Origin IGS: cttcttctcctctaaaaaatagttgtttttattattaatgggctactaaagggcttcccgtttctcggactggtgcgctgctcctttattcacctccaaatgtcccaattctattataaccgctctctataagaacgaatatttaggtttaattgttttgtacaaagagaaataagacaataatatcctaccctatcgatgagtctatctctttaaagaccagattcagaacattttctttcggatagacttcataaggtttttataacagactgcaaaataaatgttttcttgtcaataatcttcctcttggggcgcagatttacagctgctcactccgatcttaagtgcaacggtttgatagatttaggatgaaaagccttgtggggctctaaggttatcttatccgaaatgtatcttcggtttcggataagaggacgattatcaaaccaaaaaaccggaaaaagtcgaaccggatcttcgaaaaacacgcgcgtaaaaactttcgttttggcgcgtaaatttttcagttcccgaaccaaaacaaaaaaaattacgaaccacgtttttgggaaccataaacacgagaaaaaacggtcgcaaacggaatcaatgcttttctcgctaccgttcctctttccgttcggtaggttcctcttatctatatatggtgcgcattgcagggcttaagcatttctatcttatctttgtacgaatctctgaaaacaaagcgaagaaaaagctaaagaggaaaagttatggcaggaataaaaatcgatccggctccggcaacagctttgcgtaaa .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 tttacgcaaagctgttgccggagccggatcgatttttattcctgccataacttttcctctttagctttttcttcgctttgttttcagagattcgtacaaagataagatagaaatgcttaagccctgcaatgcgcaccatatatagataagaggaacctaccgaacggaaagaggaacggtagcgagaaaagcattgattccgtttgcgaccgttttttctcgtgtttatggttcccaaaaacgtggttcgtaattttttttgttttggttcgggaactgaaaaatttacgcgccaaaacgaaagtttttacgcgcgtgtttttcgaagatccggttcgactttttccggttttttggtttgataatcgtcctcttatccgaaaccgaagatacatttcggataagataaccttagagccccacaaggcttttcatcctaaatctatcaaaccgttgcacttaagatcggagtgagcagctgtaaatctgcgccccaagaggaagattattgacaagaaaacatttattttgcagtctgttataaaaaccttatgaagtctatccgaaagaaaatgttctgaatctggtctttaaagagatagactcatcgatagggtaggatattattgtcttatttctctttgtacaaaacaattaaacctaaatattcgttcttatagagagcggttataatagaattgggacatttggaggtgaataaaggagcagcgcaccagtccgagaaacgggaagccctttagtagcccattaataataaaaacaactattttttagaggagaagaag Mask Tandem Repeat Region ================================================ cttcttctcctctaaaaaatagttgtttttattattaatgggctactaaagggcttcccgtttctcggactggtgcgctgctcctttattcacctccaaatgtcccaattctattataaccgctctctataagaacgaatatttaggtttaattgttttgtacaaagagaaataagacaataatatcctaccctatcgatgagtctatctctttaaagaccagattcagaacattttctttcggatagacttcataaggtttttataacagactgcaaaataaatgttttcttgtcaataatcttcctcttggggcgcagatttacagctgctcactccgatcttaagtgcaacggtttgatagatttaggatgaaaagccttgtggggctctaaggttatcttatccgaaatgtatcttcggtttcggataagaggacgattatcaaaccaaaaaaccggaaaaagtcgaaccggatcttcgaaaaacacgcgcgtaaaaactttcgttttggcgcgtaaatttttcagttcccgaaccaaaacaaaaaaaattacgaaccacgtttttgggaaccataaacacgagaaaaaacggtcgcaaacggaatcaatgcttttctcgctaccgttcctctttccgttcggtaggttcctcttatctatatatggtgcgcattgcagggcttaagcatttctatcttatctttgtacgaatctctgaaaacaaagcgaagaaaaagctaaagaggaaaagttatggcaggaataaaaatcgatccggctccggcaacagctttgcgtaaa Find is-nt database================================================ Query_seq: PG1089:PG1091|PG1089:PG1091:DNA-binding response regulator RprY:DHH subfamily 1 protein:<-->:1156351..1157156 806 cttcttctcctctaaaaaatagttgtttttattattaatgggctactaaagggcttcccgtttctcggactggtgcgctgctcctttattcacctccaaatgtcccaattctattataaccgctctctataagaacgaatatttaggtttaattgttttgtacaaagagaaataagacaataatatcctaccctatcgatgagtctatctctttaaagaccagattcagaacattttctttcggatagacttcataaggtttttataacagactgcaaaataaatgttttcttgtcaataatcttcctcttggggcgcagatttacagctgctcactccgatcttaagtgcaacggtttgatagatttaggatgaaaagccttgtggggctctaaggttatcttatccgaaatgtatcttcggtttcggataagaggacgattatcaaaccaaaaaaccggaaaaagtcgaaccggatcttcgaaaaacacgcgcgtaaaaactttcgttttggcgcgtaaatttttcagttcccgaaccaaaacaaaaaaaattacgaaccacgtttttgggaaccataaacacgagaaaaaacggtcgcaaacggaatcaatgcttttctcgctaccgttcctctttccgttcggtaggttcctcttatctatatatggtgcgcattgcagggcttaagcatttctatcttatctttgtacgaatctctgaaaacaaagcgaagaaaaagctaaagaggaaaagttatggcaggaataaaaatcgatccggctccggcaacagctttgcgtaaa Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PG1089:PG1091|PG1089:PG1091:DNA-binding