Origin IGS: tgttttattctgtttttgttcgttttctgtttttttactcttatatcacgctgtctcttttggtgtatgctactcatcgagtctatattggcaagatgttttttgcttctcttttccctttttgcaatgcttttttcttgtttgacttctttttcctctatatcactttcgtctgattttggattccattgcttaataatcagcaatttaacctatgtcgatatgctgtattagtctgatagtacaccgcaaacatagcttacttgttcgaattgaccaaatattcagcgaaaaattttggactacctatcggaattcaatgctctcacccacgcaaagaatagcagcgatagggtcggaatgacattaatggccggagcgtgtggaacatcaacacaggcttgcgatttactataagagacctttgaacccagatttgtctttaggtcttacttttctaatgacagccattagcgatttttagcggtaattcaactctacattgaccgagaaacaaacgaaataccggctatatgcagagattgaaaaacgatcgtgcgattgccctgtcggataacaaagaaacgtttgttgcacttactattgtaattacagccaaggagttcgggagaattccttggctgcagtggggcgaagctttgtctgaaaaacgggcttcagcggaatgaatcgggataggggtagggctttggcctaagagcgtcagcccgatcgaatacgactgcttagcg .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 cgctaagcagtcgtattcgatcgggctgacgctcttaggccaaagccctacccctatcccgattcattccgctgaagcccgtttttcagacaaagcttcgccccactgcagccaaggaattctcccgaactccttggctgtaattacaatagtaagtgcaacaaacgtttctttgttatccgacagggcaatcgcacgatcgtttttcaatctctgcatatagccggtatttcgtttgtttctcggtcaatgtagagttgaattaccgctaaaaatcgctaatggctgtcattagaaaagtaagacctaaagacaaatctgggttcaaaggtctcttatagtaaatcgcaagcctgtgttgatgttccacacgctccggccattaatgtcattccgaccctatcgctgctattctttgcgtgggtgagagcattgaattccgataggtagtccaaaatttttcgctgaatatttggtcaattcgaacaagtaagctatgtttgcggtgtactatcagactaatacagcatatcgacataggttaaattgctgattattaagcaatggaatccaaaatcagacgaaagtgatatagaggaaaaagaagtcaaacaagaaaaaagcattgcaaaaagggaaaagagaagcaaaaaacatcttgccaatatagactcgatgagtagcatacaccaaaagagacagcgtgatataagagtaaaaaaacagaaaacgaacaaaaacagaataaaaca Mask Tandem Repeat Region ================================================ tgttttattctgtttttgttcgttttctgtttttttactcttatatcacgctgtctcttttggtgtatgctactcatcgagtctatattggcaagatgttttttgcttctcttttccctttttgcaatgcttttttcttgtttgacttctttttcctctatatcactttcgtctgattttggattccattgcttaataatcagcaatttaacctatgtcgatatgctgtattagtctgatagtacaccgcaaacatagcttacttgttcgaattgaccaaatattcagcgaaaaattttggactacctatcggaattcaatgctctcacccacgcaaagaatagcagcgatagggtcggaatgacattaatggccggagcgtgtggaacatcaacacaggcttgcgatttactataagagacctttgaacccagatttgtctttaggtcttacttttctaatgacagccattagcgatttttagcggtaattcaactctacattgaccgagaaacaaacgaaataccggctatatgcagagattgaaaaacgatcgtgcgattgccctgtcggataacaaagaaacgtttgttgcacttactattgtaattacagccaaggagttcgggagaattccttggctgcagtggggcgaagctttgtctgaaaaacgggcttcagcggaatgaatcgggataggggtagggctttggcctaagagcgtcagcccgatcgaatacgactgcttagcg Find is-nt database================================================ Query_seq: PG1010:PG1012|PG1010:PG1012:ABC transporter, ATP-binding protein:tRNA-i(6)A37 modification enzyme MiaB:<-<-:1069427..1070178 