Origin IGS: tgtcatttagccgtttaatacaaaacaccgtcgttcgatagaatctcgctgacatactgcgatttggctttaacaggagatctctattgctctgcaaatgtaacgaaaagaccgaccggacagaaactcttgaagaaagcgacaggcttcggaagccgctttatcggaaagtcgttatcttcgttcgtcaaagagatacctgtgtatctcgtcaatacggtatttatcatcgttatgcccatatcgaaaaaatcttttggcagatggcttttatgtatggtcggtcttgccgcttccatccttgtaggagccttgtctcagagttgccgaggctgtgtgtccgaagaggggagagccgacagcatcccatgcgactcctctgtcgtatcggggctgcgctctgcggacacgctacgcgtggctacactctcatcatcgaccacctacttcgtgtacaaagacgaagaaatgggctatgagtacgagctggccaagctgctcgccgactctctgggcttgactctggtcgtagaagtggtgcccaacgacgaggcactttatgctgcggtcgataccggtctggtcgatatggcaattacacctcaggccgcaaccttcaagggtaagcagaagtatctcttcgttggtcccgaagaaatatcgggacaagtattggtgcaacgcagcgacggcaatccacgtataacgaacgtaacagatcttatcggcaagcccgttacagtcatggcacatactcgctatgccgatcggctccggcacctgaacgaagaagtggggggaggtatcgattcgctgatcctcagcggagataccctcacgaccgaagacctgatcacgcaggtagccaaaggagaaatagactacacctttgccgatgaacagttggcacgactggcacgaacctactaccgcaatatagacatcagtttgaaagtaggcttcggacaaaggctgcaatggatcgtccgcaaggacaatcattgtctggcgcggtgggtgaaccgatggggggaatccatccccgacaaggaatcgtaccgagccatacagaagcgatacttcgagatgagcaagagcgacgatgaggtcgaagaggagcagtccgctccccgacctcgcatcaagctgaggaaagggagtatatcgcagtacgataccattttcaagcactatgcagaggagtttcggctcggctggtcttggcatctgctcgcatccatcgcctaccacgaatcgcgcttcaatgccggtatcgtaggctggtccggtgccagaggtttgatgggtatcatgccgaggacaggccgacgcttcggagccgacaagcaggaacttctggatccggaagtttcggtacgcgtctccatccgatgcctgttggcgttcaagaacgaatttcccgatgtaacggatccggaagaaaagctcaagtttacgctcgctgcctacaatgccggctcgggtcacgtggcggacgcaaggcgtttggctgcgaagtacgggggcaaccccaacgtatgggacaataacgtggaggcatacatccgcctcaagaaagaccctaactactataacgatcctgtctgtcgctccggctatctgcgaggtgcggagacgatcaactatgtacgcagcgtaatggctcgttatcaggcatacaaacagaaggattgataccactactgcatctaaagacagc .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 gctgtctttagatgcagtagtggtatcaatccttctgtttgtatgcctgataacgagccattacgctgcgtacatagttgatcgtctccgcacctcgcagatagccggagcgacagacaggatcgttatagtagttagggtctttcttgaggcggatgtatgcctccacgttattgtcccatacgttggggttgcccccgtacttcgcagccaaacgccttgcgtccgccacgtgacccgagccggcattgtaggcagcgagcgtaaacttgagcttttcttccggatccgttacatcgggaaattcgttcttgaacgccaacaggcatcggatggagacgcgtaccgaaacttccggatccagaagttcctgcttgtcggctccgaagcgtcggcctgtcctcggcatgatacccatcaaacctctggcaccggaccagcctacgataccggcattgaagcgcgattcgtggtaggcgatggatgcgagcagatgccaagaccagccgagccgaaactcctctgcatagtgcttgaaaatggtatcgtactgcgatatactccctttcctcagcttgatgcgaggtcggggagcggactgctcctcttcgacctcatcgtcgctcttgctcatctcgaagtatcgcttctgtatggctcggtacgattccttgtcggggatggattccccccatcggttcacccaccgcgccagacaatgattgtccttgcggacgatccattgcagcctttgtccgaagcctactttcaaactgatgtctatattgcggtagtaggttcgtgccagtcgtgccaactgttcatcggcaaaggtgtagtctatttctcctttggctacctgcgtgatcaggtcttcggtcgtgagggtatctccgctgaggatcagcgaatcgatacctccccccacttcttcgttcaggtgccggagccgatcggcatagcgagtatgtgccatgactgtaacgggcttgccgataagatctgttacgttcgttatacgtggattgccgtcgctgcgttgcaccaatacttgtcccgatatttcttcgggaccaacgaagagatacttctgcttacccttgaaggttgcggcctgaggtgtaattgccatatcgaccagaccggtatcgaccgcagcataaagtgcctcgtcgttgggcaccacttctacgaccagagtcaagcccagagagtcggcgagcagcttggccagctcgtactcatagcccatttcttcgtctttgtacacgaagtaggtggtcgatgatgagagtgtagccacgcgtagcgtgtccgcagagcgcagccccgatacgacagaggagtcgcatgggatgctgtcggctctcccctcttcggacacacagcctcggcaactctgagacaaggctcctacaaggatggaagcggcaagaccgaccatacataaaagccatctgccaaaagattttttcgatatgggcataacgatgataaataccgtattgacgagatacacaggtatctctttgacgaacgaagataacgactttccgataaagcggcttccgaagcctgtcgctttcttcaagagtttctgtccggtcggtcttttcgttacatttgcagagcaatagagatctcctgttaaagccaaatcgcagtatgtcagcgagattctatcgaacgacggtgttttgtattaaacggctaaatgaca Mask Tandem Repeat Region ================================================ tgtcatttagccgtttaatacaaaacaccgtcgttcgatagaatctcgctgacatactgcgatttggctttaacaggagatctctattgctctgcaaatgtaacgaaaagaccgaccggacagaaactcttgaagaaagcgacaggcttcggaagccgctttatcggaaagtcgttatcttcgttcgtcaaagagatacctgtgtatctcgtcaatacggtatttatcatcgttatgcccatatcgaaaaaatcttttggcagatggcttttatgtatggtcggtcttgccgcttccatccttgtaggagccttgtctcagagttgccgaggctgtgtgtccgaagaggggagagccgacagcatcccatgcgactcctctgtcgtatcggggctgcgctctgcggacacgctacgcgtggctacactctcatcatcgaccacctacttcgtgtacaaagacgaagaaatgggctatgagtacgagctggccaagctgctcgccgactctctgggcttgactctggtcgtagaagtggtgcccaacgacgaggcactttatgctgcggtcgataccggtctggtcgatatggcaattacacctcaggccgcaaccttcaagggtaagcagaagtatctcttcgttggtcccgaagaaatatcgggacaagtattggtgcaacgcagcgacggcaatccacgtataacgaacgtaacagatcttatcggcaagcccgttacagtcatggcacatactcgctatgccgatcggctccggcacctgaacgaagaagtggggggaggtatcgattcgctgatcctcagcggagataccctcacgaccgaagacctgatcacgcaggtagccaaaggagaaatagactacacctttgccgatgaacagttggcacgactggcacgaacctactaccgcaatatagacatcagtttgaaagtaggcttcggacaaaggctgcaatggatcgtccgcaaggacaatcattgtctggcgcggtgggtgaaccgatggggggaatccatccccgacaaggaatcgtaccgagccatacagaagcgatacttcgagatgagcaagagcgacgatgaggtcgaagaggagcagtccgctccccgacctcgcatcaagctgaggaaagggagtatatcgcagtacgataccattttcaagcactatgcagaggagtttcggctcggctggtcttggcatctgctcgcatccatcgcctaccacgaatcgcgcttcaatgccggtatcgtaggctggtccggtgccagaggtttgatgggtatcatgccgaggacaggccgacgcttcggagccgacaagcaggaacttctggatccggaagtttcggtacgcgtctccatccgatgcctgttggcgttcaagaacgaatttcccgatgtaacggatccggaagaaaagctcaagtttacgctcgctgcctacaatgccggctcgggtcacgtggcggacgcaaggcgtttggctgcgaagtacgggggcaaccccaacgtatgggacaataacgtggaggcatacatccgcctcaagaaagaccctaactactataacgatcctgtctgtcgctccggctatctgcgaggtgcggagacgatcaactatgtacgcagcgtaatggctcgttatcaggcatacaaacagaaggattgataccactactgcatctaaagacagc Find is-nt database================================================ Query_seq: PG1223:PG1225|PG1223:PG1225:hypothetical protein:ABC transporter, ATP-binding protein:->->:1299805..1301524 1720 tgtcatttagccgtttaatacaaaacaccgtcgttcgatagaatctcgctgacatactgcgatttggctttaacaggagatctctattgctctgcaaatgtaacgaaaagaccgaccggacagaaactcttgaagaaagcgacaggcttcggaagccgctttatcggaaagtcgttatcttcgttcgtcaaagagatacctgtgtatctcgtcaatacggtatttatcatcgttatgcccatatcgaaaaaatcttttggcagatggcttttatgtatggtcggtcttgccgcttccatccttgtaggagccttgtctcagagttgccgaggctgtgtgtccgaagaggggagagccgacagcatcccatgcgactcctctgtcgtatcggggctgcgctctgcggacacgctacgcgtggctacactctcatcatcgaccacctacttcgtgtacaaagacgaagaaatgggctatgagtacgagctggccaagctgctcgccgactctctgggcttgactctggtcgtagaagtggtgcccaacgacgaggcactttatgctgcggtcgataccggtctggtcgatatggcaattacacctcaggccgcaaccttcaagggtaagcagaagtatctcttcgttggtcccgaagaaatatcgggacaagtattggtgcaacgcagcgacggcaatccacgtataacgaacgtaacagatcttatcggcaagcccgttacagtcatggcacatactcgctatgccgatcggctccggcacctgaacgaagaagtggggggaggtatcgattcgctgatcctcagcggagataccctcacgaccgaagacctgatcacgcaggtagccaaaggagaaatagactacacctttgccgatgaacagttggcacgactggcacgaacctactaccgcaatatagacatcagtttgaaagtaggcttcggacaaaggctgcaatggatcgtccgcaaggacaatcattgtctggcgcggtgggtgaaccgatggggggaatccatccccgacaaggaatcgtaccgagccatacagaagcgatacttcgagatgagcaagagcgacgatgaggtcgaagaggagcagtccgctccccgacctcgcatcaagctgaggaaagggagtatatcgcagtacgataccattttcaagcactatgcagaggagtttcggctcggctggtcttggcatctgctcgcatccatcgcctaccacgaatcgcgcttcaatgccggtatcgtaggctggtccggtgccagaggtttgatgggtatcatgccgaggacaggccgacgcttcggagccgacaagcaggaacttctggatccggaagtttcggtacgcgtctccatccgatgcctgttggcgttcaagaacgaatttcccgatgtaacggatccggaagaaaagctcaagtttacgctcgctgcctacaatgccggctcgggtcacgtggcggacgcaaggcgtttggctgcgaagtacgggggcaaccccaacgtatgggacaataacgtggaggcatacatccgcctcaagaaagaccctaactactataacgatcctgtctgtcgctccggctatctgcgaggtgcggagacgatcaactatgtacgcagcgtaatggctcgttatcaggcatacaaacagaaggattgataccactactgcatctaaagacagc Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PG1223:PG1225|PG1223:PG1225:hypothetical protein:ABC transporter, ATP-binding protein:->->:1299805..1301524 1720 tgtcatttagccgtttaatacaaaacaccgtcgttcgatagaatctcgctgacatactgcgatttggctttaacaggagatctctattgctctgcaaatgtaacgaaaagaccgaccggacagaaactcttgaagaaagcgacaggcttcggaagccgctttatcggaaagtcgttatcttcgttcgtcaaagagatacctgtgtatctcgtcaatacggtatttatcatcgttatgcccatatcgaaaaaatcttttggcagatggcttttatgtatggtcggtcttgccgcttccatccttgtaggagccttgtctcagagttgccgaggctgtgtgtccgaagaggggagagccgacagcatcccatgcgactcctctgtcgtatcggggctgcgctctgcggacacgctacgcgtggctacactctcatcatcgaccacctacttcgtgtacaaagacgaagaaatgggctatgagtacgagctggccaagctgctcgccgactctctgggcttgactctggtcgtagaagtggtgcccaacgacgaggcactttatgctgcggtcgataccggtctggtcgatatggcaattacacctcaggccgcaaccttcaagggtaagcagaagtatctcttcgttggtcccgaagaaatatcgggacaagtattggtgcaacgcagcgacggcaatccacgtataacgaacgtaacagatcttatcggcaagcccgttacagtcatggcacatactcgctatgccgatcggctccggcacctgaacgaagaagtggggggaggtatcgattcgctgatcctcagcggagataccctcacgaccgaagacctgatcacgcaggtagccaaaggagaaatagactacacctttgccgatgaacagttggcacgactggcacgaacctactaccgcaatatagacatcagtttgaaagtaggcttcggacaaaggctgcaatggatcgtccgcaaggacaatcattgtctggcgcggtgggtgaaccgatggggggaatccatccccgacaaggaatcgtaccgagccatacagaagcgatacttcgagatgagcaagagcgacgatgaggtcgaagaggagcagtccgctccccgacctcgcatcaagctgaggaaagggagtatatcgcagtacgataccattttcaagcactatgcagaggagtttcggctcggctggtcttggcatctgctcgcatccatcgcctaccacgaatcgcgcttcaatgccggtatcgtaggctggtccggtgccagaggtttgatgggtatcatgccgaggacaggccgacgcttcggagccgacaagcaggaacttctggatccggaagtttcggtacgcgtctccatccgatgcctgttggcgttcaagaacgaatttcccgatgtaacggatccggaagaaaagctcaagtttacgctcgctgcctacaatgccggctcgggtcacgtggcggacgcaaggcgtttggctgcgaagtacgggggcaaccccaacgtatgggacaataacgtggaggcatacatccgcctcaagaaagaccctaactactataacgatcctgtctgtcgctccggctatctgcgaggtgcggagacgatcaactatgtacgcagcgtaatggctcgttatcaggcatacaaacagaaggattgataccactactgcatctaaagacagc