Origin IGS: aattctatattcgttttttgttgttgtctcgttttctttcgttgtttatgccccatcgaaagggtcgtacgctacaacataaacaatttgcgtgccaaaaaacaaaccggctccgatactgccaaaaggtgacagaatgtcactacatgaggcacacaatagctcttaaacatgacgaacaatgactctgtacacgtcagtacacaacagcaccacgaagtggcgaaatttccgcatatgcagaaatatattttcgtatatactccgataaattttcgtatatacggaaataaatttccttatatacgcaaatatatttctctatatacacaataaagagaggctcggaatattgctctggaactctataggagaatgaatccagagcaaagggctaaatctgcttgtgtaaacctaaggggaaataccgatcgacagttgtaaccccagcataggactaaccggtatgtctgtaaacatatatgaatcccgcgcaccccaactgtcaacttttttcagtacacaacagtttgcgagaatatccctacctttacacgtaaagaaaatagaaagcaaatt .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 aatttgctttctattttctttacgtgtaaaggtagggatattctcgcaaactgttgtgtactgaaaaaagttgacagttggggtgcgcgggattcatatatgtttacagacataccggttagtcctatgctggggttacaactgtcgatcggtatttccccttaggtttacacaagcagatttagccctttgctctggattcattctcctatagagttccagagcaatattccgagcctctctttattgtgtatatagagaaatatatttgcgtatataaggaaatttatttccgtatatacgaaaatttatcggagtatatacgaaaatatatttctgcatatgcggaaatttcgccacttcgtggtgctgttgtgtactgacgtgtacagagtcattgttcgtcatgtttaagagctattgtgtgcctcatgtagtgacattctgtcaccttttggcagtatcggagccggtttgttttttggcacgcaaattgtttatgttgtagcgtacgaccctttcgatggggcataaacaacgaaagaaaacgagacaacaacaaaaaacgaatatagaatt Mask Tandem Repeat Region ================================================ aattctatattcgttttttgttgttgtctcgttttctttcgttgtttatgccccatcgaaagggtcgtacgctacaacataaacaatttgcgtgccaaaaaacaaaccggctccgatactgccaaaaggtgacagaatgtcactacatgaggcacacaatagctcttaaacatgacgaacaatgactctgtacacgtcagtacacaacagcaccacgaagtggcgaaatttccgcatatgcagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngagaggctcggaatattgctctggaactctataggagaatgaatccagagcaaagggctaaatctgcttgtgtaaacctaaggggaaataccgatcgacagttgtaaccccagcataggactaaccggtatgtctgtaaacatatatgaatcccgcgcaccccaactgtcaacttttttcagtacacaacagtttgcgagaatatccctacctttacacgtaaagaaaatagaaagcaaatt Find is-nt database================================================ Query_seq: PG1208:PG1209|PG1208:PG1209:molecular chaperone DnaK:hypothetical protein:<-->:1287006..1287584 579 aattctatattcgttttttgttgttgtctcgttttctttcgttgtttatgccccatcgaaagggtcgtacgctacaacataaacaatttgcgtgccaaaaaacaaaccggctccgatactgccaaaaggtgacagaatgtcactacatgaggcacacaatagctcttaaacatgacgaacaatgactctgtacacgtcagtacacaacagcaccacgaagtggcgaaatttccgcatatgcagaaatatattttcgtatatactccgataaattttcgtatatacggaaataaatttccttatatacgcaaatatatttctctatatacacaataaagagaggctcggaatattgctctggaactctataggagaatgaatccagagcaaagggctaaatctgcttgtgtaaacctaaggggaaataccgatcgacagttgtaaccccagcataggactaaccggtatgtctgtaaacatatatgaatcccgcgcaccccaactgtcaacttttttcagtacacaacagtttgcgagaatatccctacctttacacgtaaagaaaatagaaagcaaatt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PG1208:PG1209|PG1208:PG1209:molecular chaperone DnaK:hypothetical protein:<-->:1287006..1287584 579 aattctatattcgttttttgttgttgtctcgttttctttcgttgtttatgccccatcgaaagggtcgtacgctacaacataaacaatttgcgtgccaaaaaacaaaccggctccgatactgccaaaaggtgacagaatgtcactacatgaggcacacaatagctcttaaacatgacgaacaatgactctgtacacgtcagtacacaacagcaccacgaagtggcgaaatttccgcatatgcagaaatatattttcgtatatactccgataaattttcgtatatacggaaataaatttccttatatacgcaaatatatttctctatatacacaataaagagaggctcggaatattgctctggaactctataggagaatgaatccagagcaaagggctaaatctgcttgtgtaaacctaaggggaaataccgatcgacagttgtaaccccagcataggactaaccggtatgtctgtaaacatatatgaatcccgcgcaccccaactgtcaacttttttcagtacacaacagtttgcgagaatatccctacctttacacgtaaagaaaatagaaagcaaatt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PG1208:PG1209|PG1208:PG1209:molecular chaperone DnaK:hypothetical protein:<-->:1287006..1287584 579 aattctatattcgttttttgttgttgtctcgttttctttcgttgtttatgccccatcgaaagggtcgtacgctacaacataaacaatttgcgtgccaaaaaacaaaccggctccgatactgccaaaaggtgacagaatgtcactacatgaggcacacaatagctcttaaacatgacgaacaatgactctgtacacgtcagtacacaacagcaccacgaagtggcgaaatttccgcatatgcagaaatatattttcgtatatactccgataaattttcgtatatacggaaataaatttccttatatacgcaaatatatttctctatatacacaataaagagaggctcggaatattgctctggaactctataggagaatgaatccagagcaaagggctaaatctgcttgtgtaaacctaaggggaaataccgatcgacagttgtaaccccagcataggactaaccggtatgtctgtaaacatatatgaatcccgcgcaccccaactgtcaacttttttcagtacacaacagtttgcgagaatatccctacctttacacgtaaagaaaatagaaagcaaatt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 1 Min: 217 Max: 441 Len: 225 Subject: UniRef90_Q7MXC9 Cluster: Hypothetical protein; n=1; Porphyromonas gingivalis|Rep: Hypothetical protein - Porphyromonas gingivalis (Bacteroides gingivalis) HSP 1 e-value: 8.0E-29 bit: 129.0 Len: 225 Query Start:217 Query End:441 Subject Strand: null Subject Start: 46 Subject End: 122 ........................................................................................................................................................................................................................ E V A K F P H M Q K Y I F V Y T P I N F R I Y G N K F P Y I R K Y I S L Y T Q * R E A R N I A L E L - - Y R R M N P E Q R A K S A C V N L R G N T D R Q L .......................................................................................................................................... ........................................................................................................................................................................................................................ K V A K F P H M R K Y I F V Y T P I N F L I Y G N I F P Y I H K S L S L Y T Q Q R E A R N I A P E L Y N Y R R M N P E Q R A K S A C V N L R G N T N R Q L .......................................................................................................................................... aattctatattcgttttttgttgttgtctcgttttctttcgttgtttatgccccatcgaaagggtcgtacgctacaacataaacaatttgcgtgccaaaaaacaaaccggctccgatactgccaaaaggtgacagaatgtcactacatgaggcacacaatagctcttaaacatgacgaacaatgactctgtacacgtcagtacacaacagcaccacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaccccagcataggactaaccggtatgtctgtaaacatatatgaatcccgcgcaccccaactgtcaacttttttcagtacacaacagtttgcgagaatatccctacctttacacgtaaagaaaatagaaagcaaatt Predict ORF larger than 30AA ================================================ Protein_Len: 41 Strand: + Start: 7 End: 129 ...... M F V F C C C L V F F R C L C P I E R V V R Y N I N N L R A K K Q T G S D T A K R .................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 58 Strand: + Start: 9 End: 182 ........ M R F L L L S R F L S L F M P H R K G R T L Q H K Q F A C Q K T N R L R Y C Q K V T E C H Y M R H T I A L K H D E Q ............................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 54 Strand: + Start: 172 End: 333 ........................................................................................................................................................................... M T N N D S V H V S T Q Q H H E V A K F P H M Q K Y I F V Y T P I N F R I Y G N K F P Y I R K Y I S L Y T Q ...................................................................................................................................................................................................................................................... Protein_Len: 35 Strand: + Start: 272 End: 376 ............................................................................................................................................................................................................................................................................... M F V Y T E I N F L I Y A N I F L Y I H N K E R L G I L L W N S I G E ........................................................................................................................................................................................................... Protein_Len: 30 Strand: + Start: 352 End: 441 ............................................................................................................................................................................................................................................................................................................................................................... M A L E L Y R R M N P E Q R A K S A C V N L R G N T D R Q L .......................................................................................................................................... Protein_Len: 51 Strand: + Start: 425 End: 577 ........................................................................................................................................................................................................................................................................................................................................................................................................................................ M