Origin IGS: gaacagaatccatcaaaacgattattttccgaccaatacctttcgaagaatttgacggatttatcctcgataaatctacgtgtgttcgatgtaagcgatacggtgccgattctcataagagccgccttatcgatcaagctcttgttggggcattgactataaccgatcagaaaatgaaagggaaaaagtttgaagtctcatcggatgtcgaagcctctcgaagctgaaatctttcaactgagaaatgaaatatgctgataaacagcatattgcatatttttcctggattgaatccgcattgttttatagccgttcggaacatatgccgaaggggggtcgagctacgccctacagcgactcgggctacgccgtagagcgtaccgagctgcgctctacggctcttcgagctacgctgtagggctcaccgcgccgggccctacggctcagctcggccacctctacggctcacggagcggaactctacggctcggctcgctacgctgtagggcgtacctcgccgagctctacagcgtagctcgaagagccgtacgggatagctcgtcatcctctacggagtaccgccatctgccctgtggtatagcccatctccctatacggactgcaacattcggtcaaaagcaatccgaatttcaatgttggttcgatccaggcagaagcaggattgccccctatacaattgcctgaacagaacaacctataacttccaaaatattagtgcgttaaccgctaatcttggaacgaatacattggcgttttcttacgccgaactgacgttaaatctataaatcgggtctttcccgtttgtttatatttgtatctcattatcacctgacagcataatcgctccgaatacaatactcagaaaatcggaacagacaatcaaaaaacctga .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 tcaggttttttgattgtctgttccgattttctgagtattgtattcggagcgattatgctgtcaggtgataatgagatacaaatataaacaaacgggaaagacccgatttatagatttaacgtcagttcggcgtaagaaaacgccaatgtattcgttccaagattagcggttaacgcactaatattttggaagttataggttgttctgttcaggcaattgtatagggggcaatcctgcttctgcctggatcgaaccaacattgaaattcggattgcttttgaccgaatgttgcagtccgtatagggagatgggctataccacagggcagatggcggtactccgtagaggatgacgagctatcccgtacggctcttcgagctacgctgtagagctcggcgaggtacgccctacagcgtagcgagccgagccgtagagttccgctccgtgagccgtagaggtggccgagctgagccgtagggcccggcgcggtgagccctacagcgtagctcgaagagccgtagagcgcagctcggtacgctctacggcgtagcccgagtcgctgtagggcgtagctcgaccccccttcggcatatgttccgaacggctataaaacaatgcggattcaatccaggaaaaatatgcaatatgctgtttatcagcatatttcatttctcagttgaaagatttcagcttcgagaggcttcgacatccgatgagacttcaaactttttccctttcattttctgatcggttatagtcaatgccccaacaagagcttgatcgataaggcggctcttatgagaatcggcaccgtatcgcttacatcgaacacacgtagatttatcgaggataaatccgtcaaattcttcgaaaggtattggtcggaaaataatcgttttgatggattctgttc Mask Tandem Repeat Region ================================================ gaacagaatccatcaaaacgattattttccgaccaatacctttcgaagaatttgacggatttatcctcgataaatctacgtgtgttcgatgtaagcgatacggtgccgattctcataagagccgccttatcgatcaagctcttgttggggcattgactataaccgatcagaaaatgaaagggaaaaagtttgaagtctcatcggatgtcgaagcctctcgaagctgaaatctttcaactgagaaatgaaatatgctgataaacagcatattgcatatttttcctggattgaatccgcattgttttatagccgttcggaacatatgccgaaggggggtcgagctacgccctacagcgactcgggctacgccgtagagcgtacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaccgcgccgggccctacggctcagctcggccacctctacggctcacggagcggaactctacggctcggctcgctacgctgtagggcgtacctcgccgagctctacagcgtagctcgaagagccgtacgggatagctcgtcatcctctacggagtaccgccatctgccctgtggtatagcccatctccctatacggactgcaacattcggtcaaaagcaatccgaatttcaatgttggttcgatccaggcagaagcaggattgccccctatacaattgcctgaacagaacaacctataacttccaaaatattagtgcgttaaccgctaatcttggaacgaatacattggcgttttcttacgccgaactgacgttaaatctataaatcgggtctttcccgtttgtttatatttgtatctcattatcacctgacagcataatcgctccgaatacaatactcagaaaatcggaacagacaatcaaaaaacctga Find is-nt database================================================ Query_seq: PG1190:PG1195|PG1190:PG1195:glycerate dehydrogenase:8-amino-7-oxononanoate synthase:->->:1273206..1274118 913 gaacagaatccatcaaaacgattattttccgaccaatacctttcgaagaatttgacggatttatcctcgataaatctacgtgtgttcgatgtaagcgatacggtgccgattctcataagagccgccttatcgatcaagctcttgttggggcattgactataaccgatcagaaaatgaaagggaaaaagtttgaagtctcatcggatgtcgaagcctctcgaagctgaaatctttcaactgagaaatgaaatatgctgataaacagcatattgcatatttttcctggattgaatccgcattgttttatagccgttcggaacatatgccgaaggggggtcgagctacgccctacagcgactcgggctacgccgtagagcgtaccgagctgcgctctacggctcttcgagctacgctgtagggctcaccgcgccgggccctacggctcagctcggccacctctacggctcacggagcggaactctacggctcggctcgctacgctgtagggcgtacctcgccgagctctacagcgtagctcgaagagccgtacgggatagctcgtcatcctctacggagtaccgccatctgccctgtggtatagcccatctccctatacggactgcaacattcggtcaaaagcaatccgaatttcaatgttggttcgatccaggcagaagcaggattgccccctatacaattgcctgaacagaacaacctataacttccaaaatattagtgcgttaaccgctaatcttggaacgaatacattggcgttttcttacgccgaactgacgttaaatctataaatcgggtctttcccgtttgtttatatttgtatctcattatcacctgacagcataatcgctccgaatacaatactcagaaaatcggaacagacaatcaaaaaacctga Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PG1190:PG1195|PG1190:PG1195:glycerate dehydrogenase:8-amino-7-oxononanoate synthase:->->:1273206..1274118 913 gaacagaatccatcaaaacgattattttccgaccaatacctttcgaagaatttgacggatttatcctcgataaatctacgtgtgttcgatgtaagcgatacggtgccgattctcataagagccgccttatcgatcaagctcttgttggggcattgactataaccgatcagaaaatgaaagggaaaaagtttgaagtctcatcggatgtcgaagcctctcgaagctgaaatctttcaactgagaaatgaaatatgctgataaacagcatattgcatatttttcctggattgaatccgcattgttttatagccgttcggaacatatgccgaaggggggtcgagctacgccctacagcgactcgggctacgccgtagagcgtaccgagctgcgctctacggctcttcgagctacgctgtagggctcaccgcgccgggccctacggctcagctcggccacctctacggctcacggagcggaactctacggctcggctcgctacgctgtagggcgtacctcgccgagctctacagcgtagctcgaagagccgtacgggatagctcgtcatcctctacggagtaccgccatctgccctgtggtatagcccatctccctatacggactgcaacattcggtcaaaagcaatccgaatttcaatgttggttcgatccaggcagaagcaggattgccccctatacaattgcctgaacagaacaacctataacttccaaaatattagtgcgttaaccgctaatcttggaacgaatacattggcgttttcttacgccgaactgacgttaaatctataaatcgggtctttcccgtttgtttatatttgtatctcattatcacctgacagcataatcgctccgaatacaatactcagaaaatcggaacagacaatcaaaaaacctga Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PG1190:PG1195|PG1190:PG1195:glycerate dehydrogenase:8-amino-7-oxononanoate synthase:->->:1273206..1274118 913 gaacagaatccatcaaaacgattattttccgaccaatacctttcgaagaatttgacggatttatcctcgataaatctacgtgtgttcgatgtaagcgatacggtgccgattctcataagagccgccttatcgatcaagctcttgttggggcattgactataaccgatcagaaaatgaaagggaaaaagtttgaagtctcatcggatgtcgaagcctctcgaagctgaaatctttcaactgagaaatgaaatatgctgataaacagcatattgcatatttttcctggattgaatccgcattgttttatagccgttcggaacatatgccgaaggggggtcgagctacgccctacagcgactcgggctacgccgtagagcgtaccgagctgcgctctacggctcttcgagctacgctgtagggctcaccgcgccgggccctacggctcagctcggccacctctacggctcacggagcggaactctacggctcggctcgctacgctgtagggcgtacctcgccgagctctacagcgtagctcgaagagccgtacgggatagctcgtcatcctctacggagtaccgccatctgccctgtggtatagcccatctccctatacggactgcaacattcggtcaaaagcaatccgaatttcaatgttggttcgatccaggcagaagcaggattgccccctatacaattgcctgaacagaacaacctataacttccaaaatattagtgcgttaaccgctaatcttggaacgaatacattggcgttttcttacgccgaactgacgttaaatctataaatcgggtctttcccgtttgtttatatttgtatctcattatcacctgacagcataatcgctccgaatacaatactcagaaaatcggaacagacaatcaaaaaacctga Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 