response regulator RprY:DHH subfamily 1 protein:<-->:1156351..1157156 806 cttcttctcctctaaaaaatagttgtttttattattaatgggctactaaagggcttcccgtttctcggactggtgcgctgctcctttattcacctccaaatgtcccaattctattataaccgctctctataagaacgaatatttaggtttaattgttttgtacaaagagaaataagacaataatatcctaccctatcgatgagtctatctctttaaagaccagattcagaacattttctttcggatagacttcataaggtttttataacagactgcaaaataaatgttttcttgtcaataatcttcctcttggggcgcagatttacagctgctcactccgatcttaagtgcaacggtttgatagatttaggatgaaaagccttgtggggctctaaggttatcttatccgaaatgtatcttcggtttcggataagaggacgattatcaaaccaaaaaaccggaaaaagtcgaaccggatcttcgaaaaacacgcgcgtaaaaactttcgttttggcgcgtaaatttttcagttcccgaaccaaaacaaaaaaaattacgaaccacgtttttgggaaccataaacacgagaaaaaacggtcgcaaacggaatcaatgcttttctcgctaccgttcctctttccgttcggtaggttcctcttatctatatatggtgcgcattgcagggcttaagcatttctatcttatctttgtacgaatctctgaaaacaaagcgaagaaaaagctaaagaggaaaagttatggcaggaataaaaatcgatccggctccggcaacagctttgcgtaaa Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PG1089:PG1091|PG1089:PG1091:DNA-binding response regulator RprY:DHH subfamily 1 protein:<-->:1156351..1157156 806 cttcttctcctctaaaaaatagttgtttttattattaatgggctactaaagggcttcccgtttctcggactggtgcgctgctcctttattcacctccaaatgtcccaattctattataaccgctctctataagaacgaatatttaggtttaattgttttgtacaaagagaaataagacaataatatcctaccctatcgatgagtctatctctttaaagaccagattcagaacattttctttcggatagacttcataaggtttttataacagactgcaaaataaatgttttcttgtcaataatcttcctcttggggcgcagatttacagctgctcactccgatcttaagtgcaacggtttgatagatttaggatgaaaagccttgtggggctctaaggttatcttatccgaaatgtatcttcggtttcggataagaggacgattatcaaaccaaaaaaccggaaaaagtcgaaccggatcttcgaaaaacacgcgcgtaaaaactttcgttttggcgcgtaaatttttcagttcccgaaccaaaacaaaaaaaattacgaaccacgtttttgggaaccataaacacgagaaaaaacggtcgcaaacggaatcaatgcttttctcgctaccgttcctctttccgttcggtaggttcctcttatctatatatggtgcgcattgcagggcttaagcatttctatcttatctttgtacgaatctctgaaaacaaagcgaagaaaaagctaaagaggaaaagttatggcaggaataaaaatcgatccggctccggcaacagctttgcgtaaa Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 cttcttctcctctaaaaaatagttgtttttattattaatgggctactaaagggcttcccgtttctcggactggtgcgctgctcctttattcacctccaaatgtcccaattctattataaccgctctctataagaacgaatatttaggtttaattgttttgtacaaagagaaataagacaataatatcctaccctatcgatgagtctatctctttaaagaccagattcagaacattttctttcggatagacttcataaggtttttataacagactgcaaaataaatgttttcttgtcaataatcttcctcttggggcgcagatttacagctgctcactccgatcttaagtgcaacggtttgatagatttaggatgaaaagccttgtggggctctaaggttatcttatccgaaatgtatcttcggtttcggataagaggacgattatcaaaccaaaaaaccggaaaaagtcgaaccggatcttcgaaaaacacgcgcgtaaaaactttcgttttggcgcgtaaatttttcagttcccgaaccaaaacaaaaaaaattacgaaccacgtttttgggaaccataaacacgagaaaaaacggtcgcaaacggaatcaatgcttttctcgctaccgttcctctttccgttcggtaggttcctcttatctatatatggtgcgcattgcagggcttaagcatttctatcttatctttgtacgaatctctgaaaacaaagcgaagaaaaagctaaagaggaaaagttatggcaggaataaaaatcgatccggctccggcaacagctttgcgtaaa Predict ORF larger than 30AA ================================================ Protein_Len: 37 Strand: + Start: 19 End: 129 .................. M V V F I I N G L L K G F P F L G L V R C S F I H L Q M S Q F Y Y N R S L ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 31 Strand: + Start: 153 End: 245 ........................................................................................................................................................ M F C T K R N K T I I S Y P I D E S I S L K T R F R T F S F G ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 36 Strand: + Start: 265 End: 372 ........................................................................................................................................................................................................................................................................ M T D C K I N V F L S I I F L L G R R F T A A H S D L K C N G L I D L G .................