P I D S C N P S I G L T G M S V N I Y E S R A P Q L S T F F S T Q Q F A R I S L P L H V K K I E S K .. Protein_Len: 31 Strand: + Start: 487 End: 579 ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M P R T P T V N F F Q Y T T V C E N I P T F T R K E N R K Q I Protein_Len: 53 Strand: - Start: 418 End: 576 ................................................................................................................................................................................................................................................................................................................................................................................................................................. P S I G I S L Q L G L M P S V P I D T F M Y S D R A G W S D V K K L V C C N A L I D R G K C T F F I S L M ... Protein_Len: 47 Strand: - Start: 369 End: 509 ................................................................................................................................................................................................................................................................................................................................................................................ L L I F G S C L A L D A Q T F R L P F V S R C N Y G W C L V L R Y T Q L C I H I G R V G V T M ...................................................................... Protein_Len: 60 Strand: - Start: 200 End: 385 ....................................................................................................................................................................................................... V A G R L P S I E A Y A S I Y K R I Y E S L N E Y I R F Y I E K Y V C I Y K E I Y V I F L P E S Y Q E P V R Y S F S D M .................................................................................................................................................................................................. Protein_Len: 49 Strand: - Start: 169 End: 315 ........................................................................................................................................................................ V H R V I V R Y V D T C L L V V F H R F K R M H L F I N E Y I S R Y I K T Y V S I F K R I Y A F M ........................................................................................................................................................................................................................................................................ Protein_Len: 60 Strand: - Start: 75 End: 281 .......................................................................... C V P E S V A L L H C F T V V H P V C Y S K F M V F L S E T C T L V C C C W S T A F N G C I C F Y I K T Y V G I F K R M .......................................................................................................................................................................................................................................................................................................... Protein_Len: 37 Strand: - Start: 49 End: 159 ................................................ A G D F P D Y A V V Y V I Q T G F F L G A G I S G F P S L I D S C S A C M .................................................................................................................................................................................................................................................................................................................................................................................................................................... aattctatattcgttttttgttgttgtctcgttttctttcgttgtttatgccccatcgaaagggtcgtacgctacaacataaacaatttgcgtgccaaaaaacaaaccggctccgatactgccaaaaggtgacagaatgtcactacatgaggcacacaatagctcttaaacatgacgaacaatgactctgtacacgtcagtacacaacagcaccacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaccccagcataggactaaccggtatgtctgtaaacatatatgaatcccgcgcaccccaactgtcaacttttttcagtacacaacagtttgcgagaatatccctacctttacacgtaaagaaaatagaaagcaaatt Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: - Score: 81 Start: 449 End: 478 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTACAGACATACCGGTTAGTCCTATGCT..................................................................................................... Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ PromScan Matrix: RpoN Strand: - Score: 86 Start: 82 End: 98 .................................................................................TTGGCACGCAAATTGTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. aattctatattcgttttttgttgttgtctcgttttctttcgttgtttatgccccatcgaaagggtcgtacgctacaacataaacaatttgcgtgccaaaaaacaaaccggctccgatactgccaaaaggtgacagaatgtcactacatgaggcacacaatagctcttaaacatgacgaacaatgactctgtacacgtcagtacacaacagcaccacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaccccagcataggactaaccggtatgtctgtaaacatatatgaatcccgcgcaccccaactgtcaacttttttcagtacacaacagtttgcgagaatatccctacctttacacgtaaagaaaatagaaagcaaatt Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 89 HP_score: -10.2 Tail_Score: -4.17296 Start: 269 End: 316 Full_Region: TCGTATATACTCCGA TAAATTTTCGTATATACGGAAA TAAA TTTCCTTATATACGCAAATATA TTTCTCTATATACAC ............................................................................................................................................................................................................................................................................TAAATTTTCGTATATACGGAAATAAATTTCCTTATATACGCAAATATA....................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 80 HP_score: -11.0 Tail_Score: -3.41084 Start: 273 End: 312 Full_Region: ATATACTCCGATAAA TTTTCGTATATACGGAAA TAAA TTTCCTTATATACGCAAA TATATTTCTCTATAT ................................................................................................................................................................................................................................................................................TTTTCGTATATACGGAAATAAATTTCCTTATATACGCAAA........................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 86 HP_score: -11.0 Tail_Score: -3.89055 Start: 273 End: 312 Full_Region: atatagagaaatata tttgcgtatataaggaaa ttta tttccgtatatacgaaaa tttatcggagtatat ................................................................................................................................................................................................................................................................................tttgcgtatataaggaaatttatttccgtatatacgaaaa........................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 47 HP_score: -3.7 Tail_Score: -3.02829 Start: 353 End: 390 Full_Region: agcagatttagccct ttgctctggattcat tctcct atagagttccagagcaa tattccgagcctctc ................................................................................................................................................................................................................................................................................................................................................................ttgctctggattcattctcctatagagttccagagcaa............................................................................................................................................................................................. Find igs database================================================ Query_seq: PG1208:PG1209|PG1208:PG1209:molecular chaperone DnaK:hypothetical protein:<-->:1287006..1287584 579 aattctatattcgttttttgttgttgtctcgttttctttcgttgtttatgccccatcgaaagggtcgtacgctacaacataaacaatttgcgtgccaaaaaacaaaccggctccgatactgccaaaaggtgacagaatgtcactacatgaggcacacaatagctcttaaacatgacgaacaatgactctgtacacgtcagtacacaacagcaccacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaccccagcataggactaaccggtatgtctgtaaacatatatgaatcccgcgcaccccaactgtcaacttttttcagtacacaacagtttgcgagaatatccctacctttacacgtaaagaaaatagaaagcaaatt Intra-Species Hit: Count: 1 Min: 1 Max: 579 Len: 579 Subject: NC_002950_PG1208_PG1209|molecular chaperone DnaK:hypothetical protein|NEGATIVE:POSITIVE|[1287006,1287584]|579 HSP 1 e-value: 1.0E-119 bit: 428.0 Len: 216 Query Start:1 Query End:216 Subject Strand: POSITIVE Subject Start: 1 Subject End: 216 