gaacagaatccatcaaaacgattattttccgaccaatacctttcgaagaatttgacggatttatcctcgataaatctacgtgtgttcgatgtaagcgatacggtgccgattctcataagagccgccttatcgatcaagctcttgttggggcattgactataaccgatcagaaaatgaaagggaaaaagtttgaagtctcatcggatgtcgaagcctctcgaagctgaaatctttcaactgagaaatgaaatatgctgataaacagcatattgcatatttttcctggattgaatccgcattgttttatagccgttcggaacatatgccgaaggggggtcgagctacgccctacagcgactcgggctacgccgtagagcgtaccgagctgcgctctacggctcttcgagctacgctgtagggctcaccgcgccgggccctacggctcagctcggccacctctacggctcacggagcggaactctacggctcggctcgctacgctgtagggcgtacctcgccgagctctacagcgtagctcgaagagccgtacgggatagctcgtcatcctctacggagtaccgccatctgccctgtggtatagcccatctccctatacggactgcaacattcggtcaaaagcaatccgaatttcaatgttggttcgatccaggcagaagcaggattgccccctatacaattgcctgaacagaacaacctataacttccaaaatattagtgcgttaaccgctaatcttggaacgaatacattggcgttttcttacgccgaactgacgttaaatctataaatcgggtctttcccgtttgtttatatttgtatctcattatcacctgacagcataatcgctccgaatacaatactcagaaaatcggaacagacaatcaaaaaacctga Predict ORF larger than 30AA ================================================ Protein_Len: 34 Strand: + Start: 52 End: 153 ................................................... M T D L S S I N L R V F D V S D T V P I L I R A A L S I K L L L G H ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 60 Strand: + Start: 12 End: 224 ........... M K T I I F R P I P F E E F D G F I L D K S T C V R C K R Y G A D S H K S R L I D Q A L V G A L T I T D Q K M K G K K F ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 40 Strand: + Start: 252 End: 371 ........................................................................................................................................................................................................................................................... M L I N S I L H I F P G L N P H C F I A V R N I C R R G V E L R P T A T R A T P .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 57 Strand: + Start: 245 End: 415 .................................................................................................................................................................................................................................................... M K Y A D K Q H I A Y F S W I E S A L F Y S R S E H M P K G G R A T P Y S D S G Y A V E R T E L R S T A L R A T L .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 39 Strand: + Start: 586 End: 702 ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M P C G I A H L P I R T A T F G Q K Q S E F Q C W F D P G R S R I A P Y T I A ................................................................................................................................................................................................................... Protein_Len: 38 Strand: + Start: 605 End: 718 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ M S L Y G L Q H S V K S N P N F N V G S I Q A E A G L P P I Q L P E Q N N L ................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 564 End: 803 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M L Y G V P P S A L W Y S P S P Y T D C N I R S K A I R I S M L V R S R Q K Q D C P L Y N C L N R T T Y N F Q N I S A L .............................................................................................................. Protein_Len: 35 Strand: + Start: 807 End: 911 ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M G S F P F V Y I C I S L S P D S I I A P N T I L R K S E Q T I K K P .. Protein_Len: 42 Strand: - Start: 751 End: 876 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. D Q F S Y M P T K K R R V S T L D I F R T K G T Q K Y K Y R M I V Q C C L R E S Y M ..................................... Protein_Len: 32 Strand: - Start: 614 End: 709 ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... V S Q L M R D F A I R I E I N T R D L C F C S Q G R Y L Q R F M ............................................................................................................................................................................................................ Protein_Len: 50 Strand: - Start: 565 End: 714 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... G R R L V A M Q G T T Y G M E R Y P S C C E T L L L G F K L T P E I W A S A P N G G I C N G S C F M ....................................................................................................................................................................................................... Protein_Len: 42 Strand: - Start: 440 End: 565 ....................................................................................................................................................................................................................................................................................................................................................................................................................................................... P E A R G G R R S V S R F E V A R S A V S Y P T G R R A R C R L E F L R V P Y S T M ............................