Origin IGS: cgacaaccatccctactccagaccactgaggaatgatagaggcaagctttcccccacaaatcaaacacaagctccctaccctccccggttcttttcccccacaaaaagaggcgccatcgacgcctcttttttatacccaataaccaccaaatacgcaccaaaaaacttttcaacaacgaagacaagtttggaatcattctaaataaacgcctgaaaagaactccattttgacactcaacagataagcaagcaaatatttttagtccgaaatccgcttttcagcaacccattcaacgatctatatataaagcatttttaatttatatacagatcgttttcgatttatatacaaatcgttttcaataaatatataaatcaaaactcgtttatatataaattgctctctcaaaaaggccatctacgatataataaaaataaggcgtcccttaaaagtccttttaatcatgaaaatctgcaagttccttgctataaatatgagaaaacttgcagatttatcaaaggtcttcgcaaactaatttgctcaatatcagagattaaaaggacttttaagggaccactacataggtatccgatacaaacataaaaaagggctgaccccaaaacttgaagccagcccttaactgaatagcaactaaatagtaaattctccgtgtacttcttcgggggaatcg .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 cgattcccccgaagaagtacacggagaatttactatttagttgctattcagttaagggctggcttcaagttttggggtcagcccttttttatgtttgtatcggatacctatgtagtggtcccttaaaagtccttttaatctctgatattgagcaaattagtttgcgaagacctttgataaatctgcaagttttctcatatttatagcaaggaacttgcagattttcatgattaaaaggacttttaagggacgccttatttttattatatcgtagatggcctttttgagagagcaatttatatataaacgagttttgatttatatatttattgaaaacgatttgtatataaatcgaaaacgatctgtatataaattaaaaatgctttatatatagatcgttgaatgggttgctgaaaagcggatttcggactaaaaatatttgcttgcttatctgttgagtgtcaaaatggagttcttttcaggcgtttatttagaatgattccaaacttgtcttcgttgttgaaaagttttttggtgcgtatttggtggttattgggtataaaaaagaggcgtcgatggcgcctctttttgtgggggaaaagaaccggggagggtagggagcttgtgtttgatttgtgggggaaagcttgcctctatcattcctcagtggtctggagtagggatggttgtcg Mask Tandem Repeat Region ================================================ cgacaaccatccctactccagaccactgaggaatgatagaggcaagctttcccccacaaatcaaacacaagctccctaccctccccggttcttttcccccacaaaaagaggcgccatcgacgcctcttttttatacccaataaccaccaaatacgcaccaaaaaacttttcaacaacgaagacaagtttggaatcattctaaataaacgcctgaaaagaactccattttgacactcaacagataagcaagcaaatatttttagtccgaaatccgcttttcagcaacccattcaacgatctatatataaagcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaactcgtttatatataaattgctctctcaaaaaggccatctacgatataataaaaataaggcgtcccttaaaagtccttttaatcatgaaaatctgcaagttccttgctataaatatgagaaaacttgcagatttatcaaaggtcttcgcaaactaatttgctcaatatcagagattaaaaggacttttaagggaccactacataggtatccgatacaaacataaaaaagggctgaccccaaaacttgaagccagcccttaactgaatagcaactaaatagtaaattctccgtgtacttcttcgggggaatcg Find is-nt database================================================ Query_seq: PG1119:PG1121|PG1119:PG1121:flavodoxin, putative:asparaginyl-tRNA synthetase:-><-:1195544..1196235 692 cgacaaccatccctactccagaccactgaggaatgatagaggcaagctttcccccacaaatcaaacacaagctccctaccctccccggttcttttcccccacaaaaagaggcgccatcgacgcctcttttttatacccaataaccaccaaatacgcaccaaaaaacttttcaacaacgaagacaagtttggaatcattctaaataaacgcctgaaaagaactccattttgacactcaacagataagcaagcaaatatttttagtccgaaatccgcttttcagcaacccattcaacgatctatatataaagcatttttaatttatatacagatcgttttcgatttatatacaaatcgttttcaataaatatataaatcaaaactcgtttatatataaattgctctctcaaaaaggccatctacgatataataaaaataaggcgtcccttaaaagtccttttaatcatgaaaatctgcaagttccttgctataaatatgagaaaacttgcagatttatcaaaggtcttcgcaaactaatttgctcaatatcagagattaaaaggacttttaagggaccactacataggtatccgatacaaacataaaaaagggctgaccccaaaacttgaagccagcccttaactgaatagcaactaaatagtaaattctccgtgtacttcttcgggggaatcg Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PG1119:PG1121|PG1119:PG1121:flavodoxin, putative:asparaginyl-tRNA synthetase:-><-:1195544..1196235 692 cgacaaccatccctactccagaccactgaggaatgatagaggcaagctttcccccacaaatcaaacacaagctccctaccctccccggttcttttcccccacaaaaagaggcgccatcgacgcctcttttttatacccaataaccaccaaatacgcaccaaaaaacttttcaacaacgaagacaagtttggaatcattctaaataaacgcctgaaaagaactccattttgacactcaacagataagcaagcaaatatttttagtccgaaatccgcttttcagcaacccattcaacgatctatatataaagcatttttaatttatatacagatcgttttcgatttatatacaaatcgttttcaataaatatataaatcaaaactcgtttatatataaattgctctctcaaaaaggccatctacgatataataaaaataaggcgtcccttaaaagtccttttaatcatgaaaatctgcaagttccttgctataaatatgagaaaacttgcagatttatcaaaggtcttcgcaaactaatttgctcaatatcagagattaaaaggacttttaagggaccactacataggtatccgatacaaacataaaaaagggctgaccccaaaacttgaagccagcccttaactgaatagcaactaaatagtaaattctccgtgtacttcttcgggggaatcg Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PG1119:PG1121|PG1119:PG1121:flavodoxin, putative:asparaginyl-tRNA synthetase:-><-:1195544..1196235 692 cgacaaccatccctactccagaccactgaggaatgatagaggcaagctttcccccacaaatcaaacacaagctccctaccctccccggttcttttcccccacaaaaagaggcgccatcgacgcctcttttttatacccaataaccaccaaatacgcaccaaaaaacttttcaacaacgaagacaagtttggaatcattctaaataaacgcctgaaaagaactccattttgacactcaacagataagcaagcaaatatttttagtccgaaatccgcttttcagcaacccattcaacgatctatatataaagcatttttaatttatatacagatcgttttcgatttatatacaaatcgttttcaataaatatataaatcaaaactcgtttatatataaattgctctctcaaaaaggccatctacgatataataaaaataaggcgtcccttaaaagtccttttaatcatgaaaatctgcaagttccttgctataaatatgagaaaacttgcagatttatcaaaggtcttcgcaaactaatttgctcaatatcagagattaaaaggacttttaagggaccactacataggtatccgatacaaacataaaaaagggctgaccccaaaacttgaagccagcccttaactgaatagcaactaaatagtaaattctccgtgtacttcttcgggggaatcg Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 cgacaaccatccctactccagaccactgaggaatgatagaggcaagctttcccccacaaatcaaacacaagctccctaccctccccggttcttttcccccacaaaaagaggcgccatcgacgcctcttttttatacccaataaccaccaaatacgcaccaaaaaacttttcaacaacgaagacaagtttggaatcattctaaataaacgcctgaaaagaactccattttgacactcaacagataagcaagcaaatatttttagtccgaaatccgcttttcagcaacccattcaacgatctatatataaagcatttttaatttatatacagatcgttttcgatttatatacaaatcgttttcaataaatatataaatcaaaactcgtttatatataaattgctctctcaaaaaggccatctacgatataataaaaataaggcgtcccttaaaagtccttttaatcatgaaaatctgcaagttccttgctataaatatgagaaaacttgcagatttatcaaaggtcttcgcaaactaatttgctcaatatcagagattaaaaggacttttaagggaccactacataggtatccgatacaaacataaaaaagggctgaccccaaaacttgaagccagcccttaactgaatagcaactaaatagtaaattctccgtgtacttcttcgggggaatcg Predict ORF larger than 30AA ================================================ Protein_Len: 36 Strand: + Start: 33 End: 140 ................................ M I E A S F P P Q I K H K L P T L P G S F P P Q K E A P S T P L F Y T Q ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 58 Strand: + Start: 26 End: 199 ......................... M R N D R G K L S P T N Q T Q A P Y P P R F F S P T K R G A I D A S F L Y P I T T K Y A P K N F S T T K T S L E S F ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 32 Strand: + Start: 133 End: 228 .................................................................................................................................... M P N N H Q I R T K K L F N N E D K F G I I L N K R L K R T P F ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 36 Strand: + Start: 256 End: 363 ............................................................................................................................................................................................................................................................... M F S P K S A F Q Q P I Q R S I Y K A F L I Y I Q I V F D L Y T N R F Q ......................................................................................................................................................................................................................................................................................................................................... Protein_Len: 53 Strand: + Start: 375 End: 533 ...................................................................................................................................................................................................................................................................................................................................................................................... M K T R L Y I N C S L K K A I Y D I I K I R R P L K V L L I M K I C K F L A I N M R K L A D L S K V F A N ............................................................................................................................................................... Protein_Len: 60 Strand: + Start: 323 End: 601 .................................................................................................................................................................................................................................................................................................................................. M Y R S F S I Y I Q I V F N K Y I N Q N S F I Y K L L S Q K G H L R Y N K N K A S L K S P F N H E N L Q V P C Y K Y E K ........................................................................................... Protein_Len: 32 Strand: - Start: 570 End: 665 ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... P V V V Y T D S V F M F F P Q G W F K F G A R L Q I A V L Y Y M ........................... Protein_Len: 60 Strand: - Start: 490 End: 690 ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... N I L P R R L S I Q E I D S I L L V K L P G S C L Y G I C V Y F L A S G L V Q L W G K V S Y C S F L L N E T Y K K P P M .. Protein_Len: 39 Strand: - Start: 302 End: 418 ............................................................................................................................................................................................................................................................................................................. I Y L M K L K Y V S R K R N I Y L D N E I F I Y I L V R K Y I F Q E R L F A M .................................................................................................................................................................................................................................................................................. Protein_Len: 60 Strand: - Start: 3 End: 257 .. G E G T R K G W L F L R W R R R K K I G L L W W I R V L F S K L L S S L N P I M R F L R R F L V G N Q C E V S L C A F M ................................................................................................................................................................................................................................................................................................................................................................................................................................................... cgacaaccatccctactccagaccactgaggaatgatagaggcaagctttcccccacaaatcaaacacaagctccctaccctccccggttcttttcccccacaaaaagaggcgccatcgacgcctcttttttatacccaataaccaccaaatacgcaccaaaaaacttttcaacaacgaagacaagtttggaatcattctaaataaacgcctgaaaagaactccattttgacactcaacagataagcaagcaaatatttttagtccgaaatccgcttttcagcaacccattcaacgatctatatataaagcatttttaatttatatacagatcgttttcgatttatatacaaatcgttttcaataaatatataaatcaaaactcgtttatatataaattgctctctcaaaaaggccatctacgatataataaaaataaggcgtcccttaaaagtccttttaatcatgaaaatctgcaagttccttgctataaatatgagaaaacttgcagatttatcaaaggtcttcgcaaactaatttgctcaatatcagagattaaaaggacttttaagggaccactacataggtatccgatacaaacataaaaaagggctgaccccaaaacttgaagccagcccttaactgaatagcaactaaatagtaaattctccgtgtacttcttcgggggaatcg Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ PromScan Matrix: RpoN Strand: - Score: 81 Start: 474 End: 490 .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCAAGGAACTTGCA.......................................................................................................................................................................................................... cgacaaccatccctactccagaccactgaggaatgatagaggcaagctttcccccacaaatcaaacacaagctccctaccctccccggttcttttcccccacaaaaagaggcgccatcgacgcctcttttttatacccaataaccaccaaatacgcaccaaaaaacttttcaacaacgaagacaagtttggaatcattctaaataaacgcctgaaaagaactccattttgacactcaacagataagcaagcaaatatttttagtccgaaatccgcttttcagcaacccattcaacgatctatatataaagcatttttaatttatatacagatcgttttcgatttatatacaaatcgttttcaataaatatataaatcaaaactcgtttatatataaattgctctctcaaaaaggccatctacgatataataaaaataaggcgtcccttaaaagtccttttaatcatgaaaatctgcaagttccttgctataaatatgagaaaacttgcagatttatcaaaggtcttcgcaaactaatttgctcaatatcagagattaaaaggacttttaagggaccactacataggtatccgatacaaacataaaaaagggctgaccccaaaacttgaagccagcccttaactgaatagcaactaaatagtaaattctccgtgtacttcttcgggggaatcg Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 100 HP_score: -12.4 Tail_Score: -4.82901 Start: 108 End: 126 Full_Region: attgggtataaaaaa gaggcgtc gat ggcgcctc tttttgtgggggaaa ...........................................................................................................gaggcgtcgatggcgcctc...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 100 HP_score: -10.2 Tail_Score: -5.24531 Start: 108 End: 126 Full_Region: TTTCCCCCACAAAAA GAGGCGCC ATC GACGCCTC TTTTTTATACCCAAT ...........................................................................................................GAGGCGCCATCGACGCCTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 74 HP_score: -9.6 Tail_Score: -3.10409 Start: 295 End: 334 Full_Region: tatataaatcgaaaa cgatctgtatataaatta aaaa tgctttatatatagatcg ttgaatgggttgctg ......................................................................................................................................................................................................................................................................................................cgatctgtatataaattaaaaatgctttatatatagatcg...................