Origin IGS: tagaaaggtatacaagcaaaattaggcttcaccggagttggtcttttttcttacatttgtggactcaacaactaaatgccctatatatgctacgacttcatataacatcgacaaacagtaaggccgattttgctatcccacatacccactctcccatcgcgaaaggagagaaaagaacgcttatacctatgacgaacaagcaggaataaggctatcaatagccggacaaaagcataaggcacgcacccgattcgaggctgaatcaggtgcgtgcctttcttttatcgcctgtcgaaagggctttcttcatctacgatctatatataaatggtatgacaatctatatagatatggaaatcgatttatatataaattgaaaacgattaatatacagatcgaaaatgatttatatataaatcgaaaatggttgatatacaaatcgtttttccatttcttagaaacccgaatccgagctaaagaagttcgttttaccaccttttggggttcaaaaggctcttactttcaggtgcttatttagaatcattcaaaactcatcttcgttgttgaaaacttttttggtgcgtatttttcagtgtttgccataagctccggagagcagagaaaaaggcctcccacgattgattgtcttcctccccctatcctacccccaaaaataccgctgtagctacttatcgatagtatgagtgcggctccgctcttgatgccggcagcagccgaaaaagggaatcgtgcttcattatttattacttttgcgcgataatgttctcgtgcagacgcggccgatgaccggatcgtgcacaggagaagcaaaaacattcttacaggaacaaagcgtacagt .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 actgtacgctttgttcctgtaagaatgtttttgcttctcctgtgcacgatccggtcatcggccgcgtctgcacgagaacattatcgcgcaaaagtaataaataatgaagcacgattccctttttcggctgctgccggcatcaagagcggagccgcactcatactatcgataagtagctacagcggtatttttgggggtaggatagggggaggaagacaatcaatcgtgggaggcctttttctctgctctccggagcttatggcaaacactgaaaaatacgcaccaaaaaagttttcaacaacgaagatgagttttgaatgattctaaataagcacctgaaagtaagagccttttgaaccccaaaaggtggtaaaacgaacttctttagctcggattcgggtttctaagaaatggaaaaacgatttgtatatcaaccattttcgatttatatataaatcattttcgatctgtatattaatcgttttcaatttatatataaatcgatttccatatctatatagattgtcataccatttatatatagatcgtagatgaagaaagccctttcgacaggcgataaaagaaaggcacgcacctgattcagcctcgaatcgggtgcgtgccttatgcttttgtccggctattgatagccttattcctgcttgttcgtcataggtataagcgttcttttctctcctttcgcgatgggagagtgggtatgtgggatagcaaaatcggccttactgtttgtcgatgttatatgaagtcgtagcatatatagggcatttagttgttgagtccacaaatgtaagaaaaaagaccaactccggtgaagcctaattttgcttgtatacctttcta Mask Tandem Repeat Region ================================================ tagaaaggtatacaagcaaaattaggcttcaccggagttggtcttttttcttacatttgtggactcaacaactaaatgccctatatatgctacgacttcatataacatcgacaaacagtaaggccgattttgctatcccacatacccactctcccatcgcgaaaggagagaaaagaacgcttatacctatgacgaacaagcaggaataaggctatcaatagccggacaaaagcataaggcacgcacccgattcgaggctgaatcaggtgcgtgcctttcttttatcgcctgtcgaaagggctttcttcatctacgatctatatataaatggtatgacaatctatatagatatggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttttccatttcttagaaacccgaatccgagctaaagaagttcgttttaccaccttttggggttcaaaaggctcttactttcaggtgcttatttagaatcattcaaaactcatcttcgttgttgaaaacttttttggtgcgtatttttcagtgtttgccataagctccggagagcagagaaaaaggcctcccacgattgattgtcttcctccccctatcctacccccaaaaataccgctgtagctacttatcgatagtatgagtgcggctccgctcttgatgccggcagcagccgaaaaagggaatcgtgcttcattatttattacttttgcgcgataatgttctcgtgcagacgcggccgatgaccggatcgtgcacaggagaagcaaaaacattcttacaggaacaaagcgtacagt Find is-nt database================================================ Query_seq: PG1130:PG1132|PG1130:PG1132:TPR domain protein:valyl-tRNA synthetase:->->:1210191..1211051 861 tagaaaggtatacaagcaaaattaggcttcaccggagttggtcttttttcttacatttgtggactcaacaactaaatgccctatatatgctacgacttcatataacatcgacaaacagtaaggccgattttgctatcccacatacccactctcccatcgcgaaaggagagaaaagaacgcttatacctatgacgaacaagcaggaataaggctatcaatagccggacaaaagcataaggcacgcacccgattcgaggctgaatcaggtgcgtgcctttcttttatcgcctgtcgaaagggctttcttcatctacgatctatatataaatggtatgacaatctatatagatatggaaatcgatttatatataaattgaaaacgattaatatacagatcgaaaatgatttatatataaatcgaaaatggttgatatacaaatcgtttttccatttcttagaaacccgaatccgagctaaagaagttcgttttaccaccttttggggttcaaaaggctcttactttcaggtgcttatttagaatcattcaaaactcatcttcgttgttgaaaacttttttggtgcgtatttttcagtgtttgccataagctccggagagcagagaaaaaggcctcccacgattgattgtcttcctccccctatcctacccccaaaaataccgctgtagctacttatcgatagtatgagtgcggctccgctcttgatgccggcagcagccgaaaaagggaatcgtgcttcattatttattacttttgcgcgataatgttctcgtgcagacgcggccgatgaccggatcgtgcacaggagaagcaaaaacattcttacaggaacaaagcgtacagt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PG1130:PG1132|PG1130:PG1132:TPR domain protein:valyl-tRNA synthetase:->->:1210191..1211051 861 tagaaaggtatacaagcaaaattaggcttcaccggagttggtcttttttcttacatttgtggactcaacaactaaatgccctatatatgctacgacttcatataacatcgacaaacagtaaggccgattttgctatcccacatacccactctcccatcgcgaaaggagagaaaagaacgcttatacctatgacgaacaagcaggaataaggctatcaatagccggacaaaagcataaggcacgcacccgattcgaggctgaatcaggtgcgtgcctttcttttatcgcctgtcgaaagggctttcttcatctacgatctatatataaatggtatgacaatctatatagatatggaaatcgatttatatataaattgaaaacgattaatatacagatcgaaaatgatttatatataaatcgaaaatggttgatatacaaatcgtttttccatttcttagaaacccgaatccgagctaaagaagttcgttttaccaccttttggggttcaaaaggctcttactttcaggtgcttatttagaatcattcaaaactcatcttcgttgttgaaaacttttttggtgcgtatttttcagtgtttgccataagctccggagagcagagaaaaaggcctcccacgattgattgtcttcctccccctatcctacccccaaaaataccgctgtagctacttatcgatagtatgagtgcggctccgctcttgatgccggcagcagccgaaaaagggaatcgtgcttcattatttattacttttgcgcgataatgttctcgtgcagacgcggccgatgaccggatcgtgcacaggagaagcaaaaacattcttacaggaacaaagcgtacagt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PG1130:PG1132|PG1130:PG1132:TPR domain protein:valyl-tRNA synthetase:->->:1210191..1211051 861 tagaaaggtatacaagcaaaattaggcttcaccggagttggtcttttttcttacatttgtggactcaacaactaaatgccctatatatgctacgacttcatataacatcgacaaacagtaaggccgattttgctatcccacatacccactctcccatcgcgaaaggagagaaaagaacgcttatacctatgacgaacaagcaggaataaggctatcaatagccggacaaaagcataaggcacgcacccgattcgaggctgaatcaggtgcgtgcctttcttttatcgcctgtcgaaagggctttcttcatctacgatctatatataaatggtatgacaatctatatagatatggaaatcgatttatatataaattgaaaacgattaatatacagatcgaaaatgatttatatataaatcgaaaatggttgatatacaaatcgtttttccatttcttagaaacccgaatccgagctaaagaagttcgttttaccaccttttggggttcaaaaggctcttactttcaggtgcttatttagaatcattcaaaactcatcttcgttgttgaaaacttttttggtgcgtatttttcagtgtttgccataagctccggagagcagagaaaaaggcctcccacgattgattgtcttcctccccctatcctacccccaaaaataccgctgtagctacttatcgatagtatgagtgcggctccgctcttgatgccggcagcagccgaaaaagggaatcgtgcttcattatttattacttttgcgcgataatgttctcgtgcagacgcggccgatgaccggatcgtgcacaggagaagcaaaaacattcttacaggaacaaagcgtacagt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 tagaaaggtatacaagcaaaattaggcttcaccggagttggtcttttttcttacatttgtggactcaacaactaaatgccctatatatgctacgacttcatataacatcgacaaacagtaaggccgattttgctatcccacatacccactctcccatcgcgaaaggagagaaaagaacgcttatacctatgacgaacaagcaggaataaggctatcaatagccggacaaaagcataaggcacgcacccgattcgaggctgaatcaggtgcgtgcctttcttttatcgcctgtcgaaagggctttcttcatctacgatctatatataaatggtatgacaatctatatagatatggaaatcgatttatatataaattgaaaacgattaatatacagatcgaaaatgatttatatataaatcgaaaatggttgatatacaaatcgtttttccatttcttagaaacccgaatccgagctaaagaagttcgttttaccaccttttggggttcaaaaggctcttactttcaggtgcttatttagaatcattcaaaactcatcttcgttgttgaaaacttttttggtgcgtatttttcagtgtttgccataagctccggagagcagagaaaaaggcctcccacgattgattgtcttcctccccctatcctacccccaaaaataccgctgtagctacttatcgatagtatgagtgcggctccgctcttgatgccggcagcagccgaaaaagggaatcgtgcttcattatttattacttttgcgcgataatgttctcgtgcagacgcggccgatgaccggatcgtgcacaggagaagcaaaaacattcttacaggaacaaagcgtacagt Predict ORF larger than 30AA ================================================ Protein_Len: 60 Strand: + Start: 21 End: 206 .................... M R L H R S W S F F L H L W T Q Q L N A L Y M L R L H I T S T N S K A D F A I P H T H S P I A K G E K R T L I P M T N K ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 47 Strand: + Start: 234 End: 374 ......................................................................................................................................................................................................................................... M R H A P D S R L N Q V R A F L L S P V E R A F F I Y D L Y I N G M T I Y I D M E I D L Y I N ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 206 End: 535 ............................................................................................................................................................................................................. M R L S I A G Q K H K A R T R F E A E S G A C L S F I A C R K G F L H L R S I Y K W Y D N L Y R Y G N R F I Y K L K T I ...................................................................................................................................................................................................................................................................................................................................... Protein_Len: 43 Strand: + Start: 554 End: 682 ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M F V V E N F F G A Y F S V F A I S S G E Q R K R P P T I D C L P P P I L P P K I P L ................................................................................................................................................................................... Protein_Len: 38 Strand: + Start: 747 End: 860 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M V L H Y L L L L R D N V L V Q T R P M T G S C T G E A K T F L Q E Q S V Q . Protein_Len: 60 Strand: - Start: 544 End: 837 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... I R G G F I G S Y S S I S L I L A A G S K I G A A A S F P F R A E N N I V K A R Y H E R A S A A S S R I T C L L L L F M ........................ Protein_Len: 60 Strand: - Start: 310 End: 495 ..................................................................................................................................................................................................................................................................................................................... D I Y L H Y S L R Y L Y P F R N I Y L N F V I L I C I S F S K Y I F R F H N I Y L D N K W K K S V R I R A L S T R K V M .............................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 32 Strand: - Start: 190 End: 285 ............................................................................................................................................................................................. S S C A P I L S D I A P C F C L A R V R N S A S D P A H R E K M ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 33 Strand: - Start: 101 End: 199 .................................................................................................... I V D V F L L A S K A I G C V W E G M A F P S F L V S I G I V F M ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 58 Strand: - Start: 93 End: 266 ............................................................................................ S K M Y C R C V T L G I K S D W M G V R G D R F S L F S R K Y R H R V L L F L A I L L R V F A Y P V C G I R P Q I M ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 30 Strand: - Start: 25 End: 114 ........................ A E G S N T K K R V N T S E V V L H G I Y A V V E Y L M S M ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... tagaaaggtatacaagcaaaattaggcttcaccggagttggtcttttttcttacatttgtggactcaacaactaaatgccctatatatgctacgacttcatataacatcgacaaacagtaaggccgattttgctatcccacatacccactctcccatcgcgaaaggagagaaaagaacgcttatacctatgacgaacaagcaggaataaggctatcaatagccggacaaaagcataaggcacgcacccgattcgaggctgaatcaggtgcgtgcctttcttttatcgcctgtcgaaagggctttcttcatctacgatctatatataaatggtatgacaatctatatagatatggaaatcgatttatatataaattgaaaacgattaatatacagatcgaaaatgatttatatataaatcgaaaatggttgatatacaaatcgtttttccatttcttagaaacccgaatccgagctaaagaagttcgttttaccaccttttggggttcaaaaggctcttactttcaggtgcttatttagaatcattcaaaactcatcttcgttgttgaaaacttttttggtgcgtatttttcagtgtttgccataagctccggagagcagagaaaaaggcctcccacgattgattgtcttcctccccctatcctacccccaaaaataccgctgtagctacttatcgatagtatgagtgcggctccgctcttgatgccggcagcagccgaaaaagggaatcgtgcttcattatttattacttttgcgcgataatgttctcgtgcagacgcggccgatgaccggatcgtgcacaggagaagcaaaaacattcttacaggaacaaagcgtacagt Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ tagaaaggtatacaagcaaaattaggcttcaccggagttggtcttttttcttacatttgtggactcaacaactaaatgccctatatatgctacgacttcatataacatcgacaaacagtaaggccgattttgctatcccacatacccactctcccatcgcgaaaggagagaaaagaacgcttatacctatgacgaacaagcaggaataaggctatcaatagccggacaaaagcataaggcacgcacccgattcgaggctgaatcaggtgcgtgcctttcttttatcgcctgtcgaaagggctttcttcatctacgatctatatataaatggtatgacaatctatatagatatggaaatcgatttatatataaattgaaaacgattaatatacagatcgaaaatgatttatatataaatcgaaaatggttgatatacaaatcgtttttccatttcttagaaacccgaatccgagctaaagaagttcgttttaccaccttttggggttcaaaaggctcttactttcaggtgcttatttagaatcattcaaaactcatcttcgttgttgaaaacttttttggtgcgtatttttcagtgtttgccataagctccggagagcagagaaaaaggcctcccacgattgattgtcttcctccccctatcctacccccaaaaataccgctgtagctacttatcgatagtatgagtgcggctccgctcttgatgccggcagcagccgaaaaagggaatcgtgcttcattatttattacttttgcgcgataatgttctcgtgcagacgcggccgatgaccggatcgtgcacaggagaagcaaaaacattcttacaggaacaaagcgtacagt Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 100 HP_score: -15.2 Tail_Score: -4.39828 Start: 232 End: 279 Full_Region: cgacaggcgataaaa gaaaggcacgcacctgattc agcctc gaatcgggtgcgtgccttatgc ttttgtccggctatt .......................................................................................................................................................................................................................................gaaaggcacgcacctgattcagcctcgaatcgggtgcgtgccttatgc...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 100 HP_score: -20.7 Tail_Score: -4.77775 Start: 238 End: 275 Full_Region: CGGACAAAAGCATAA GGCACGCACCCGATTCG AGGC TGAATCAGGTGCGTGCC TTTCTTTTATCGCCT .............................................................................................................................................................................................................................................GGCACGCACCCGATTCGAGGCTGAATCAGGTGCGTGCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 100 HP_score: -22.2 Tail_Score: -3.72405 Start: 238 End: 275 Full_Region: aggcgataaaagaaa ggcacgcacctgattc agcctc gaatcgggtgcgtgcc ttatgcttttgtccg .............................................................................................................................................................................................................................................ggcacgcacctgattcagcctcgaatcgggtgcgtgcc.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 66 HP_score: -4.5 Tail_Score: -4.41177 Start: 381 End: 420 Full_Region: tatatcaaccatttt cgatttatatataaatc attttc gatctgtatattaatcg ttttcaatttatata ............................................................................................................................................................................................................................................................................................................................................................................................cgatttatatataaatcattttcgatctgtatattaatcg......................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 63 HP_score: -4.4 Tail_Score: -4.14013 Start: 470 End: 486 Full_Region: TTAGAAACCCGAATC CGAGCT AAAGA AGTTCG TTTTACCACCTTTTG .....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGCTAAAGAAGTTCG....................................................................................................................................................................................................................................................................................................................................................................................... Find igs database================================================ Query_seq: PG1130:PG1132|PG1130:PG1132:TPR domain protein:valyl-tRNA synthetase:->->:1210191..1211051 861 tagaaaggtatacaagcaaaattaggcttcaccggagttggtcttttttcttacatttgtggactcaacaactaaatgccctatatatgctacgacttcatataacatcgacaaacagtaaggccgattttgctatcccacatacccactctcccatcgcgaaaggagagaaaagaacgcttatacctatgacgaacaagcaggaataaggctatcaatagccggacaaaagcataaggcacgcacccgattcgaggctgaatcaggtgcgtgcctttcttttatcgcctgtcgaaagggctttcttcatctacgatctatatataaatggtatgacaatctatatagatatggaaatcgatttatatataaattgaaaacgattaatatacagatcgaaaatgatttatatataaatcgaaaatggttgatatacaaatcgtttttccatttcttagaaacccgaatccgagctaaagaagttcgttttaccaccttttggggttcaaaaggctcttactttcaggtgcttatttagaatcattcaaaactcatcttcgttgttgaaaacttttttggtgcgtatttttcagtgtttgccataagctccggagagcagagaaaaaggcctcccacgattgattgtcttcctccccctatcctacccccaaaaataccgctgtagctacttatcgatagtatgagtgcggctccgctcttgatgccggcagcagccgaaaaagggaatcgtgcttcattatttattacttttgcgcgataatgttctcgtgcagacgcggccgatgaccggatcgtgcacaggagaagcaaaaacattcttacaggaacaaagcgtacagt Intra-Species Hit: Count: 14 Min: 1 Max: 861 Len: 861 Subject: NC_002950_PG1130_PG1132|TPR domain protein:valyl-tRNA synthetase|POSITIVE:POSITIVE|[1210191,1211051]|861 HSP 1 e-value: 0.0 bit: 1707.0 Len: 861 Query Start:1 Query End:861 Subject Strand: POSITIVE Subject Start: 1 Subject End: 861 