Origin IGS: aagtacgcaatagcagccggatagtatctgttagaaaacggtttattcacgaatgtgagttcgacccaagagattgggaaagtgaagacaatatagctctcattctatacttatggaacttttcgccaaaaccacaagtggaaaattctttttccactggtggaaacaaaactttccactggtggaaagatagctttccacttgtggaaattcggcgtgtaccaaatagtcgcctgacacacaataagaagaataaacaaaagtgcctgctcattgtgcaaaggtcccattaattcgtacttgtttgataaccgaacgtagcaatcgttaggtttatgacggcaaacttattccctttcattttccaattcggttatagtcaatatcccaacaagtgtttgatcgatatggcggatcttatgagagtcggcaccatatcgcttacatcgaactcacgtttcc .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 ggaaacgtgagttcgatgtaagcgatatggtgccgactctcataagatccgccatatcgatcaaacacttgttgggatattgactataaccgaattggaaaatgaaagggaataagtttgccgtcataaacctaacgattgctacgttcggttatcaaacaagtacgaattaatgggacctttgcacaatgagcaggcacttttgtttattcttcttattgtgtgtcaggcgactatttggtacacgccgaatttccacaagtggaaagctatctttccaccagtggaaagttttgtttccaccagtggaaaaagaattttccacttgtggttttggcgaaaagttccataagtatagaatgagagctatattgtcttcactttcccaatctcttgggtcgaactcacattcgtgaataaaccgttttctaacagatactatccggctgctattgcgtactt Mask Tandem Repeat Region ================================================ aagtacgcaatagcagccggatagtatctgttagaaaacggtttattcacgaatgtgagttcgacccaagagattgggaaagtgaagacaatatagctctcattctatacttatggaacttttcgccaaaaccacaagtggaaaattcttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttcggcgtgtaccaaatagtcgcctgacacacaataagaagaataaacaaaagtgcctgctcattgtgcaaaggtcccattaattcgtacttgtttgataaccgaacgtagcaatcgttaggtttatgacggcaaacttattccctttcattttccaattcggttatagtcaatatcccaacaagtgtttgatcgatatggcggatcttatgagagtcggcaccatatcgcttacatcgaactcacgtttcc Find is-nt database================================================ Query_seq: PG1174:PG1175|PG1174:PG1175:thioesterase family protein:ABC transporter, ATP-binding protein, putative:<-<-:1253798..1254259 462 aagtacgcaatagcagccggatagtatctgttagaaaacggtttattcacgaatgtgagttcgacccaagagattgggaaagtgaagacaatatagctctcattctatacttatggaacttttcgccaaaaccacaagtggaaaattctttttccactggtggaaacaaaactttccactggtggaaagatagctttccacttgtggaaattcggcgtgtaccaaatagtcgcctgacacacaataagaagaataaacaaaagtgcctgctcattgtgcaaaggtcccattaattcgtacttgtttgataaccgaacgtagcaatcgttaggtttatgacggcaaacttattccctttcattttccaattcggttatagtcaatatcccaacaagtgtttgatcgatatggcggatcttatgagagtcggcaccatatcgcttacatcgaactcacgtttcc Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PG1174:PG1175|PG1174:PG1175:thioesterase family protein:ABC transporter, ATP-binding protein, putative:<-<-:1253798..1254259 462 aagtacgcaatagcagccggatagtatctgttagaaaacggtttattcacgaatgtgagttcgacccaagagattgggaaagtgaagacaatatagctctcattctatacttatggaacttttcgccaaaaccacaagtggaaaattctttttccactggtggaaacaaaactttccactggtggaaagatagctttccacttgtggaaattcggcgtgtaccaaatagtcgcctgacacacaataagaagaataaacaaaagtgcctgctcattgtgcaaaggtcccattaattcgtacttgtttgataaccgaacgtagcaatcgttaggtttatgacggcaaacttattccctttcattttccaattcggttatagtcaatatcccaacaagtgtttgatcgatatggcggatcttatgagagtcggcaccatatcgcttacatcgaactcacgtttcc Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PG1174:PG1175|PG1174:PG1175:thioesterase family protein:ABC transporter, ATP-binding protein, putative:<-<-:1253798..1254259 462 aagtacgcaatagcagccggatagtatctgttagaaaacggtttattcacgaatgtgagttcgacccaagagattgggaaagtgaagacaatatagctctcattctatacttatggaacttttcgccaaaaccacaagtggaaaattctttttccactggtggaaacaaaactttccactggtggaaagatagctttccacttgtggaaattcggcgtgtaccaaatagtcgcctgacacacaataagaagaataaacaaaagtgcctgctcattgtgcaaaggtcccattaattcgtacttgtttgataaccgaacgtagcaatcgttaggtttatgacggcaaacttattccctttcattttccaattcggttatagtcaatatcccaacaagtgtttgatcgatatggcggatcttatgagagtcggcaccatatcgcttacatcgaactcacgtttcc Intra-Species Hit: Count: 0 Inter-species Hit: Count: 2 Min: 132 Max: 290 Len: 159 Subject: UniRef90_Q7MTZ0 Cluster: Hypothetical protein; n=1; Porphyromonas gingivalis|Rep: Hypothetical protein - Porphyromonas gingivalis (Bacteroides gingivalis) HSP 1 e-value: 2.0E-16 bit: 87.0 Len: 159 Query Start:132 Query End:290 Subject Strand: null Subject Start: 81 Subject End: 133 ................................................................................................................................... P Q V E N S F S T G G N K T F H W W K D S F P L V E I R R V P N S R L T H N K K N K Q K C L L I V Q R S H ............................................................................................................................................................................ ................................................................................................................................... P P L E K E V S T S G K F I F Q W W K D N F P L V E I