((((((((..(((..(((((.(....))))))))).)))).........(((((((......)))))))......))))........))))).....))))).........(((((((((((((((((((((.....)))))))))))))))))))))....(((((((((((.(....).))))))))))).......... (-342.30) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 995 400 351 206 157 NC_002950:PG1840|5end_hypothetical_protein_1937102..1937332_POSITIVE 542 510 462 198 149 NC_002950:PG0607|5end_hypothetical_protein_662552..662782_POSITIVE 512 500 451 207 147 NC_002950:PG0071|5end_UDP-3-O-acyl-GlcNAc_deacetylase/beta-hydroxyacyl-[acyl_carrier_protein]_dehydratase_FabZ_86119..86349_NEGATIVE 506 595 552 68 20 NC_002950:PG1992|5end_glucose-inhibited_division_protein_A_2081410..2081640_POSITIVE 503 560 514 214 154 NC_002950:PG0854|5end_hypothetical_protein_914870..915100_POSITIVE 493 488 441 106 52 NC_002950:PG1006|5end_hypothetical_protein_1066478..1066708_NEGATIVE 490 466 426 183 135 NC_002950:PG0327|5end_hypothetical_protein_362061..362291_NEGATIVE 487 470 421 66 3 NC_002950:PG1731|5end_3-dehydroquinate_dehydratase_1820103..1820333_NEGATIVE 471 570 522 211 161 NC_002950:PG2074|5end_hypothetical_protein_2174661..2174891_NEGATIVE 471 570 522 211 161 NC_002950:PG1670|5end_hypothetical_protein_1755853..1756083_NEGATIVE 471 570 522 211 161 NC_002950:PG1265|5end_hypothetical_protein_1345182..1345412_NEGATIVE 471 570 522 211 161 NC_002950:PG0102|5end_hypothetical_protein_121003..121233_POSITIVE 470 499 454 216 161 NC_002950:PG1250|5end_hypothetical_protein_1327846..1328076_NEGATIVE 466 519 471 216 151 NC_002950:PG1968|5end_hypothetical_protein_2058564..2058794_NEGATIVE 464 449 401 68 22 NC_002950:PG2187|5end_1,4-dihydroxy-2-naphthoate_octaprenyltransferase_2294643..2294873_NEGATIVE 462 440 391 177 118 NC_002950:PG1817|5end_hypothetical_protein_1913035..1913265_NEGATIVE 461 509 462 100 58 NC_002950:PG0470|5end_hypothetical_protein_511883..512113_NEGATIVE 457 515 471 64 18 NC_002950:PG1313|5end_dipeptidase-related_protein_1392282..1392512_POSITIVE 456 577 531 192 144 NC_002950:PG2036|5end_ion_transporter_2136561..2136791_POSITIVE 454 489 442 63 3 NC_002950:PG2109|5end_thiamine-phosphate_pyrophosphorylase_2219452..2219682_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 727 90 46 45 1 NC_002950:PG1297|3end_ribosomal_protein_S1_1377710..1377860_POSITIVE 535 400 353 61 8 NC_002950:PG0261|3end_ISPg3,_transposase_293862..294012_NEGATIVE 533 90 48 71 31 NC_002950:PG0506|3end_arginine-specific_cysteine_proteinase_547625..547775_POSITIVE 519 498 451 109 48 NC_002950:PG1391|3end_hypothetical_protein_1472961..1473111_POSITIVE 518 570 523 141 85 NC_002950:PG0569|3end_hypothetical_protein_624697..624847_NEGATIVE 493 488 441 66 12 NC_002950:PG1007|3end_transcriptional_regulator,_GntR_family_1066518..1066668_NEGATIVE 490 466 426 89 41 NC_002950:PG0328|3end_imidazolonepropionase_362155..362305_NEGATIVE 480 567 523 104 51 NC_002950:PG1012|3end_tRNA-i(6)A37_modification_enzyme_MiaB_1070089..1070239_NEGATIVE 472 100 51 72 16 NC_002950:PG0769|3end_fibronectin_type_III_domain_protein_822555..822705_NEGATIVE 464 449 401 78 32 NC_002950:PG2188|3end_diaminopimelate_decarboxylase_2294633..2294783_NEGATIVE 461 499 454 66 3 NC_002950:PG0148|3end_sigma-54-dependent_transcriptional_regulator_169654..169804_NEGATIVE 457 494 453 52 14 NC_002950:PG2089|3end_hypothetical_protein_2189904..2190054_POSITIVE 454 489 442 66 6 NC_002950:PG2110|3end_thiamine_biosynthesis_protein_ThiC_2219449..2219599_NEGATIVE 453 409 361 62 23 NC_002950:PG0211|3end_cobalamin_biosynthesis_protein_CbiG/precorrin-4_C11-methyltransferase_245966..246116_NEGATIVE 448 489 441 112 60 NC_002950:PG1943|3end_hypothetical_protein_2028974..2029124_NEGATIVE 445 477 431 134 83 NC_002950:PG0745|3end_lactoylglutathione_lyase,_putative_791982..792132_NEGATIVE 445 597 551 112 50 NC_002950:PG0594|3end_RNA_polymerase_sigma-70_factor_652991..653141_POSITIVE 444 99 51 64 13 NC_002950:PG1754|3end_hypothetical_protein_1842284..1842434_POSITIVE 443 450 405 144 96 NC_002950:PG0646|3end_iron_compound_ABC_transporter,_ATP-binding_protein_698070..698220_NEGATIVE 442 598 553 130 79 NC_002950:PG2150|3end_LysM_domain_protein_2257667..2257817_NEGATIVE