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 38 Strand: + Start: 405 End: 518 .................................................................................................................................................................................................................................................................................................................................................................................................................... M R N V S S V S D K R T I I K P K N R K K S N R I F E K H A R K N F R F G A ................................................................................................................................................................................................................................................................................................ Protein_Len: 60 Strand: + Start: 382 End: 687 ............................................................................................................................................................................................................................................................................................................................................................................................. M W G S K V I L S E M Y L R F R I R G R L S N Q K T G K S R T G S S K N T R V K T F V L A R K F F S S R T K T K K I T N ....................................................................................................................... Protein_Len: 60 Strand: + Start: 569 End: 802 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ M G T I N T R K N G R K R N Q C F S R Y R S S F R S V G S S Y L Y M V R I A G L K H F Y L I F V R I S E N K A K K K L K .... Protein_Len: 35 Strand: - Start: 557 End: 661 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ S G R K Q S G Y V R S F V T A F P I L A K R A V T G R E T R Y T G R M ................................................................................................................................................. Protein_Len: 52 Strand: - Start: 448 End: 603 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................... V L F G S F T S G S R R F V R A Y F S E N Q R T F K E T G S G F C F F N R V V N K P V M F V L F F P R M ........................................................................................................................................................................................................... Protein_Len: 41 Strand: - Start: 401 End: 523 ................................................................................................................................................................................................................................................................................................................................................................................................................ R I R F T D E T E S L L V I I L G F F R F F D F R I K S F C A R L F K R K P A Y M ........................