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 70 HP_score: -5.3 Tail_Score: -4.41177 Start: 295 End: 334 Full_Region: CAGCAACCCATTCAA CGATCTATATATAAA GCATTTTTAA TTTATATACAGATCG TTTTCGATTTATATA ......................................................................................................................................................................................................................................................................................................CGATCTATATATAAAGCATTTTTAATTTATATACAGATCG...................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 86 HP_score: -5.3 Tail_Score: -5.25699 Start: 436 End: 449 Full_Region: gattaaaaggacttt taagg gacg cctta tttttattatatcgt ...................................................................................................................................................................................................................................................................................................................................................................................................................................................taagggacgcctta................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 100 HP_score: -13.9 Tail_Score: -5.59879 Start: 609 End: 637 Full_Region: ttgctattcagttaa gggctggcttcaa gtt ttggggtcagccc ttttttatgtttgta ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gggctggcttcaagttttggggtcagccc....................................................... Find igs database================================================ Query_seq: PG1119:PG1121|PG1119:PG1121:flavodoxin, putative:asparaginyl-tRNA synthetase:-><-:1195544..1196235 692 cgacaaccatccctactccagaccactgaggaatgatagaggcaagctttcccccacaaatcaaacacaagctccctaccctccccggttcttttcccccacaaaaagaggcgccatcgacgcctcttttttatacccaataaccaccaaatacgcaccaaaaaacttttcaacaacgaagacaagtttggaatcattctaaataaacgcctgaaaagaactccattttgacactcaacagataagcaagcaaatatttttagtccgaaatccgcttttcagcaacccattcaacgatctatatataaagcatttttaatttatatacagatcgttttcgatttatatacaaatcgttttcaataaatatataaatcaaaactcgtttatatataaattgctctctcaaaaaggccatctacgatataataaaaataaggcgtcccttaaaagtccttttaatcatgaaaatctgcaagttccttgctataaatatgagaaaacttgcagatttatcaaaggtcttcgcaaactaatttgctcaatatcagagattaaaaggacttttaagggaccactacataggtatccgatacaaacataaaaaagggctgaccccaaaacttgaagccagcccttaactgaatagcaactaaatagtaaattctccgtgtacttcttcgggggaatcg Intra-Species Hit: Count: 14 Min: 1 Max: 692 Len: 692 Subject: NC_002950_PG1119_PG1121|flavodoxin, putative:asparaginyl-tRNA synthetase|POSITIVE:NEGATIVE|[1195544,1196235]|692 HSP 1 e-value: 0.0 bit: 1372.0 Len: 692 Query Start:1 Query End:692 Subject Strand: POSITIVE Subject Start: 1 Subject End: 692 cgacaaccatccctactccagaccactgaggaatgatagaggcaagctttcccccacaaatcaaacacaagctccctaccctccccggttcttttcccccacaaaaagaggcgccatcgacgcctcttttttatacccaataaccaccaaatacgcaccaaaaaacttttcaacaacgaagacaagtttggaatcattctaaataaacgcctgaaaagaactccattttgacactcaacagataagcaagcaaatatttttagtccgaaatccgcttttcagcaacccattcaacgatctatatataaagcatttttaatttatatacagatcgttttcgatttatatacaaatcgttttcaataaatatataaatcaaaactcgtttatatataaattgctctctcaaaaaggccatctacgatataataaaaataaggcgtcccttaaaagtccttttaatcatgaaaatctgcaagttccttgctataaatatgagaaaacttgcagatttatcaaaggtcttcgcaaactaatttgctcaatatcagagattaaaaggacttttaagggaccactacataggtatccgatacaaacataaaaaagggctgaccccaaaacttgaagccagcccttaactgaatagcaactaaatagtaaattctccgtgtacttcttcgggggaatcg cgacaaccatccctactccagaccactgaggaatgatagaggcaagctttcccccacaaatcaaacacaagctccctaccctccccggttcttttcccccacaaaaagaggcgccatcgacgcctcttttttatacccaataaccaccaaatacgcaccaaaaaacttttcaacaacgaagacaagtttggaatcattctaaataaacgcctgaaaagaactccattttgacactcaacagataagcaagcaaatatttttagtccgaaatccgcttttcagcaacccattcaacgatctatatataaagcatttttaatttatatacagatcgttttcgatttatatacaaatcgttttcaataaatatataaatcaaaactcgtttatatataaattgctctctcaaaaaggccatctacgatataataaaaataaggcgtcccttaaaagtccttttaatcatgaaaatctgcaagttccttgctataaatatgagaaaacttgcagatttatcaaaggtcttcgcaaactaatttgctcaatatcagagattaaaaggacttttaagggaccactacataggtatccgatacaaacataaaaaagggctgaccccaaaacttgaagccagcccttaactgaatagcaactaaatagtaaattctccgtgtacttcttcgggggaatcg Subject: NC_002950_PG1889_PG1890|hypothetical protein:lipoprotein, putative|POSITIVE:POSITIVE|[1987151,1987704]|554 HSP 1 e-value: 3.0E-23 bit: 111.0 Len: 80 Query Start:294 Query End:373 Subject Strand: NEGATIVE Subject Start: 159 Subject End: 238 .....................................................................................................................................................................................................................................................................................................acgatctatatataaagcatttttaatttatatacagatcgttttcgatttatatacaaatcgttttcaataaatatata............................................................................................................................................................................................................................................................................................................................... .....................................................................................................................................................................................................................................................................................................acgatctgtatataaaccattttcaatttatatatagatcgttttcaatttatatataaatcgttttcaataaatatata............................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 4.0E-7 bit: 58.0 Len: 49 Query Start:158 Query End:206 Subject Strand: NEGATIVE Subject Start: 327 Subject End: 375 .............................................................................................................................................................ccaaaaaacttttcaacaacgaagacaagtttggaatcattctaaataa...