aattctatattcgttttttgttgttgtctcgttttctttcgttgtttatgccccatcgaaagggtcgtacgctacaacataaacaatttgcgtgccaaaaaacaaaccggctccgatactgccaaaaggtgacagaatgtcactacatgaggcacacaatagctcttaaacatgacgaacaatgactctgtacacgtcagtacacaacagcaccac........................................................................................................................................................................................................................................................................................................................................................................... aattctatattcgttttttgttgttgtctcgttttctttcgttgtttatgccccatcgaaagggtcgtacgctacaacataaacaatttgcgtgccaaaaaacaaaccggctccgatactgccaaaaggtgacagaatgtcactacatgaggcacacaatagctcttaaacatgacgaacaatgactctgtacacgtcagtacacaacagcaccac........................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 3.0E-72 bit: 274.0 Len: 138 Query Start:442 Query End:579 Subject Strand: POSITIVE Subject Start: 442 Subject End: 579 .........................................................................................................................................................................................................................................................................................................................................................................................................................................................taaccccagcataggactaaccggtatgtctgtaaacatatatgaatcccgcgcaccccaactgtcaacttttttcagtacacaacagtttgcgagaatatccctacctttacacgtaaagaaaatagaaagcaaatt .........................................................................................................................................................................................................................................................................................................................................................................................................................................................taaccccagcataggactaaccggtatgtctgtaaacatatatgaatcccgcgcaccccaactgtcaacttttttcagtacacaacagtttgcgagaatatccctacctttacacgtaaagaaaatagaaagcaaatt Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AAUUCUAUAUUCGUUUUUUGUUGUUGUCUCGUUUUCUUUCGUUGUUUAUGCCCCAUCGAAAGGGUCGUACGCUACAACAUAAACAAUUUGCGUGCCAAAAAACAAACCGGCUCCGAUACUGCCAAAAGGUGACAGAAUGUCACUACAUGAGGCACACAAUAGCUCUUAAACAUGACGAACAAUGACUCUGUACACGUCAGUACACAACAGCACCACGAAGUGGCGAAAUUUCCGCAUAUGCAGAAAUAUAUUUUCGUAUAUACUCCGAUAAAUUUUCGUAUAUACGGAAAUAAAUUUCCUUAUAUACGCAAAUAUAUUUCUCUAUAUACACAAUAAAGAGAGGCUCGGAAUAUUGCUCUGGAACUCUAUAGGAGAAUGAAUCCAGAGCAAAGGGCUAAAUCUGCUUGUGUAAACCUAAGGGGAAAUACCGAUCGACAGUUGUAACCCCAGCAUAGGACUAACCGGUAUGUCUGUAAACAUAUAUGAAUCCCGCGCACCCCAACUGUCAACUUUUUUCAGUACACAACAGUUUGCGAGAAUAUCCCUACCUUUACACGUAAAGAAAAUAGAAAGCAAAUU ............((((((((((....((((((...((...(((((.(((........((((((((((..((((((............(((.(((((............(((.........)))....((((((.....))))))......))))).)))..(((........(((((.(((.......)))...))))).........)))........))))))..((((((.(.((((.((((((((((((.((((((((....(((..((((((((....))))))))..)))....)))))))).)))))))))))).))))(((((((...(((..(((((......((((((((((.(((.....)))......)))))))))).)))))...)))..))))))).......).))))))..)))))((((((((........((...(((.......((((((......)))))).....))).))......))))))))..)))))....))).)))))))...))))))..........(((((....)))))..))))))))))..... (-154.07) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AAUUUGCUUUCUAUUUUCUUUACGUGUAAAGGUAGGGAUAUUCUCGCAAACUGUUGUGUACUGAAAAAAGUUGACAGUUGGGGUGCGCGGGAUUCAUAUAUGUUUACAGACAUACCGGUUAGUCCUAUGCUGGGGUUACAACUGUCGAUCGGUAUUUCCCCUUAGGUUUACACAAGCAGAUUUAGCCCUUUGCUCUGGAUUCAUUCUCCUAUAGAGUUCCAGAGCAAUAUUCCGAGCCUCUCUUUAUUGUGUAUAUAGAGAAAUAUAUUUGCGUAUAUAAGGAAAUUUAUUUCCGUAUAUACGAAAAUUUAUCGGAGUAUAUACGAAAAUAUAUUUCUGCAUAUGCGGAAAUUUCGCCACUUCGUGGUGCUGUUGUGUACUGACGUGUACAGAGUCAUUGUUCGUCAUGUUUAAGAGCUAUUGUGUGCCUCAUGUAGUGACAUUCUGUCACCUUUUGGCAGUAUCGGAGCCGGUUUGUUUUUUGGCACGCAAAUUGUUUAUGUUGUAGCGUACGACCCUUUCGAUGGGGCAUAAACAACGAAAGAAAACGAGACAACAACAAAAAACGAAUAUAGAAUU ........((((((.(((....(((((.((((..(((.....))).(((((((((.(((((((..(((((.((((((..((((..((((.(((((...((((((....))))))...(((((.((((....((((.....((((.....))))....)))).))))..(((((((.(((.....(((...(((((((((...(((((.....))))))))))))))(((((((((...