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 336 End: 683 ............................................................................................................................................................................................................................................................................................................................................... K T K A R L N K L E R V L V F F I V F W T K P F W L C S F F R D C V S D I S K E S G N R K G N P L N R K D I Y P A C Q M ........................................................................................................................... cttcttctcctctaaaaaatagttgtttttattattaatgggctactaaagggcttcccgtttctcggactggtgcgctgctcctttattcacctccaaatgtcccaattctattataaccgctctctataagaacgaatatttaggtttaattgttttgtacaaagagaaataagacaataatatcctaccctatcgatgagtctatctctttaaagaccagattcagaacattttctttcggatagacttcataaggtttttataacagactgcaaaataaatgttttcttgtcaataatcttcctcttggggcgcagatttacagctgctcactccgatcttaagtgcaacggtttgatagatttaggatgaaaagccttgtggggctctaaggttatcttatccgaaatgtatcttcggtttcggataagaggacgattatcaaaccaaaaaaccggaaaaagtcgaaccggatcttcgaaaaacacgcgcgtaaaaactttcgttttggcgcgtaaatttttcagttcccgaaccaaaacaaaaaaaattacgaaccacgtttttgggaaccataaacacgagaaaaaacggtcgcaaacggaatcaatgcttttctcgctaccgttcctctttccgttcggtaggttcctcttatctatatatggtgcgcattgcagggcttaagcatttctatcttatctttgtacgaatctctgaaaacaaagcgaagaaaaagctaaagaggaaaagttatggcaggaataaaaatcgatccggctccggcaacagctttgcgtaaa Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ cttcttctcctctaaaaaatagttgtttttattattaatgggctactaaagggcttcccgtttctcggactggtgcgctgctcctttattcacctccaaatgtcccaattctattataaccgctctctataagaacgaatatttaggtttaattgttttgtacaaagagaaataagacaataatatcctaccctatcgatgagtctatctctttaaagaccagattcagaacattttctttcggatagacttcataaggtttttataacagactgcaaaataaatgttttcttgtcaataatcttcctcttggggcgcagatttacagctgctcactccgatcttaagtgcaacggtttgatagatttaggatgaaaagccttgtggggctctaaggttatcttatccgaaatgtatcttcggtttcggataagaggacgattatcaaaccaaaaaaccggaaaaagtcgaaccggatcttcgaaaaacacgcgcgtaaaaactttcgttttggcgcgtaaatttttcagttcccgaaccaaaacaaaaaaaattacgaaccacgtttttgggaaccataaacacgagaaaaaacggtcgcaaacggaatcaatgcttttctcgctaccgttcctctttccgttcggtaggttcctcttatctatatatggtgcgcattgcagggcttaagcatttctatcttatctttgtacgaatctctgaaaacaaagcgaagaaaaagctaaagaggaaaagttatggcaggaataaaaatcgatccggctccggcaacagctttgcgtaaa Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 53 HP_score: -3.7 Tail_Score: -3.59979 Start: 407 End: 423 Full_Region: CTAAGGTTATCTTAT CCGAA ATGTATC TTCGG TTTCGGATAAGAGGA ......................................................................................................................................................................................................................................................................................................................................................................................................................CCGAAATGTATCTTCGG............................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 46 HP_score: -2.3 Tail_Score: -3.44315 Start: 468 End: 484 Full_Region: ttacgcgcgtgtttt tcgaa gatccgg ttcga ctttttccggttttt ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tcgaagatccggttcga.................................................................................................................................................................................................................................................................................................................................. Find igs database================================================ Query_seq: PG1089:PG1091|PG1089:PG1091:DNA-binding response regulator RprY:DHH subfamily 1 protein:<-->:1156351..1157156 806 