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 30 Strand: - Start: 367 End: 456 .............................................................................................................................................................................................................................................................................................................................................................................. A T S R V S S R E V A R R A V S Y P E G R R A R R S L E A M ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 51 Strand: - Start: 170 End: 322 ......................................................................................................................................................................... F I F P F F N S T E D S T S A E R L Q F R E V S F H F I S I F L M N C I K G P N F G C Q K I A T R F M ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 43 Strand: - Start: 160 End: 288 ............................................................................................................................................................... L R D S F S L S F T Q L R M P H R L R E F S F D K L Q S I F Y A S L C C I A Y K E Q M ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 56 Strand: - Start: 3 End: 170 .. C F G D F R N N E S W Y R E F F K V S K D E I F R R T N S T L S V T G I R M L A A K D I L S K N P C Q S Y G I M ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... gaacagaatccatcaaaacgattattttccgaccaatacctttcgaagaatttgacggatttatcctcgataaatctacgtgtgttcgatgtaagcgatacggtgccgattctcataagagccgccttatcgatcaagctcttgttggggcattgactataaccgatcagaaaatgaaagggaaaaagtttgaagtctcatcggatgtcgaagcctctcgaagctgaaatctttcaactgagaaatgaaatatgctgataaacagcatattgcatatttttcctggattgaatccgcattgttttatagccgttcggaacatatgccgaaggggggtcgagctacgccctacagcgactcgggctacgccgtagagcgtaccgagctgcgctctacggctcttcgagctacgctgtagggctcaccgcgccgggccctacggctcagctcggccacctctacggctcacggagcggaactctacggctcggctcgctacgctgtagggcgtacctcgccgagctctacagcgtagctcgaagagccgtacgggatagctcgtcatcctctacggagtaccgccatctgccctgtggtatagcccatctccctatacggactgcaacattcggtcaaaagcaatccgaatttcaatgttggttcgatccaggcagaagcaggattgccccctatacaattgcctgaacagaacaacctataacttccaaaatattagtgcgttaaccgctaatcttggaacgaatacattggcgttttcttacgccgaactgacgttaaatctataaatcgggtctttcccgtttgtttatatttgtatctcattatcacctgacagcataatcgctccgaatacaatactcagaaaatcggaacagacaatcaaaaaacctga Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ gaacagaatccatcaaaacgattattttccgaccaatacctttcgaagaatttgacggatttatcctcgataaatctacgtgtgttcgatgtaagcgatacggtgccgattctcataagagccgccttatcgatcaagctcttgttggggcattgactataaccgatcagaaaatgaaagggaaaaagtttgaagtctcatcggatgtcgaagcctctcgaagctgaaatctttcaactgagaaatgaaatatgctgataaacagcatattgcatatttttcctggattgaatccgcattgttttatagccgttcggaacatatgccgaaggggggtcgagctacgccctacagcgactcgggctacgccgtagagcgtaccgagctgcgctctacggctcttcgagctacgctgtagggctcaccgcgccgggccctacggctcagctcggccacctctacggctcacggagcggaactctacggctcggctcgctacgctgtagggcgtacctcgccgagctctacagcgtagctcgaagagccgtacgggatagctcgtcatcctctacggagtaccgccatctgccctgtggtatagcccatctccctatacggactgcaacattcggtcaaaagcaatccgaatttcaatgttggttcgatccaggcagaagcaggattgccccctatacaattgcctgaacagaacaacctataacttccaaaatattagtgcgttaaccgctaatcttggaacgaatacattggcgttttcttacgccgaactgacgttaaatctataaatcgggtctttcccgtttgtttatatttgtatctcattatcacctgacagcataatcgctccgaatacaatactcagaaaatcggaacagacaatcaaaaaacctga Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 80 HP_score: -6.4 Tail_Score: -4.77157 Start: 244 End: 276 Full_Region: ATCTTTCAACTGAGA AATGAAATATGCTG ATAAA CAGCATATTGCATA TTTTTCCTGGATTGA ...................................................................................................................................................................................................................................................AATGAAATATGCTGATAAACAGCATATTGCATA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: + Conf: 78 HP_score: -9.0 Tail_Score: -3.9993 Start: 246 End: 274 Full_Region: CTTTCAACTGAGAAA TGAAATATGCTG ATAAA CAGCATATTGCA TATTTTTCCTGGATT .....................................................................................................................................................................................................................................................TGAAATATGCTGATAAACAGCATATTGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 78 HP_score: -9.0 Tail_Score: -3.97368 Start: 246 End: 274 Full_Region: aatccaggaaaaata tgcaatatgctg tttat cagcatatttca tttctcagttgaaag .....................................................................................................................................................................................................................................................tgcaatatgctgtttatcagcatatttca............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 73 HP_score: -7.5 Tail_Score: -4.15669 Start: 251 End: 269 Full_Region: aggaaaaatatgcaa tatgctg tttat cagcata tttcatttctcagtt ..........................................................................................................................................................................................................................................................tatgctgtttatcagcata.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 100 HP_score: -16.7 Tail_Score: -3.04263 Start: 368 End: 399 Full_Region: AGCGACTCGGGCTAC GCCGTAGAGCGTA CCGAGC TGCGCTCTACGGC TCTTCGAGCTACGCT ...............................................................................................................................................................................................................................................................................................................................................................................GCCGTAGAGCGTACCGAGCTGCGCTCTACGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: + Conf: 78 HP_score: -6.2 Tail_Score: -4.74787 Start: 809 End: 821 Full_Region: GTTAAATCTATAAAT CGGG TCTTT CCCG TTTGTTTATATTTGT ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGGTCTTTCCCG............................................................................................ Find igs database================================================ Query_seq: PG1190:PG1195|PG1190:PG1195:glycerate dehydrogenase:8-amino-7-oxononanoate synthase:->->:1273206..1274118 913 gaacagaatccatcaaaacgattattttccgaccaatacctttcgaagaatttgacggatttatcctcgataaatctacgtgtgttcgatgtaagcgatacggtgccgattctcataagagccgccttatcgatcaagctcttgttggggcattgactataaccgatcagaaaatgaaagggaaaaagtttgaagtctcatcggatgtcgaagcctctcgaagctgaaatctttcaactgagaaatgaaatatgctgataaacagcatattgcatatttttcctggattgaatccgcattgttttatagccgttcggaacatatgccgaaggggggtcgagctacgccctacagcgactcgggctacgccgtagagcgtaccgagctgcgctctacggctcttcgagctacgctgtagggctcaccgcgccgggccctacggctcagctcggccacctctacggctcacggagcggaactctacggctcggctcgctacgctgtagggcgtacctcgccgagctctacagcgtagctcgaagagccgtacgggatagctcgtcatcctctacggagtaccgccatctgccctgtggtatagcccatctccctatacggactgcaacattcggtcaaaagcaatccgaatttcaatgttggttcgatccaggcagaagcaggattgccccctatacaattgcctgaacagaacaacctataacttccaaaatattagtgcgttaaccgctaatcttggaacgaatacattggcgttttcttacgccgaactgacgttaaatctataaatcgggtctttcccgtttgtttatatttgtatctcattatcacctgacagcataatcgctccgaatacaatactcagaaaatcggaacagacaatcaaaaaacctga Intra-Species Hit: Count: 8 Min: 1 Max: 913 Len: 913 Subject: NC_002950_PG1190_PG1195|glycerate dehydrogenase:8-amino-7-oxononanoate synthase|POSITIVE:POSITIVE|[1273206,1274118]|913 HSP 1 e-value: 0.0 bit: 1810.0 Len: 913 Query Start:1 Query End:913 Subject Strand: POSITIVE Subject Start: 1 Subject End: 913 gaacagaatccatcaaaacgattattttccgaccaatacctttcgaagaatttgacggatttatcctcgataaatctacgtgtgttcgatgtaagcgatacggtgccgattctcataagagccgccttatcgatcaagctcttgttggggcattgactataaccgatcagaaaatgaaagggaaaaagtttgaagtctcatcggatgtcgaagcctctcgaagctgaaatctttcaactgagaaatgaaatatgctgataaacagcatattgcatatttttcctggattgaatccgcattgttttatagccgttcggaacatatgccgaaggggggtcgagctacgccctacagcgactcgggctacgccgtagagcgtaccgagctgcgctctacggctcttcgagctacgctgtagggctcaccgcgccgggccctacggctcagctcggccacctctacggctcacggagcggaactctacggctcggctcgctacgctgtagggcgtacctcgccgagctctacagcgtagctcgaagagccgtacgggatagctcgtcatcctctacggagtaccgccatctgccctgtggtatagcccatctccctatacggactgcaacattcggtcaaaagcaatccgaatttcaatgttggttcgatccaggcagaagcaggattgccccctatacaattgcctgaacagaacaacctataacttccaaaatattagtgcgttaaccgctaatcttggaacgaatacattggcgttttcttacgccgaactgacgttaaatctataaatcgggtctttcccgtttgtttatatttgtatctcattatcacctgacagcataatcgctccgaatacaatactcagaaaatcggaacagacaatcaaaaaacctga gaacagaatccatcaaaacgattattttccgaccaatacctttcgaagaatttgacggatttatcctcgataaatctacgtgtgttcgatgtaagcgatacggtgccgattctcataagagccgccttatcgatcaagctcttgttggggcattgactataaccgatcagaaaatgaaagggaaaaagtttgaagtctcatcggatgtcgaagcctctcgaagctgaaatctttcaactgagaaatgaaatatgctgataaacagcatattgcatatttttcctggattgaatccgcattgttttatagccgttcggaacatatgccgaaggggggtcgagctacgccctacagcgactcgggctacgccgtagagcgtaccgagctgcgctctacggctcttcgagctacgctgtagggctcaccgcgccgggccctacggctcagctcggccacctctacggctcacggagcggaactctacggctcggctcgctacgctgtagggcgtacctcgccgagctctacagcgtagctcgaagagccgtacgggatagctcgtcatcctctacggagtaccgccatctgccctgtggtatagcccatctccctatacggactgcaacattcggtcaaaagcaatccgaatttcaatgttggttcgatccaggcagaagcaggattgccccctatacaattgcctgaacagaacaacctataacttccaaaatattagtgcgttaaccgctaatcttggaacgaatacattggcgttttcttacgccgaactgacgttaaatctataaatcgggtctttcccgtttgtttatatttgtatctcattatcacctgacagcataatcgctccgaatacaatactcagaaaatcggaacagacaatcaaaaaacctga Subject: NC_002950_PG0890_PG0893|alkaline phosphatase, putative:hydroxylamine reductase|POSITIVE:NEGATIVE|[953164,954290]|1127 HSP 1 e-value: 0.0 bit: 969.0 Len: 660 Query Start:139 Query End:798 Subject Strand: NEGATIVE Subject Start: 188 Subject End: 848 ..........................................................................................................................................ctcttgttggggcattgactataaccga-tcagaaaatgaaagggaaaaagtttgaagtctcatcggatgtcgaagcctctcgaagctgaaatctttcaactgagaaatgaaatatgctgataaacagcatattgcatatttttcctggattgaatccgcattgttttatagccgttcggaacatatgccgaaggggggtcgagctacgccctacagcgactcgggctacgccgtagagcgtaccgagctgcgctctacggctcttcgagctacgctgtagggctcaccgcgccgggccctacggctcagctcggccacctctacggctcacggagcggaactctacggctcggctcgctacgctgtagggcgtacctcgccgagctctacagcgtagctcgaagagccgtacgggatagctcgtcatcctctacggagtaccgccatctgccctgtggtatagcccatctccctatacggactgcaacattcggtcaaaagcaatccgaatttcaatgttggttcgatccaggcagaagcaggattgccccctatacaattgcctgaacagaacaacctataacttccaaaatattagtgcgttaaccgctaatcttggaacgaatacattggcgttttcttacgccgaactgacgttaa................................................................................................................... ..........................................................................................................................................ctcttgttgggatattgactataatcgaatcagaaaatgaaagggaaaaagtttgacgtctcatcggatgtcgaagcctctcgaagctgaaatttctcaaccgagaaatgaaatacgctgacaaacagcatattgcatattttcttcagatcgaatccgcattgttttatagccattcggaacatacgccgaaagggggtcgagctacgccctacagcgactcgggctacgccgtagagcgtaccgagctgcgctctacggctcttcaagctacgctgtagggctcaccgcgccgggccctacggctcagctcggccacatctacggctcacggagcggaactctacggctcggctcgctacgctgtagagcgtacctcgccgagctctacagcgtagctcgaagagccgtatgggatagcccgttatcctctacggaataccgccatctgccttgtggtatagcccatcttccggtgcggactgcaacattcggtcaaaagcaatccgaatttcaatgttggtccgatccgggcagaagcaggattgccccctatacaattgcctgaacggaacaacctataactcccaagatcttagtgtgtaacccgctaatcggggaacgaatacattggcgttttcttacgccgaactgacgttaa................................................................................................................... Subject: NC_002950_PG1297_PG1300|ribosomal protein S1:hypothetical protein|POSITIVE:NEGATIVE|[1377771,1378619]|849 HSP 1 e-value: 0.0 bit: 890.0 Len: 611 Query Start:188 Query End:798 Subject Strand: NEGATIVE Subject Start: 123 Subject End: 735 ...........................................................................................................................................................................................gtttgaagtctcatcggatgtcgaagcctctcgaagctgaaatctttcaactgagaaatgaaatatgctgataaacagcatattgcatatttttcctg-gattgaatccgcattgttttatagccgttcggaacatatgccgaaggggggtcgagctacgccctacagcgactcgggctacgccgtagagcgtaccgagctgcgctctacggctcttcgagctacgctgtagggctcaccgcgccgggccctacggctcagctcggccacctctacggctcacggagcggaactctacggctcggctcgctacgctgtagggcgtacctcgccgagctctacagcgtagctcgaagagccgtacgggatagctcgtcatcctctacggagtaccgccatc-tgccctgtggtatagcccatctccctatacggactgcaacattcggtcaaaagcaatccgaatttcaatgttggttcgatccaggcagaagcaggattgccccctatacaattgcctgaacagaacaacctataacttccaaaatattagtgcgttaaccgctaatcttggaacgaatacattggcgttttcttacgccgaactgacgttaa................................................................................................................... ...........................................................................................................................................................................................gtttgacgtctcatcggatgtcggagcctctcgaagctgaaatctttgaactgagaagtgaaatacgctgacaaacagcatattgcatgtttttcttcagatcgaatcctcattgttttatagccgttcggaatatactccgaaggggggtcgagctacgccctacagcgactcgggctacgccgtagagcgtaccgagctgcgctctacggctcttcgagctacgctgtagggctcgctgcgccgggctctacggctcagctcggccacctctacggctcccggagcggaactctacggctcggctcgctacgctgtagggctcaccgcgccgggctctacagcgtagctcgaagagctgtacgggatagcccgttatcctctatggagtaccgccatcttgccctgtggtatagcccatctccctgtacggactgcaacattcggtcaaaagcaatccgaatttcaatgttggttcgatccaagcaaaagcaggattgccccctatacaattgcctgaacggaacaacctataactcccaagatcttagtgtgtaaaccgctaatcagggaacgaatacattggcgttttcttacgccgaactgacgttaa................................................................................................................... HSP 2 e-value: 9.0E-6 bit: 54.0 Len: 31 Query Start:519 Query End:549 Subject Strand: POSITIVE Subject Start: 498 Subject End: 528 ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cgagctctacagcgtagctcgaagagccgta............................................................................................................................................................................................................................................................................................................................................................................ ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cgagccctacagcgtagctcgaagagccgta............................................................................................................................................................................................................................................................................................................................................................................ Subject: NC_002950_PG1881_PG1884|hypothetical protein:alpha-L-fucosidase precursor, putative|POSITIVE:NEGATIVE|[1978107,1979057]|951 HSP 1 e-value: 0.0 bit: 763.0 Len: 526 Query Start:156 Query End:681 Subject Strand: NEGATIVE Subject Start: 302 Subject End: 829 ...........................................................................................................................................................actataaccgatcagaaaatgaaagggaaaaagtttgaagtctcatcggatgtcgaagcctctcgaagctgaaatctttcaactgagaaatgaaatatgctgataaacagcatattgcatatttttcctggattgaatccgcattgttttatagccgttcggaacatatgccgaaggggggtcgagctacgccctacagcgactcgggctacgccgtagagcgtaccgagctgcgctctacggctcttcgagctacgctgtagggctcaccgcgccgggccctacggctcagctcggccacctctacggctcacggagcggaactctacggctcggctcgctacgctgtagggcgtacctcgccgagctctacagcgtagctcgaagagccgtacgggatagctcgtcatcctctacggagtaccgccatctgccctgtggtatagcccatctccctatacggactgcaacattcggtc--aaaagcaatccgaatttcaatgttggttcgatccaggcagaagcagg........................................................................................................................................................................................................................................ ...........................................................................................................................................................actataaccgatcagaaaatgaaagggaaaaaatttgacgtctcatcggatgtcgaagtctcccgaagctgaaatctctcaaccgagaaatgaaatacgttgacaaacagcatattgcatgtttttcttggatcgaatccgcattgttttatagccgttcggaacatactccgaaagggggtcgagctacgccctacagcgactcgggctacgccgtagagcgtaccgagctgcgctctacggctcttcgagctacgctgtagggctcggcgcgccgggctctagggctcggctcggccacctctacagctcccggagcggaactctacggctcggctcgctacgctgtagggcgtacctcgctgagctctacagcgtagctcgaagagctgtacgggatagctcgtcatcccctacggagtacctccatgtgccctatggtatagcccatctttctgtacggactgtaacattcggtcaaaaaagcaatccgaatttcaatgttggttcgatccaagcagaagcagg........................................................................................................................................................................................................................................ HSP 2 e-value: 1.0E-7 bit: 60.0 Len: 34 Query Start:516 Query End:549 Subject Strand: POSITIVE Subject Start: 558 Subject End: 591 ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cgccgagctctacagcgtagctcgaagagccgta............................................................................................................................................................................................................................................................................................................................................................................ ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cgccgagccctacagcgtagctcgaagagccgta............................................................................................................................................................................................................................................................................................................................................................................ HSP 3 e-value: 2.0E-6 bit: 56.0 Len: 32 Query Start:766 Query End:797 Subject Strand: NEGATIVE Subject Start: 211 Subject End: 242 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cattggcgttttcttacgccgaactgacgtta.................................................................................................................... .