Intra-Species Hit: Count: 0 Inter-species Hit: Count: 1 Min: 418 Max: 1674 Len: 1257 Subject: gi|89109364|ref|AP_003144.1| predicted transglycosylase [Escherichia coli W3110] HSP 1 e-value: 3.0E-31 bit: 133.0 Len: 1257 Query Start:418 Query End:1674 Subject Strand: null Subject Start: 1 Subject End: 402 ................................................................................................................................................................................................................................................................................................................................................................................................................................. V A T L S S S T T Y F V Y K D E E M G Y E Y E L A K L L A D S L G L T L V V E V V P N D E A L Y A A V D T G L V D M A I T P Q A A T F K G K Q K Y L F V G P E E I S G Q V L V Q R S D G N P R I T N V T D L I G K P V T V M A H T R Y A D R L R H L N E - - - - E V G G G I D S L I L S G D T L T T E D L I T Q V A K G E I D Y T F A D E Q L A R L A R T Y Y R N I D I S L K V G F G Q R L Q W I - - V R K D N H C L A R W V N R W G E S I P D K E S Y R A I Q K R Y F E M S K S D D E V E E E Q S A P R P R I K L R K G S I S Q Y D T I F K H Y A E E F R L G W S W H L L A S I A Y H E S R F N A G I V G W S G A R G L M G I M P R T G R R F G A D K Q E L L D P E V S V R V S I R C L L A F K N E F P D V T D P E E K L K F T L A A Y N A G S G H V A D A R R L A A K Y G G N P N V W D N N V E A Y I R L K K D P N Y Y N D P V C R S G Y L R G A E T I N Y V R S V M A R Y Q .............................................. ................................................................................................................................................................................................................................................................................................................................................................................................................................. M S T I H T P L T Y N E I N G K P F G L D Y E L A K Q F A D Y L G V K L K V T V R Q N I S Q L F D D L D N G N A D L L A A G L V Y N S E R V K N Y Q - P G P T Y Y S V S Q Q L V Y K V G Q Y R P R T L G N L T A E Q L T V A P G H V V V N D L Q T L K E T K F P E L S W K V D - - - - - - D K K G S A E L M E D V I E G K L D Y T I A D S V A I S L F Q R V H P E L A V A L D I T D E Q P V T W F S P L D G D N T L S A A L L D F F N E M N E D G T L A R - I E E K Y L G H G D D F D Y V D T - - - - - R T F L R A V D A V L P Q L K P L F E K Y A E E I - - - - D W R L L A A I A Y Q E S H W D A Q A T S P T G V R G M M M L T K N T A Q S L G I T D R T - - D A E Q S I S G G V R Y L Q D M M S K V P E S V P E N E R I W F A L A A Y N M G Y A H M L D A R A L T A K T K G N P D S W A D V K Q R L P L L S Q K P Y Y S K - - - L T Y G Y A R G H E A Y A Y V E N I - R K Y Q .............................................. Find nr database================================================ Query_seq: PG1223:PG1225|PG1223:PG1225:hypothetical protein:ABC transporter, ATP-binding protein:->->:1299805..1301524 1720 tgtcatttagccgtttaatacaaaacaccgtcgttcgatagaatctcgctgacatactgcgatttggctttaacaggagatctctattgctctgcaaatgtaacgaaaagaccgaccggacagaaactcttgaagaaagcgacaggcttcggaagccgctttatcggaaagtcgttatcttcgttcgtcaaagagatacctgtgtatctcgtcaatacggtatttatcatcgttatgcccatatcgaaaaaatcttttggcagatggcttttatgtatggtcggtcttgccgcttccatccttgtaggagccttgtctcagagttgccgaggctgtgtgtccgaagaggggagagccgacagcatcccatgcgactcctctgtcgtatcggggctgcgctctgcggacacgctacgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcatacaaacagaaggattgataccactactgcatctaaagacagc Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 tgtcatttagccgtttaatacaaaacaccgtcgttcgatagaatctcgctgacatactgcgatttggctttaacaggagatctctattgctctgcaaatgtaacgaaaagaccgaccggacagaaactcttgaagaaagcgacaggcttcggaagccgctttatcggaaagtcgttatcttcgttcgtcaaagagatacctgtgtatctcgtcaatacggtatttatcatcgttatgcccatatcgaaaaaatcttttggcagatggcttttatgtatggtcggtcttgccgcttccatccttgtaggagccttgtctcagagttgccgaggctgtgtgtccgaagaggggagagccgacagcatcccatgcgactcctctgtcgtatcggggctgcgctctgcggacacgctacgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcatacaaacagaaggattgataccactactgcatctaaagacagc Predict ORF larger than 30AA ================================================ Protein_Len: 35 Strand: + Start: 200 End: 304 ....................................................................................................................................................................................................... M