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .............................................................................................................................................................ccaaaaaagttttcaacaatgaagacgagcttagaatcattctaaataa...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: NC_002950_PG0994_PG0995|hypothetical protein:hypothetical protein|POSITIVE:NEGATIVE|[1055160,1055558]|399 HSP 1 e-value: 2.0E-21 bit: 105.0 Len: 109 Query Start:293 Query End:401 Subject Strand: NEGATIVE Subject Start: 235 Subject End: 343 ....................................................................................................................................................................................................................................................................................................aacgatctatatataaagcatttttaatttatatacagatcgttttcgatttatatacaaatcgttttcaataaatatataaatcaaaactcgtttatatataaattgc................................................................................................................................................................................................................................................................................................... ....................................................................................................................................................................................................................................................................................................aacgatttatatataaaccattttcaatttatatatagattgttttagatttatatataaaacgttttcaataaatatatagatcataaatgatttatacataaattgc................................................................................................................................................................................................................................................................................................... Subject: NC_002950_PG0903_PG0906|hypothetical protein:lipoprotein, putative|NEGATIVE:POSITIVE|[969731,970755]|1025 HSP 1 e-value: 5.0E-19 bit: 97.6 Len: 105 Query Start:294 Query End:398 Subject Strand: POSITIVE Subject Start: 397 Subject End: 501 .....................................................................................................................................................................................................................................................................................................acgatctatatataaagcatttttaatttatatacagatcgttttcgatttatatacaaatcgttttcaataaatatataaatcaaaactcgtttatatataaat...................................................................................................................................................................................................................................................................................................... .....................................................................................................................................................................................................................................................................................................acgatttatatataaatcatttttgatttgtatataaaacgatttcgatttatatataaatggttttcaataaatatataaatcaaaagtgatttgtatataaat...................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 2.0E-12 bit: 75.8 Len: 62 Query Start:160 Query End:221 Subject Strand: POSITIVE Subject Start: 263 Subject End: 324 ...............................................................................................................................................................aaaaaacttttcaacaacgaagacaagtttggaatcattctaaataaacgcctgaaaagaac....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ...............................................................................................................................................................aaaaaagttttcaacaacgaagacgagtttggaatgattctaaataagcgcttaaaaagaac....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: NC_002950_PG1866_PG1868|hypothetical protein:hypothetical protein|POSITIVE:NEGATIVE|[1964797,1965187]|391 HSP 1 e-value: 5.0E-13 bit: 77.8 Len: 43 Query Start:319 Query End:361 Subject Strand: NEGATIVE Subject Start: 153 Subject End: 195 ..............................................................................................................................................................................................................................................................................................................................atttatatacagatcgttttcgatttatatacaaatcgttttc........................................................................................................................................................................................................................................................................................................................................... ..............................................................................................................................................................................................................................................................................................................................atttatatacagatcgttttcgttttatatacaaatcgttttc........................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 3.0E-11 bit: 71.9 Len: 56 Query Start:161 Query End:216 Subject Strand: NEGATIVE Subject Start: 298 Subject End: 353 ................................................................................................................................................................aaaaacttttcaacaacgaagacaagtttggaatcattctaaataaacgcctgaaa............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ ................................................................................................................................................................aaaaagttttcaacaacgaagacgagtttggaatcattccaaataagcacctgaaa............