tagaaaggtatacaagcaaaattaggcttcaccggagttggtcttttttcttacatttgtggactcaacaactaaatgccctatatatgctacgacttcatataacatcgacaaacagtaaggccgattttgctatcccacatacccactctcccatcgcgaaaggagagaaaagaacgcttatacctatgacgaacaagcaggaataaggctatcaatagccggacaaaagcataaggcacgcacccgattcgaggctgaatcaggtgcgtgcctttcttttatcgcctgtcgaaagggctttcttcatctacgatctatatataaatggtatgacaatctatatagatatggaaatcgatttatatataaattgaaaacgattaatatacagatcgaaaatgatttatatataaatcgaaaatggttgatatacaaatcgtttttccatttcttagaaacccgaatccgagctaaagaagttcgttttaccaccttttggggttcaaaaggctcttactttcaggtgcttatttagaatcattcaaaactcatcttcgttgttgaaaacttttttggtgcgtatttttcagtgtttgccataagctccggagagcagagaaaaaggcctcccacgattgattgtcttcctccccctatcctacccccaaaaataccgctgtagctacttatcgatagtatgagtgcggctccgctcttgatgccggcagcagccgaaaaagggaatcgtgcttcattatttattacttttgcgcgataatgttctcgtgcagacgcggccgatgaccggatcgtgcacaggagaagcaaaaacattcttacaggaacaaagcgtacagt tagaaaggtatacaagcaaaattaggcttcaccggagttggtcttttttcttacatttgtggactcaacaactaaatgccctatatatgctacgacttcatataacatcgacaaacagtaaggccgattttgctatcccacatacccactctcccatcgcgaaaggagagaaaagaacgcttatacctatgacgaacaagcaggaataaggctatcaatagccggacaaaagcataaggcacgcacccgattcgaggctgaatcaggtgcgtgcctttcttttatcgcctgtcgaaagggctttcttcatctacgatctatatataaatggtatgacaatctatatagatatggaaatcgatttatatataaattgaaaacgattaatatacagatcgaaaatgatttatatataaatcgaaaatggttgatatacaaatcgtttttccatttcttagaaacccgaatccgagctaaagaagttcgttttaccaccttttggggttcaaaaggctcttactttcaggtgcttatttagaatcattcaaaactcatcttcgttgttgaaaacttttttggtgcgtatttttcagtgtttgccataagctccggagagcagagaaaaaggcctcccacgattgattgtcttcctccccctatcctacccccaaaaataccgctgtagctacttatcgatagtatgagtgcggctccgctcttgatgccggcagcagccgaaaaagggaatcgtgcttcattatttattacttttgcgcgataatgttctcgtgcagacgcggccgatgaccggatcgtgcacaggagaagcaaaaacattcttacaggaacaaagcgtacagt Subject: NC_002950_PG0404_PG0408|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[440197,441041]|845 HSP 1 e-value: 2.0E-15 bit: 85.7 Len: 55 Query Start:528 Query End:582 Subject Strand: POSITIVE Subject Start: 626 Subject End: 680 ...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tgcttatttagaatcattcaaaactcatcttcgttgttgaaaacttttttggtgc....................................................................................................................................................................................................................................................................................... ...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tgcttatttggaatcattccaaactcgtcttcgttgttgaaaacttttttggtgc....................................................................................................................................................................................................................................................................................... HSP 2 e-value: 1.0E-7 bit: 60.0 Len: 86 Query Start:359 Query End:444 Subject Strand: POSITIVE Subject Start: 457 Subject End: 542 ......................................................................................................................................................................................................................................................................................................................................................................cgatttatatataaattgaaaacgattaatatacagatcgaaaatgatttatatataaatcgaaaatggttgatatacaaatcgtt................................................................................................................................................................................................................................................................................................................................................................................................................................. ......................................................................................................................................................................................................................................................................................................................................................................cgatctatatatttattgaaaacgatttatatataaaacgaaaaccatttatatataaattgaaagtcatttatatacaaatcgtt................................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: NC_002950_PG1743_PG1745|2-dehydro-3-deoxyphosphooctonate aldolase:phosphoribulokinase family protein|NEGATIVE:NEGATIVE|[1828439,1829524]|1086 HSP 1 e-value: 4.0E-14 bit: 81.8 Len: 65 Query Start:527 Query End:591 Subject Strand: NEGATIVE Subject Start: 266 Subject End: 330 ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gtgcttatttagaatcattcaaaactcatcttcgttgttgaaaacttttttggtgcgtatttttc.............................................................................................................................................................................................................................................................................. ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gtgcttatttggaatcattccaaacacttcttcgttgttgaaaacttttttggcgcatatttttc.............................................................................................................................................................................................................................................................................. HSP 2 e-value: 8.0E-6 bit: 54.0 Len: 55 Query Start:361 Query End:415 Subject Strand: NEGATIVE Subject Start: 420 Subject End: 474 ........................................................................................................................................................................................................................................................................................................................................................................atttatatataaattgaaaacgattaatatacagatcgaaaatgatttatatata.............................................................................................................................................................................................................................................................................................................................................................................................................................................................. ........................................................................................................................................................................................................................................................................................................................................................................atttatatacaaaatgaaaacgatttatatataaatcaaaaatgattaatatata.............................................................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: NC_002950_PG0903_PG0906|hypothetical protein:lipoprotein, putative|NEGATIVE:POSITIVE|[969731,970755]|1025 HSP 1 e-value: 4.0E-14 bit: 81.8 Len: 49 Query Start:529 Query End:577 Subject Strand: NEGATIVE Subject Start: 263 Subject End: 311 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gcttatttagaatcattcaaaactcatcttcgttgttgaaaactttttt............................................................................................................................................................................................................................................................................................ ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gcttatttagaatcattccaaactcgtcttcgttgttgaaaactttttt............................................................................................................................................................................................................................................................................................ HSP 2 e-value: 4.0E-11 bit: 71.9 Len: 60 Query Start:361 Query End:420 Subject Strand: NEGATIVE Subject Start: 398 Subject End: 457 ........................................................................................................................................................................................................................................................................................................................................................................atttatatataaattgaaaacgattaatatacagatcgaaaatgatttatatataaatcg......................................................................................................................................................................................................................................................................................................................................................................................................................................................... ........................................................................................................................................................................................................................................................................................................................................................................atttatatataaatcgaaatcgttttatatacaaatcaaaaatgatttatatataaatcg......................