Origin IGS: tcggtcgagcgaggacgcttgtgccgaatttgtgatgtacaagcgcgaataagatcccgacatttctgtcagatactaaggcactcgcccgagttcggtcgcgaacttgggtgggtgcctctttttatttcatcggtcgaagaggccttttctgcctctcgttttatatataaaacactttacaatctatatattaaatgaaaacgatttatatataaatcgaaaatgataaatatataaatcgaattcgttctgtatataaatcgtttcccaatctcttttcgctgtcttccgatctcttttcagcggtttctcctcttcctttcagtcgcttatttagaaccattccaaacttctcttcattgttgaaaacttttttggcgcaagtttttatcgttatggggaagcccttttgtctgatctgtggtctaaaatcataaaagatcccttgtgcgactaaggctttctttgcatatttgtggttataaaatatttattggcacttagatattaggcctgtgtaattattctt .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 aagaataattacacaggcctaatatctaagtgccaataaatattttataaccacaaatatgcaaagaaagccttagtcgcacaagggatcttttatgattttagaccacagatcagacaaaagggcttccccataacgataaaaacttgcgccaaaaaagttttcaacaatgaagagaagtttggaatggttctaaataagcgactgaaaggaagaggagaaaccgctgaaaagagatcggaagacagcgaaaagagattgggaaacgatttatatacagaacgaattcgatttatatatttatcattttcgatttatatataaatcgttttcatttaatatatagattgtaaagtgttttatatataaaacgagaggcagaaaaggcctcttcgaccgatgaaataaaaagaggcacccacccaagttcgcgaccgaactcgggcgagtgccttagtatctgacagaaatgtcgggatcttattcgcgcttgtacatcacaaattcggcacaagcgtcctcgctcgaccga Mask Tandem Repeat Region ================================================ tcggtcgagcgaggacgcttgtgccgaatttgtgatgtacaagcgcgaataagatcccgacatttctgtcagatactaaggcactcgcccgagttcggtcgcgaacttgggtgggtgcctctttttatttcatcggtcgaagaggccttttctgcctctcgttttatatataaaacactttacaatctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttcgttctgtatataaatcgtttcccaatctcttttcgctgtcttccgatctcttttcagcggtttctcctcttcctttcagtcgcttatttagaaccattccaaacttctcttcattgttgaaaacttttttggcgcaagtttttatcgttatggggaagcccttttgtctgatctgtggtctaaaatcataaaagatcccttgtgcgactaaggctttctttgcatatttgtggttataaaatatttattggcacttagatattaggcctgtgtaattattctt Find is-nt database================================================ Query_seq: PG1013:PG1014|PG1013:PG1014:acetyl-CoA hydrolase/transferase family protein:TPR domain protein:->->:1073371..1073902 532 tcggtcgagcgaggacgcttgtgccgaatttgtgatgtacaagcgcgaataagatcccgacatttctgtcagatactaaggcactcgcccgagttcggtcgcgaacttgggtgggtgcctctttttatttcatcggtcgaagaggccttttctgcctctcgttttatatataaaacactttacaatctatatattaaatgaaaacgatttatatataaatcgaaaatgataaatatataaatcgaattcgttctgtatataaatcgtttcccaatctcttttcgctgtcttccgatctcttttcagcggtttctcctcttcctttcagtcgcttatttagaaccattccaaacttctcttcattgttgaaaacttttttggcgcaagtttttatcgttatggggaagcccttttgtctgatctgtggtctaaaatcataaaagatcccttgtgcgactaaggctttctttgcatatttgtggttataaaatatttattggcacttagatattaggcctgtgtaattattctt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PG1013:PG1014|PG1013:PG1014:acetyl-CoA hydrolase/transferase family protein:TPR domain protein:->->:1073371..1073902 532 tcggtcgagcgaggacgcttgtgccgaatttgtgatgtacaagcgcgaataagatcccgacatttctgtcagatactaaggcactcgcccgagttcggtcgcgaacttgggtgggtgcctctttttatttcatcggtcgaagaggccttttctgcctctcgttttatatataaaacactttacaatctatatattaaatgaaaacgatttatatataaatcgaaaatgataaatatataaatcgaattcgttctgtatataaatcgtttcccaatctcttttcgctgtcttccgatctcttttcagcggtttctcctcttcctttcagtcgcttatttagaaccattccaaacttctcttcattgttgaaaacttttttggcgcaagtttttatcgttatggggaagcccttttgtctgatctgtggtctaaaatcataaaagatcccttgtgcgactaaggctttctttgcatatttgtggttataaaatatttattggcacttagatattaggcctgtgtaattattctt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PG1013:PG1014|PG1013:PG1014:acetyl-CoA hydrolase/transferase family protein:TPR domain protein:->->:1073371..1073902 532 tcggtcgagcgaggacgcttgtgccgaatttgtgatgtacaagcgcgaataagatcccgacatttctgtcagatactaaggcactcgcccgagttcggtcgcgaacttgggtgggtgcctctttttatttcatcggtcgaagaggccttttctgcctctcgttttatatataaaacactttacaatctatatattaaatgaaaacgatttatatataaatcgaaaatgataaatatataaatcgaattcgttctgtatataaatcgtttcccaatctcttttcgctgtcttccgatctcttttcagcggtttctcctcttcctttcagtcgcttatttagaaccattccaaacttctcttcattgttgaaaacttttttggcgcaagtttttatcgttatggggaagcccttttgtctgatctgtggtctaaaatcataaaagatcccttgtgcgactaaggctttctttgcatatttgtggttataaaatatttattggcacttagatattaggcctgtgtaattattctt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 tcggtcgagcgaggacgcttgtgccgaatttgtgatgtacaagcgcgaataagatcccgacatttctgtcagatactaaggcactcgcccgagttcggtcgcgaacttgggtgggtgcctctttttatttcatcggtcgaagaggccttttctgcctctcgttttatatataaaacactttacaatctatatattaaatgaaaacgatttatatataaatcgaaaatgataaatatataaatcgaattcgttctgtatataaatcgtttcccaatctcttttcgctgtcttccgatctcttttcagcggtttctcctcttcctttcagtcgcttatttagaaccattccaaacttctcttcattgttgaaaacttttttggcgcaagtttttatcgttatggggaagcccttttgtctgatctgtggtctaaaatcataaaagatcccttgtgcgactaaggctttctttgcatatttgtggttataaaatatttattggcacttagatattaggcctgtgtaattattctt Predict ORF larger than 30AA ================================================ Protein_Len: 39 Strand: + Start: 54 End: 170 ..................................................... M P T F L S D T K A L A R V R S R T W V G A S F Y F I G R R G L F C L S F Y I .......................