C I S S I R Y L S S L C P Y R K N L L A D G F Y V W S V L P L P S L ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 60 Strand: + Start: 54 End: 476 ..................................................... M L R F G F N R R S L L L C K C N E K T D R T E T L E E S D R L R K P L Y R K V V I F V R Q R D T C V S R Q Y G I Y H R ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 60 Strand: + Start: 335 End: 517 .............................................................................................................................................................................................................................................................................................................................................. M C P K R G E P T A S H A T P L S Y R G C A L R T R Y A W L H S H H R P P T S C T K T K K W A M S T S W P S C S P T L W ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 48 Strand: + Start: 560 End: 703 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M L R S I P V W S I W Q L H L R P Q P S R V S R S I S S L V P K K Y R D K Y W C N A A T A I H V ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 660 End: 896 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M G T S I G A T Q R R Q S T Y N E R N R S Y R Q A R Y S H G T Y S L C R S A P A P E R R S G G R Y R F A D P Q R R Y P H ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 42 Strand: + Start: 978 End: 1103 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M D R P Q G Q S L S G A V G E P M G G I H P R Q G I V P S H T E A I L R D E Q E R R ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 34 Strand: + Start: 1175 End: 1276 ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M P F S S T M Q R S F G S A G L G I C S H P S P T T N R A S M P V S ............................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 60 Strand: + Start: 1164 End: 1547 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M A V R Y H F Q A L C R G V S A R L V L A S A R I H R L P R I A L Q C R Y R R L V R C Q R F D G Y H A E D R P T L R S R ............................................................................................................................................................................. Protein_Len: 60 Strand: + Start: 1433 End: 1657 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ M R K K S S S L R S L P T M P A R V T W R T Q G V W L R S T G A T P T Y G T I T W R H T S A S R K T L T T I T I L S V A ............................................................... Protein_Len: 60 Strand: + Start: 43 End: 1692 .......................................... M S L T Y C D L A L T G D L Y C S A N V T K R P T G Q K L L K K A T G F G S R F I G K S L S S F V K E I P V Y L V N T V ............................ Protein_Len: 38 Strand: + Start: 1605 End: 1718 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M S L R L S A R C G D D Q L C T Q R N G S L S G I Q T E G L I P L L H L K T .. Protein_Len: 35 Strand: - Start: 1457 End: 1561 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ A R Q R C H R S P D R P P R L A N P Q S T R P C G W R I P C Y R P P M ............................................................................................................................................................... Protein_Len: 60 Strand: - Start: 1248 End: 1451 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... I T P Q D P A L P K I P I M G L V P R R K P A S L C S S R S G S T E T R T E M R H R N A N L F S N G S T V S G S S F S M ............................................................................................................................................................................................................................................................................. Protein_Len: 60 Strand: - Start: 1002 End: 1187 ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... A R H T F R H P S D M G S L S D Y R A M C F R Y K S I L L L S S S T S S S C D A G R G R M L S L F P L I D C Y S V M K M ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 44 Strand: - Start: 947 End: 1078 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. N S L L S R V F A A I S R G C P C D N D P A T P S G I P P I W G R C P I T G L W V S A M .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 39 Strand: - Start: 762 End: 878 ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... A S R S R C R F S S T P P P I S E S I R L P S V R V V S S R I V C T A L P S M .