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Subject: NC_002950_PG0022_PG0024|sulfate permease family protein:redox-sensing transcriptional repressor Rex|NEGATIVE:POSITIVE|[26887,27871]|985 HSP 1 e-value: 5.0E-13 bit: 77.8 Len: 67 Query Start:295 Query End:361 Subject Strand: POSITIVE Subject Start: 370 Subject End: 436 ......................................................................................................................................................................................................................................................................................................cgatctatatataaagcatttttaatttatatacagatcgttttcgatttatatacaaatcgttttc........................................................................................................................................................................................................................................................................................................................................... ......................................................................................................................................................................................................................................................................................................cgatgtatatattaatcagtttcaatttatatacagatcgttttcgatttatatataaatcattttc........................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 4.0E-10 bit: 67.9 Len: 50 Query Start:157 Query End:206 Subject Strand: POSITIVE Subject Start: 232 Subject End: 281 ............................................................................................................................................................accaaaaaacttttcaacaacgaagacaagtttggaatcattctaaataa...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ............................................................................................................................................................accagaaaagttttcaacaacgaagaagagtttggaatcattctaaataa...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: NC_002950_PG1145_PG1148|long-chain-fatty-acid--CoA ligase, putative:hypothetical protein|NEGATIVE:POSITIVE|[1230396,1231343]|948 HSP 1 e-value: 7.0E-12 bit: 73.8 Len: 69 Query Start:147 Query End:215 Subject Strand: NEGATIVE Subject Start: 830 Subject End: 898 ..................................................................................................................................................ccaaatacgcaccaaaaaacttttcaacaacgaagacaagtttggaatcattctaaataaacgcctgaa............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ..................................................................................................................................................ccaaatacgagccaaaaaagttttcaacaacgaagacgagtttggaatgattccaaataagcacctgaa............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. HSP 2 e-value: 4.0E-7 bit: 58.0 Len: 57 Query Start:293 Query End:349 Subject Strand: NEGATIVE Subject Start: 696 Subject End: 752 ....................................................................................................................................................................................................................................................................................................aacgatctatatataaagcatttttaatttatatacagatcgttttcgatttatata....................................................................................................................................................................................................................................................................................................................................................... ....................................................................................................................................................................................................................................................................................................aacgatttatatataaatcatttgcaataaatatacagatcgttttccatttatata....................................................................................................................................................................................................................................................................................................................................................... Subject: NC_002950_PG0404_PG0408|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[440197,441041]|845 HSP 1 e-value: 7.0E-12 bit: 73.8 Len: 81 Query Start:293 Query End:373 Subject Strand: NEGATIVE Subject Start: 462 Subject End: 542 ....................................................................................................................................................................................................................................................................................................aacgatctatatataaagcatttttaatttatatacagatcgttttcgatttatatacaaatcgttttcaataaatatata............................................................................................................................................................................................................................................................................................................................... ....................................................................................................................................................................................................................................................................................................aacgatttgtatataaatgactttcaatttatatataaatggttttcgttttatatataaatcgttttcaataaatatata............................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 3.0E-11 bit: 71.9 Len: 52 Query Start:155 Query End:206 Subject Strand: NEGATIVE Subject Start: 629 Subject End: 680 ..........................................................................................................................................................gcaccaaaaaacttttcaacaacgaagacaagtttggaatcattctaaataa...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ..........................................................................................................................................................gcaccaaaaaagttttcaacaacgaagacgagtttggaatgattccaaataa...