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 19 End: 198 .................. M C R I C D V Q A R I R S R H F C Q I L R H S P E F G R E L G W V P L F I S S V E E A F S A S R F I Y K T L Y N L Y I K .............................................................................................................................................................................................................................................................................................................................................. Protein_Len: 40 Strand: + Start: 107 End: 226 .......................................................................................................... M G G C L F L F H R S K R P F L P L V L Y I K H F T I Y I L N E N D L Y I N R K .................................................................................................................................................................................................................................................................................................................. Protein_Len: 42 Strand: + Start: 241 End: 366 ................................................................................................................................................................................................................................................ M E F V L Y I N R F P I S F R C L P I S F Q R F L L F L S V A Y L E P F Q T S L H C ...................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 219 End: 437 .......................................................................................................................................................................................................................... M E N D K Y I N R I R S V Y K S F P N L F S L S S D L F S A V S P L P F S R L F R T I P N F S S L L K T F L A Q V F I V ............................................................................................... Protein_Len: 32 Strand: + Start: 362 End: 457 ......................................................................................................................................................................................................................................................................................................................................................................... M V E N F F G A S F Y R Y G E A L L S D L W S K I I K D P L C D ........................................................................... Protein_Len: 60 Strand: - Start: 212 End: 493 ................................................................................................................................................................................................................... G R G K L R K N L V M G F K E E N N F V K K A C T K I T I P F G K Q R I Q P R F D Y F I G Q A V L A K K A Y K H N Y F M ....................................... Protein_Len: 39 Strand: - Start: 190 End: 306 ............................................................................................................................................................................................. I N F S F S K Y I F R F H Y I Y L D F E N Q I Y I T E W D R K A T K R D R K M .................................................................................................................................................................................................................................. Protein_Len: 38 Strand: - Start: 183 End: 296 ...................................................................................................................................................................................... L R Y I L H F R N I Y L D F I I F I Y I S N T R Y I F R K G I E K R Q R G M ............................................................................................................................................................................................................................................ Protein_Len: 32 Strand: - Start: 72 End: 167 ....................................................................... I S L C E G S N P R S S P H T G R K I E D T S S A K E A E R K M ............................................................................................................................................................................................................................................................................................................................................................................. tcggtcgagcgaggacgcttgtgccgaatttgtgatgtacaagcgcgaataagatcccgacatttctgtcagatactaaggcactcgcccgagttcggtcgcgaacttgggtgggtgcctctttttatttcatcggtcgaagaggccttttctgcctctcgttttatatataaaacactttacaatctatatattaaatgaaaacgatttatatataaatcgaaaatgataaatatataaatcgaattcgttctgtatataaatcgtttcccaatctcttttcgctgtcttccgatctcttttcagcggtttctcctcttcctttcagtcgcttatttagaaccattccaaacttctcttcattgttgaaaacttttttggcgcaagtttttatcgttatggggaagcccttttgtctgatctgtggtctaaaatcataaaagatcccttgtgcgactaaggctttctttgcatatttgtggttataaaatatttattggcacttagatattaggcctgtgtaattattctt Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: - Score: 82 Start: 191 End: 220 ..............................................................................................................................................................................................ATTTATATATAAATCGTTTTCATTTAATAT........................................................................................................................................................................................................................................................................................................................ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ tcggtcgagcgaggacgcttgtgccgaatttgtgatgtacaagcgcgaataagatcccgacatttctgtcagatactaaggcactcgcccgagttcggtcgcgaacttgggtgggtgcctctttttatttcatcggtcgaagaggccttttctgcctctcgttttatatataaaacactttacaatctatatattaaatgaaaacgatttatatataaatcgaaaatgataaatatataaatcgaattcgttctgtatataaatcgtttcccaatctcttttcgctgtcttccgatctcttttcagcggtttctcctcttcctttcagtcgcttatttagaaccattccaaacttctcttcattgttgaaaacttttttggcgcaagtttttatcgttatggggaagcccttttgtctgatctgtggtctaaaatcataaaagatcccttgtgcgactaaggctttctttgcatatttgtggttataaaatatttattggcacttagatattaggcctgtgtaattattctt Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 100 HP_score: -20.4 Tail_Score: -5.33405 Start: 78 End: 121 Full_Region: TTTCTGTCAGATACT AAGGCACTCGCCCGAGTTCG GTCG CGAACTTGGGTGGGTGCCTC TTTTTATTTCATCGG .............................................................................AAGGCACTCGCCCGAGTTCGGTCGCGAACTTGGGTGGGTGCCTC........................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 100 HP_score: -23.0 Tail_Score: -4.29436 Start: 80 End: 119 Full_Region: TCTGTCAGATACTAA GGCACTCGCCCGAGTTCG GTCG CGAACTTGGGTGGGTGCC TCTTTTTATTTCATC ...............................................................................GGCACTCGCCCGAGTTCGGTCGCGAACTTGGGTGGGTGCC............................................................................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: - Conf: 100 HP_score: -16.4 Tail_Score: -3.32022 Start: 80 End: 119 Full_Region: gatgaaataaaaaga ggcacccacccaagttcg cgac cgaactcgggcgagtgcc ttagtatctgacaga ...............................................................................ggcacccacccaagttcgcgaccgaactcgggcgagtgcc............................................................................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: + Conf: 68 HP_score: -4.6 Tail_Score: -4.60797 Start: 138 End: 161 Full_Region: TTTTATTTCATCGGT CGAAGAGGC CTTTTCT GCCTCTCG TTTTATATATAAAAC .........................................................................................................................................CGAAGAGGCCTTTTCTGCCTCTCG................