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 33 Strand: - Start: 620 End: 718 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... P Y A S T D R R Q D R L F I P V L I P A V C R R C D V Y L S R L M .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 47 Strand: - Start: 606 End: 746 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. A A V K L P L C F Y R K T P G S S I D P C T N T C R L S P L G R I V F T V S R I P L G T V T M .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 60 Strand: - Start: 436 End: 1719 ................................................................................................................................................................................................................................................................................................................................................................................................................................................... P V I V H L C V D A E L F V R V V I V I R D T A G A I Q S T R L R D V I Y A A Y H S T I L C V F L L I S V V V A D L S M . Protein_Len: 57 Strand: - Start: 425 End: 595 ........................................................................................................................................................................................................................................................................................................................................................................................................................................ V R M M S W R S R T C L R L F P S H T R A P W A A R R S E P S S E P R L L P A W R R P V K H Q P R Y R D P R Y P M ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 41 Strand: - Start: 321 End: 443 ................................................................................................................................................................................................................................................................................................................................ L Q R P Q T D S S P L A S L M G H S E E T T D P S R E A S V S R T A V S E D D V M ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 51 Strand: - Start: 236 End: 388 ........................................................................................................................................................................................................................................... A W I S F I K Q C I A K I Y P R D Q R K W G Q L L R T E S N G L S H T R L P S L R C C G M R S R Q R M .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 87 End: 299 ...................................................................................... C F S K F F A V P K P L R K I P F D N D E N T L S I G T Y R T L V T N I M T I G M D F F D K P L H S K H I T P R A A E M ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 48 Strand: - Start: 2 End: 145 . D N L R K I C F V T T R Y F R A S M S R N P K L L L D R N S Q L H L S F V S R V S V R S S L S M ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... tgtcatttagccgtttaatacaaaacaccgtcgttcgatagaatctcgctgacatactgcgatttggctttaacaggagatctctattgctctgcaaatgtaacgaaaagaccgaccggacagaaactcttgaagaaagcgacaggcttcggaagccgctttatcggaaagtcgttatcttcgttcgtcaaagagatacctgtgtatctcgtcaatacggtatttatcatcgttatgcccatatcgaaaaaatcttttggcagatggcttttatgtatggtcggtcttgccgcttccatccttgtaggagccttgtctcagagttgccgaggctgtgtgtccgaagaggggagagccgacagcatcccatgcgactcctctgtcgtatcggggctgcgctctgcggacacgctacgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcatacaaacagaaggattgataccactactgcatctaaagacagc Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: - Score: 82 Start: 1159 End: 1188 ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGAAAATGGTATCGTACTGCGATATACT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ tgtcatttagccgtttaatacaaaacaccgtcgttcgatagaatctcgctgacatactgcgatttggctttaacaggagatctctattgctctgcaaatgtaacgaaaagaccgaccggacagaaactcttgaagaaagcgacaggcttcggaagccgctttatcggaaagtcgttatcttcgttcgtcaaagagatacctgtgtatctcgtcaatacggtatttatcatcgttatgcccatatcgaaaaaatcttttggcagatggcttttatgtatggtcggtcttgccgcttccatccttgtaggagccttgtctcagagttgccgaggctgtgtgtccgaagaggggagagccgacagcatcccatgcgactcctctgtcgtatcggggctgcgctctgcggacacgctacgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcatacaaacagaaggattgataccactactgcatctaaagacagc Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 41 HP_score: -3.4 Tail_Score: -2.75481 Start: 630 End: 642 Full_Region: ttcttcgggaccaac gaag agata cttc tgcttacccttgaag .....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gaagagatacttc...