R H V P N S R L T H N K K N E Q K C L L I V Q S S H ............................................................................................................................................................................ Subject: UniRef90_Q7MVZ0 Cluster: Hypothetical protein; n=1; Porphyromonas gingivalis|Rep: Hypothetical protein - Porphyromonas gingivalis (Bacteroides gingivalis) HSP 1 e-value: 2.0E-14 bit: 80.1 Len: 159 Query Start:132 Query End:290 Subject Strand: null Subject Start: 149 Subject End: 201 ................................................................................................................................... P Q V E N S F S T G G N K T F H W W K D S F P L V E I R R V P N S R L T H N K K N K Q K C L L I V Q R S H ............................................................................................................................................................................ ................................................................................................................................... P L V E K E V S T G G K F I F H G R K D I F P L V E N R R V P N S R L T H N K K N K Q K R L L I V Q R S H ............................................................................................................................................................................ aagtacgcaatagcagccggatagtatctgttagaaaacggtttattcacgaatgtgagttcgacccaagagattgggaaagtgaagacaatatagctctcattctatacttatggaacttttcgccaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaattcgtacttgtttgataaccgaacgtagcaatcgttaggtttatgacggcaaacttattccctttcattttccaattcggttatagtcaatatcccaacaagtgtttgatcgatatggcggatcttatgagagtcggcaccatatcgcttacatcgaactcacgtttcc Predict ORF larger than 30AA ================================================ Protein_Len: 30 Strand: + Start: 145 End: 234 ................................................................................................................................................ M L F P L V E T K L S T G G K I A F H L W K F G V Y Q I V A .................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 21 End: 290 .................... M V S V R K R F I H E C E F D P R D W E S E D N I A L I L Y L W N F S P K P Q V E N S F S T G G N K T F H W W K D S F P ............................................................................................................................................................................ Protein_Len: 46 Strand: + Start: 324 End: 461 ................................................................................................................................................................................................................................................................................................................................... M V R F M T A N L F P F I F Q F G Y S Q Y P N K C L I D M A D L M R V G T I S L T S N S R F . Protein_Len: 59 Strand: - Start: 114 End: 290 ................................................................................................................. P V K R W F W L H F I R K G S T S V F S E V P P F I A K W K H F N P T Y W I T A Q C V I L L I F L L A Q E N H L P G M ............................................................................................................................................................................ Protein_Len: 46 Strand: - Start: 103 End: 240 ...................................................................................................... E I S I S S K A L V V L P F N K K W Q H F C F K G S T S L Y S E V Q P F E A H V L Y D G S M .............................................................................................................................................................................................................................. Protein_Len: 60 Strand: - Start: 50 End: 274 ................................................. A R M R Y K H F K E G F G C T S F E K E V P P F L V K W Q H F S L K G S T S I R R T G F L R R V C L L F F L C F H R S M ............................................................................................................................................................................................ Protein_Len: 30 Strand: - Start: 3 End: 92 .. Y A I A A P Y Y R N S F P K N V F T L E V W S I P F T F V M .................................................................................................................................................................................................................................................................................................................................................................................. aagtacgcaatagcagccggatagtatctgttagaaaacggtttattcacgaatgtgagttcgacccaagagattgggaaagtgaagacaatatagctctcattctatacttatggaacttttcgccaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaattcgtacttgtttgataaccgaacgtagcaatcgttaggtttatgacggcaaacttattccctttcattttccaattcggttatagtcaatatcccaacaagtgtttgatcgatatggcggatcttatgagagtcggcaccatatcgcttacatcgaactcacgtttcc Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ aagtacgcaatagcagccggatagtatctgttagaaaacggtttattcacgaatgtgagttcgacccaagagattgggaaagtgaagacaatatagctctcattctatacttatggaacttttcgccaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaattcgtacttgtttgataaccgaacgtagcaatcgttaggtttatgacggcaaacttattccctttcattttccaattcggttatagtcaatatcccaacaagtgtttgatcgatatggcggatcttatgagagtcggcaccatatcgcttacatcgaactcacgtttcc Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 100 HP_score: -18.5 Tail_Score: -4.08064 Start: 132 End: 185 Full_Region: tggaaagctatcttt ccaccagtggaaagttttgtttcca ccag tggaaaaagaattttccacttgtgg ttttggcgaaaagtt ...................................................................................................................................ccaccagtggaaagttttgtttccaccagtggaaaaagaattttccacttgtgg..................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 66 HP_score: -6.6 Tail_Score: -3.69354 Start: 145 End: 194 Full_Region: AACCACAAGTGGAAA ATTCTTTTTCCACTGGTGGAAA CAAAAC TTTCCACTGGTGGAAAGATAGC TTTCCACTTGTGGAA ................................................................................................................................................ATTCTTTTTCCACTGGTGGAAACAAAACTTTCCACTGGTGGAAAGATAGC............................................................................................................................................................................................................................................................................ TransTerm Strand: + Conf: 73 HP_score: -10.1 Tail_Score: -2.81291 Start: 146 End: 193 Full_Region: ACCACAAGTGGAAAA TTCTTTTTCCACTGGTGGAAA CAAAAC TTTCCACTGGTGGAAAGATAG CTTTCCACTTGTGGA .................................................................................................................................................TTCTTTTTCCACTGGTGGAAACAAAACTTTCCACTGGTGGAAAGATAG............................................................................................................................................................................................................................................................................. TransTerm Strand: - Conf: 53 HP_score: -4.8 Tail_Score: -3.1268 Start: 147 End: 192 Full_Region: ccacaagtggaaagc tatctttccaccagtggaaa gttttg tttccaccagtggaaaaaga attttccacttgtgg ..................................................................................................................................................tatctttccaccagtggaaagttttgtttccaccagtggaaaaaga.............................................................................................................................................................................................................................................................................. TransTerm Strand: + Conf: 91 HP_score: -14.0 Tail_Score: -2.66593 Start: 149 End: 190 Full_Region: ACAAGTGGAAAATTC TTTTTCCACTGGTGGAAA CAAAAC TTTCCACTGGTGGAAAGA TAGCTTTCCACTTGT ....................................................................................................................................................TTTTTCCACTGGTGGAAACAAAACTTTCCACTGGTGGAAAGA................................................................................................................................................................................................................................................................................ TransTerm Strand: - Conf: 93 HP_score: -10.8 Tail_Score: -4.86731 Start: 172 End: 211 Full_Region: tttggtacacgccga atttccacaagtggaaag ctat ctttccaccagtggaaag ttttgtttccaccag ...........................................................................................................................................................................atttccacaagtggaaagctatctttccaccagtggaaag........................