Origin IGS: acaagaaaagggactctatccctcacgacaaaaagcaaggcacccgctcggagttcgacaggaacttcggcgggtgccttgcttttttatgctttcaagaaaagtttcttcggcgtcttttccccatcgaacggctgacgatctatatataaaacgttttcgatttatatacaaaatgaaaacgattaatatataaataaaaatcgatttatatattaatcgaaaatactttatatataaatcattcggacaacgccgaataaccggatttcagctccccttacgaaagccggaagagtgcttcgaagcctttgtataagaaatacggaagccgttttatatataaagcgtaaagcgcccttcgttgttgaaaacttttttctgcaaaacatttggacgatcagtttctttacccttatctttgcagtgcaaacagagagaagaggatggcgccgaatcgatctctcgattgctattattaaattaatggacagaaaaagtccgcattattaaatcattaattctttcaattatt .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 aataattgaaagaattaatgatttaataatgcggactttttctgtccattaatttaataatagcaatcgagagatcgattcggcgccatcctcttctctctgtttgcactgcaaagataagggtaaagaaactgatcgtccaaatgttttgcagaaaaaagttttcaacaacgaagggcgctttacgctttatatataaaacggcttccgtatttcttatacaaaggcttcgaagcactcttccggctttcgtaaggggagctgaaatccggttattcggcgttgtccgaatgatttatatataaagtattttcgattaatatataaatcgatttttatttatatattaatcgttttcattttgtatataaatcgaaaacgttttatatatagatcgtcagccgttcgatggggaaaagacgccgaagaaacttttcttgaaagcataaaaaagcaaggcacccgccgaagttcctgtcgaactccgagcgggtgccttgctttttgtcgtgagggatagagtcccttttcttgt Mask Tandem Repeat Region ================================================ acaagaaaagggactctatccctcacgacaaaaagcaaggcacccgctcggagttcgacaggaacttcggcgggtgccttgcttttttatgctttcaagaaaagtttcttcggcgtcttttccccatcgaacggctgacgatctatatataaaacgtttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncattcggacaacgccgaataaccggatttcagctccccttacgaaagccggaagagtgcttcgaagcctttgtataagaaatacggaagccgttttatatataaagcgtaaagcgcccttcgttgttgaaaacttttttctgcaaaacatttggacgatcagtttctttacccttatctttgcagtgcaaacagagagaagaggatggcgccgaatcgatctctcgattgctattattaaattaatggacagaaaaagtccgcattattaaatcattaattctttcaattatt Find is-nt database================================================ Query_seq: PG1274:PG1276|PG1274:PG1276:elongation factor P:DNA-binding protein, histone-like family:->->:1352550..1353084 535 acaagaaaagggactctatccctcacgacaaaaagcaaggcacccgctcggagttcgacaggaacttcggcgggtgccttgcttttttatgctttcaagaaaagtttcttcggcgtcttttccccatcgaacggctgacgatctatatataaaacgttttcgatttatatacaaaatgaaaacgattaatatataaataaaaatcgatttatatattaatcgaaaatactttatatataaatcattcggacaacgccgaataaccggatttcagctccccttacgaaagccggaagagtgcttcgaagcctttgtataagaaatacggaagccgttttatatataaagcgtaaagcgcccttcgttgttgaaaacttttttctgcaaaacatttggacgatcagtttctttacccttatctttgcagtgcaaacagagagaagaggatggcgccgaatcgatctctcgattgctattattaaattaatggacagaaaaagtccgcattattaaatcattaattctttcaattatt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PG1274:PG1276|PG1274:PG1276:elongation factor P:DNA-binding protein, histone-like family:->->:1352550..1353084 535 acaagaaaagggactctatccctcacgacaaaaagcaaggcacccgctcggagttcgacaggaacttcggcgggtgccttgcttttttatgctttcaagaaaagtttcttcggcgtcttttccccatcgaacggctgacgatctatatataaaacgttttcgatttatatacaaaatgaaaacgattaatatataaataaaaatcgatttatatattaatcgaaaatactttatatataaatcattcggacaacgccgaataaccggatttcagctccccttacgaaagccggaagagtgcttcgaagcctttgtataagaaatacggaagccgttttatatataaagcgtaaagcgcccttcgttgttgaaaacttttttctgcaaaacatttggacgatcagtttctttacccttatctttgcagtgcaaacagagagaagaggatggcgccgaatcgatctctcgattgctattattaaattaatggacagaaaaagtccgcattattaaatcattaattctttcaattatt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PG1274:PG1276|PG1274:PG1276:elongation factor P:DNA-binding protein, histone-like family:->->:1352550..1353084 535 acaagaaaagggactctatccctcacgacaaaaagcaaggcacccgctcggagttcgacaggaacttcggcgggtgccttgcttttttatgctttcaagaaaagtttcttcggcgtcttttccccatcgaacggctgacgatctatatataaaacgttttcgatttatatacaaaatgaaaacgattaatatataaataaaaatcgatttatatattaatcgaaaatactttatatataaatcattcggacaacgccgaataaccggatttcagctccccttacgaaagccggaagagtgcttcgaagcctttgtataagaaatacggaagccgttttatatataaagcgtaaagcgcccttcgttgttgaaaacttttttctgcaaaacatttggacgatcagtttctttacccttatctttgcagtgcaaacagagagaagaggatggcgccgaatcgatctctcgattgctattattaaattaatggacagaaaaagtccgcattattaaatcattaattctttcaattatt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 acaagaaaagggactctatccctcacgacaaaaagcaaggcacccgctcggagttcgacaggaacttcggcgggtgccttgcttttttatgctttcaagaaaagtttcttcggcgtcttttccccatcgaacggctgacgatctatatataaaacgttttcgatttatatacaaaatgaaaacgattaatatataaataaaaatcgatttatatattaatcgaaaatactttatatataaatcattcggacaacgccgaataaccggatttcagctccccttacgaaagccggaagagtgcttcgaagcctttgtataagaaatacggaagccgttttatatataaagcgtaaagcgcccttcgttgttgaaaacttttttctgcaaaacatttggacgatcagtttctttacccttatctttgcagtgcaaacagagagaagaggatggcgccgaatcgatctctcgattgctattattaaattaatggacagaaaaagtccgcattattaaatcattaattctttcaattatt Predict ORF larger than 30AA ================================================ Protein_Len: 44 Strand: + Start: 18 End: 149 ................. M P H D K K Q G T R S E F D R N F G G C L A F L C F Q E K F L R R L F P I E R L T I Y I .................