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cattggcgttttcttacgtcgaactgacgtta.................................................................................................................... Subject: NC_002950_PG0237_PG0240|uracil-DNA glycosylase:hydrolase, haloacid dehalogenase-like family|POSITIVE:NEGATIVE|[275587,276484]|898 HSP 1 e-value: 1.0E-147 bit: 523.0 Len: 353 Query Start:437 Query End:789 Subject Strand: NEGATIVE Subject Start: 102 Subject End: 456 ....................................................................................................................................................................................................................................................................................................................................................................................................................................................ctacggctcagctcggccacctctacggctcacggagcggaactctacggctcggctcgctacgctgtagggcgtacctcgccgagctctacagcgtagctcgaagagccgtacgggatagctcgtcatcctctacggagtaccgccatctgccctgtggtatagcccatctccctatacggactgcaacattcggtc--aaaagcaatccgaatttcaatgttggttcgatccaggcagaagcaggattgccccctatacaattgcctgaacagaacaacctataacttccaaaatattagtgcgttaaccgctaatcttggaacgaatacattggcgttttcttacgccgaac............................................................................................................................ ....................................................................................................................................................................................................................................................................................................................................................................................................................................................ctacggctcagctcggccacctctacggctcccggagcggaactctacggctcggctcgctacgctgtagagcgtacctcgccgagctctacagcgtagctcgaagagctgtacgggatagcccgttatcctctacggtgtaccgccatctgccttgtggtatagcccatcttcctgtacggactgcaacattcggtcaaaaaagcaatccgaatttcaatgttggttcgatccgggcagaagcaggattgccccctatacaattgcctgaacggaataacctataactcccaagatcttagtgtgtaacccgctaatcggggaacgaatacattggcgttttcttacgccgaac............................................................................................................................ HSP 2 e-value: 1.0E-126 bit: 454.0 Len: 316 Query Start:86 Query End:401 Subject Strand: NEGATIVE Subject Start: 448 Subject End: 764 .....................................................................................tcgatgtaagcgatacggtgccgattctcataagagccgccttatcgatcaagctcttgttggggcattgactataaccga-tcagaaaatgaaagggaaaaagtttgaagtctcatcggatgtcgaagcctctcgaagctgaaatctttcaactgagaaatgaaatatgctgataaacagcatattgcatatttttcctggattgaatccgcattgttttatagccgttcggaacatatgccgaaggggggtcgagctacgccctacagcgactcgggctacgccgtagagcgtaccgagctgcgctctacggctc................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ .....................................................................................tcgatgtaagcgatatggtgtcgattctcatgagaaccgccttatcgatcaagctcttgttggggcattgactataaccgaatcagaaaatgaaagggaaaaagtttgacgtctcattggatgtcgaagcctctcgaagctgaaatctctcaaccgagaaatgaaatacgctgacaaacaggatattgcatattttcttcagatcgaatccgcattgttttatagccattcggaacatacgccgaaagggggtcgagctacgccctacagcgactcgggctacgccgtagagcgtaccgagctgcgctctacggctc................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Subject: NC_002950_PG1837_PG1840|hemagglutinin protein HagA:hypothetical protein|POSITIVE:POSITIVE|[1936795,1937241]|447 HSP 1 e-value: 1.0E-143 bit: 509.0 Len: 313 Query Start:296 Query End:608 Subject Strand: POSITIVE Subject Start: 107 Subject End: 419 .......................................................................................................................................................................................................................................................................................................gcattgttttatagccgttcggaacatatgccgaaggggggtcgagctacgccctacagcgactcgggctacgccgtagagcgtaccgagctgcgctctacggctcttcgagctacgctgtagggctcaccgcgccgggccctacggctcagctcggccacctctacggctcacggagcggaactctacggctcggctcgctacgctgtagggcgtacctcgccgagctctacagcgtagctcgaagagccgtacgggatagctcgtcatcctctacggagtaccgccatctgccctgtggtatagcccatct................................................................................................................................................................................................................................................................................................................. .......................................................................................................................................................................................................................................................................................................gcattgttttatagccgttcggaatatactccggaagggggtcgagctacgccctacagcgactcgggctacgccgtagagcgtaccgagctgcgctctacggctcttcgagctacgctgtagggctcaccgcgccaagctctacggctcagctcggccacctctacggctcccggagcggaactctacggctcggctcgctacgctgtagagcgtacctcgctgagctctacagcgtagctcgaagagccgtacgggatagcccgttatcctctacggagtaccaccatctgccctgtggtatagcccatct................................................................................................................................................................................................................................................................................................................. HSP 2 e-value: 9.0E-6 bit: 54.0 Len: 31 Query Start:394 Query End:424 Subject Strand: NEGATIVE Subject Start: 330 Subject End: 360 .........................................................................................................................................................................................................................................................................................................................................................................................................tacggctcttcgagctacgctgtagggctca......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .........................................................................................................................................................................................................................................................................................................................................................................................................tacggctcttcgagctacgctgtagagctca......