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: NC_002950_PG1743_PG1745|2-dehydro-3-deoxyphosphooctonate aldolase:phosphoribulokinase family protein|NEGATIVE:NEGATIVE|[1828439,1829524]|1086 HSP 1 e-value: 4.0E-10 bit: 67.9 Len: 102 Query Start:297 Query End:398 Subject Strand: POSITIVE Subject Start: 417 Subject End: 518 ........................................................................................................................................................................................................................................................................................................atctatatataaagcatttttaatttatatacagatcgttttcgatttatatacaaatcgttttcaataaatatataaatcaaaactcgtttatatataaat...................................................................................................................................................................................................................................................................................................... ........................................................................................................................................................................................................................................................................................................atctatatattaatcatttttgatttatatataaatcgttttcattttgtatataaatgattttcaataaatatatagatcgaaaatgatttgtatataaat...................................................................................................................................................................................................................................................................................................... Subject: NC_002950_PG1574_PG1576|hypothetical protein:L-aspartate oxidase|NEGATIVE:POSITIVE|[1652704,1653155]|452 HSP 1 e-value: 4.0E-10 bit: 67.9 Len: 82 Query Start:292 Query End:373 Subject Strand: NEGATIVE Subject Start: 9 Subject End: 90 ...................................................................................................................................................................................................................................................................................................caacgatctatatataaagcatttttaatttatatacagatcgttttcgatttatatacaaatcgttttcaataaatatata............................................................................................................................................................................................................................................................................................................................... ...................................................................................................................................................................................................................................................................................................caacgatttgtatataaagcgttttcaatttgtatacaaatcgttttcattttatatttaaatcgtttttgataaatatata............................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 4.0E-7 bit: 58.0 Len: 49 Query Start:158 Query End:206 Subject Strand: NEGATIVE Subject Start: 176 Subject End: 224 .............................................................................................................................................................ccaaaaaacttttcaacaacgaagacaagtttggaatcattctaaataa...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .............................................................................................................................................................ccaaaaaagttttcaacaacgaagacgagtttggaacgattccaaataa...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: NC_002950_PG1167_PG1169|hypothetical protein:hypothetical protein|POSITIVE:NEGATIVE|[1248705,1249172]|468 HSP 1 e-value: 4.0E-10 bit: 67.9 Len: 106 Query Start:293 Query End:398 Subject Strand: POSITIVE Subject Start: 62 Subject End: 167 ....................................................................................................................................................................................................................................................................................................aacgatctatatataaagcatttttaatttatatacagatcgttttcgatttatatacaaatcgttttcaataaatatataaatcaaaactcgtttatatataaat...................................................................................................................................................................................................................................................................................................... ....................................................................................................................................................................................................................................................................................................aacgatctgtatataaaccgttttcgatctatatatagatcgttttcgttttatatataaatcgttttccatttatatatagatcggaagtcttttctatataaat...................................................................................................................................................................................................................................................................................................... Subject: NC_002950_PG0094_PG0095|outer membrane efflux protein, putative:DNA mismatch repair protein|NEGATIVE:NEGATIVE|[111284,112177]|894 HSP 1 e-value: 2.0E-9 bit: 65.9 Len: 49 Query Start:158 Query End:206 Subject Strand: NEGATIVE Subject Start: 781 Subject End: 829 .............................................................................................................................................................ccaaaaaacttttcaacaacgaagacaagtttggaatcattctaaataa...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .............................................................................................................................................................ccaaaaaagttttcaacaacgaagacgagcttggaatcattccaaataa...