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 40 Strand: + Start: 74 End: 193 ......................................................................... M P C F F M L S R K V S S A S F P H R T A D D L Y I K R F R F I Y K M K T I N I ...................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 40 Strand: + Start: 197 End: 316 .................................................................................................................................................................................................... M K I D L Y I N R K Y F I Y K S F G Q R R I T G F Q L P L R K P E E C F E A F V ........................................................................................................................................................................................................................... Protein_Len: 40 Strand: + Start: 365 End: 484 ............................................................................................................................................................................................................................................................................................................................................................................ M L K T F F C K T F G R S V S L P L S L Q C K Q R E E D G A E S I S R L L L L N ................................................... Protein_Len: 60 Strand: + Start: 241 End: 510 ................................................................................................................................................................................................................................................ M I R T T P N N R I S A P L T K A G R V L R S L C I R N T E A V L Y I K R K A P F V V E N F F L Q N I W T I S F F T L I ......................... Protein_Len: 41 Strand: - Start: 340 End: 462 ................................................................................................................................................................................................................................................................................................................................................... I Y L T F R G E N N F V K K Q L V N P R D T E K G K D K C H L C L S S S P A S D M ......................................................................... Protein_Len: 60 Strand: - Start: 234 End: 494 ......................................................................................................................................................................................................................................... I L F V S A T K Y I F R L A G K T T S F K K R C F M Q V I L K K V R I K A T C V S L L P H R R I S R E I A I I L N I S M ......................................... Protein_Len: 60 Strand: - Start: 19 End: 261 .................. K K I S E L F T E E A D K G W R V A S S R Y I F R K R N I Y L I F V I L I Y I F I S K Y I L R F Y K I Y L D N P C R R M .................................................................................................................................................................................................................................................................................. acaagaaaagggactctatccctcacgacaaaaagcaaggcacccgctcggagttcgacaggaacttcggcgggtgccttgcttttttatgctttcaagaaaagtttcttcggcgtcttttccccatcgaacggctgacgatctatatataaaacgttttcgatttatatacaaaatgaaaacgattaatatataaataaaaatcgatttatatattaatcgaaaatactttatatataaatcattcggacaacgccgaataaccggatttcagctccccttacgaaagccggaagagtgcttcgaagcctttgtataagaaatacggaagccgttttatatataaagcgtaaagcgcccttcgttgttgaaaacttttttctgcaaaacatttggacgatcagtttctttacccttatctttgcagtgcaaacagagagaagaggatggcgccgaatcgatctctcgattgctattattaaattaatggacagaaaaagtccgcattattaaatcattaattctttcaattatt Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: - Score: 84 Start: 213 End: 242 ....................................................................................................................................................................................................................ATTTATATATAAAGTATTTTCGATTAATAT..................................................................................................................................................................................................................................................................................................... Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ acaagaaaagggactctatccctcacgacaaaaagcaaggcacccgctcggagttcgacaggaacttcggcgggtgccttgcttttttatgctttcaagaaaagtttcttcggcgtcttttccccatcgaacggctgacgatctatatataaaacgttttcgatttatatacaaaatgaaaacgattaatatataaataaaaatcgatttatatattaatcgaaaatactttatatataaatcattcggacaacgccgaataaccggatttcagctccccttacgaaagccggaagagtgcttcgaagcctttgtataagaaatacggaagccgttttatatataaagcgtaaagcgcccttcgttgttgaaaacttttttctgcaaaacatttggacgatcagtttctttacccttatctttgcagtgcaaacagagagaagaggatggcgccgaatcgatctctcgattgctattattaaattaatggacagaaaaagtccgcattattaaatcattaattctttcaattatt Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 100 HP_score: -27.3 Tail_Score: -5.42265 Start: 35 End: 82 Full_Region: CCCTCACGACAAAAA GCAAGGCACCCGCTCGGAGTTC GACAG GAACTTCGGCGGGTGCCTTGC TTTTTTATGCTTTCA ..................................GCAAGGCACCCGCTCGGAGTTCGACAGGAACTTCGGCGGGTGCCTTGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 100 HP_score: -25.1 Tail_Score: -4.91109 Start: 35 End: 82 Full_Region: tgaaagcataaaaaa gcaaggcacccgccgaagttc ctgtc gaactccgagcgggtgccttgc tttttgtcgtgaggg ..................................gcaaggcacccgccgaagttcctgtcgaactccgagcgggtgccttgc..................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 91 HP_score: -11.2 Tail_Score: -4.75518 Start: 183 End: 222 Full_Region: tatataaagtatttt cgattaatatataaat cgattttt atttatatattaatcg ttttcattttgtata ......................................................................................................................................................................................cgattaatatataaatcgatttttatttatatattaatcg......................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 43 HP_score: -2.1 Tail_Score: -3.1505 Start: 190 End: 215 Full_Region: AATGAAAACGATTAA TATATAAAT AAAAATCG ATTTATATA TTAATCGAAAATACT .............................................................................................................................................................................................TATATAAATAAAAATCGATTTATATA................................................................................................................................................................................................................................................................................................................................ TransTerm Strand: - Conf: 79 HP_score: -3.6 Tail_Score: -5.4433 Start: 204 End: 223 Full_Region: atatataaagtattt tcgattaa tata taaatcga tttttatttatatat ...........................................................................................................................................................................................................tcgattaatatataaatcga........................................................................................................................................................................................................................................................................................................................ Find igs database================================================ Query_seq: PG1274:PG1276|PG1274:PG1276:elongation factor P:DNA-binding protein, histone-like family:->->:1352550..1353084 535 