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: NC_002950_PG1954_PG1956|NAD dependent epimerase/reductase-related protein:4-hydroxybutyrate CoA-transferase|POSITIVE:NEGATIVE|[2045673,2046304]|632 HSP 1 e-value: 1.0E-107 bit: 391.0 Len: 280 Query Start:139 Query End:418 Subject Strand: NEGATIVE Subject Start: 237 Subject End: 517 ..........................................................................................................................................ctcttgttggggcattgactataaccga-tcagaaaatgaaagggaaaaagtttgaagtctcatcggatgtcgaagcctctcgaagctgaaatctttcaactgagaaatgaaatatgctgataaacagcatattgcatatttttcctggattgaatccgcattgttttatagccgttcggaacatatgccgaaggggggtcgagctacgccctacagcgactcgggctacgccgtagagcgtaccgagctgcgctctacggctcttcgagctacgctgtag............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ..........................................................................................................................................ctcttgatgggatattgactataaccgaatcagaaaatgaaagggaaaaagtttgacgtctcatcggacgtcggagcctctcgaagctgaaacctctcaacagacaaatgaaatacattgacaaacagcatattgcatgtttttcttggatcgaatccgcattgttttatagccgttcggaacatacgccgaaagggggtcgagctacgccctacagcgactcgggctacgccgtagagcgtaccgagctgcgctctacggctcttcgagctacgctgtag............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 4.0E-51 bit: 204.0 Len: 135 Query Start:495 Query End:629 Subject Strand: NEGATIVE Subject Start: 114 Subject End: 248 ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gctacgctgtagggcgtacctcgccgagctctacagcgtagctcgaagagccgtacgggatagctcgtcatcctctacggagtaccgccatctgccctgtggtatagcccatctccctatacggactgcaacatt............................................................................................................................................................................................................................................................................................ ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gctacgctgtagagcgtacctcgccgagctctacagcgtagctcgaagagccgtacgggatagctcgtcatcctctatggtgtaccgccatctgccctatggtatagcccatctttctgtacggactgtaacatt............................................................................................................................................................................................................................................................................................ HSP 3 e-value: 2.0E-6 bit: 56.0 Len: 28 Query Start:522 Query End:549 Subject Strand: POSITIVE Subject Start: 234 Subject End: 261 .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gctctacagcgtagctcgaagagccgta............................................................................................................................................................................................................................................................................................................................................................................ .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gctctacagcgtagctcgaagagccgta............................................................................................................................................................................................................................................................................................................................................................................ Subject: NC_002950_PG1174_PG1175|thioesterase family protein:ABC transporter, ATP-binding protein, putative|NEGATIVE:NEGATIVE|[1253798,1254259]|462 HSP 1 e-value: 2.0E-25 bit: 119.0 Len: 115 Query Start:78 Query End:192 Subject Strand: NEGATIVE Subject Start: 343 Subject End: 458 .............................................................................acgtgtgttcgatgtaagcgatacggtgccgattctcataagagccgccttatcgatcaagctcttgttggggcattgactataaccg-atcagaaaatgaaagggaaaaagtttg................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. .............................................................................acgtgagttcgatgtaagcgatatggtgccgactctcataagatccgccatatcgatcaaacacttgttgggatattgactataaccgaattggaaaatgaaagggaataagtttg................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ GAACAGAAUCCAUCAAAACGAUUAUUUUCCGACCAAUACCUUUCGAAGAAUUUGACGGAUUUAUCCUCGAUAAAUCUACGUGUGUUCGAUGUAAGCGAUACGGUGCCGAUUCUCAUAAGAGCCGCCUUAUCGAUCAAGCUCUUGUUGGGGCAUUGACUAUAACCGAUCAGAAAAUGAAAGGGAAAAAGUUUGAAGUCUCAUCGGAUGUCGAAGCCUCUCGAAGCUGAAAUCUUUCAACUGAGAAAUGAAAUAUGCUGAUAAACAGCAUAUUGCAUAUUUUUCCUGGAUUGAAUCCGCAUUGUUUUAUAGCCGUUCGGAACAUAUGCCGAAGGGGGGUCGAGCUACGCCCUACAGCGACUCGGGCUACGCCGUAGAGCGUACCGAGCUGCGCUCUACGGCUCUUCGAGCUACGCUGUAGGGCUCACCGCGCCGGGCCCUACGGCUCAGCUCGGCCACCUCUACGGCUCACGGAGCGGAACUCUACGGCUCGGCUCGCUACGCUGUAGGGCGUACCUCGCCGAGCUCUACAGCGUAGCUCGAAGAGCCGUACGGGAUAGCUCGUCAUCCUCUACGGAGUACCGCCAUCUGCCCUGUGGUAUAGCCCAUCUCCCUAUACGGACUGCAACAUUCGGUCAAAAGCAAUCCGAAUUUCAAUGUUGGUUCGAUCCAGGCAGAAGCAGGAUUGCCCCCUAUACAAUUGCCUGAACAGAACAACCUAUAACUUCCAAAAUAUUAGUGCGUUAACCGCUAAUCUUGGAACGAAUACAUUGGCGUUUUCUUACGCCGAACUGACGUUAAAUCUAUAAAUCGGGUCUUUCCCGUUUGUUUAUAUUUGUAUCUCAUUAUCACCUGACAGCAUAAUCGCUCCGAAUACAAUACUCAGAAAAUCGGAACAGACAAUCAAAAAACCUGA ...(((............(((((......(((..........))).(((.(((((((((((((((...))))))))...(((((((((.(((...(((((.((((....((((....)))).)))).))))).(((.((..((((.((((((....((....((..(((.....)))..)).....((((.((((.....((((...((((......))))..))))...)))).)))).....(((.(((((((((.....))))))))).))).((((.(((((((((((((.((((((.....(((((((((((........))))((((((((.(.((((..((..((((.(.....((((((.((((((((.((..(((((((..(((((((((((((((((((((((((((((((((..((.((((((((.((.((.((.((((((((........))))....)))).)).)).)).)))))))).)).((((((....)))))).......)))))))))))))))))))))))))))))).))).)))))))..)).)))))))).)))..))).....).))))))..))))).))))))))..)))).)))....((((((...........))))))..)))))).))))))))))))).))))..))