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 4.0E-7 bit: 58.0 Len: 85 Query Start:293 Query End:377 Subject Strand: NEGATIVE Subject Start: 654 Subject End: 738 ....................................................................................................................................................................................................................................................................................................aacgatctatatataaagcatttttaatttatatacagatcgttttcgatttatatacaaatcgttttcaataaatatataaatc........................................................................................................................................................................................................................................................................................................................... ....................................................................................................................................................................................................................................................................................................aacgatctgtatataaatgaatttcgatttatatacagaccatttttgttttatatataaatcgttttcaatttgtatataaatc........................................................................................................................................................................................................................................................................................................................... Subject: NC_002950_PG1013_PG1014|acetyl-CoA hydrolase/transferase family protein:TPR domain protein|POSITIVE:POSITIVE|[1073371,1073902]|532 HSP 1 e-value: 3.0E-8 bit: 61.9 Len: 59 Query Start:158 Query End:216 Subject Strand: NEGATIVE Subject Start: 323 Subject End: 381 .............................................................................................................................................................ccaaaaaacttttcaacaacgaagacaagtttggaatcattctaaataaacgcctgaaa............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ .............................................................................................................................................................ccaaaaaagttttcaacaatgaagagaagtttggaatggttctaaataagcgactgaaa............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ HSP 2 e-value: 7.0E-6 bit: 54.0 Len: 39 Query Start:335 Query End:373 Subject Strand: NEGATIVE Subject Start: 188 Subject End: 226 ..............................................................................................................................................................................................................................................................................................................................................ttttcgatttatatacaaatcgttttcaataaatatata............................................................................................................................................................................................................................................................................................................................... ..............................................................................................................................................................................................................................................................................................................................................ttttcgatttatatataaatcgttttcatttaatatata............................................................................................................................................................................................................................................................................................................................... Subject: NC_002950_PG0965_PG0968|phosphatidylserine decarboxylase:Mrr restriction system protein|NEGATIVE:POSITIVE|[1025867,1026967]|1101 HSP 1 e-value: 3.0E-8 bit: 61.9 Len: 47 Query Start:160 Query End:206 Subject Strand: NEGATIVE Subject Start: 776 Subject End: 822 ...............................................................................................................................................................aaaaaacttttcaacaacgaagacaagtttggaatcattctaaataa...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ...............................................................................................................................................................aaaaaagttttcaacaacgaagatgagtttggaatcattccaaataa...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 2.0E-6 bit: 56.0 Len: 76 Query Start:323 Query End:398 Subject Strand: NEGATIVE Subject Start: 584 Subject End: 659 ..................................................................................................................................................................................................................................................................................................................................atatacagatcgttttcgatttatatacaaatcgttttcaataaatatataaatcaaaactcgtttatatataaat...................................................................................................................................................................................................................................................................................................... ..................................................................................................................................................................................................................................................................................................................................atatatagttcgtttgcgatttgtatataaatcgttttcaatttatacatagatcgaaactcatttctatataaat...................................................................................................................................................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ CGACAACCAUCCCUACUCCAGACCACUGAGGAAUGAUAGAGGCAAGCUUUCCCCCACAAAUCAAACACAAGCUCCCUACCCUCCCCGGUUCUUUUCCCCCACAAAAAGAGGCGCCAUCGACGCCUCUUUUUUAUACCCAAUAACCACCAAAUACGCACCAAAAAACUUUUCAACAACGAAGACAAGUUUGGAAUCAUUCUAAAUAAACGCCUGAAAAGAACUCCAUUUUGACACUCAACAGAUAAGCAAGCAAAUAUUUUUAGUCCGAAAUCCGCUUUUCAGCAACCCAUUCAACGAUCUAUAUAUAAAGCAUUUUUAAUUUAUAUACAGAUCGUUUUCGAUUUAUAUACAAAUCGUUUUCAAUAAAUAUAUAAAUCAAAACUCGUUUAUAUAUAAAUUGCUCUCUCAAAAAGGCCAUCUACGAUAUAAUAAAAAUAAGGCGUCCCUUAAAAGUCCUUUUAAUCAUGAAAAUCUGCAAGUUCCUUGCUAUAAAUAUGAGAAAACUUGCAGAUUUAUCAAAGGUCUUCGCAAACUAAUUUGCUCAAUAUCAGAGAUUAAAAGGACUUUUAAGGGACCACUACAUAGGUAUCCGAUACAAACAUAAAAAAGGGCUGACCCCAAAACUUGAAGCCAGCCCUUAACUGAAUAGCAACUAAAUAGUAAAUUCUCCGUGUACUUCUUCGGGGGAAUCG ...................