cttcttctcctctaaaaaatagttgtttttattattaatgggctactaaagggcttcccgtttctcggactggtgcgctgctcctttattcacctccaaatgtcccaattctattataaccgctctctataagaacgaatatttaggtttaattgttttgtacaaagagaaataagacaataatatcctaccctatcgatgagtctatctctttaaagaccagattcagaacattttctttcggatagacttcataaggtttttataacagactgcaaaataaatgttttcttgtcaataatcttcctcttggggcgcagatttacagctgctcactccgatcttaagtgcaacggtttgatagatttaggatgaaaagccttgtggggctctaaggttatcttatccgaaatgtatcttcggtttcggataagaggacgattatcaaaccaaaaaaccggaaaaagtcgaaccggatcttcgaaaaacacgcgcgtaaaaactttcgttttggcgcgtaaatttttcagttcccgaaccaaaacaaaaaaaattacgaaccacgtttttgggaaccataaacacgagaaaaaacggtcgcaaacggaatcaatgcttttctcgctaccgttcctctttccgttcggtaggttcctcttatctatatatggtgcgcattgcagggcttaagcatttctatcttatctttgtacgaatctctgaaaacaaagcgaagaaaaagctaaagaggaaaagttatggcaggaataaaaatcgatccggctccggcaacagctttgcgtaaa Intra-Species Hit: Count: 1 Min: 1 Max: 806 Len: 806 Subject: NC_002950_PG1089_PG1091|DNA-binding response regulator RprY:DHH subfamily 1 protein|NEGATIVE:POSITIVE|[1156351,1157156]|806 HSP 1 e-value: 0.0 bit: 884.0 Len: 446 Query Start:1 Query End:446 Subject Strand: POSITIVE Subject Start: 1 Subject End: 446 cttcttctcctctaaaaaatagttgtttttattattaatgggctactaaagggcttcccgtttctcggactggtgcgctgctcctttattcacctccaaatgtcccaattctattataaccgctctctataagaacgaatatttaggtttaattgttttgtacaaagagaaataagacaataatatcctaccctatcgatgagtctatctctttaaagaccagattcagaacattttctttcggatagacttcataaggtttttataacagactgcaaaataaatgttttcttgtcaataatcttcctcttggggcgcagatttacagctgctcactccgatcttaagtgcaacggtttgatagatttaggatgaaaagccttgtggggctctaaggttatcttatccgaaatgtatcttcggtttcggataagaggacgattatc........................................................................................................................................................................................................................................................................................................................................................................ cttcttctcctctaaaaaatagttgtttttattattaatgggctactaaagggcttcccgtttctcggactggtgcgctgctcctttattcacctccaaatgtcccaattctattataaccgctctctataagaacgaatatttaggtttaattgttttgtacaaagagaaataagacaataatatcctaccctatcgatgagtctatctctttaaagaccagattcagaacattttctttcggatagacttcataaggtttttataacagactgcaaaataaatgttttcttgtcaataatcttcctcttggggcgcagatttacagctgctcactccgatcttaagtgcaacggtttgatagatttaggatgaaaagccttgtggggctctaaggttatcttatccgaaatgtatcttcggtttcggataagaggacgattatc........................................................................................................................................................................................................................................................................................................................................................................ HSP 2 e-value: 1.0E-156 bit: 553.0 Len: 303 Query Start:504 Query End:806 Subject Strand: POSITIVE Subject Start: 504 Subject End: 806 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tttcgttttggcgcgtaaatttttcagttcccgaaccaaaacnnnnnnnnttacgaaccacgtttttgggaaccataaacacgagaaaaaacggtcgcaaacggaatcaatgcttttctcgctaccgttcctctttccgttcggtaggttcctcttatctatatatggtgcgcattgcagggcttaagcatttctatcttatctttgtacgaatctctgaaaacaaagcgaagaaaaagctaaagaggaaaagttatggcaggaataaaaatcgatccggctccggcaacagctttgcgtaaa .