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 3 e-value: 2.0E-6 bit: 56.0 Len: 84 Query Start:360 Query End:443 Subject Strand: NEGATIVE Subject Start: 397 Subject End: 480 .......................................................................................................................................................................................................................................................................................................................................................................gatttatatataaattgaaaacgattaatatacagatcgaaaatgatttatatataaatcgaaaatggttgatatacaaatcgt.................................................................................................................................................................................................................................................................................................................................................................................................................................. .......................................................................................................................................................................................................................................................................................................................................................................gatttatatatttattgaaaaccatttatatataaatcgaaatcgttttatatacaaatcaaaaatgatttatatataaatcgt.................................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: NC_002950_PG0340_PG0343|hypothetical protein:methionine gamma-lyase|POSITIVE:NEGATIVE|[376497,377270]|774 HSP 1 e-value: 1.0E-13 bit: 79.8 Len: 108 Query Start:336 Query End:443 Subject Strand: POSITIVE Subject Start: 388 Subject End: 495 ...............................................................................................................................................................................................................................................................................................................................................acaatctatatagatatggaaatcgatttatatataaattgaaaacgattaatatacagatcgaaaatgatttatatataaatcgaaaatggttgatatacaaatcgt.................................................................................................................................................................................................................................................................................................................................................................................................................................. ...............................................................................................................................................................................................................................................................................................................................................acaatctatatatttatcgcaatcgatttatatataaattaaaaatgatttatatacaaaatgaaaacgatatatatacaaatcgaaaaagctttatatataaatcgt.................................................................................................................................................................................................................................................................................................................................................................................................................................. HSP 2 e-value: 2.0E-12 bit: 75.8 Len: 54 Query Start:524 Query End:577 Subject Strand: POSITIVE Subject Start: 576 Subject End: 629 ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................caggtgcttatttagaatcattcaaaactcatcttcgttgttgaaaactttttt............................................................................................................................................................................................................................................................................................ ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................caggtgcttatttggaatgattccaaactcgtcttcgttgttgaaaactttttt............................................................................................................................................................................................................................................................................................ Subject: NC_002950_PG1167_PG1169|hypothetical protein:hypothetical protein|POSITIVE:NEGATIVE|[1248705,1249172]|468 HSP 1 e-value: 2.0E-12 bit: 75.8 Len: 86 Query Start:359 Query End:444 Subject Strand: NEGATIVE Subject Start: 62 Subject End: 147 ......................................................................................................................................................................................................................................................................................................................................................................cgatttatatataaattgaaaacgattaatatacagatcgaaaatgatttatatataaatcgaaaatggttgatatacaaatcgtt................................................................................................................................................................................................................................................................................................................................................................................................................................. ......................................................................................................................................................................................................................................................................................................................................................................cgatctatatataaatggaaaacgatttatatataaaacgaaaacgatctatatatagatcgaaaacggtttatatacagatcgtt................................................................................................................................................................................................................................................................................................................................................................................................................................. HSP 2 e-value: 1.0E-10 bit: 69.9 Len: 75 Query Start:339 Query End:413 Subject Strand: NEGATIVE Subject Start: 71 Subject End: 145 ..................................................................................................................................................................................................................................................................................................................................................atctatatagatatggaaatcgatttatatataaattgaaaacgattaatatacagatcgaaaatgatttatata................................................................................................................................................................................................................................................................................................................................................................................................................................................................ ..................................................................................................................................................................................................................................................................................................................................................atctatatataaatggaaaacgatttatatataaaacgaaaacgatctatatatagatcgaaaacggtttatata................