Origin IGS: cccatatagccggccgaatcgtcatcatcaacgtgagtcccccacaagggtacccttatctcatcataattcgcttttagtttacgcgcccaaaatttccggcttatcacccctgaaaacgtggtgcgtaaacttttttgttttggcgcgagaaataaataattcccgcgccagaacgaaaaacatctcgcgccaaaacgggaaaattctcgcgcgccttttcaggaaaggcacgcgtcacttttttatactgacgactgacgtgacgtgtactgaaaaaatgaggcttgaggaggtcaaaaaaagcagtaattgtgaagaaacatcggaccgtttccgatcagttttacgccaagatcgatattgcaacattgtaatttcaaatagtgtcgtttcctgatttcggttgactcttgggagtcaatcctgaggtcgcttgcttaatgttgcaccggtggggggaatctgcaggttgatcacaatgaagagagtaacgaaaagttattgtaactttgccgtgcttttgagagatatgaccatataatgtccaatctattagcaacaagacgattaaaaaacaa .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 ttgttttttaatcgtcttgttgctaatagattggacattatatggtcatatctctcaaaagcacggcaaagttacaataacttttcgttactctcttcattgtgatcaacctgcagattccccccaccggtgcaacattaagcaagcgacctcaggattgactcccaagagtcaaccgaaatcaggaaacgacactatttgaaattacaatgttgcaatatcgatcttggcgtaaaactgatcggaaacggtccgatgtttcttcacaattactgctttttttgacctcctcaagcctcattttttcagtacacgtcacgtcagtcgtcagtataaaaaagtgacgcgtgcctttcctgaaaaggcgcgcgagaattttcccgttttggcgcgagatgtttttcgttctggcgcgggaattatttatttctcgcgccaaaacaaaaaagtttacgcaccacgttttcaggggtgataagccggaaattttgggcgcgtaaactaaaagcgaattatgatgagataagggtacccttgtgggggactcacgttgatgatgacgattcggccggctatatggg Mask Tandem Repeat Region ================================================ cccatatagccggccgaatcgtcatcatcaacgtgagtcccccacaagggtacccttatctcatcataattcgcttttagtttacgcgcccaaaatttccggcttatcacccctgaaaacgtggtgcgtaaacttttttgttttggcgcgagaaataaataattcccgcgccagaacgaaaaacatctcgcgccaaaacgggaaaattctcgcgcgccttttcaggaaaggcacgcgtcacttttttatactgacgactgacgtgacgtgtactgaaaaaatgaggcttgaggaggtcaaaaaaagcagtaattgtgaagaaacatcggaccgtttccgatcagttttacgccaagatcgatattgcaacattgtaatttcaaatagtgtcgtttcctgatttcggttgactcttgggagtcaatcctgaggtcgcttgcttaatgttgcaccggtggggggaatctgcaggttgatcacaatgaagagagtaacgaaaagttattgtaactttgccgtgcttttgagagatatgaccatataatgtccaatctattagcaacaagacgattaaaaaacaa Find is-nt database================================================ Query_seq: PG1296:PG1297|PG1296:PG1297:hypothetical protein:ribosomal protein S1:->->:1375390..1375970 581 cccatatagccggccgaatcgtcatcatcaacgtgagtcccccacaagggtacccttatctcatcataattcgcttttagtttacgcgcccaaaatttccggcttatcacccctgaaaacgtggtgcgtaaacttttttgttttggcgcgagaaataaataattcccgcgccagaacgaaaaacatctcgcgccaaaacgggaaaattctcgcgcgccttttcaggaaaggcacgcgtcacttttttatactgacgactgacgtgacgtgtactgaaaaaatgaggcttgaggaggtcaaaaaaagcagtaattgtgaagaaacatcggaccgtttccgatcagttttacgccaagatcgatattgcaacattgtaatttcaaatagtgtcgtttcctgatttcggttgactcttgggagtcaatcctgaggtcgcttgcttaatgttgcaccggtggggggaatctgcaggttgatcacaatgaagagagtaacgaaaagttattgtaactttgccgtgcttttgagagatatgaccatataatgtccaatctattagcaacaagacgattaaaaaacaa Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PG1296:PG1297|PG1296:PG1297:hypothetical protein:ribosomal protein S1:->->:1375390..1375970 581 cccatatagccggccgaatcgtcatcatcaacgtgagtcccccacaagggtacccttatctcatcataattcgcttttagtttacgcgcccaaaatttccggcttatcacccctgaaaacgtggtgcgtaaacttttttgttttggcgcgagaaataaataattcccgcgccagaacgaaaaacatctcgcgccaaaacgggaaaattctcgcgcgccttttcaggaaaggcacgcgtcacttttttatactgacgactgacgtgacgtgtactgaaaaaatgaggcttgaggaggtcaaaaaaagcagtaattgtgaagaaacatcggaccgtttccgatcagttttacgccaagatcgatattgcaacattgtaatttcaaatagtgtcgtttcctgatttcggttgactcttgggagtcaatcctgaggtcgcttgcttaatgttgcaccggtggggggaatctgcaggttgatcacaatgaagagagtaacgaaaagttattgtaactttgccgtgcttttgagagatatgaccatataatgtccaatctattagcaacaagacgattaaaaaacaa Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PG1296:PG1297|PG1296:PG1297:hypothetical