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 47 HP_score: -2.5 Tail_Score: -3.52539 Start: 633 End: 661 Full_Region: ccaatacttgtcccg atatttcttcg ggaccaa cgaagagatac ttctgcttacccttg ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atatttcttcgggaccaacgaagagatac................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Find igs database================================================ Query_seq: PG1223:PG1225|PG1223:PG1225:hypothetical protein:ABC transporter, ATP-binding protein:->->:1299805..1301524 1720 tgtcatttagccgtttaatacaaaacaccgtcgttcgatagaatctcgctgacatactgcgatttggctttaacaggagatctctattgctctgcaaatgtaacgaaaagaccgaccggacagaaactcttgaagaaagcgacaggcttcggaagccgctttatcggaaagtcgttatcttcgttcgtcaaagagatacctgtgtatctcgtcaatacggtatttatcatcgttatgcccatatcgaaaaaatcttttggcagatggcttttatgtatggtcggtcttgccgcttccatccttgtaggagccttgtctcagagttgccgaggctgtgtgtccgaagaggggagagccgacagcatcccatgcgactcctctgtcgtatcggggctgcgctctgcggacacgctacgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcatacaaacagaaggattgataccactactgcatctaaagacagc Intra-Species Hit: Count: 1 Min: 1 Max: 1720 Len: 1720 Subject: NC_002950_PG1223_PG1225|hypothetical protein:ABC transporter, ATP-binding protein|POSITIVE:POSITIVE|[1299805,1301524]|1720 HSP 1 e-value: 0.0 bit: 827.0 Len: 417 Query Start:1 Query End:417 Subject Strand: POSITIVE Subject Start: 1 Subject End: 417 tgtcatttagccgtttaatacaaaacaccgtcgttcgatagaatctcgctgacatactgcgatttggctttaacaggagatctctattgctctgcaaatgtaacgaaaagaccgaccggacagaaactcttgaagaaagcgacaggcttcggaagccgctttatcggaaagtcgttatcttcgttcgtcaaagagatacctgtgtatctcgtcaatacggtatttatcatcgttatgcccatatcgaaaaaatcttttggcagatggcttttatgtatggtcggtcttgccgcttccatccttgtaggagccttgtctcagagttgccgaggctgtgtgtccgaagaggggagagccgacagcatcccatgcgactcctctgtcgtatcggggctgcgctctgcggacacgctacgc....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... tgtcatttagccgtttaatacaaaacaccgtcgttcgatagaatctcgctgacatactgcgatttggctttaacaggagatctctattgctctgcaaatgtaacgaaaagaccgaccggacagaaactcttgaagaaagcgacaggcttcggaagccgctttatcggaaagtcgttatcttcgttcgtcaaagagatacctgtgtatctcgtcaatacggtatttatcatcgttatgcccatatcgaaaaaatcttttggcagatggcttttatgtatggtcggtcttgccgcttccatccttgtaggagccttgtctcagagttgccgaggctgtgtgtccgaagaggggagagccgacagcatcccatgcgactcctctgtcgtatcggggctgcgctctgcggacacgctacgc....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 3.0E-16 bit: 89.7 Len: 45 Query Start:1676 Query End:1720 Subject Strand: POSITIVE Subject Start: 1676 Subject End: 1720 ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................catacaaacagaaggattgataccactactgcatctaaagacagc ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................catacaaacagaaggattgataccactactgcatctaaagacagc Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UGUCAUUUAGCCGUUUAAUACAAAACACCGUCGUUCGAUAGAAUCUCGCUGACAUACUGCGAUUUGGCUUUAACAGGAGAUCUCUAUUGCUCUGCAAAUGUAACGAAAAGACCGACCGGACAGAAACUCUUGAAGAAAGCGACAGGCUUCGGAAGCCGCUUUAUCGGAAAGUCGUUAUCUUCGUUCGUCAAAGAGAUACCUGUGUAUCUCGUCAAUACGGUAUUUAUCAUCGUUAUGCCCAUAUCGAAAAAAUCUUUUGGCAGAUGGCUUUUAUGUAUGGUCGGUCUUGCCGCUUCCAUCCUUGUAGGAGCCUUGUCUCAGAGUUGCCGAGGCUGUGUGUCCGAAGAGGGGAGAGCCGACAGCAUCCCAUGCGACUCCUCUGUCGUAUCGGGGCUGCGCUCUGCGGACACGCUACGCGUGGCUACACUCUCAUCAUCGACCACCUACUUCGUGUACAAAGACGAAGAAAUGGGCUAUGAGUACGAGCUGGCCAAGCUGCUCGCCGACUCUCUGGGCUUGACUCUGGUCGUAGAAGUGGUGCCCAACGACGAGGCACUUUAUGCUGCGGUCGAUACCGGUCUGGUCGAUAUGGCAAUUACACCUCAGGCCGCAACCUUCAAGGGUAAGCAGAAGUAUCUCUUCGUUGGUCCCGAAGAAAUAUCGGGACAAGUAUUGGUGCAACGCAGCGACGGCAAUCCACGUAUAACGAACGUAACAGAUCUUAUCGGCAAGCCCGUUACAGUCAUGGCACAUACUCGCUAUGCCGAUCGGCUCCGGCACCUGAACGAAGAAGUGGGGGGAGGUAUCGAUUCGCUGAUCCUCAGCGGAGAUACCCUCACGACCGAAGACCUGAUCACGCAGGUAGCCAAAGGAGAAAUAGACUACACCUUUGCCGAUGAACAGUUGGCACGACUGGCACGAACCUACUACCGCAAUAUAGACAUCAGUUUGAAAGUAGGCUUCGGACAAAGGCUGCAAUGGAUCGUCCGCAAGGACAAUCAUUGUCUGGCGCGGUGGGUGAACCGAUGGGGGGAAUCCAUCCCCGACAAGGAAUCGUACCGAGCCAUACAGAAGCGAUACUUCGAGAUGAGCAAGAGCGACGAUGAGGUCGAAGAGGAGCAGUCCGCUCCCCGACCUCGCAUCAAGCUGAGGAAAGGGAGUAUAUCGCAGUACGAUACCAUUUUCAAGCACUAUGCAGAGGAGUUUCGGCUCGGCUGGUCUUGGCAUCUGCUCGCAUCCAUCGCCUACCACGAAUCGCGCUUCAAUGCCGGUAUCGUAGGCUGGUCCGGUGCCAGAGGUUUGAUGGGUAUCAUGCCGAGGACAGGCCGACGCUUCGGAGCCGACAAGCAGGAACUUCUGGAUCCGGAAGUUUCGGUACGCGUCUCCAUCCGAUGCCUGUUGGCGUUCAAGAACGAAUUUCCCGAUGUAACGGAUCCGGAAGAAAAGCUCAAGUUUACGCUCGCUGCCUACAAUGCCGGCUCGGGUCACGUGGCGGACGCAAGGCGUUUGGCUGCGAAGUACGGGGGCAACCCCAACGUAUGGGACAAUAACGUGGAGGCAUACAUCCGCCUCAAGAAAGACCCUAACUACUAUAACGAUCCUGUCUGUCGCUCCGGCUAUCUGCGAGGUGCGGAGACGAUCAACUAUGUACGCAGCGUAAUGGCUCGUUAUCAGGCAUACAAACAGAAGGAUUGAUACCACUACUGCAUCUAAAGACAGC ((((.(((((..((((......))))...((.(..((((((((((((.(((...((..((......))..)).)))))))).)))))))..).))..............((((.(((((((.