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tttcgttttggcgcgtaaatttttcagttcccgaaccaaaacaaaaaaaattacgaaccacgtttttgggaaccataaacacgagaaaaaacggtcgcaaacggaatcaatgcttttctcgctaccgttcctctttccgttcggtaggttcctcttatctatatatggtgcgcattgcagggcttaagcatttctatcttatctttgtacgaatctctgaaaacaaagcgaagaaaaagctaaagaggaaaagttatggcaggaataaaaatcgatccggctccggcaacagctttgcgtaaa Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ CUUCUUCUCCUCUAAAAAAUAGUUGUUUUUAUUAUUAAUGGGCUACUAAAGGGCUUCCCGUUUCUCGGACUGGUGCGCUGCUCCUUUAUUCACCUCCAAAUGUCCCAAUUCUAUUAUAACCGCUCUCUAUAAGAACGAAUAUUUAGGUUUAAUUGUUUUGUACAAAGAGAAAUAAGACAAUAAUAUCCUACCCUAUCGAUGAGUCUAUCUCUUUAAAGACCAGAUUCAGAACAUUUUCUUUCGGAUAGACUUCAUAAGGUUUUUAUAACAGACUGCAAAAUAAAUGUUUUCUUGUCAAUAAUCUUCCUCUUGGGGCGCAGAUUUACAGCUGCUCACUCCGAUCUUAAGUGCAACGGUUUGAUAGAUUUAGGAUGAAAAGCCUUGUGGGGCUCUAAGGUUAUCUUAUCCGAAAUGUAUCUUCGGUUUCGGAUAAGAGGACGAUUAUCAAACCAAAAAACCGGAAAAAGUCGAACCGGAUCUUCGAAAAACACGCGCGUAAAAACUUUCGUUUUGGCGCGUAAAUUUUUCAGUUCCCGAACCAAAACAAAAAAAAUUACGAACCACGUUUUUGGGAACCAUAAACACGAGAAAAAACGGUCGCAAACGGAAUCAAUGCUUUUCUCGCUACCGUUCCUCUUUCCGUUCGGUAGGUUCCUCUUAUCUAUAUAUGGUGCGCAUUGCAGGGCUUAAGCAUUUCUAUCUUAUCUUUGUACGAAUCUCUGAAAACAAAGCGAAGAAAAAGCUAAAGAGGAAAAGUUAUGGCAGGAAUAAAAAUCGAUCCGGCUCCGGCAACAGCUUUGCGUAAA ...(((.((((((...(((((.((((((((((.......((((.......(((...))).......((((.((((...............)))).......))))................))))...)))))))))).))))).(((((..(((((((((....(((((..((((((............(((((...((((((((((((....(((((..((((.......))))))))).)))))))).)))).(((...((((.(((((..(((.......)))..)).)))..))))....)))..))))).((((........)))).......).))))).((((((.(((..((((((.....((((..((((((((..(.((......(((.(((((((((((((.........))))))))))))).))).........((((......((((((..(.(((.(((..((((.((((((...((((((.(((((....))))).))))))...)))))).(((((((((.................(((.....))).))))))))).........)))).....)))))))....(((((....((.......))....)))))..))))))...((((((.....))))))......))))..)).)..))))))))...))))))))))..))).))))))...)))))....))))))))).....)))))..)))))).)))....(((.(((...........))).)))...((((.....))))..... (-199.03) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UUUACGCAAAGCUGUUGCCGGAGCCGGAUCGAUUUUUAUUCCUGCCAUAACUUUUCCUCUUUAGCUUUUUCUUCGCUUUGUUUUCAGAGAUUCGUACAAAGAUAAGAUAGAAAUGCUUAAGCCCUGCAAUGCGCACCAUAUAUAGAUAAGAGGAACCUACCGAACGGAAAGAGGAACGGUAGCGAGAAAAGCAUUGAUUCCGUUUGCGACCGUUUUUUCUCGUGUUUAUGGUUCCCAAAAACGUGGUUCGUAAUUUUUUUUGUUUUGGUUCGGGAACUGAAAAAUUUACGCGCCAAAACGAAAGUUUUUACGCGCGUGUUUUUCGAAGAUCCGGUUCGACUUUUUCCGGUUUUUUGGUUUGAUAAUCGUCCUCUUAUCCGAAACCGAAGAUACAUUUCGGAUAAGAUAACCUUAGAGCCCCACAAGGCUUUUCAUCCUAAAUCUAUCAAACCGUUGCACUUAAGAUCGGAGUGAGCAGCUGUAAAUCUGCGCCCCAAGAGGAAGAUUAUUGACAAGAAAACAUUUAUUUUGCAGUCUGUUAUAAAAACCUUAUGAAGUCUAUCCGAAAGAAAAUGUUCUGAAUCUGGUCUUUAAAGAGAUAGACUCAUCGAUAGGGUAGGAUAUUAUUGUCUUAUUUCUCUUUGUACAAAACAAUUAAACCUAAAUAUUCGUUCUUAUAGAGAGCGGUUAUAAUAGAAUUGGGACAUUUGGAGGUGAAUAAAGGAGCAGCGCACCAGUCCGAGAAACGGGAAGCCCUUUAGUAGCCCAUUAAUAAUAAAAACAACUAUUUUUUAGAGGAGAAGAAG .....((((.....))))..((((((((((........(((((((((.(((.......(((.(((..(((((((.((((((..............))))))....)).))))).))).)))........((((.(((((..........(.((((((......((((...((((((((((.(((((..((.......))...))))).)))))))))).))))......)))))))......))))).)))).........))).))))..)))))..(((((((..((((((.(((((....)))))...)))))))))))))...))))))))))...(((((((.((((((.(((((((((...((..((((((((((((...........))))))))))))..))...((((((......))))))............))))))))).............(((((.((.((.(((((...(((.(((((((((...........(((((.((...((.......))...))))))).....((((((((((((((((((.(((((....(........)...)))))...).))))))))..)).)))))))..........(((((((.((((..((((.....))))..........(((..(((((((...)))))))..)))...)))).)))))))))))).))))......))))))))))..)).))))).....(((..((......))..))).........))))))..(((.....))).)))))))