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 100 HP_score: -14.3 Tail_Score: -3.51557 Start: 173 End: 210 Full_Region: ttggtacacgccgaa tttccacaagtggaaag ctat ctttccaccagtggaaa gttttgtttccacca ............................................................................................................................................................................tttccacaagtggaaagctatctttccaccagtggaaa............................................................................................................................................................................................................................................................ TransTerm Strand: + Conf: 80 HP_score: -10.8 Tail_Score: -3.33261 Start: 182 End: 201 Full_Region: CAAAACTTTCCACTG GTGGAAAG ATAG CTTTCCAC TTGTGGAAATTCGGC .....................................................................................................................................................................................GTGGAAAGATAGCTTTCCAC..................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 53 HP_score: -2.5 Tail_Score: -3.85698 Start: 312 End: 332 Full_Region: GTACTTGTTTGATAA CCGAACG TAGCAAT CGTTAGG TTTATGACGGCAAAC .......................................................................................................................................................................................................................................................................................................................CCGAACGTAGCAATCGTTAGG.................................................................................................................................. TransTerm Strand: - Conf: 46 HP_score: -2.5 Tail_Score: -3.29144 Start: 312 End: 332 Full_Region: gtttgccgtcataaa cctaacg attgcta cgttcgg ttatcaaacaagtac .......................................................................................................................................................................................................................................................................................................................cctaacgattgctacgttcgg.................................................................................................................................. Find igs database================================================ Query_seq: PG1174:PG1175|PG1174:PG1175:thioesterase family protein:ABC transporter, ATP-binding protein, putative:<-<-:1253798..1254259 462 aagtacgcaatagcagccggatagtatctgttagaaaacggtttattcacgaatgtgagttcgacccaagagattgggaaagtgaagacaatatagctctcattctatacttatggaacttttcgccaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaattcgtacttgtttgataaccgaacgtagcaatcgttaggtttatgacggcaaacttattccctttcattttccaattcggttatagtcaatatcccaacaagtgtttgatcgatatggcggatcttatgagagtcggcaccatatcgcttacatcgaactcacgtttcc Intra-Species Hit: Count: 5 Min: 1 Max: 462 Len: 462 Subject: NC_002950_PG1174_PG1175|thioesterase family protein:ABC transporter, ATP-binding protein, putative|NEGATIVE:NEGATIVE|[1253798,1254259]|462 HSP 1 e-value: 1.0E-92 bit: 341.0 Len: 172 Query Start:291 Query End:462 Subject Strand: POSITIVE Subject Start: 291 Subject End: 462 ..................................................................................................................................................................................................................................................................................................taattcgtacttgtttgataaccgaacgtagcaatcgttaggtttatgacggcaaacttattccctttcattttccaattcggttatagtcaatatcccaacaagtgtttgatcgatatggcggatcttatgagagtcggcaccatatcgcttacatcgaactcacgtttcc ..................................................................................................................................................................................................................................................................................................taattcgtacttgtttgataaccgaacgtagcaatcgttaggtttatgacggcaaacttattccctttcattttccaattcggttatagtcaatatcccaacaagtgtttgatcgatatggcggatcttatgagagtcggcaccatatcgcttacatcgaactcacgtttcc HSP 2 e-value: 4.0E-68 bit: 260.0 Len: 131 Query Start:1 Query End:131 Subject Strand: POSITIVE Subject Start: 1 Subject End: 131 