protein:ribosomal protein S1:->->:1375390..1375970 581 cccatatagccggccgaatcgtcatcatcaacgtgagtcccccacaagggtacccttatctcatcataattcgcttttagtttacgcgcccaaaatttccggcttatcacccctgaaaacgtggtgcgtaaacttttttgttttggcgcgagaaataaataattcccgcgccagaacgaaaaacatctcgcgccaaaacgggaaaattctcgcgcgccttttcaggaaaggcacgcgtcacttttttatactgacgactgacgtgacgtgtactgaaaaaatgaggcttgaggaggtcaaaaaaagcagtaattgtgaagaaacatcggaccgtttccgatcagttttacgccaagatcgatattgcaacattgtaatttcaaatagtgtcgtttcctgatttcggttgactcttgggagtcaatcctgaggtcgcttgcttaatgttgcaccggtggggggaatctgcaggttgatcacaatgaagagagtaacgaaaagttattgtaactttgccgtgcttttgagagatatgaccatataatgtccaatctattagcaacaagacgattaaaaaacaa Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 cccatatagccggccgaatcgtcatcatcaacgtgagtcccccacaagggtacccttatctcatcataattcgcttttagtttacgcgcccaaaatttccggcttatcacccctgaaaacgtggtgcgtaaacttttttgttttggcgcgagaaataaataattcccgcgccagaacgaaaaacatctcgcgccaaaacgggaaaattctcgcgcgccttttcaggaaaggcacgcgtcacttttttatactgacgactgacgtgacgtgtactgaaaaaatgaggcttgaggaggtcaaaaaaagcagtaattgtgaagaaacatcggaccgtttccgatcagttttacgccaagatcgatattgcaacattgtaatttcaaatagtgtcgtttcctgatttcggttgactcttgggagtcaatcctgaggtcgcttgcttaatgttgcaccggtggggggaatctgcaggttgatcacaatgaagagagtaacgaaaagttattgtaactttgccgtgcttttgagagatatgaccatataatgtccaatctattagcaacaagacgattaaaaaacaa Predict ORF larger than 30AA ================================================ Protein_Len: 31 Strand: + Start: 159 End: 251 .............................................................................................................................................................. M I P A P E R K T S R A K T G K F S R A F S G K A R V T F L Y .......................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 95 End: 397 .............................................................................................. M S G L S P L K T W C V N F F V L A R E I N N S R A R T K N I S R Q N G K I L A R L F R K G T R H F F I L T T D V T C T ........................................................................................................................................................................................ Protein_Len: 35 Strand: + Start: 437 End: 541 .................................................................................................................................................................................................................................................................................................................................................................................................................................................... M L N V A P V G G I C R L I T M K R V T K S Y C N F A V L L R D M T I ........................................ Protein_Len: 34 Strand: - Start: 480 End: 581 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... L S S L L S F N N Y S Q R A K S L Y S W I I D L R N A V L R N F F M Protein_Len: 60 Strand: - Start: 383 End: 571 .............................................................................................................................................................................................................................................................................................................................................................................................. N G S K P Q S K P T L G S T A Q K I N C R H P S D A P Q D C H L S Y R F T I T V K G H K Q S I H G Y L T W D I L L L V M .......... Protein_Len: 42 Strand: - Start: 300 End: 425 ........................................................................................................................................................................................................................................................................................................... F F C Y N H L F M P G N G I L K V G L D I N C C Q L K L Y H R K R I E T S E Q S D M ............................................................................................................................................................ Protein_Len: 46 Strand: - Start: 241 End: 378 ................................................................................................................................................................................................................................................ K K I S V V S T V H V S F I L S S S T L F L L L Q S S V D S R K R D T K R W S R Y Q L M T M ........................................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 110 End: 313 ............................................................................................................. K K N Q R S F Y I I G A G S R F V D R A L V P F N E R A K E P F A R T V K K Y Q R S V H R T S F F H P K L L D F F A T M ............................................................................................................................................................................................................................................................................ Protein_Len: 50 Strand: - Start: 85 End: 234 .................................................................................... A G L I E P K D G R F V H H T F K K T K A R S I F L E R A L V F F M E R W F P F I R A R R K L F P M ........................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 36 Strand: - Start: 3 End: 110 .. M Y G A S D D D D V H T G W L P V R I E D Y N A K L K R A W F K R S I M ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... cccatatagccggccgaatcgtcatcatcaacgtgagtcccccacaagggtacccttatctcatcataattcgcttttagtttacgcgcccaaaatttccggcttatcacccctgaaaacgtggtgcgtaaacttttttgttttggcgcgagaaataaataattcccgcgccagaacgaaaaacatctcgcgccaaaacgggaaaattctcgcgcgccttttcaggaaaggcacgcgtcacttttttatactgacgactgacgtgacgtgtactgaaaaaatgaggcttgaggaggtcaaaaaaagcagtaattgtgaagaaacatcggaccgtttccgatcagttttacgccaagatcgatattgcaacattgtaatttcaaatagtgtcgtttcctgatttcggttgactcttgggagtcaatcctgaggtcgcttgcttaatgttgcaccggtggggggaatctgcaggttgatcacaatgaagagagtaacgaaaagttattgtaactttgccgtgcttttgagagatatgaccatataatgtccaatctattagcaacaagacgattaaaaaacaa Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ cccatatagccggccgaatcgtcatcatcaacgtgagtcccccacaagggtacccttatctcatcataattcgcttttagtttacgcgcccaaaatttccggcttatcacccctgaaaacgtggtgcgtaaacttttttgttttggcgcgagaaataaataattcccgcgccagaacgaaaaacatctcgcgccaaaacgggaaaattctcgcgcgccttttcaggaaaggcacgcgtcacttttttatactgacgactgacgtgacgtgtactgaaaaaatgaggcttgaggaggtcaaaaaaagcagtaattgtgaagaaacatcggaccgtttccgatcagttttacgccaagatcgatattgcaacattgtaatttcaaatagtgtcgtttcctgatttcggttgactcttgggagtcaatcctgaggtcgcttgcttaatgttgcaccggtggggggaatctgcaggttgatcacaatgaagagagtaacgaaaagttattgtaactttgccgtgcttttgagagatatgaccatataatgtccaatctattagcaacaagacgattaaaaaacaa Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 81 HP_score: -11.0 Tail_Score: -3.53343 Start: 133 End: 184 Full_Region: gttttggcgcgagat gtttttcgttctggcgcgggaatt attt atttctcgcgccaaaacaaaaaag tttacgcaccacgtt ....................................................................................................................................gtttttcgttctggcgcgggaattatttatttctcgcgccaaaacaaaaaag............................................................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: - Conf: 87 HP_score: -14.5 Tail_Score: -2.71791 Start: 134 End: 183 Full_Region: ttttggcgcgagatg tttttcgttctggcgcgggaatt attt atttctcgcgccaaaacaaaaaa gtttacgcaccacgt .....................................................................................................................................tttttcgttctggcgcgggaattatttatttctcgcgccaaaacaaaaaa.............................................................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: + Conf: 77 HP_score: -3.4 Tail_Score: -5.31275 Start: 207 End: 241 Full_Region: GCCAAAACGGGAAAA TTCTCGCGCGCCTTTT CAG GAAAGGCACGCGTCAC TTTTTTATACTGACG ..............................................................................................................................................................................................................TTCTCGCGCGCCTTTTCAGGAAAGGCACGCGTCAC.................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 86 HP_score: -13.0 Tail_Score: -2.9676 Start: 211 End: 237 Full_Region: AAACGGGAAAATTCT CGCGCGCCTTTT CAG GAAAGGCACGCG TCACTTTTTTATACT ..................................................................................................................................................................................................................CGCGCGCCTTTTCAGGAAAGGCACGCG........................................................................................................................................................................................................................................................................................................................................................ TransTerm Strand: - Conf: 60 HP_score: -3.1 Tail_Score: -4.183 Start: 324 End: 342 Full_Region: tcttggcgtaaaact gatcgga aacgg tccgatg tttcttcacaattac ...................................................................................................................................................................................................................................................................................................................................gatcggaaacggtccgatg............................................................................................................................................................................................................................................... Find igs database================================================ Query_seq: PG1296:PG1297|PG1296:PG1297:hypothetical protein:ribosomal protein S1:->->:1375390..1375970 581 cccatatagccggccgaatcgtcatcatcaacgtgagtcccccacaagggtacccttatctcatcataattcgcttttagtttacgcgcccaaaatttccggcttatcacccctgaaaacgtggtgcgtaaacttttttgttttggcgcgagaaataaataattcccgcgccagaacgaaaaacatctcgcgccaaaacgggaaaattctcgcgcgccttttcaggaaaggcacgcgtcacttttttatactgacgactgacgtgacgtgtactgaaaaaatgaggcttgaggaggtcaaaaaaagcagtaattgtgaagaaacatcggaccgtttccgatcagttttacgccaagatcgatattgcaacattgtaatttcaaatagtgtcgtttcctgatttcggttgactcttgggagtcaatcctgaggtcgcttgcttaatgttgcaccggtggggggaatctgcaggttgatcacaatgaagagagtaacgaaaagttattgtaactttgccgtgcttttgagagatatgaccatataatgtccaatctattagcaacaagacgattaaaaaacaa Intra-Species Hit: Count: 2 Min: 1 Max: 581 Len: 581 Subject: NC_002950_PG1296_PG1297|hypothetical protein:ribosomal protein S1|POSITIVE:POSITIVE|[1375390,1375970]|581 HSP 1 e-value: 0.0 bit: 1110.0 Len: 581 Query Start:1 Query End:581 Subject Strand: POSITIVE Subject Start: 1 Subject End: 581 cccatatagccggccgaatcgtcatcatcaacgtgagtcccccacaagggtacccttatctcatcataattcgcttttagtttacgcgcccaaaatttccggcttatcacccctgaaaacgtggtgcgtaaacttttttgttttggcgcgagaaataaataattcccgcgccagaacgaaaaacatctcgcgccaaaacgggaaaattctcgcgcgccttttcaggaaaggcacgcgtcacttttttatactgacgactgacgtgacgtgtactgaaaaaatgaggcttgaggaggtcnnnnnnngcagtaattgtgaagaaacatcggaccgtttccgatcagttttacgccaagatcgatattgcaacattgtaatttcaaatagtgtcgtttcctgatttcggttgactcttgggagtcaatcctgaggtcgcttgcttaatgttgcaccggtggggggaatctgcaggttgatcacaatgaagagagtaacgaaaagttattgtaactttgccgtgcttttgagagatatgaccatataatgtccaatctattagcaacaagacgattaaaaaacaa cccatatagccggccgaatcgtcatcatcaacgtgagtcccccacaagggtacccttatctcatcataattcgcttttagtttacgcgcccaaaatttccggcttatcacccctgaaaacgtggtgcgtaaacttttttgttttggcgcgagaaataaataattcccgcgccagaacgaaaaacatctcgcgccaaaacgggaaaattctcgcgcgccttttcaggaaaggcacgcgtcacttttttatactgacgactgacgtgacgtgtactgaaaaaatgaggcttgaggaggtcaaaaaaagcagtaattgtgaagaaacatcggaccgtttccgatcagttttacgccaagatcgatattgcaacattgtaatttcaaatagtgtcgtttcctgatttcggttgactcttgggagtcaatcctgaggtcgcttgcttaatgttgcaccggtggggggaatctgcaggttgatcacaatgaagagagtaacgaaaagttattgtaactttgccgtgcttttgagagatatgaccatataatgtccaatctattagcaacaagacgattaaaaaacaa Subject: NC_002950_PG1679_PG1681|hypothetical protein:glycogen debranching enzyme, archaeal type, putative|POSITIVE:POSITIVE|[1765331,1766551]|1221 HSP 1 e-value: 1.0E-6 bit: 56.0 Len: 116 Query Start:80 Query End:195 Subject Strand: NEGATIVE Subject Start: 873 Subject End: 988 ...............................................................................gtttacgcgcccaaaatttccggcttatcacccctgaaaacgtggtgcgtaaacttttttgttttggcgcgagaaataaataattcccgcgccagaacgaaaaacatctcgcgcca.................................................................................................................................................................................................................................................................................................................................................................................................. ...............................................................................gtttacgcgccaaaattttcctgtttataacgccataaaacatggtgcgagaactttttcgttttggcgtgggaagtaaaaaaattacgagccaaaacgaaaaaaatctcgcgcca.................................................................................................................................................................................................................................................................................................................................................................................................. Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ CCCAUAUAGCCGGCCGAAUCGUCAUCAUCAACGUGAGUCCCCCACAAGGGUACCCUUAUCUCAUCAUAAUUCGCUUUUAGUUUACGCGCCCAAAAUUUCCGGCUUAUCACCCCUGAAAACGUGGUGCGUAAACUUUUUUGUUUUGGCGCGAGAAAUAAAUAAUUCCCGCGCCAGAACGAAAAACAUCUCGCGCCAAAACGGGAAAAUUCUCGCGCGCCUUUUCAGGAAAGGCACGCGUCACUUUUUUAUACUGACGACUGACGUGACGUGUACUGAAAAAAUGAGGCUUGAGGAGGUCAAAAAAAGCAGUAAUUGUGAAGAAACAUCGGACCGUUUCCGAUCAGUUUUACGCCAAGAUCGAUAUUGCAACAUUGUAAUUUCAAAUAGUGUCGUUUCCUGAUUUCGGUUGACUCUUGGGAGUCAAUCCUGAGGUCGCUUGCUUAAUGUUGCACCGGUGGGGGGAAUCUGCAGGUUGAUCACAAUGAAGAGAGUAACGAAAAGUUAUUGUAACUUUGCCGUGCUUUUGAGAGAUAUGACCAUAUAAUGUCCAAUCUAUUAGCAACAAGACGAUUAAAAAACAA ................(((((((...((((((.((..((((((..((((....))))...((.(((((((((((((((......(((((......((((((.....(((....))).....(((((((.....(((((((((((((((((.(((........))).))))))))))))))))).....)))))))...)))))).......)))))((((((((((...((.(((((((((.....................))))))))).))............)))))))))).....)))))).).)))))))).))..((((((........(((((.............)))))....((((((((((..(((......)))...((....((((((((((((((((....))))))).)).)))))))...)).)))))))))))))))))))))).....)).)))))).........(((((((.((.(((((((...)))))))..)))))))))...((((..(((........)))..))))...........)))))))......... (-177.80) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UUGUUUUUUAAUCGUCUUGUUGCUAAUAGAUUGGACAUUAUAUGGUCAUAUCUCUCAAAAGCACGGCAAAGUUACAAUAACUUUUCGUUACUCUCUUCAUUGUGAUCAACCUGCAGAUUCCCCCCACCGGUGCAACAUUAAGCAAGCGACCUCAGGAUUGACUCCCAAGAGUCAACCGAAAUCAGGAAACGACACUAUUUGAAAUUACAAUGUUGCAAUAUCGAUCUUGGCGUAAAACUGAUCGGAAACGGUCCGAUGUUUCUUCACAAUUACUGCUUUUUUUGACCUCCUCAAGCCUCAUUUUUUCAGUACACGUCACGUCAGUCGUCAGUAUAAAAAAGUGACGCGUGCCUUUCCUGAAAAGGCGCGCGAGAAUUUUCCCGUUUUGGCGCGAGAUGUUUUUCGUUCUGGCGCGGGAAUUAUUUAUUUCUCGCGCCAAAACAAAAAAGUUUACGCACCACGUUUUCAGGGGUGAUAAGCCGGAAAUUUUGGGCGCGUAAACUAAAAGCGAAUUAUGAUGAGAUAAGGGUACCCUUGUGGGGGACUCACGUUGAUGAUGACGAUUCGGCCGGCUAUAUGGG .............((((.(((.......))).)))).................((((..(((.((((.((((((...)))))).((((((.((...(((.(((((((........))...(((((((...(((((((((........((..((.((.(((((((....)))))))))))..)).(....)..................)))))))))...........((.(((...(.(((((....))))).).((((((.(((.((((...((((((.........(((..(((.((((((((..(((((((.(......).)))..)))).)))))))).(((((((((((.....)))))))))))................)))..))).........(((.(((((((((((........))))))))))).))).....(((((((((.(((...((((...(((.....))).))))...)))..))))))))))))))).)))).))).))))))....)))))..)))))))..))))).))).))))))))....)))))))...)))) (-173.30) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 618 239 191 131 84 NC_002950:PG1617|5end_hypothetical_protein_1697755..1697985_NEGATIVE 521 170 121 145 96 NC_002950:PG0132|5end_hypothetical_protein_152879..153109_POSITIVE 501 226 186 122 81 NC_002950:PG0174|5end_pyridine_nucleotide-disulphide_oxidoreductase_family_protein_197628..197858_NEGATIVE 499 153 112 163 122 NC_002950:PG0081|5end_hypothetical_protein_93805..94035_POSITIVE 480 203 163 88 46 NC_002950:PG0313|5end_hypothetical_protein_347366..347596_POSITIVE 