acaagaaaagggactctatccctcacgacaaaaagcaaggcacccgctcggagttcgacaggaacttcggcgggtgccttgcttttttatgctttcaagaaaagtttcttcggcgtcttttccccatcgaacggctgacgatctatatataaaacgttttcgatttatatacaaaatgaaaacgattaatatataaataaaaatcgatttatatattaatcgaaaatactttatatataaatcattcggacaacgccgaataaccggatttcagctccccttacgaaagccggaagagtgcttcgaagcctttgtataagaaatacggaagccgttttatatataaagcgtaaagcgcccttcgttgttgaaaacttttttctgcaaaacatttggacgatcagtttctttacccttatctttgcagtgcaaacagagagaagaggatggcgccgaatcgatctctcgattgctattattaaattaatggacagaaaaagtccgcattattaaatcattaattctttcaattatt Intra-Species Hit: Count: 2 Min: 1 Max: 535 Len: 535 Subject: NC_002950_PG1274_PG1276|elongation factor P:DNA-binding protein, histone-like family|POSITIVE:POSITIVE|[1352550,1353084]|535 HSP 1 e-value: 1.0E-164 bit: 581.0 Len: 293 Query Start:243 Query End:535 Subject Strand: POSITIVE Subject Start: 243 Subject End: 535 ..................................................................................................................................................................................................................................................cattcggacaacgccgaataaccggatttcagctccccttacgaaagccggaagagtgcttcgaagcctttgtataagaaatacggaagccgttttatatataaagcgtaaagcgcccttcgttgttgaaaacttttttctgcaaaacatttggacgatcagtttctttacccttatctttgcagtgcaaacagagagaagaggatggcgccgaatcgatctctcgattgctattattaaattaatggacagaaaaagtccgcattattaaatcattaattctttcaattatt ..................................................................................................................................................................................................................................................cattcggacaacgccgaataaccggatttcagctccccttacgaaagccggaagagtgcttcgaagcctttgtataagaaatacggaagccgttttatatataaagcgtaaagcgcccttcgttgttgaaaacttttttctgcaaaacatttggacgatcagtttctttacccttatctttgcagtgcaaacagagagaagaggatggcgccgaatcgatctctcgattgctattattaaattaatggacagaaaaagtccgcattattaaatcattaattctttcaattatt HSP 2 e-value: 3.0E-75 bit: 283.0 Len: 143 Query Start:1 Query End:143 Subject Strand: POSITIVE Subject Start: 1 Subject End: 143 acaagaaaagggactctatccctcacgacaaaaagcaaggcacccgctcggagttcgacaggaacttcggcgggtgccttgcttttttatgctttcaagaaaagtttcttcggcgtcttttccccatcgaacggctgacgatc........................................................................................................................................................................................................................................................................................................................................................................................................ acaagaaaagggactctatccctcacgacaaaaagcaaggcacccgctcggagttcgacaggaacttcggcgggtgccttgcttttttatgctttcaagaaaagtttcttcggcgtcttttccccatcgaacggctgacgatc........................................................................................................................................................................................................................................................................................................................................................................................................ Subject: NC_002950_PG0566_PG0568|DNA-binding protein, histone-like family:elongation factor P|NEGATIVE:NEGATIVE|[623532,624088]|557 HSP 1 e-value: 1.0E-162 bit: 573.0 Len: 293 Query Start:243 Query End:535 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 293 ..................................................................................................................................................................................................................................................cattcggacaacgccgaataaccggatttcagctccccttacgaaagccggaagagtgcttcgaagcctttgtataagaaatacggaagccgttttatatataaagcgtaaagcgcccttcgttgttgaaaacttttttctgcaaaacatttggacgatcagtttctttacccttatctttgcagtgcaaacagagagaagaggatggcgccgaatcgatctctcgattgctattattaaattaatggacagaaaaagtccgcattattaaatcattaattctttcaattatt ..................................................................................................................................................................................................................................................cattcggacaactccgaataaccggatttcagctccccttacgaaagccggaagagtgcttcgaagcctttgtataagaaatacggaagccgttttatatataaagcgtaaagcgcccttcgttgttgaaaacttttttctgcaaaacatttggacgatcagtttctttacccttatctttgcagtgcaaacagagagaagaggatggcgccgaatcgatctctcgattgctattattaaattaatggacagaaaaagtccgcattattaaatcattaattctttcaattatt HSP 2 e-value: 3.0E-47 bit: 190.0 Len: 143 Query Start:1 Query End:143 Subject Strand: NEGATIVE Subject Start: 415 Subject End: 557 acaagaaaagggactctatccctcacgacaaaaagcaaggcacccgctcggagttcgacaggaacttcg-gcgggtgccttgcttttttatgctttcaagaaaagtttcttcggcgtcttttccccatcgaacggctgacgatc........................................................................................................................................................................................................................................................................................................................................................................................................ acaagaaaagggactctatccctcacgacaaaaagcaagacacccgc-cgaagttcctgtcgaactccgagcgggtgccttgcttttttatgctttcaagaaaagtttcttcggcgtcttttccccatcgaacggctgacgatc........................................................................................................................................................................................................................................................................................................................................................................................................ HSP 3 e-value: 4.0E-22 bit: 107.0 Len: 58 Query Start:30 Query End:87 Subject Strand: POSITIVE Subject Start: 471 Subject End: 528 .............................aaaaagcaaggcacccgctcggagttcgacaggaacttcggcgggtgccttgcttttt................................................................................................................................................................................................................................................................................................................................................................................................................................................................ .............................aaaaagcaaggcacccgctcggagttcgacaggaacttcggcgggtgtcttgcttttt................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ ACAAGAAAAGGGACUCUAUCCCUCACGACAAAAAGCAAGGCACCCGCUCGGAGUUCGACAGGAACUUCGGCGGGUGCCUUGCUUUUUUAUGCUUUCAAGAAAAGUUUCUUCGGCGUCUUUUCCCCAUCGAACGGCUGACGAUCUAUAUAUAAAACGUUUUCGAUUUAUAUACAAAAUGAAAACGAUUAAUAUAUAAAUAAAAAUCGAUUUAUAUAUUAAUCGAAAAUACUUUAUAUAUAAAUCAUUCGGACAACGCCGAAUAACCGGAUUUCAGCUCCCCUUACGAAAGCCGGAAGAGUGCUUCGAAGCCUUUGUAUAAGAAAUACGGAAGCCGUUUUAUAUAUAAAGCGUAAAGCGCCCUUCGUUGUUGAAAACUUUUUUCUGCAAAACAUUUGGACGAUCAGUUUCUUUACCCUUAUCUUUGCAGUGCAAACAGAGAGAAGAGGAUGGCGCCGAAUCGAUCUCUCGAUUGCUAUUAUUAAAUUAAUGGACAGAAAAAGUCCGCAUUAUUAAAUCAUUAAUUCUUUCAAUUAUU ..(((((.(((((.....)))))...((.((((((((((((((((((.((((((((.....))))))))))))))))))))))))))...((..((.(((...(((..(((((((((...(((.((.((((.(((..(((...(((((((((((((((((((((((.((((((((.......((((((((((((((((........))))))))))))))))....((((((...........((((((......))))))..((((.((((............)))).)))).))))))..........))))))))..)))).)))))).)))))))))))))...))).....))).)))).)).......((((((((((.......((((.((...(((.................)))..)).)))))))))))))).))).)))))))))..))).))).))..))...............((((.......))))...........)).....)))))......... (-167.14) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AAUAAUUGAAAGAAUUAAUGAUUUAAUAAUGCGGACUUUUUCUGUCCAUUAAUUUAAUAAUAGCAAUCGAGAGAUCGAUUCGGCGCCAUCCUCUUCUCUCUGUUUGCACUGCAAAGAUAAGGGUAAAGAAACUGAUCGUCCAAAUGUUUUGCAGAAAAAAGUUUUCAACAACGAAGGGCGCUUUACGCUUUAUAUAUAAAACGGCUUCCGUAUUUCUUAUACAAAGGCUUCGAAGCACUCUUCCGGCUUUCGUAAGGGGAGCUGAAAUCCGGUUAUUCGGCGUUGUCCGAAUGAUUUAUAUAUAAAGUAUUUUCGAUUAAUAUAUAAAUCGAUUUUUAUUUAUAUAUUAAUCGUUUUCAUUUUGUAUAUAAAUCGAAAACGUUUUAUAUAUAGAUCGUCAGCCGUUCGAUGGGGAAAAGACGCCGAAGAAACUUUUCUUGAAAGCAUAAAAAAGCAAGGCACCCGCCGAAGUUCCUGUCGAACUCCGAGCGGGUGCCUUGCUUUUUGUCGUGAGGGAUAGAGUCCCUUUUCUUGU .......(((((.(((((....))))).....(((((((.(((.(((...............((..((((((((....(((((((.......................((((((((.....((....((......))..)).....)))))))).......