... (-218.73) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 1053 100 51 191 142 NC_002950:PG1089|5end_DNA-binding_response_regulator_RprY_1156260..1156490_NEGATIVE 547 550 504 99 53 NC_002950:PG0174|5end_pyridine_nucleotide-disulphide_oxidoreductase_family_protein_197628..197858_NEGATIVE 529 550 504 64 17 NC_002950:PG2064|5end_hypothetical_protein_2160550..2160780_POSITIVE 520 540 492 89 41 NC_002950:PG1980|5end_hypothetical_protein_2067930..2068160_NEGATIVE 514 540 492 67 19 NC_002950:PG1799|5end_hypothetical_protein_1894499..1894729_POSITIVE 467 540 492 182 134 NC_002950:PG0081|5end_hypothetical_protein_93805..94035_POSITIVE 392 550 504 66 19 NC_002950:PG0313|5end_hypothetical_protein_347366..347596_POSITIVE 390 788 741 148 87 NC_002950:PG0582|5end_cell_division_protein_FtsQ,_putative_639600..639830_POSITIVE 376 86 49 139 103 NC_002950:PG1672|5end_hypothetical_protein_1757637..1757867_POSITIVE 376 86 49 139 103 NC_002950:PG0100|5end_hypothetical_protein_119219..119449_NEGATIVE 375 713 671 67 27 NC_002950:PG0881|5end_recombinase_A_943063..943293_POSITIVE 369 429 382 156 111 NC_002950:PG1303|5end_helicase,_putative_1380652..1380882_POSITIVE 363 98 51 205 148 NC_002950:PG1730|5end_O-methyltransferase_family_protein_1819577..1819807_NEGATIVE 363 80 38 210 172 NC_002950:PG0375|5end_50S_ribosomal_protein_L13_405934..406164_POSITIVE 357 389 346 215 172 NC_002950:PG0912|5end_polysaccharide_transport_protein,_putative_975356..975586_NEGATIVE 354 96 52 185 130 NC_002950:PG0339|5end_hypothetical_protein_375062..375292_POSITIVE 348 496 451 231 174 NC_002950:PG2127|5end_hypothetical_protein_2233552..2233782_NEGATIVE 348 86 44 66 30 NC_002950:PG0138|5end_malonyl_CoA-acyl_carrier_protein_transacylase_160673..160903_POSITIVE 345 657 621 215 172 NC_002950:PG0399|5end_lipoprotein,_putative_436237..436467_NEGATIVE 343 84 41 46 2 NC_002950:PG2224|5end_hypothetical_protein_2338863..2339093_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 449 550 509 42 1 NC_002950:PG1626|3end_hypothetical_protein_1710486..1710636_POSITIVE 432 356 311 80 39 NC_002950:PG1655|3end_hypothetical_protein_1737384..1737534_POSITIVE 375 713 671 46 6 NC_002950:PG0880|3end_bacterioferritin_comigratory_protein_943122..943272_POSITIVE 366 667 621 96 41 NC_002950:PG1112|3end_hypothetical_protein_1185571..1185721_POSITIVE 363 98 51 104 47 NC_002950:PG1731|3end_3-dehydroquinate_dehydratase_1819678..1819828_NEGATIVE 362 87 41 99 58 NC_002950:PG2214|3end_hypothetical_protein_2325301..2325451_NEGATIVE 360 89 41 94 44 NC_002950:PG0635|3end_ribosomal_protein_L11_methyltransferase_686838..686988_NEGATIVE 351 87 50 137 93 NC_002950:PG1814|3end_DNA_primase_1908606..1908756_NEGATIVE 341 657 618 54 12 NC_002950:PG1330|3end_large_conductance_mechanosensitive_channel_protein_1410165..1410315_POSITIVE 338 344 301 77 35 NC_002950:PG0022|3end_sulfate_permease_family_protein_25120..25270_NEGATIVE 335 87 50 57 14 NC_002950:PG0332|3end_transcription_termination_factor_Rho_367675..367825_POSITIVE 331 640 595 150 102 NC_002950:PG1174|3end_thioesterase_family_protein_1253210..1253360_NEGATIVE 331 646 604 64 13 NC_002950:PG0563|3end_hypothetical_protein_620935..621085_NEGATIVE 331 81 51 65 24 NC_002950:PG0334|3end_glycosyl_transferase,_group_2_family_protein_368792..368942_NEGATIVE 330 635 593 80 33 NC_002950:PG1370|3end_lysyl-tRNA_synthetase_1450493..1450643_NEGATIVE 330 84 41 84 39 NC_002950:PG0267|3end_arginyl-tRNA_synthetase_300973..301123_POSITIVE 329 107 68 111 68 NC_002950:PG1618|3end_hypothetical_protein_1698669..1698819_POSITIVE 329 97 51 79 24 NC_002950:PG0211|3end_cobalamin_biosynthesis_protein_CbiG/precorrin-4_C11-methyltransferase_245966..246116_NEGATIVE 327 676 631 151 103 NC_002950:PG0678|3end_pyrazinamidase/nicotinamidase,_putative_729471..729621_POSITIVE 326 723 681 146 106 NC_002950:PG1441|3end_lysozyme-related_protein_1527358..1527508_NEGATIVE