(((((.(((.....))).))))).....((((.((((((((.(((((....))))).)))))))).))))...)))))))))..(((((.....((((((((....))))))))........)))))))).))))))))))))))).......)))))...((((...........))))...))))..)))).(((....)))..)))))).)))))..))))).)).)).)))))))..)))).)))))....((((...((((((..(((..(.((((......)))))........(....)...)))..)))))))))).....))).)))))).. (-174.72) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 954 140 91 231 182 NC_002950:PG1208|5end_molecular_chaperone_DnaK_1286915..1287145_NEGATIVE 694 445 403 211 165 NC_002950:PG1792|5end_sodium/hydrogen_antiporter_1881622..1881852_POSITIVE 675 260 211 204 154 NC_002950:PG0853|5end_DNA-binding_protein,_histone-like_family_914384..914614_POSITIVE 649 538 491 119 73 NC_002950:PG0274|5end_hypothetical_protein_306333..306563_POSITIVE 628 260 211 204 154 NC_002950:PG2152|5end_DNA-binding_protein,_histone-like_family_2259750..2259980_POSITIVE 546 530 484 122 78 NC_002950:PG0009|5end_ISPg5_transposase_Orf1_8466..8696_NEGATIVE 534 529 484 118 78 NC_002950:PG1709|5end_ISPg5,_transposase_Orf1_1794914..1795144_POSITIVE 528 530 484 119 78 NC_002950:PG2129|5end_ISPg5,_transposase_Orf1_2235248..2235478_NEGATIVE 506 524 484 113 78 NC_002950:PG2058|5end_ISPg5,_transposase_Orf1_2156390..2156620_NEGATIVE 506 524 484 113 78 NC_002950:PG1645|5end_ISPg5,_transposase_Orf1_1726062..1726292_NEGATIVE 506 524 484 113 78 NC_002950:PG0427|5end_ISPg5,_transposase_Orf1_465541..465771_NEGATIVE 506 524 484 113 78 NC_002950:PG0040|5end_ISPg5_transposase_Orf1_47934..48164_POSITIVE 497 538 494 121 73 NC_002950:PG1419|5end_ISPg5,_transposase_Orf1_1504997..1505227_POSITIVE 471 530 484 114 72 NC_002950:PG0590|5end_ISPg5,_transposase_Orf1_648035..648265_POSITIVE 468 524 484 106 72 NC_002950:PG0942|5end_ISPg5,_transposase_Orf1_1002063..1002293_POSITIVE 411 70 21 172 126 NC_002950:PG1285|5end_glucosamine-6-phosphate_deaminase_1362894..1363124_POSITIVE 406 389 341 227 180 NC_002950:PG1100|5end_hypothetical_protein_1169012..1169242_NEGATIVE 385 150 106 214 171 NC_002950:PG1310|5end_exsB_protein_1389084..1389314_POSITIVE 382 73 32 153 103 NC_002950:PG1665|5end_ABC_transporter,_permease_protein,_putative_1747110..1747340_POSITIVE 370 68 30 109 67 NC_002950:PG1302|5end_hypothetical_protein_1380637..1380867_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 649 538 491 76 30 NC_002950:PG0273|3end_4'-phosphopantetheinyl_transferase_family_protein_306370..306520_POSITIVE 382 73 32 130 80 NC_002950:PG1664|3end_ABC_transporter,_permease_protein,_putative_1747167..1747317_POSITIVE 328 124 86 149 109 NC_002950:PG1594|3end_ComEC/Rec2-related_protein_1672052..1672202_NEGATIVE 325 123 90 147 108 NC_002950:PG0711|3end_hypothetical_protein_766281..766431_POSITIVE 324 439 392 54 5 NC_002950:PG0645|3end_hypothetical_protein_696883..697033_NEGATIVE 320 255 214 124 76 NC_002950:PG1356|3end_hypothetical_protein_1435361..1435511_NEGATIVE 316 59 14 149 99 NC_002950:PG0526|3end_putative_inner_membrane_protein_translocase_component_YidC_572709..572859_POSITIVE 311 55 11 110 52 NC_002950:PG1225|3end_ABC_transporter,_ATP-binding_protein_1303336..1303486_POSITIVE 310 537 491 74 26 NC_002950:PG1711|3end_alpha-1,2-mannosidase_family_protein_1796652..1796802_NEGATIVE 310 127 90 48 3 NC_002950:PG0675|3end_indolepyruvate_ferredoxin_oxidoreductase,_alpha_subunit_724829..724979_NEGATIVE 308 60 11 144 98 NC_002950:PG2067|3end_pyridoxal_phosphate_biosynthetic_protein_PdxA_2164392..2164542_POSITIVE 308 127 87 59 8 NC_002950:PG0302|3end_hypothetical_protein_338721..338871_POSITIVE 306 379 331 85 31 NC_002950:PG1508|3end_hypothetical_protein_1586688..1586838_POSITIVE 304 72 35 118 75 NC_002950:PG1978|3end_hypothetical_protein_2066723..2066873_NEGATIVE 301 140 91 68 20 NC_002950:PG1561|3end_dTDP-4-dehydrorhamnose_reductase_1640138..1640288_NEGATIVE 298 67 24 81 41 NC_002950:PG2206|3end_ABC_transporter,_ATP-binding_protein_2317250..2317400_NEGATIVE 297 80 39 52 1 NC_002950:PG0912|3end_polysaccharide_transport_protein,_putative_973791..973941_NEGATIVE 296 52 12 97 57 NC_002950:PG1113|3end_integrase_1185523..1185673_NEGATIVE 295 59 15 141 94 NC_002950:PG1002|3end_hypothetical_protein_1059237..1059387_POSITIVE 295 474 434 95 59 NC_002950:PG0498|3end_S-ribosylhomocysteinase_538527..538677_POSITIVE