aagtacgcaatagcagccggatagtatctgttagaaaacggtttattcacgaatgtgagttcgacccaagagattgggaaagtgaagacaatatagctctcattctatacttatggaacttttcgccaaaa........................................................................................................................................................................................................................................................................................................................................... aagtacgcaatagcagccggatagtatctgttagaaaacggtttattcacgaatgtgagttcgacccaagagattgggaaagtgaagacaatatagctctcattctatacttatggaacttttcgccaaaa........................................................................................................................................................................................................................................................................................................................................... Subject: NC_002950_PG0237_PG0240|uracil-DNA glycosylase:hydrolase, haloacid dehalogenase-like family|POSITIVE:NEGATIVE|[275587,276484]|898 HSP 1 e-value: 2.0E-29 bit: 131.0 Len: 122 Query Start:338 Query End:459 Subject Strand: POSITIVE Subject Start: 652 Subject End: 773 .................................................................................................................................................................................................................................................................................................................................................gacggcaaacttattccctttcattttccaattcggttatagtcaatatcccaacaagtgtttgatcgatatggcggatcttatgagagtcggcaccatatcgcttacatcgaactcacgtt... .................................................................................................................................................................................................................................................................................................................................................gacgtcaaactttttccctttcattttctgattcggttatagtcaatgccccaacaagagcttgatcgataaggcggttctcatgagaatcgacaccatatcgcttacatcgacctcacgtt... Subject: NC_002950_PG1190_PG1195|glycerate dehydrogenase:8-amino-7-oxononanoate synthase|POSITIVE:POSITIVE|[1273206,1274118]|913 HSP 1 e-value: 9.0E-26 bit: 119.0 Len: 116 Query Start:343 Query End:458 Subject Strand: NEGATIVE Subject Start: 78 Subject End: 192 ......................................................................................................................................................................................................................................................................................................................................................caaacttattccctttcattttccaattcggttatagtcaatatcccaacaagtgtttgatcgatatggcggatcttatgagagtcggcaccatatcgcttacatcgaactcacgt.... ......................................................................................................................................................................................................................................................................................................................................................caaactttttccctttcattttctgat-cggttatagtcaatgccccaacaagagcttgatcgataaggcggctcttatgagaatcggcaccgtatcgcttacatcgaacacacgt.... Subject: NC_002950_PG0890_PG0893|alkaline phosphatase, putative:hydroxylamine reductase|POSITIVE:NEGATIVE|[953164,954290]|1127 HSP 1 e-value: 3.0E-13 bit: 77.8 Len: 39 Query Start:422 Query End:460 Subject Strand: POSITIVE Subject Start: 848 Subject End: 886 .....................................................................................................................................................................................................................................................................................................................................................................................................................................gagagtcggcaccatatcgcttacatcgaactcacgttt.. .....................................................................................................................................................................................................................................................................................................................................................................................................................................gagagtcggcaccatatcgcttacatcgaactcacgttt.. HSP 2 e-value: 1.0E-12 bit: 75.8 Len: 58 Query Start:338 Query End:395 Subject Strand: POSITIVE Subject Start: 789 Subject End: 846 .................................................................................................................................................................................................................................................................................................................................................gacggcaaacttattccctttcattttccaattcggttatagtcaatatcccaacaag................................................................... .................................................................................................................................................................................................................................................................................................................................................gacgtcaaactttttccctttcattttctgattcgattatagtcaatatcccaacaag................................................................... Subject: NC_002950_PG1954_PG1956|NAD dependent epimerase/reductase-related protein:4-hydroxybutyrate CoA-transferase|POSITIVE:NEGATIVE|[2045673,2046304]|632 HSP 1 e-value: 1.0E-12 bit: 75.8 Len: 58 Query Start:338 Query End:395 Subject Strand: POSITIVE Subject Start: 458 Subject End: 515 .................................................................................................................................................................................................................................................................................................................................................gacggcaaacttattccctttcattttccaattcggttatagtcaatatcccaacaag................................................................... .................................................................................................................................................................................................................................................................................................................................................gacgtcaaactttttccctttcattttctgattcggttatagtcaatatcccatcaag................................................................... HSP 2 e-value: 7.0E-8 bit: 60.0 Len: 38 Query Start:422 Query End:459 Subject Strand: POSITIVE Subject Start: 517 Subject End: 554 .....................................................................................................................................................................................................................................................................................................................................................................................................................................gagagtcggcaccatatcgcttacatcgaactcacgtt... .....................................................................................................................................................................................................................................................................................................................................................................................................................................gagaatcggcaccatatcgcttacattgaactcacgtt... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AAGUACGCAAUAGCAGCCGGAUAGUAUCUGUUAGAAAACGGUUUAUUCACGAAUGUGAGUUCGACCCAAGAGAUUGGGAAAGUGAAGACAAUAUAGCUCUCAUUCUAUACUUAUGGAACUUUUCGCCAAAACCACAAGUGGAAAAUUCUUUUUCCACUGGUGGAAACAAAACUUUCCACUGGUGGAAAGAUAGCUUUCCACUUGUGGAAAUUCGGCGUGUACCAAAUAGUCGCCUGACACACAAUAAGAAGAAUAAACAAAAGUGCCUGCUCAUUGUGCAAAGGUCCCAUUAAUUCGUACUUGUUUGAUAACCGAACGUAGCAAUCGUUAGGUUUAUGACGGCAAACUUAUUCCCUUUCAUUUUCCAAUUCGGUUAUAGUCAAUAUCCCAACAAGUGUUUGAUCGAUAUGGCGGAUCUUAUGAGAGUCGGCACCAUAUCGCUUACAUCGAACUCACGUUUCC ......((....))....((((((...(((((....))))).))))))..(((((((((((((((((((....))))).((((((................(((((...(((((((.((....((((....(((((((((((((.((.(((((((((..(((((((......)))))))..))))))))).)).)))))))))))))......)))).)).)).....(((....))).....))))).)))))........(((((.((((.(..((...(((((((((....(((((((((((..(((((((((..((((....))))((...((((.((.((.....)).))..))))...))..)))))))))............))))))))..))).....)))..))))))))..))))).)))))....))))))...)))))))))))))).. (-144.94) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ GGAAACGUGAGUUCGAUGUAAGCGAUAUGGUGCCGACUCUCAUAAGAUCCGCCAUAUCGAUCAAACACUUGUUGGGAUAUUGACUAUAACCGAAUUGGAAAAUGAAAGGGAAUAAGUUUGCCGUCAUAAACCUAACGAUUGCUACGUUCGGUUAUCAAACAAGUACGAAUUAAUGGGACCUUUGCACAAUGAGCAGGCACUUUUGUUUAUUCUUCUUAUUGUGUGUCAGGCGACUAUUUGGUACACGCCGAAUUUCCACAAGUGGAAAGCUAUCUUUCCACCAGUGGAAAGUUUUGUUUCCACCAGUGGAAAAAGAAUUUUCCACUUGUGGUUUUGGCGAAAAGUUCCAUAAGUAUAGAAUGAGAGCUAUAUUGUCUUCACUUUCCCAAUCUCUUGGGUCGAACUCACAUUCGUGAAUAAACCGUUUUCUAACAGAUACUAUCCGGCUGCUAUUGCGUACUU (((...