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Subject: NC_002950_PG1889_PG1890|hypothetical protein:lipoprotein, putative|POSITIVE:POSITIVE|[1987151,1987704]|554 HSP 1 e-value: 9.0E-12 bit: 73.8 Len: 85 Query Start:359 Query End:443 Subject Strand: POSITIVE Subject Start: 154 Subject End: 238 ......................................................................................................................................................................................................................................................................................................................................................................cgatttatatataaattgaaaacgattaatatacagatcgaaaatgatttatatataaatcgaaaatggttgatatacaaatcgt.................................................................................................................................................................................................................................................................................................................................................................................................................................. ......................................................................................................................................................................................................................................................................................................................................................................cgatatatatatttattgaaaacgatttatatataaattgaaaacgatctatatataaattgaaaatggtttatatacagatcgt.................................................................................................................................................................................................................................................................................................................................................................................................................................. HSP 2 e-value: 9.0E-12 bit: 73.8 Len: 61 Query Start:519 Query End:579 Subject Strand: POSITIVE Subject Start: 315 Subject End: 375 ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................actttcaggtgcttatttagaatcattcaaaactcatcttcgttgttgaaaacttttttgg.......................................................................................................................................................................................................................................................................................... ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................actttcagctgcttatttagaatgattctaagctcgtcttcattgttgaaaacttttttgg.......................................................................................................................................................................................................................................................................................... HSP 3 e-value: 9.0E-9 bit: 63.9 Len: 60 Query Start:354 Query End:413 Subject Strand: POSITIVE Subject Start: 171 Subject End: 230 .................................................................................................................................................................................................................................................................................................................................................................gaaatcgatttatatataaattgaaaacgattaatatacagatcgaaaatgatttatata................................................................................................................................................................................................................................................................................................................................................................................................................................................................ .................................................................................................................................................................................................................................................................................................................................................................gaaaacgatttatatataaattgaaaacgatctatatataaattgaaaatggtttatata................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Subject: NC_002950_PG1411_PG1414|potassium uptake protein TrkA, putative:hypothetical protein|NEGATIVE:POSITIVE|[1495257,1497148]|1892 HSP 1 e-value: 9.0E-12 bit: 73.8 Len: 53 Query Start:520 Query End:572 Subject Strand: NEGATIVE Subject Start: 1088 Subject End: 1140 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ctttcaggtgcttatttagaatcattcaaaactcatcttcgttgttgaaaact................................................................................................................................................................................................................................................................................................. .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ctttcaggtgcttatttagaatcattccaaattccgcttcgttgttgaaaact................................................................................................................................................................................................................................................................................................. HSP 2 e-value: 2.0E-9 bit: 65.9 Len: 57 Query Start:358 Query End:414 Subject Strand: NEGATIVE Subject Start: 1246 Subject End: 1302 .....................................................................................................................................................................................................................................................................................................................................................................tcgatttatatataaattgaaaacgattaatatacagatcgaaaatgatttatatat............................................................................................................................................................................................................................................................................................................................................................................................................................................................... .....................................................................................................................................................................................................................................................................................................................................................................tcgatctatatataaattgaaaatgatttatatacaaatcgaaaacgatctatatat............................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: NC_002950_PG0022_PG0024|sulfate permease family protein:redox-sensing transcriptional repressor Rex|NEGATIVE:POSITIVE|[26887,27871]|985 HSP 1 e-value: 9.0E-12 bit: 73.8 Len: 61 Query Start:529 Query End:589 Subject Strand: NEGATIVE Subject Start: 223 Subject End: 283 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gcttatttagaatcattcaaaactcatcttcgttgttgaaaacttttttggtgcgtatttt................................................................................................................................................................................................................................................................................ ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gcttatttagaatgattccaaactcttcttcgttgttgaaaacttttctggtctgtatttt................................................................................................................................................................................................................................................................................ HSP 2 e-value: 4.0E-11 bit: 71.9 Len: 64 Query Start:361 Query End:424 Subject Strand: NEGATIVE Subject Start: 410 Subject End: 473 ........................................................................................................................................................................................................................................................................................................................................................................atttatatataaattgaaaacgattaatatacagatcgaaaatgatttatatataaatcgaaaa..................................................................................................................................................................................................................................................................................................................................................................................................................................................... ........................................................................................................................................................................................................................................................................................................................................................................atttatatacaaatcgaatacgatctatatacaaatggaaaatgatttatatataaatcgaaaa..................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: NC_002950_PG2083_PG2085|hypothetical protein:tryptophanyl-tRNA synthetase|NEGATIVE:POSITIVE|[2184598,2185671]|1074 HSP 1 e-value: 1.0E-10 bit: 69.9 Len: 67 Query Start:359 Query End:425 Subject Strand: POSITIVE Subject Start: 543 Subject End: 609 ......................................................................................................................................................................................................................................................................................................................................................................cgatttatatataaattgaaaacgattaatatacagatcgaaaatgatttatatataaatcgaaaat.................................................................................................................................................................................................................................................................................................................................................................................................................................................... ......................................................................................................................................................................................................................................................................................................................................................................cgatttatatataaattagaaacgatctatatacaaatcgaaaacggtttatatataaatcgcaaat.................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 1.0E-10 bit: 69.9 Len: 63 Query Start:530 Query End:592 Subject Strand: POSITIVE Subject Start: 692 Subject End: 754 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cttatttagaatcattcaaaactcatcttcgttgttgaaaacttttttggtgcgtatttttca............................................................................................................................................................................................................................................................................. .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cttatttggaatgattctaaactcagcttcgttgttgaaaacttttttggcacgtatatttca............................................................................................................................................................................................................................................................................. Subject: NC_002950_PG1375_PG1378|hypothetical protein:A/G-specific adenine glycosylase|POSITIVE:NEGATIVE|[1456804,1457804]|1001 HSP 1 e-value: 1.0E-10 bit: 69.9 Len: 51 Query Start:527 Query End:577 Subject Strand: NEGATIVE Subject Start: 321 Subject End: 371 ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gtgcttatttagaatcattcaaaactcatcttcgttgttgaaaactttttt............................................................................................................................................................................................................................................................................................ ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gtgcttatttggaatgattctaaactcatcttcattgttgaaaactttttt............................................................................................................................................................................................................................................................................................ HSP 2 e-value: 2.0E-6 bit: 56.0 Len: 60 Query Start:387 Query End:446 Subject Strand: NEGATIVE Subject Start: 451 Subject End: 510 ..................................................................................................................................................................................................................................................................................................................................................................................................atatacagatcgaaaatgatttatatataaatcgaaaatggttgatatacaaatcgtttt............................................................................................................................................................................................................................................................................................................................................................................................................................... ..................................................................................................................................................................................................................................................................................................................................................................................................atatatagatcaaaaacgatctatatacaaatcgaaaatgatttatatacagatcgtttt............................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 3 e-value: 2.0E-6 bit: 56.0 Len: 52 Query Start:362 Query End:413 Subject Strand: NEGATIVE Subject Start: 462 Subject End: 513 .........................................................................................................................................................................................................................................................................................................................................................................tttatatataaattgaaaacgattaatatacagatcgaaaatgatttatata................................................................................................................................................................................................................................................................................................................................................................................................................................................................ .........................................................................................................................................................................................................................................................................................................................................................................tttatatatagatcaaaaacgatctatatacaaatcgaaaatgatttatata................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Subject: NC_002950_PG1013_PG1014|acetyl-CoA hydrolase/transferase family protein:TPR domain protein|POSITIVE:POSITIVE|[1073371,1073902]|532 HSP 1 e-value: 6.0E-10 bit: 67.9 Len: 66 Query Start:514 Query End:579 Subject Strand: POSITIVE Subject Start: 316 Subject End: 381 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ctcttactttcaggtgcttatttagaatcattcaaaactcatcttcgttgttgaaaacttttttgg.......................................................................................................................................................................................................................................................................................... .