(((((..((.((((.(((.....(((.(((((((((((((((....(((.(((((..........(((....)))........((((..(.....)..))))))))).)))..((((((......))))))((((((((((((((((.....((((((((((((((((........)))))))))))))))).....)))))))))))))))).....))))))))))))))).)))..))).)))).))..)))))..)))))))......))))))))..))...((((((((((((((((((((.(((((.....))))).)).))))))))))))))))))...).)).))).))))))).))))).... (-181.50) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 583 79 35 78 34 NC_002950:PG1223|5end_hypothetical_protein_1299461..1299691_POSITIVE 557 80 40 42 1 NC_002950:PG0371|5end_hypothetical_protein_404043..404273_POSITIVE 498 90 41 147 102 NC_002950:PG1695|5end_hypothetical_protein_1779440..1779670_POSITIVE 465 80 33 212 157 NC_002950:PG1713|5end_lipoprotein,_putative_1801811..1802041_NEGATIVE 444 179 138 140 99 NC_002950:PG1222|5end_hypothetical_protein_1299392..1299622_NEGATIVE 402 80 34 72 9 NC_002950:PG0485|5end_preprotein_translocase,_YajC_subunit_525324..525554_NEGATIVE 399 86 48 38 2 NC_002950:PG1574|5end_hypothetical_protein_1652613..1652843_NEGATIVE 389 79 39 46 2 NC_002950:PG0128|5end_hypothetical_protein_149594..149824_POSITIVE 382 77 34 193 137 NC_002950:PG2029|5end_hypothetical_protein_2126543..2126773_POSITIVE 381 468 421 124 81 NC_002950:PG1021|5end_hypothetical_protein_1083592..1083822_NEGATIVE 373 70 25 194 151 NC_002950:PG1015|5end_hypothetical_protein_1076020..1076250_NEGATIVE 373 97 51 90 40 NC_002950:PG0918|5end_hypothetical_protein_978818..979048_NEGATIVE 372 82 45 229 189 NC_002950:PG0685|5end_ABC_transporter,_ATP-binding_protein_740116..740346_POSITIVE 370 86 43 184 136 NC_002950:PG2199|5end_ABC_transporter,_ATP-binding_protein,_putative_2306723..2306953_NEGATIVE 368 316 273 74 28 NC_002950:PG2043|5end_conserved_hypothetical_protein_TIGR00486_2142218..2142448_POSITIVE 366 310 265 59 5 NC_002950:PG0357|5end_aspartate_carbamoyltransferase_catalytic_subunit_391440..391670_POSITIVE 360 76 33 225 179 NC_002950:PG0593|5end_htrA_protein_650362..650592_POSITIVE 360 78 31 177 125 NC_002950:PG0327|5end_hypothetical_protein_362061..362291_NEGATIVE 359 78 31 169 118 NC_002950:PG1947|5end_TPR_domain_protein_2032932..2033162_POSITIVE 359 78 36 185 143 NC_002950:PG0308|5end_electron_transport_complex,_RnfABCDGE_type,_A_subunit_343175..343405_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 1024 80 31 54 5 NC_002950:PG0568|3end_elongation_factor_P_623999..624149_NEGATIVE 782 80 31 54 5 NC_002950:PG1274|3end_elongation_factor_P_1352489..1352639_POSITIVE 557 80 40 143 102 NC_002950:PG0371|3end_hypothetical_protein_404224..404374_POSITIVE 445 81 41 37 1 NC_002950:PG1889|3end_hypothetical_protein_1987090..1987240_POSITIVE 384 57 11 151 97 NC_002950:PG0492|3end_hypothetical_protein_534408..534558_NEGATIVE 372 82 45 136 96 NC_002950:PG0684|3end_ABC_transporter,_permease_protein,_putative_740103..740253_POSITIVE 371 87 47 116 80 NC_002950:PG0756|3end_hypothetical_protein_804321..804471_NEGATIVE 362 310 265 120 61 NC_002950:PG0143|3end_hydrolase,_carbon-nitrogen_family_165747..165897_NEGATIVE 361 298 255 68 10 NC_002950:PG1950|3end_hypothetical_protein_2040840..2040990_POSITIVE 360 78 31 83 31 NC_002950:PG0328|3end_imidazolonepropionase_362155..362305_NEGATIVE 358 468 422 127 75 NC_002950:PG0155|3end_riboflavin_biosynthesis_protein_RibD_177861..178011_NEGATIVE 356 75 41 59 24 NC_002950:PG1853|3end_DNA_polymerase_III,_beta_subunit_1951986..1952136_NEGATIVE 353 84 44 141 94 NC_002950:PG1653|3end_hypothetical_protein_1736458..1736608_POSITIVE 352 86 45 58 6 NC_002950:PG1473|3end_conjugative_transposon_protein_TraQ_1549761..1549911_NEGATIVE 352 90 44 134 75 NC_002950:PG0799|3end_hypothetical_protein_854599..854749_POSITIVE 349 302 264 49 9 NC_002950:PG0958|3end_ribonuclease_BN,_putative_1018135..1018285_NEGATIVE 347 141 103 138 87 NC_002950:PG0165|3end_heat_shock_protein_15_187370..187520_NEGATIVE 345 80 33 108 61 NC_002950:PG2037|3end_hypothetical_protein_2137591..2137741_NEGATIVE 344 310 265 71 13 NC_002950:PG2062|3end_histidyl-tRNA_synthetase_2160415..2160565_POSITIVE 344 70 24 101 49 NC_002950:PG1389|3end_DNA-binding_protein,_histone-like_family_1470870..1471020_NEGATIVE