(((((((((((.((((((((((((((..((.(((....)))))))))))))))...........(((((((...(((..(((((((((((((...((((..((.((.....)).)).))))....(....)....))).))))))))))...((((((((.((...((((..(((.(((((((((((.(((.((....))....))).)))))))))))..)))...)))))).)))).(((((((...((((((((((((((.....(((((((..(((((((......)))))))..))))))).....)))))))))))))).)))))))...((((((((.........))).)))))...))))..)))...)))))))..)))).)))))))))))...............(((....)))........)))....((....))...... (-145.50) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 898 100 51 191 142 NC_002950:PG1174|5end_thioesterase_family_protein_1253707..1253937_NEGATIVE 519 336 293 229 186 NC_002950:PG2220|5end_hypothetical_protein_2334935..2335165_POSITIVE 482 290 241 61 12 NC_002950:PG0494|5end_hypothetical_protein_535366..535596_NEGATIVE 481 333 293 229 184 NC_002950:PG1363|5end_hypothetical_protein_1443804..1444034_POSITIVE 396 336 292 229 185 NC_002950:PG1059|5end_hypothetical_protein_1126495..1126725_NEGATIVE 332 430 388 218 177 NC_002950:PG1806|5end_v-type_ATPase,_subunit_I_1900200..1900430_POSITIVE 327 337 291 149 110 NC_002950:PG1787|5end_hypothetical_protein_1875908..1876138_NEGATIVE 316 237 193 156 106 NC_002950:PG0295|5end_DNA_processing_protein_DprA,_putative_331300..331530_NEGATIVE 315 450 404 128 67 NC_002950:PG1333|5end_hypothetical_protein_1415425..1415655_NEGATIVE 314 434 394 73 20 NC_002950:PG0752|5end_uracil_phosphoribosyltransferase_797667..797897_POSITIVE 312 170 123 50 13 NC_002950:PG0253|5end_hypothetical_protein_284607..284837_POSITIVE 309 234 193 50 12 NC_002950:PG2106|5end_hypothetical_protein_2214694..2214924_POSITIVE 309 379 339 77 24 NC_002950:PG1551|5end_hmuY_protein_1628438..1628668_POSITIVE 308 37 3 64 28 NC_002950:PG0499|5end_hypothetical_protein_538709..538939_POSITIVE 308 239 193 204 155 NC_002950:PG0213|5end_precorrin-3_methylase/precorrin-8X_methylmutase_250464..250694_NEGATIVE 307 430 396 213 173 NC_002950:PG0597|5end_ribosomal_protein_L9_653662..653892_POSITIVE 306 188 141 155 108 NC_002950:PG0507|5end_hypothetical_protein_547916..548146_POSITIVE 305 222 182 208 159 NC_002950:PG0227|5end_DNA_repair_protein_RadA_263978..264208_NEGATIVE 303 290 241 199 148 NC_002950:PG1906|5end_ISPg1,_transposase_2005407..2005637_POSITIVE 303 235 194 181 151 NC_002950:PG1521|5end_O-succinylbenzoic_acid--CoA_ligase_1599103..1599333_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 820 249 204 46 1 NC_002950:PG1364|3end_1-deoxy-D-xylulose_5-phosphate_reductoisomerase_1444388..1444538_NEGATIVE 631 459 420 40 1 NC_002950:PG1884|3end_alpha-L-fucosidase_precursor,_putative_1978968..1979118_NEGATIVE 347 199 151 120 73 NC_002950:PG1363|3end_hypothetical_protein_1444159..1444309_POSITIVE 346 219 176 66 28 NC_002950:PG2094|3end_hypothetical_protein_2193321..2193471_NEGATIVE 343 460 411 53 1 NC_002950:PG1257|3end_hypothetical_protein_1334461..1334611_NEGATIVE 315 449 404 60 11 NC_002950:PG2207|3end_hypothetical_protein_2319142..2319292_NEGATIVE 315 450 404 131 70 NC_002950:PG1334|3end_band_7/Mec-2_family_protein_1415422..1415572_NEGATIVE 313 237 192 138 77 NC_002950:PG1303|3end_helicase,_putative_1382147..1382297_POSITIVE 307 240 192 67 14 NC_002950:PG2044|3end_hypothetical_protein_2144165..2144315_POSITIVE 301 440 400 151 115 NC_002950:PG0173|3end_transcriptional_regulator,_putative_194388..194538_NEGATIVE 300 448 401 127 94 NC_002950:PG0003|3end_hypothetical_protein_1919..2069_NEGATIVE 298 59 11 98 41 NC_002950:PG1395|3end_cell_shape-determining_protein_MreC,_putative_1476782..1476932_NEGATIVE 295 390 341 131 70 NC_002950:PG1851|3end_phosphopantothenoylcysteine_decarboxylase/phosphopantothenate--cysteine_ligase_1949954..1950104_NEGATIVE 291 417 371 150 99 NC_002950:PG0165|3end_heat_shock_protein_15_187370..187520_NEGATIVE 289 440 395 96 48 NC_002950:PG1392|3end_rod_shape-determining_protein_RodA,_putative_1472959..1473109_NEGATIVE 289 233 193 37 2 NC_002950:PG0147|3end_hypothetical_protein_169128..169278_NEGATIVE 288 280 232 52 6 NC_002950:PG1055|3end_thiol_protease_1121202..1121352_NEGATIVE 287 216 174 136 94 NC_002950:PG1544|3end_hypothetical_protein_1623442..1623592_POSITIVE 287 57 14 151 106 NC_002950:PG0269|3end_exodeoxyribonuclease_III_302872..303022_POSITIVE 286 59 12 58 18 NC_002950:PG0978|3end_shikimate_5-dehydrogenase_1040862..1041012_POSITIVE