468 154 112 49 7 NC_002950:PG1799|5end_hypothetical_protein_1894499..1894729_POSITIVE 460 190 144 107 61 NC_002950:PG1980|5end_hypothetical_protein_2067930..2068160_NEGATIVE 457 203 163 87 44 NC_002950:PG2064|5end_hypothetical_protein_2160550..2160780_POSITIVE 448 227 186 145 103 NC_002950:PG0007|5end_hypothetical_protein_6913..7143_NEGATIVE 435 340 292 91 42 NC_002950:PG1904|5end_hypothetical_protein_2004761..2004991_NEGATIVE 406 229 189 196 155 NC_002950:PG2063|5end_hypothetical_protein_2160596..2160826_NEGATIVE 399 154 113 226 186 NC_002950:PG0470|5end_hypothetical_protein_511883..512113_NEGATIVE 394 253 212 54 17 NC_002950:PG0472|5end_iron-sulfur_cluster_binding_protein,_putative_513339..513569_POSITIVE 393 488 445 205 166 NC_002950:PG1446|5end_MATE_efflux_family_protein_1531227..1531457_NEGATIVE 393 488 445 166 127 NC_002950:PG0827|5end_MATE_efflux_family_protein_884166..884396_POSITIVE 369 468 424 177 128 NC_002950:PG1939|5end_30S_ribosomal_protein_S10_2025081..2025311_NEGATIVE 365 129 85 215 175 NC_002950:PG0677|5end_saccharopine_dehydrogenase_727653..727883_POSITIVE 362 460 411 215 166 NC_002950:PG0053|5end_hypothetical_protein_65086..65316_NEGATIVE 360 256 211 140 96 NC_002950:PG0068|5end_hypothetical_protein_81748..81978_POSITIVE 359 228 185 85 41 NC_002950:PG0080|5end_hypothetical_protein_93832..94062_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 608 240 191 107 57 NC_002950:PG0732|3end_hypothetical_protein_783018..783168_POSITIVE 497 227 186 63 19 NC_002950:PG0542|3end_hypothetical_protein_595377..595527_NEGATIVE 445 300 255 48 1 NC_002950:PG0294|3end_glycosyl_transferase,_group_2_family_protein_329271..329421_NEGATIVE 394 253 212 67 30 NC_002950:PG0471|3end_hypothetical_protein_513432..513582_POSITIVE 393 488 445 69 30 NC_002950:PG1447|3end_transcriptional_regulator,_AraC_family_1531363..1531513_NEGATIVE 393 488 445 69 30 NC_002950:PG0826|3end_transcriptional_regulator,_AraC_family_884149..884299_POSITIVE 369 240 191 69 13 NC_002950:PG0143|3end_hydrolase,_carbon-nitrogen_family_165747..165897_NEGATIVE 354 189 141 49 1 NC_002950:PG1626|3end_hypothetical_protein_1710486..1710636_POSITIVE 354 480 431 114 51 NC_002950:PG1296|3end_hypothetical_protein_1375329..1375479_POSITIVE 352 479 431 78 26 NC_002950:PG1849|3end_DNA_repair_protein_RecN_1947379..1947529_NEGATIVE 351 438 391 144 88 NC_002950:PG0344|3end_purple_acid_phosphatase_378543..378693_NEGATIVE 349 437 394 48 4 NC_002950:PG1724|3end_O-sialoglycoprotein_endopeptidase_1814846..1814996_POSITIVE 348 462 424 132 90 NC_002950:PG1497|3end_DNA-binding_protein,_histone-like_family_1574635..1574785_POSITIVE 343 470 421 149 95 NC_002950:PG1665|3end_ABC_transporter,_permease_protein,_putative_1748452..1748602_POSITIVE 338 430 382 119 76 NC_002950:PG1633|3end_galactokinase_1714619..1714769_POSITIVE 337 469 424 148 93 NC_002950:PG2091|3end_dihydroneopterin_aldolase_2191610..2191760_POSITIVE 337 46 5 66 29 NC_002950:PG0997|3end_transcriptional_regulator,_putative_1057012..1057162_POSITIVE 336 470 425 123 68 NC_002950:PG1027|3end_hypothetical_protein_1089197..1089347_NEGATIVE 335 238 191 85 25 NC_002950:PG1007|3end_transcriptional_regulator,_GntR_family_1066518..1066668_NEGATIVE 334 478 431 138 79 NC_002950:PG0424|3end_hypothetical_protein_463213..463363_POSITIVE