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ctcttcctttcagtcgcttatttagaaccattccaaacttctcttcattgttgaaaacttttttgg.......................................................................................................................................................................................................................................................................................... HSP 2 e-value: 3.0E-8 bit: 61.9 Len: 59 Query Start:364 Query End:422 Subject Strand: POSITIVE Subject Start: 188 Subject End: 246 ...........................................................................................................................................................................................................................................................................................................................................................................tatatataaattgaaaacgattaatatacagatcgaaaatgatttatatataaatcgaa....................................................................................................................................................................................................................................................................................................................................................................................................................................................... ...........................................................................................................................................................................................................................................................................................................................................................................tatatattaaatgaaaacgatttatatataaatcgaaaatgataaatatataaatcgaa....................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: NC_002950_PG0094_PG0095|outer membrane efflux protein, putative:DNA mismatch repair protein|NEGATIVE:NEGATIVE|[111284,112177]|894 HSP 1 e-value: 9.0E-9 bit: 63.9 Len: 52 Query Start:528 Query End:579 Subject Strand: POSITIVE Subject Start: 778 Subject End: 829 ...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tgcttatttagaatcattcaaaactcatcttcgttgttgaaaacttttttgg.......................................................................................................................................................................................................................................................................................... ...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tgcttatttggaatgattccaagctcgtcttcgttgttgaaaacttttttgg.......................................................................................................................................................................................................................................................................................... HSP 2 e-value: 3.0E-8 bit: 61.9 Len: 87 Query Start:359 Query End:445 Subject Strand: POSITIVE Subject Start: 653 Subject End: 739 ......................................................................................................................................................................................................................................................................................................................................................................cgatttatatataaattgaaaacgattaatatacagatcgaaaatgatttatatataaatcgaaaatggttgatatacaaatcgttt................................................................................................................................................................................................................................................................................................................................................................................................................................ ......................................................................................................................................................................................................................................................................................................................................................................cgatttatatacaaattgaaaacgatttatatataaaacaaaaatggtctgtatataaatcgaaattcatttatatacagatcgttt................................................................................................................................................................................................................................................................................................................................................................................................................................ Subject: NC_002950_PG1606_PG1608|ion transporter:methylmalonyl-CoA decarboxylase, beta subunit|NEGATIVE:NEGATIVE|[1687716,1688774]|1059 HSP 1 e-value: 3.0E-8 bit: 61.9 Len: 63 Query Start:358 Query End:420 Subject Strand: POSITIVE Subject Start: 611 Subject End: 673 .....................................................................................................................................................................................................................................................................................................................................................................tcgatttatatataaattgaaaacgattaatatacagatcgaaaatgatttatatataaatcg......................................................................................................................................................................................................................................................................................................................................................................................................................................................... .....................................................................................................................................................................................................................................................................................................................................................................tcgatttctatatatattgaaaacgatttatatataaatggaaaatggtttatatatagatcg......................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 3.0E-8 bit: 61.9 Len: 51 Query Start:529 Query End:579 Subject Strand: POSITIVE Subject Start: 760 Subject End: 810 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gcttatttagaatcattcaaaactcatcttcgttgttgaaaacttttttgg.......................................................................................................................................................................................................................................................................................... ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gcttatttggaatgattctaaactcctcttcgctgttgaaaacttttttgg.......................................................................................................................................................................................................................................................................................... HSP 3 e-value: 8.0E-6 bit: 54.0 Len: 47 Query Start:398 Query End:444 Subject Strand: POSITIVE Subject Start: 629 Subject End: 675 .............................................................................................................................................................................................................................................................................................................................................................................................................gaaaatgatttatatataaatcgaaaatggttgatatacaaatcgtt................................................................................................................................................................................................................................................................................................................................................................................................................................. .............................................................................................................................................................................................................................................................................................................................................................................................................gaaaacgatttatatataaatggaaaatggtttatatatagatcgtt................................................................................................................................................................................................................................................................................................................................................................................................................................. Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAGAAAGGUAUACAAGCAAAAUUAGGCUUCACCGGAGUUGGUCUUUUUUCUUACAUUUGUGGACUCAACAACUAAAUGCCCUAUAUAUGCUACGACUUCAUAUAACAUCGACAAACAGUAAGGCCGAUUUUGCUAUCCCACAUACCCACUCUCCCAUCGCGAAAGGAGAGAAAAGAACGCUUAUACCUAUGACGAACAAGCAGGAAUAAGGCUAUCAAUAGCCGGACAAAAGCAUAAGGCACGCACCCGAUUCGAGGCUGAAUCAGGUGCGUGCCUUUCUUUUAUCGCCUGUCGAAAGGGCUUUCUUCAUCUACGAUCUAUAUAUAAAUGGUAUGACAAUCUAUAUAGAUAUGGAAAUCGAUUUAUAUAUAAAUUGAAAACGAUUAAUAUACAGAUCGAAAAUGAUUUAUAUAUAAAUCGAAAAUGGUUGAUAUACAAAUCGUUUUUCCAUUUCUUAGAAACCCGAAUCCGAGCUAAAGAAGUUCGUUUUACCACCUUUUGGGGUUCAAAAGGCUCUUACUUUCAGGUGCUUAUUUAGAAUCAUUCAAAACUCAUCUUCGUUGUUGAAAACUUUUUUGGUGCGUAUUUUUCAGUGUUUGCCAUAAGCUCCGGAGAGCAGAGAAAAAGGCCUCCCACGAUUGAUUGUCUUCCUCCCCCUAUCCUACCCCCAAAAAUACCGCUGUAGCUACUUAUCGAUAGUAUGAGUGCGGCUCCGCUCUUGAUGCCGGCAGCAGCCGAAAAAGGGAAUCGUGCUUCAUUAUUUAUUACUUUUGCGCGAUAAUGUUCUCGUGCAGACGCGGCCGAUGACCGGAUCGUGCACAGGAGAAGCAAAAACAUUCUUACAGGAACAAAGCGUACAGU ......(((((...(((((((((.(((((.((.(..((((((((................)))).))))..............((((((.........))))))...........).)).)))))))))))))).......)))))..((((((..........))))))....(.((((((...(((.(((.(((...(((((.....(((((....))))).((.(((((...((((((((((((.((((((....)))))).)))))))))))).))))).)).)))))(....).((((.((((...((((((((..........(((((((...((((...(((.((((((.((((((((((((((((((.....(((((........))))).....)))))))))))))))))).(((((((........))))))).)))))).)))))))..(((.((..((((((.....))))))..))......((((((((......((((((((.(((((.((.((((((...(((.((((.(((((.((((...(((......)))......)))).))...))).)))))))...)))))).)).)))))..)))).....)))).....(((.....)))..................))))))))...(.(((((.(((...((((((.(((..(((.....))).))).))))))..))).))))).).....)))..)))))))...(((((..(..(.(((((((((........))))))))).)..)..)))))..))))))))....)))))))).......)))))).)))....)))))).)... (-239.99) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ ACUGUACGCUUUGUUCCUGUAAGAAUGUUUUUGCUUCUCCUGUGCACGAUCCGGUCAUCGGCCGCGUCUGCACGAGAACAUUAUCGCGCAAAAGUAAUAAAUAAUGAAGCACGAUUCCCUUUUUCGGCUGCUGCCGGCAUCAAGAGCGGAGCCGCACUCAUACUAUCGAUAAGUAGCUACAGCGGUAUUUUUGGGGGUAGGAUAGGGGGAGGAAGACAAUCAAUCGUGGGAGGCCUUUUUCUCUGCUCUCCGGAGCUUAUGGCAAACACUGAAAAAUACGCACCAAAAAAGUUUUCAACAACGAAGAUGAGUUUUGAAUGAUUCUAAAUAAGCACCUGAAAGUAAGAGCCUUUUGAACCCCAAAAGGUGGUAAAACGAACUUCUUUAGCUCGGAUUCGGGUUUCUAAGAAAUGGAAAAACGAUUUGUAUAUCAACCAUUUUCGAUUUAUAUAUAAAUCAUUUUCGAUCUGUAUAUUAAUCGUUUUCAAUUUAUAUAUAAAUCGAUUUCCAUAUCUAUAUAGAUUGUCAUACCAUUUAUAUAUAGAUCGUAGAUGAAGAAAGCCCUUUCGACAGGCGAUAAAAGAAAGGCACGCACCUGAUUCAGCCUCGAAUCGGGUGCGUGCCUUAUGCUUUUGUCCGGCUAUUGAUAGCCUUAUUCCUGCUUGUUCGUCAUAGGUAUAAGCGUUCUUUUCUCUCCUUUCGCGAUGGGAGAGUGGGUAUGUGGGAUAGCAAAAUCGGCCUUACUGUUUGUCGAUGUUAUAUGAAGUCGUAGCAUAUAUAGGGCAUUUAGUUGUUGAGUCCACAAAUGUAAGAAAAAAGACCAACUCCGGUGAAGCCUAAUUUUGCUUGUAUACCUUUCUA ...(.((((((....(((((..((.(((((((.((((((((((((..(((.((((.....)))).))).((.(((........))).))...................))))...(((((......(((((((..(((.......(((....))).....((((.......))))))).)))))))......)))))......))))))))))))))).))..(((..((.(((.(((((((((((..((.((.((((((.((................))..(((((..((((((......))))))...)))))...........)))))).)).))..(((((.((((((((.....))))))))((((..((((...((((.((((((....))))))...)))).(((((((..((((((((((((..........(((((.(((((((.(((......))).))))))).)))))..........)))))))))))).)))))))...........))))..)))).))))).........))))).)))))).)))))..)))(((((((((((((.((((((((((((((((((......))))))))))))))))))...)))))))).(((((....)))))........)))))......)))))...)))))).)....(((((((........))))))).(((((((..(....(((((((.(((.((((((..((((.((((..((((....))))....))))..)))).......((((.(((..................)))))))..)))))).)))..))))))))..)))))))..... (-266.91) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 616 590 541 65 16 NC_002950:PG0995|5end_hypothetical_protein_1055585..1055815_NEGATIVE 576 579 531 66 18 NC_002950:PG0773|5end_hypothetical_protein_825131..825361_POSITIVE 556 579 531 84 36 NC_002950:PG1357|5end_hypothetical_protein_1436458..1436688_NEGATIVE 514 595 551 138 93 NC_002950:PG0609|5end_hypothetical_protein_663183..663413_POSITIVE 506 820 773 215 157 NC_002950:PG0151|5end_signal_recognition_particle-docking_protein_FtsY_174494..174724_NEGATIVE 501 818 773 69 28 NC_002950:PG0927|5end_conserved_hypothetical_protein_TIGR00150_985050..985280_NEGATIVE 464 744 701 66 17 NC_002950:PG0714|5end_copper_homeostasis_protein_CutC_768671..768901_NEGATIVE 438 758 711 91 46 NC_002950:PG1252|5end_hypothetical_protein_1329584..1329814_NEGATIVE 436 620 572 149 105 NC_002950:PG0283|5end_efflux_transporter,_MFP_component,_RND_family_318245..318475_NEGATIVE 425 732 693 47 13 NC_002950:PG1481|5end_conjugative_transposon_protein_TraG_1558447..1558677_NEGATIVE 422 750 703 166 109 NC_002950:PG1815|5end_3-deoxy-manno-octulosonate_cytidylyltransferase_1911433..1911663_NEGATIVE 420 718 675 230 184 NC_002950:PG0468|5end_mannose-6-phosphate_isomerase,_class_I_511384..511614_NEGATIVE 414 278 232 80 34 NC_002950:PG1223|5end_hypothetical_protein_1299461..1299691_POSITIVE 413 398 351 181 135 NC_002950:PG0371|5end_hypothetical_protein_404043..404273_POSITIVE 411 279 231 215 157 NC_002950:PG0364|5end_hypothetical_protein_399615..399845_NEGATIVE 407 290 241 152 98 NC_002950:PG1695|5end_hypothetical_protein_1779440..1779670_POSITIVE 406 738 696 72 10 NC_002950:PG1391|5end_hypothetical_protein_1471670..1471900_POSITIVE 404 749 701 52 18 NC_002950:PG0671|5end_iron_compound_ABC_transporter,_permease_protein_721888..722118_POSITIVE 397 300 254 124 76 NC_002950:PG1363|5end_hypothetical_protein_1443804..1444034_POSITIVE 395 398 351 178 132 NC_002950:PG1574|5end_hypothetical_protein_1652613..1652843_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 597 280 231 60 2 NC_002950:PG1866|3end_hypothetical_protein_1964736..1964886_POSITIVE 576 579 531 59 11 NC_002950:PG0772|3end_hypothetical_protein_825204..825354_POSITIVE 567 429 381 53 5 NC_002950:PG0773|3end_hypothetical_protein_825348..825498_POSITIVE 501 818 773 57 16 NC_002950:PG0928|3end_response_regulator_985062..985212_NEGATIVE 466 589 543 65 19 NC_002950:PG1868|3end_hypothetical_protein_1965098..1965248_NEGATIVE 464 744 701 61 12 NC_002950:PG0715|3end_transporter_768676..768826_NEGATIVE 452 560 513 151 102 NC_002950:PG0995|3end_hypothetical_protein_1055469..1055619_NEGATIVE 449 756 711 79 31 NC_002950:PG1391|3end_hypothetical_protein_1472961..1473111_POSITIVE 438 758 711 78 33 NC_002950:PG1253|3end_DNA_ligase,_NAD-dependent_1329597..1329747_NEGATIVE 425 732 693 50 16 NC_002950:PG1482|3end_conjugative_transposon_protein_TraF_1558444..1558594_NEGATIVE 420 736 691 79 21 NC_002950:PG2126|3end_conserved_hypothetical_protein_TIGR00044_2232438..2232588_NEGATIVE 420 747 706 87 40 NC_002950:PG0320|3end_hypothetical_protein_354577..354727_POSITIVE 418 418 373 52 7 NC_002950:PG0609|3end_hypothetical_protein_663355..663505_POSITIVE 412 566 530 151 115 NC_002950:PG1167|3end_hypothetical_protein_1248644..1248794_POSITIVE 404 749 701 55 21 NC_002950:PG0670|3end_lipoprotein,_putative_721971..722121_POSITIVE 389 280 236 64 18 NC_002950:PG1290|3end_branched-chain_amino_acid_aminotransferase_1369352..1369502_POSITIVE 387 747 703 90 52 NC_002950:PG1254|3end_acetyltransferase,_GNAT_family_1331594..1331744_NEGATIVE 387 599 555 54 1 NC_002950:PG0095|3end_DNA_mismatch_repair_protein_112088..112238_NEGATIVE 386 760 716 107 60 NC_002950:PG1431|3end_DNA-binding_response_regulator,_LuxR_family_1515986..1516136_NEGATIVE 385 738 705 132 95 NC_002950:PG1608|3end_methylmalonyl-CoA_decarboxylase,_beta_subunit_1688685..1688835_NEGATIVE