(((..((((.(((..(.(((.((..(((((...................)))))))))))..))).))))))).(((((((..(((((((((((.......)))))))))))....................(((((.(((((....(((((......)))))....)))))....((((.........(((((...(((...((.((((((...((....))......(((((.............((((...(((....))).........((((((((.((((((((..........)))))))).))))))))..((((((......)))))).)))).....((((((((((........))))))))))...)))))...)))))).))...))).................((..(((((((((((((((((((((((.((((((((((((((((.(((...........)))..))))))))))))).))).........(((((....)))))...........)))))))))))))))))))))))..))...)))))...................((((((((.(..((.....))..).))))))))....)))).......................))))).......)))))))... (-168.01) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ CGAUUCCCCCGAAGAAGUACACGGAGAAUUUACUAUUUAGUUGCUAUUCAGUUAAGGGCUGGCUUCAAGUUUUGGGGUCAGCCCUUUUUUAUGUUUGUAUCGGAUACCUAUGUAGUGGUCCCUUAAAAGUCCUUUUAAUCUCUGAUAUUGAGCAAAUUAGUUUGCGAAGACCUUUGAUAAAUCUGCAAGUUUUCUCAUAUUUAUAGCAAGGAACUUGCAGAUUUUCAUGAUUAAAAGGACUUUUAAGGGACGCCUUAUUUUUAUUAUAUCGUAGAUGGCCUUUUUGAGAGAGCAAUUUAUAUAUAAACGAGUUUUGAUUUAUAUAUUUAUUGAAAACGAUUUGUAUAUAAAUCGAAAACGAUCUGUAUAUAAAUUAAAAAUGCUUUAUAUAUAGAUCGUUGAAUGGGUUGCUGAAAAGCGGAUUUCGGACUAAAAAUAUUUGCUUGCUUAUCUGUUGAGUGUCAAAAUGGAGUUCUUUUCAGGCGUUUAUUUAGAAUGAUUCCAAACUUGUCUUCGUUGUUGAAAAGUUUUUUGGUGCGUAUUUGGUGGUUAUUGGGUAUAAAAAAGAGGCGUCGAUGGCGCCUCUUUUUGUGGGGGAAAAGAACCGGGGAGGGUAGGGAGCUUGUGUUUGAUUUGUGGGGGAAAGCUUGCCUCUAUCAUUCCUCAGUGGUCUGGAGUAGGGAUGGUUGUCG ...((((((((.....((((.((((((((((....((((((..(((((((...((((((((((((((.....)))))))))))))).....((((((((...((((...(((..(((.((((((((((((((((((((((...........(((((....))))).........(((.(((((((((((((((....((....))....)))))))))))))))))).)))))))))))))))))))))))))..)))...)))).....((((((.(((((.....))).)).)))))).))))))))..(((((((((((((((..((((....))))..)))))))))))))))((((((((((((((((.((....)).)))))))))))))))))))))))...))))))....(((..(((..((((..(((..((((((....((((((.........))))))........))))))..)))))))..))).))).....................)))))))))))))).((((..((....))..))))..((((((((((((.....)))))))))))).))))))))...(((((((((((((((((.((..((.(((..(.....)..))).))..))))))))).))))))....((((.......)))))))).... (-222.50) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 667 550 501 175 126 NC_002950:PG0461|5end_ISPg7,_transposase_504746..504976_NEGATIVE 543 200 151 227 178 NC_002950:PG0996|5end_conserved_hypothetical_protein_TIGR01777_1055592..1055822_POSITIVE 512 220 171 215 166 NC_002950:PG1148|5end_hypothetical_protein_1231204..1231434_POSITIVE 460 339 293 122 76 NC_002950:PG1222|5end_hypothetical_protein_1299392..1299622_NEGATIVE 426 200 154 231 185 NC_002950:PG1166|5end_hypothetical_protein_1248443..1248673_NEGATIVE 369 120 72 60 7 NC_002950:PG1426|5end_hypothetical_protein_1511310..1511540_NEGATIVE 341 126 82 214 163 NC_002950:PG1498|5end_hypothetical_protein_1574656..1574886_POSITIVE 339 637 600 88 48 NC_002950:PG1143|5end_sugar_dehydrogenase,_UDP-glucose/GDP-mannose_dehydrogenase_family_1227198..1227428_NEGATIVE 338 119 71 67 12 NC_002950:PG0930|5end_hypothetical_protein_987542..987772_NEGATIVE 333 124 85 65 19 NC_002950:PG1230|5end_hypothetical_protein_1308068..1308298_NEGATIVE 330 88 41 213 164 NC_002950:PG0987|5end_hypothetical_protein_1048002..1048232_POSITIVE 316 97 55 225 173 NC_002950:PG1163|5end_cobyrinic_acid_a,c-diamide_synthase_1243381..1243611_NEGATIVE 314 113 71 73 29 NC_002950:PG0546|5end_hypothetical_protein_600391..600621_NEGATIVE 313 128 84 191 134 NC_002950:PG2209|5end_hypothetical_protein_2320928..2321158_NEGATIVE 313 119 71 217 169 NC_002950:PG1696|5end_type_II_DNA_modification_methyltransferase,_putative_1779973..1780203_POSITIVE 312 88 42 78 18 NC_002950:PG0362|5end_hypothetical_protein_395301..395531_POSITIVE 311 124 83 47 4 NC_002950:PG2106|5end_hypothetical_protein_2214694..2214924_POSITIVE 310 360 319 167 120 NC_002950:PG1223|5end_hypothetical_protein_1299461..1299691_POSITIVE 310 90 42 218 147 NC_002950:PG0018|5end_hypothetical_protein_19648..19878_POSITIVE 309 126 84 200 150 NC_002950:PG0213|5end_precorrin-3_methylase/precorrin-8X_methylmutase_250464..250694_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 637 510 461 50 1 NC_002950:PG1061|3end_ISPg6,_transposase_1128730..1128880_NEGATIVE 595 550 506 45 1 NC_002950:PG0462|3end_transporter,_putative_504876..505026_NEGATIVE 436 640 591 57 8 NC_002950:PG0541|3end_hypothetical_protein_595136..595286_POSITIVE 389 638 600 61 19 NC_002950:PG1321|3end_formate--tetrahydrofolate_ligase_1399656..1399806_NEGATIVE 380 356 319 44 7 NC_002950:PG0773|3end_hypothetical_protein_825348..825498_POSITIVE 363 125 81 48 4 NC_002950:PG0340|3end_hypothetical_protein_376436..376586_POSITIVE 359 640 608 57 25 NC_002950:PG0435|3end_capsular_polysaccharide_biosythesis_protein,_putative_472708..472858_NEGATIVE 348 119 71 74 25 NC_002950:PG2037|3end_hypothetical_protein_2137591..2137741_NEGATIVE 341 126 82 113 62 NC_002950:PG1497|3end_DNA-binding_protein,_histone-like_family_1574635..1574785_POSITIVE 327 292 260 137 102 NC_002950:PG0926|3end_hypothetical_protein_984407..984557_NEGATIVE 325 97 63 68 27 NC_002950:PG0172|3end_exonuclease_194355..194505_POSITIVE 321 130 83 79 32 NC_002950:PG0143|3end_hydrolase,_carbon-nitrogen_family_165747..165897_NEGATIVE 319 130 83 139 90 NC_002950:PG1027|3end_hypothetical_protein_1089197..1089347_NEGATIVE 310 125 81 145 106 NC_002950:PG1470|3end_hypothetical_protein_1548431..1548581_POSITIVE 306 290 244 149 102 NC_002950:PG1918|3end_preprotein_translocase_SecY_2014490..2014640_NEGATIVE 303 130 84 73 13 NC_002950:PG0959|3end_ATP-binding_protein,_Mrp/Nbp35_family_1020023..1020173_NEGATIVE 302 119 71 150 85 NC_002950:PG2214|3end_hypothetical_protein_2325301..2325451_NEGATIVE 302 70 26 51 10 NC_002950:PG0439|3end_hypothetical_protein_478810..478960_POSITIVE 300 650 604 82 30 NC_002950:PG0506|3end_arginine-specific_cysteine_proteinase_547625..547775_POSITIVE 299 119 71 56 5 NC_002950:PG1250|3end_hypothetical_protein_1327184..1327334_NEGATIVE