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 79 HP_score: -7.1 Tail_Score: -4.6038 Start: 205 End: 222 Full_Region: tatatttatcatttt cgattta tata taaatcg ttttcatttaatata ............................................................................................................................................................................................................cgatttatatataaatcg...................................................................................................................................................................................................................................................................................................................... Find igs database================================================ Query_seq: PG1013:PG1014|PG1013:PG1014:acetyl-CoA hydrolase/transferase family protein:TPR domain protein:->->:1073371..1073902 532 tcggtcgagcgaggacgcttgtgccgaatttgtgatgtacaagcgcgaataagatcccgacatttctgtcagatactaaggcactcgcccgagttcggtcgcgaacttgggtgggtgcctctttttatttcatcggtcgaagaggccttttctgcctctcgttttatatataaaacactttacaatctatatattaaatgaaaacgatttatatataaatcgaaaatgataaatatataaatcgaattcgttctgtatataaatcgtttcccaatctcttttcgctgtcttccgatctcttttcagcggtttctcctcttcctttcagtcgcttatttagaaccattccaaacttctcttcattgttgaaaacttttttggcgcaagtttttatcgttatggggaagcccttttgtctgatctgtggtctaaaatcataaaagatcccttgtgcgactaaggctttctttgcatatttgtggttataaaatatttattggcacttagatattaggcctgtgtaattattctt Intra-Species Hit: Count: 2 Min: 1 Max: 532 Len: 532 Subject: NC_002950_PG1013_PG1014|acetyl-CoA hydrolase/transferase family protein:TPR domain protein|POSITIVE:POSITIVE|[1073371,1073902]|532 HSP 1 e-value: 1.0E-160 bit: 565.0 Len: 285 Query Start:248 Query End:532 Subject Strand: POSITIVE Subject Start: 248 Subject End: 532 .......................................................................................................................................................................................................................................................tcgttctgtatataaatcgtttcccaatctcttttcgctgtcttccgatctcttttcagcggtttctcctcttcctttcagtcgcttatttagaaccattccaaacttctcttcattgttgaaaacttttttggcgcaagtttttatcgttatggggaagcccttttgtctgatctgtggtctaaaatcataaaagatcccttgtgcgactaaggctttctttgcatatttgtggttataaaatatttattggcacttagatattaggcctgtgtaattattctt .......................................................................................................................................................................................................................................................tcgttctgtatataaatcgtttcccaatctcttttcgctgtcttccgatctcttttcagcggtttctcctcttcctttcagtcgcttatttagaaccattccaaacttctcttcattgttgaaaacttttttggcgcaagtttttatcgttatggggaagcccttttgtctgatctgtggtctaaaatcataaaagatcccttgtgcgactaaggctttctttgcatatttgtggttataaaatatttattggcacttagatattaggcctgtgtaattattctt HSP 2 e-value: 1.0E-101 bit: 371.0 Len: 187 Query Start:1 Query End:187 Subject Strand: POSITIVE Subject Start: 1 Subject End: 187 tcggtcgagcgaggacgcttgtgccgaatttgtgatgtacaagcgcgaataagatcccgacatttctgtcagatactaaggcactcgcccgagttcggtcgcgaacttgggtgggtgcctctttttatttcatcggtcgaagaggccttttctgcctctcgttttatatataaaacactttacaatc......................................................................................................................................................................................................................................................................................................................................................... tcggtcgagcgaggacgcttgtgccgaatttgtgatgtacaagcgcgaataagatcccgacatttctgtcagatactaaggcactcgcccgagttcggtcgcgaacttgggtgggtgcctctttttatttcatcggtcgaagaggccttttctgcctctcgttttatatataaaacactttacaatc......................................................................................................................................................................................................................................................................................................................................................... Subject: NC_002950_PG0903_PG0906|hypothetical protein:lipoprotein, putative|NEGATIVE:POSITIVE|[969731,970755]|1025 HSP 1 e-value: 3.0E-10 bit: 67.9 Len: 50 Query Start:330 Query End:379 Subject Strand: NEGATIVE Subject Start: 263 Subject End: 312 .........................................................................................................................................................................................................................................................................................................................................cgcttatttagaaccattccaaacttctcttcattgttgaaaactttttt......................................................................................................................................................... .........................................................................................................................................................................................................................................................................................................................................cgcttatttagaatcattccaaactcgtcttcgttgttgaaaactttttt......................................................................................................................................................... HSP 2 e-value: 8.0E-8 bit: 60.0 Len: 49 Query Start:77 Query End:125 Subject Strand: NEGATIVE Subject Start: 535 Subject End: 584 ............................................................................taaggcactcgcccgagttcggtcgcgaactt-gggtgggtgcctctttt....................................................................................................................................................................................................................................................................................................................................................................................................................... ............................................................................taaggcacccacccgagttcggtcgcaaacttcgggtgggtgcctctttt....................................................................................................................................................................................................................................................................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UCGGUCGAGCGAGGACGCUUGUGCCGAAUUUGUGAUGUACAAGCGCGAAUAAGAUCCCGACAUUUCUGUCAGAUACUAAGGCACUCGCCCGAGUUCGGUCGCGAACUUGGGUGGGUGCCUCUUUUUAUUUCAUCGGUCGAAGAGGCCUUUUCUGCCUCUCGUUUUAUAUAUAAAACACUUUACAAUCUAUAUAUUAAAUGAAAACGAUUUAUAUAUAAAUCGAAAAUGAUAAAUAUAUAAAUCGAAUUCGUUCUGUAUAUAAAUCGUUUCCCAAUCUCUUUUCGCUGUCUUCCGAUCUCUUUUCAGCGGUUUCUCCUCUUCCUUUCAGUCGCUUAUUUAGAACCAUUCCAAACUUCUCUUCAUUGUUGAAAACUUUUUUGGCGCAAGUUUUUAUCGUUAUGGGGAAGCCCUUUUGUCUGAUCUGUGGUCUAAAAUCAUAAAAGAUCCCUUGUGCGACUAAGGCUUUCUUUGCAUAUUUGUGGUUAUAAAAUAUUUAUUGGCACUUAGAUAUUAGGCCUGUGUAAUUAUUCUU (((((((((((....)))))).))))).((((((((.(((((.((((((..(((((..((((....)))).((((...(((((((((((((((((((....)))))))))))))))))))..............((.(((.(((((.......)))))..((((((....))))))...........(((((((..((((((..((((((((((((..(((......)))..))))))))))))..))))))..)))))))..)))...))..............))))....)))))...))).)))............((((..((((((...((((((.(((((((((((((((((....((.(((((((((.........))))))))).))....)))))))....))))...))...)))))))))).......(((....)))..))))))))))..............)))))))))))))....((((.(((.((........)))))...))))........ (-147.20) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AAGAAUAAUUACACAGGCCUAAUAUCUAAGUGCCAAUAAAUAUUUUAUAACCACAAAUAUGCAAAGAAAGCCUUAGUCGCACAAGGGAUCUUUUAUGAUUUUAGACCACAGAUCAGACAAAAGGGCUUCCCCAUAACGAUAAAAACUUGCGCCAAAAAAGUUUUCAACAAUGAAGAGAAGUUUGGAAUGGUUCUAAAUAAGCGACUGAAAGGAAGAGGAGAAACCGCUGAAAAGAGAUCGGAAGACAGCGAAAAGAGAUUGGGAAACGAUUUAUAUACAGAACGAAUUCGAUUUAUAUAUUUAUCAUUUUCGAUUUAUAUAUAAAUCGUUUUCAUUUAAUAUAUAGAUUGUAAAGUGUUUUAUAUAUAAAACGAGAGGCAGAAAAGGCCUCUUCGACCGAUGAAAUAAAAAGAGGCACCCACCCAAGUUCGCGACCGAACUCGGGCGAGUGCCUUAGUAUCUGACAGAAAUGUCGGGAUCUUAUUCGCGCUUGUACAUCACAAAUUCGGCACAAGCGUCCUCGCUCGACCGA .((((((.(((....(((((........)).)))..))).))))))..........................