...))))))....))))..)).))).....)))..........(((((...(((((((.(....)))))))).))))).))))))))).(((((......))))).......))))))))))...))))).((((((((.((((........((((((.((....((....)).(((......)))..))))))))........)))).)))).))))...........))). (-329.59) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UCAGGUUUUUUGAUUGUCUGUUCCGAUUUUCUGAGUAUUGUAUUCGGAGCGAUUAUGCUGUCAGGUGAUAAUGAGAUACAAAUAUAAACAAACGGGAAAGACCCGAUUUAUAGAUUUAACGUCAGUUCGGCGUAAGAAAACGCCAAUGUAUUCGUUCCAAGAUUAGCGGUUAACGCACUAAUAUUUUGGAAGUUAUAGGUUGUUCUGUUCAGGCAAUUGUAUAGGGGGCAAUCCUGCUUCUGCCUGGAUCGAACCAACAUUGAAAUUCGGAUUGCUUUUGACCGAAUGUUGCAGUCCGUAUAGGGAGAUGGGCUAUACCACAGGGCAGAUGGCGGUACUCCGUAGAGGAUGACGAGCUAUCCCGUACGGCUCUUCGAGCUACGCUGUAGAGCUCGGCGAGGUACGCCCUACAGCGUAGCGAGCCGAGCCGUAGAGUUCCGCUCCGUGAGCCGUAGAGGUGGCCGAGCUGAGCCGUAGGGCCCGGCGCGGUGAGCCCUACAGCGUAGCUCGAAGAGCCGUAGAGCGCAGCUCGGUACGCUCUACGGCGUAGCCCGAGUCGCUGUAGGGCGUAGCUCGACCCCCCUUCGGCAUAUGUUCCGAACGGCUAUAAAACAAUGCGGAUUCAAUCCAGGAAAAAUAUGCAAUAUGCUGUUUAUCAGCAUAUUUCAUUUCUCAGUUGAAAGAUUUCAGCUUCGAGAGGCUUCGACAUCCGAUGAGACUUCAAACUUUUUCCCUUUCAUUUUCUGAUCGGUUAUAGUCAAUGCCCCAACAAGAGCUUGAUCGAUAAGGCGGCUCUUAUGAGAAUCGGCACCGUAUCGCUUACAUCGAACACACGUAGAUUUAUCGAGGAUAAAUCCGUCAAAUUCUUCGAAAGGUAUUGGUCGGAAAAUAAUCGUUUUGAUGGAUUCUGUUC .(((..((((((((.(((((((((((....(........)...))))))).....((.(((..((((.(((.(.(((((...((((((....((((.....)))).))))))........(((.((((..(((((((...((((.((.(((...(((((((((..(((.....)))......)))))))))...))).)).....((.((((((..((((....((((((.....((((((.(((((((.(((.(..(((((.....((((((((.(((....)))....))))))))....(((.(.((((((((.(((((((((...(((.(.(((.((((((((.....((((((...(..(((((((((((((((((((((((((.(((((.((.(.(((((......))))).)..((((.(((.((..((((.((((.((..(((.....))).)).)))).))))..)).))).)))).)).))))).)))))))))))))))))))))))))..)...)))))).....)))))))).))).)))).))).)))).))..)))))))).))))(((((((........))))).))........)))))..).))).)))))))......(((.(((((((((.....))))))))).))).....(((((((....)))))))...))))))...(((..(((((.(((........................))).))))).....)))..)))))).))))..)))))).))....))))..))))))).)))).)))...))))).))))))))..)))))...))))..))))))))..(((((((((((.....(((....((((........)))).))).))))))))))))))... (-344.36) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 747 440 391 225 175 NC_002950:PG1840|5end_hypothetical_protein_1937102..1937332_POSITIVE 528 378 331 107 48 NC_002950:PG1006|5end_hypothetical_protein_1066478..1066708_NEGATIVE 524 460 411 175 124 NC_002950:PG2199|5end_ABC_transporter,_ATP-binding_protein,_putative_2306723..2306953_NEGATIVE 514 526 483 208 155 NC_002950:PG0215|5end_hypothetical_protein_251460..251690_POSITIVE 503 500 451 60 1 NC_002950:PG0223|5end_exonuclease_257610..257840_NEGATIVE 498 510 462 211 145 NC_002950:PG2107|5end_thiamine_biosynthesis_protein_ThiH_2216658..2216888_NEGATIVE 493 460 419 77 27 NC_002950:PG0606|5end_hypothetical_protein_662558..662788_NEGATIVE 493 460 419 229 179 NC_002950:PG0605|5end_hypothetical_protein_662406..662636_NEGATIVE 487 386 341 72 14 NC_002950:PG1343|5end_lipoate-protein_ligase_B_1423628..1423858_POSITIVE 486 500 451 178 124 NC_002950:PG1850|5end_hypothetical_protein_1949957..1950187_NEGATIVE 485 466 421 171 120 NC_002950:PG1966|5end_hypothetical_protein_2056924..2057154_NEGATIVE 473 470 421 230 163 NC_002950:PG1769|5end_hypothetical_protein_1856607..1856837_POSITIVE 467 510 462 78 31 NC_002950:PG2038|5end_N-acetylmuramoyl-L-alanine_amidase,_putative_2138207..2138437_NEGATIVE 467 500 451 50 2 NC_002950:PG0129|5end_mannosyltransferase_150585..150815_POSITIVE 466 465 423 174 125 NC_002950:PG0999|5end_hypothetical_protein_1057026..1057256_POSITIVE 466 465 423 77 28 NC_002950:PG0998|5end_hypothetical_protein_1056929..1057159_POSITIVE 465 430 381 70 25 NC_002950:PG0593|5end_htrA_protein_650362..650592_POSITIVE 465 430 382 104 58 NC_002950:PG0374|5end_hypothetical_protein_405564..405794_NEGATIVE 459 490 442 156 93 NC_002950:PG0809|5end_hypothetical_protein_872014..872244_NEGATIVE 455 399 354 49 7 NC_002950:PG1992|5end_glucose-inhibited_division_protein_A_2081410..2081640_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 743 426 382 70 17 NC_002950:PG0261|3end_ISPg3,_transposase_293862..294012_NEGATIVE 528 378 331 67 8 NC_002950:PG1007|3end_transcriptional_regulator,_GntR_family_1066518..1066668_NEGATIVE 481 528 483 128 87 NC_002950:PG1675|3end_hypothetical_protein_1760360..1760510_POSITIVE 466 465 423 80 31 NC_002950:PG0997|3end_transcriptional_regulator,_putative_1057012..1057162_POSITIVE 456 438 391 62 7 NC_002950:PG1133|3end_hypothetical_protein_1214103..1214253_POSITIVE 453 390 345 151 86 NC_002950:PG2065|3end_conserved_hypothetical_protein_TIGR00048_2162105..2162255_POSITIVE 449 499 451 61 11 NC_002950:PG0803|3end_glucosamine-6-phosphate_deaminase_859727..859877_NEGATIVE 449 390 343 78 31 NC_002950:PG0534|3end_hypothetical_protein_585805..585955_POSITIVE 449 457 411 144 99 NC_002950:PG0361|3end_hypothetical_protein_395481..395631_POSITIVE 444 470 421 55 6 NC_002950:PG0715|3end_transporter_768676..768826_NEGATIVE 442 470 421 61 16 NC_002950:PG0605|3end_hypothetical_protein_661165..661315_NEGATIVE 438 409 362 147 89 NC_002950:PG2101|3end_hypothetical_protein_2210278..2210428_NEGATIVE 436 478 431 142 98 NC_002950:PG1625|3end_hypothetical_protein_1708718..1708868_POSITIVE 434 398 352 107 51 NC_002950:PG2094|3end_hypothetical_protein_2193321..2193471_NEGATIVE 434 400 354 75 15 NC_002950:PG0459|3end_ISPg5,_transposase_Orf1_501517..501667_NEGATIVE 425 446 405 146 108 NC_002950:PG0214|3end_RNA_polymerase_sigma-70_factor,_ECF_subfamily_251543..251693_POSITIVE 423 400 352 61 2 NC_002950:PG1247|3end_3-dehydroquinate_synthase_1325585..1325735_POSITIVE 422 430 382 118 66 NC_002950:PG2099|3end_ATP-dependent_RNA_helicase,_DEAD/DEAH_box_family_2206649..2206799_NEGATIVE 421 360 313 77 35 NC_002950:PG1964|3end_bacterial_sugar_transferase_2054396..2054546_POSITIVE 421 420 378 85 43 NC_002950:PG0211|3end_cobalamin_biosynthesis_protein_CbiG/precorrin-4_C11-methyltransferase_245966..246116_NEGATIVE