(((.....((((((.((((((.((((.....)))).((.....))...)))))).))))))))))))...(((((((....))))))).......))))..........((((.(((((.................(((((..((((((((((.((((.(((.....)))...))))...)))))))))))))))..(((((((.((((...(((((((((.((((.((....))....((((((((((((((......))))))).)))).))).)))).)))))))))...((.((((((..(((...((((.(.(((....((((((.(....).))))))...))).).))))....))).)))))).))..)))).))))))).))))).))))...))))((((.(((((((((..(..(((((.((..(((((((((((((((((..((((((...(((((..(..((((.(((.(((......)))...)))))))...)..)))))..(((((((((((((((....).)))))))..((.(((.(((...))).)))..))..........))))))).....)))))).)))))))........((((..((((((........))))))..(((((.(((((.((((.((.((......(((.(((.((((((..(((((((.....))))))))))))))))....)))......)).)).(((((((((((...((((..((((((..((((((((((((....((((((...)))))).......((((((....(((.............)))..))))))..)))).)))))).))....(((((((((....))))....((((...((((((((.((((...(((((((((((.....)))))...............(((((......((((.....)))).(((((..(((((.(...(.((((((((..(.(((((.....)))))))))))))))....(((((((....(..(((.(((((.....)))))..)))..)..((.....)).............)))))))).))))).))))))))))...))))))..))))....)))))))).))))((((((((.((((((.(((((((.((....((((((.(.(((.....))).)...))))))...)).))))).))....(((..(..((((((((((((......((((....(((.((.....((((((....))))))...)))))......)))).....))))))))))))..((((....))))...)..))))))))).))))))))..(((((.((..((((((((...)))))).))..))......((((....)))).((((((......)).)))).(((((........)))))......))))).............))))).))))))..))))))))))))))).))))))))).))))).....)))))))))))))))).)))))..)..)))...(((.(.....).)))..)))))).))))..))))))))).. (-634.42) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ GCUGUCUUUAGAUGCAGUAGUGGUAUCAAUCCUUCUGUUUGUAUGCCUGAUAACGAGCCAUUACGCUGCGUACAUAGUUGAUCGUCUCCGCACCUCGCAGAUAGCCGGAGCGACAGACAGGAUCGUUAUAGUAGUUAGGGUCUUUCUUGAGGCGGAUGUAUGCCUCCACGUUAUUGUCCCAUACGUUGGGGUUGCCCCCGUACUUCGCAGCCAAACGCCUUGCGUCCGCCACGUGACCCGAGCCGGCAUUGUAGGCAGCGAGCGUAAACUUGAGCUUUUCUUCCGGAUCCGUUACAUCGGGAAAUUCGUUCUUGAACGCCAACAGGCAUCGGAUGGAGACGCGUACCGAAACUUCCGGAUCCAGAAGUUCCUGCUUGUCGGCUCCGAAGCGUCGGCCUGUCCUCGGCAUGAUACCCAUCAAACCUCUGGCACCGGACCAGCCUACGAUACCGGCAUUGAAGCGCGAUUCGUGGUAGGCGAUGGAUGCGAGCAGAUGCCAAGACCAGCCGAGCCGAAACUCCUCUGCAUAGUGCUUGAAAAUGGUAUCGUACUGCGAUAUACUCCCUUUCCUCAGCUUGAUGCGAGGUCGGGGAGCGGACUGCUCCUCUUCGACCUCAUCGUCGCUCUUGCUCAUCUCGAAGUAUCGCUUCUGUAUGGCUCGGUACGAUUCCUUGUCGGGGAUGGAUUCCCCCCAUCGGUUCACCCACCGCGCCAGACAAUGAUUGUCCUUGCGGACGAUCCAUUGCAGCCUUUGUCCGAAGCCUACUUUCAAACUGAUGUCUAUAUUGCGGUAGUAGGUUCGUGCCAGUCGUGCCAACUGUUCAUCGGCAAAGGUGUAGUCUAUUUCUCCUUUGGCUACCUGCGUGAUCAGGUCUUCGGUCGUGAGGGUAUCUCCGCUGAGGAUCAGCGAAUCGAUACCUCCCCCCACUUCUUCGUUCAGGUGCCGGAGCCGAUCGGCAUAGCGAGUAUGUGCCAUGACUGUAACGGGCUUGCCGAUAAGAUCUGUUACGUUCGUUAUACGUGGAUUGCCGUCGCUGCGUUGCACCAAUACUUGUCCCGAUAUUUCUUCGGGACCAACGAAGAGAUACUUCUGCUUACCCUUGAAGGUUGCGGCCUGAGGUGUAAUUGCCAUAUCGACCAGACCGGUAUCGACCGCAGCAUAAAGUGCCUCGUCGUUGGGCACCACUUCUACGACCAGAGUCAAGCCCAGAGAGUCGGCGAGCAGCUUGGCCAGCUCGUACUCAUAGCCCAUUUCUUCGUCUUUGUACACGAAGUAGGUGGUCGAUGAUGAGAGUGUAGCCACGCGUAGCGUGUCCGCAGAGCGCAGCCCCGAUACGACAGAGGAGUCGCAUGGGAUGCUGUCGGCUCUCCCCUCUUCGGACACACAGCCUCGGCAACUCUGAGACAAGGCUCCUACAAGGAUGGAAGCGGCAAGACCGACCAUACAUAAAAGCCAUCUGCCAAAAGAUUUUUUCGAUAUGGGCAUAACGAUGAUAAAUACCGUAUUGACGAGAUACACAGGUAUCUCUUUGACGAACGAAGAUAACGACUUUCCGAUAAAGCGGCUUCCGAAGCCUGUCGCUUUCUUCAAGAGUUUCUGUCCGGUCGGUCUUUUCGUUACAUUUGCAGAGCAAUAGAGAUCUCCUGUUAAAGCCAAAUCGCAGUAUGUCAGCGAGAUUCUAUCGAACGACGGUGUUUUGUAUUAAACGGCUAAAUGACA ..........(((((.......)))))......((((.(((((((((..(..(((((.((((..((((((......(((((((..........(.(((((.(((((((((.((..((((((..((((..........(((((.....((.((((((((((.((..((((((...........))).)))((((((...........))))))....))..)))))))))).)).)))))(((((((((..(((((....((((..........))))..((((.(((((((.....(((((((.....)))))))..(((....))).(((((((......))).))))......))))))).))))..))))).)))))))))...))))....))))))...(((((((..............(((((((.(((((.((..((((((((((((((....(((.((((((.(....).)))))))))....))))))....(.((((..((.((......)).))...).))).).....))))))))(((((((((((............(((..((((.((((((((((((.((....)).))))))))))))..)))))))......((((..((((((..(((((....((((.((((......((.((..(((((.....))))).))..)).......)))).))))..((((((((((((....))))))).)))))............))))).))))))......))))..))))))))))).)).))))))))))))))))))).((((..((((......)))))))).......))))))))))).))))).)....(((((..(((((....((((....(((((.....))))).....(((((((.......(((((((((..(((((((.(((.((.(((((...(...((((((..((((.(((((((((((((....)))).))))))))).))))..)))))))..)))))))))).))..))))).......(((((((.......))))))).)))))))))......((((..(((......))).))))...)))))))...))))....)))))))))).).))))))))))))