((((((((....((((((((((.((((((........))))))...))))))...))))............((((....(((((....((((((....))))))....)))))...))))........))))))))..((..((((((....(((((........((....)))))))..((((.(((((...((((((((((((..(((.(((..((((((((((((..(((......)))..))))))))))))..))).)))..))))))))))))....................((((((((.......))))).))).)))))..........(((((((.(.(((.((((((....)))))).))).).)))))))....(((((((....))))))).))))....((((((((.(............).)))))))).))).)))..)).. (-148.70) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 658 380 331 83 34 NC_002950:PG1357|5end_hypothetical_protein_1436458..1436688_NEGATIVE 620 130 81 88 41 NC_002950:PG1223|5end_hypothetical_protein_1299461..1299691_POSITIVE 544 380 331 53 4 NC_002950:PG0995|5end_hypothetical_protein_1055585..1055815_NEGATIVE 483 380 332 65 17 NC_002950:PG0773|5end_hypothetical_protein_825131..825361_POSITIVE 473 385 346 125 86 NC_002950:PG0609|5end_hypothetical_protein_663183..663413_POSITIVE 460 125 81 44 1 NC_002950:PG0371|5end_hypothetical_protein_404043..404273_POSITIVE 449 121 81 183 147 NC_002950:PG1943|5end_hypothetical_protein_2030260..2030490_NEGATIVE 447 117 73 135 96 NC_002950:PG1695|5end_hypothetical_protein_1779440..1779670_POSITIVE 416 329 283 77 24 NC_002950:PG1318|5end_RNA_polymerase_sigma-70_factor,_ECF_subfamily_1397768..1397998_NEGATIVE 414 146 103 58 17 NC_002950:PG1574|5end_hypothetical_protein_1652613..1652843_NEGATIVE 403 48 1 79 27 NC_002950:PG2038|5end_N-acetylmuramoyl-L-alanine_amidase,_putative_2138207..2138437_NEGATIVE 402 99 55 216 165 NC_002950:PG0053|5end_hypothetical_protein_65086..65316_NEGATIVE 400 118 81 163 123 NC_002950:PG0444|5end_oligopeptide_transporter,_OPT_family_483256..483486_POSITIVE 394 48 3 86 46 NC_002950:PG1576|5end_L-aspartate_oxidase_1653016..1653246_POSITIVE 390 160 113 100 38 NC_002950:PG0428|5end_hypothetical_protein_465977..466207_NEGATIVE 387 117 80 157 116 NC_002950:PG0221|5end_hypothetical_protein_255834..256064_NEGATIVE 386 156 112 54 12 NC_002950:PG1009|5end_hypothetical_protein_1068495..1068725_NEGATIVE 385 44 2 55 4 NC_002950:PG1922|5end_ribosomal_protein_L18_2017371..2017601_NEGATIVE 381 118 71 81 29 NC_002950:PG1580|5end_hypothetical_protein_1657499..1657729_POSITIVE 378 120 71 65 10 NC_002950:PG0325|5end_hypothetical_protein_359714..359944_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 546 120 76 53 10 NC_002950:PG1274|3end_elongation_factor_P_1352489..1352639_POSITIVE 483 380 332 58 10 NC_002950:PG0772|3end_hypothetical_protein_825204..825354_POSITIVE 482 246 201 46 1 NC_002950:PG0773|3end_hypothetical_protein_825348..825498_POSITIVE 472 120 79 55 16 NC_002950:PG1866|3end_hypothetical_protein_1964736..1964886_POSITIVE 467 120 76 53 10 NC_002950:PG0568|3end_elongation_factor_P_623999..624149_NEGATIVE 460 125 81 145 102 NC_002950:PG0371|3end_hypothetical_protein_404224..404374_POSITIVE 426 380 331 54 5 NC_002950:PG1868|3end_hypothetical_protein_1965098..1965248_NEGATIVE 425 360 313 149 94 NC_002950:PG0995|3end_hypothetical_protein_1055469..1055619_NEGATIVE 397 97 51 151 106 NC_002950:PG0492|3end_hypothetical_protein_534408..534558_NEGATIVE 391 140 91 80 21 NC_002950:PG0933|3end_translation_elongation_factor_G,_putative_992236..992386_POSITIVE 387 117 80 78 37 NC_002950:PG0222|3end_DNA-binding_protein,_histone-like_family_255913..256063_NEGATIVE 381 118 71 70 18 NC_002950:PG1579|3end_ATPase,_MoxR_family_1657568..1657718_POSITIVE 372 328 281 138 87 NC_002950:PG0658|3end_phosphatase,_YrbI_family_707798..707948_NEGATIVE 370 125 86 58 6 NC_002950:PG1473|3end_conjugative_transposon_protein_TraQ_1549761..1549911_NEGATIVE 366 119 71 147 104 NC_002950:PG1657|3end_methylmalonyl-CoA_mutase_1741571..1741721_POSITIVE 363 328 283 126 75 NC_002950:PG1302|3end_hypothetical_protein_1379939..1380089_NEGATIVE 354 102 63 122 73 NC_002950:PG1675|3end_hypothetical_protein_1760360..1760510_POSITIVE 353 120 79 110 58 NC_002950:PG2227|3end_hypothetical_protein_2342744..2342894_POSITIVE 350 160 118 113 64 NC_002950:PG1497|3end_DNA-binding_protein,_histone-like_family_1574635..1574785_POSITIVE 349 123 85 120 80 NC_002950:PG0323|3end_hypothetical_protein_357059..357209_NEGATIVE