....)))).)))))..)..)))).......))))).))))((((((((...(((((.(.(((((.((.((((..((((....((((.(.((((((((((((........)))))).)))))).).))))...))))...)))).))...(.(((((((.((((((((((((((...((((......))))..))))..)))))..)))))........))))))).).).)))).).)))))...(((((((.((.....(((((..(((((.((((((((((............((((((((....((.....))......))))....))))........(((...((.(((((((....)))))))))..)))......((((..((((((..((.((((((((...........)))))))).))..))))))..)))).)))))))))).))))).)))))...(..(.((((((.(((((((.((..((......))..))...))).)))))))))).)..)...)).))))))).......))))...)))). (-615.56) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 483 1370 1325 224 173 NC_002950:PG0471|5end_hypothetical_protein_512288..512518_POSITIVE 472 840 796 134 93 NC_002950:PG0713|5end_anthranilate_synthase_component_II_767749..767979_NEGATIVE 469 1244 1201 67 14 NC_002950:PG1992|5end_glucose-inhibited_division_protein_A_2081410..2081640_POSITIVE 467 526 485 170 133 NC_002950:PG0307|5end_NADH-ubiquinone_oxidoreductase_342560..342790_POSITIVE 465 1149 1101 81 36 NC_002950:PG0268|5end_tRNA_(5-methylaminomethyl-2-thiouridylate)-methyltransferase_300898..301128_POSITIVE 463 1269 1222 208 154 NC_002950:PG2032|5end_primosomal_protein_N'_2133381..2133611_NEGATIVE 461 935 891 96 52 NC_002950:PG0242|5end_conserved_hypothetical_protein_TIGR00096_278960..279190_NEGATIVE 459 520 471 174 94 NC_002950:PG1966|5end_hypothetical_protein_2056924..2057154_NEGATIVE 453 1517 1473 222 157 NC_002950:PG1875|5end_hemolysin_1970621..1970851_NEGATIVE 451 373 331 189 144 NC_002950:PG0326|5end_hypothetical_protein_360974..361204_NEGATIVE 446 1499 1457 110 61 NC_002950:PG0145|5end_hypothetical_protein_167831..168061_POSITIVE 443 578 531 201 149 NC_002950:PG0607|5end_hypothetical_protein_662552..662782_POSITIVE 441 1259 1211 213 167 NC_002950:PG1077|5end_electron_transfer_flavoprotein,_beta_subunit_1144639..1144869_POSITIVE 439 1340 1291 65 9 NC_002950:PG1497|5end_DNA-binding_protein,_histone-like_family_1574085..1574315_POSITIVE 439 389 341 190 146 NC_002950:PG0070|5end_UDP-N-acetylglucosamine_acyltransferase_84734..84964_NEGATIVE 438 610 561 71 32 NC_002950:PG2124|5end_glyceraldehyde_3-phosphate_dehydrogenase,_type_I_2230174..2230404_POSITIVE 438 1299 1256 188 138 NC_002950:PG1485|5end_conjugative_transposon_protein_TraC_1560370..1560600_NEGATIVE 438 406 362 175 125 NC_002950:PG1226|5end_peptidyl-prolyl_cis-trans_isomerase,_cyclophilin-type_1303264..1303494_POSITIVE 438 1495 1451 228 170 NC_002950:PG0770|5end_hypothetical_protein_824575..824805_NEGATIVE 437 1357 1314 54 4 NC_002950:PG0083|5end_hypothetical_protein_96952..97182_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 465 1149 1101 76 31 NC_002950:PG0267|3end_arginyl-tRNA_synthetase_300973..301123_POSITIVE 461 935 891 80 36 NC_002950:PG0243|3end_hypothetical_protein_278976..279126_NEGATIVE 449 810 763 95 46 NC_002950:PG0627|3end_RNA-binding_protein_681142..681292_NEGATIVE 448 1514 1472 111 60 NC_002950:PG1218|3end_hypothetical_protein_1296475..1296625_POSITIVE 446 1338 1291 59 20 NC_002950:PG2013|3end_CRISPR-associated_protein_Cas2_2104226..2104376_NEGATIVE 441 415 376 43 4 NC_002950:PG0957|3end_riboflavin_biosynthesis_protein_RibF_1018131..1018281_POSITIVE 439 820 771 72 31 NC_002950:PG0143|3end_hydrolase,_carbon-nitrogen_family_165747..165897_NEGATIVE 438 610 561 60 21 NC_002950:PG2123|3end_hypothetical_protein_2230243..2230393_POSITIVE 434 420 377 107 67 NC_002950:PG0801|3end_polyA_polymerase_family_protein_856263..856413_NEGATIVE 433 1510 1462 137 97 NC_002950:PG1497|3end_DNA-binding_protein,_histone-like_family_1574635..1574785_POSITIVE 431 404 361 56 3 NC_002950:PG1247|3end_3-dehydroquinate_synthase_1325585..1325735_POSITIVE 428 815 771 58 10 NC_002950:PG2110|3end_thiamine_biosynthesis_protein_ThiC_2219449..2219599_NEGATIVE 428 366 328 43 1 NC_002950:PG0450|3end_hypothetical_protein_491602..491752_POSITIVE 424 417 376 57 14 NC_002950:PG0605|3end_hypothetical_protein_661165..661315_NEGATIVE 421 409 365 142 100 NC_002950:PG0033|3end_RmuC_domain_protein_40242..40392_NEGATIVE 417 1140 1094 61 7 NC_002950:PG2207|3end_hypothetical_protein_2319142..2319292_NEGATIVE 417 1509 1463 151 98 NC_002950:PG0415|3end_peptidyl-prolyl_cis-trans_isomerase,_PPIC-type_453714..453864_NEGATIVE 415 405 368 38 5 NC_002950:PG0076|3end_N-acetylmuramoyl-L-alanine_amidase,_family_4_90392..90542_NEGATIVE 413 390 341 80 22 NC_002950:PG0770|3end_hypothetical_protein_824159..824309_NEGATIVE 413 1524 1482 135 77 NC_002950:PG0381|3end_cell_volume_regulation_protein_CvrA_411185..411335_NEGATIVE