752 tgttttattctgtttttgttcgttttctgtttttttactcttatatcacgctgtctcttttggtgtatgctactcatcgagtctatattggcaagatgttttttgcttctcttttccctttttgcaatgcttttttcttgtttgacttctttttcctctatatcactttcgtctgattttggattccattgcttaataatcagcaatttaacctatgtcgatatgctgtattagtctgatagtacaccgcaaacatagcttacttgttcgaattgaccaaatattcagcgaaaaattttggactacctatcggaattcaatgctctcacccacgcaaagaatagcagcgatagggtcggaatgacattaatggccggagcgtgtggaacatcaacacaggcttgcgatttactataagagacctttgaacccagatttgtctttaggtcttacttttctaatgacagccattagcgatttttagcggtaattcaactctacattgaccgagaaacaaacgaaataccggctatatgcagagattgaaaaacgatcgtgcgattgccctgtcggataacaaagaaacgtttgttgcacttactattgtaattacagccaaggagttcgggagaattccttggctgcagtggggcgaagctttgtctgaaaaacgggcttcagcggaatgaatcgggataggggtagggctttggcctaagagcgtcagcccgatcgaatacgactgcttagcg Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PG1010:PG1012|PG1010:PG1012:ABC transporter, ATP-binding protein:tRNA-i(6)A37 modification enzyme MiaB:<-<-:1069427..1070178 752 tgttttattctgtttttgttcgttttctgtttttttactcttatatcacgctgtctcttttggtgtatgctactcatcgagtctatattggcaagatgttttttgcttctcttttccctttttgcaatgcttttttcttgtttgacttctttttcctctatatcactttcgtctgattttggattccattgcttaataatcagcaatttaacctatgtcgatatgctgtattagtctgatagtacaccgcaaacatagcttacttgttcgaattgaccaaatattcagcgaaaaattttggactacctatcggaattcaatgctctcacccacgcaaagaatagcagcgatagggtcggaatgacattaatggccggagcgtgtggaacatcaacacaggcttgcgatttactataagagacctttgaacccagatttgtctttaggtcttacttttctaatgacagccattagcgatttttagcggtaattcaactctacattgaccgagaaacaaacgaaataccggctatatgcagagattgaaaaacgatcgtgcgattgccctgtcggataacaaagaaacgtttgttgcacttactattgtaattacagccaaggagttcgggagaattccttggctgcagtggggcgaagctttgtctgaaaaacgggcttcagcggaatgaatcgggataggggtagggctttggcctaagagcgtcagcccgatcgaatacgactgcttagcg Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PG1010:PG1012|PG1010:PG1012:ABC transporter, ATP-binding protein:tRNA-i(6)A37 modification enzyme MiaB:<-<-:1069427..1070178 752 tgttttattctgtttttgttcgttttctgtttttttactcttatatcacgctgtctcttttggtgtatgctactcatcgagtctatattggcaagatgttttttgcttctcttttccctttttgcaatgcttttttcttgtttgacttctttttcctctatatcactttcgtctgattttggattccattgcttaataatcagcaatttaacctatgtcgatatgctgtattagtctgatagtacaccgcaaacatagcttacttgttcgaattgaccaaatattcagcgaaaaattttggactacctatcggaattcaatgctctcacccacgcaaagaatagcagcgatagggtcggaatgacattaatggccggagcgtgtggaacatcaacacaggcttgcgatttactataagagacctttgaacccagatttgtctttaggtcttacttttctaatgacagccattagcgatttttagcggtaattcaactctacattgaccgagaaacaaacgaaataccggctatatgcagagattgaaaaacgatcgtgcgattgccctgtcggataacaaagaaacgtttgttgcacttactattgtaattacagccaaggagttcgggagaattccttggctgcagtggggcgaagctttgtctgaaaaacgggcttcagcggaatgaatcgggataggggtagggctttggcctaagagcgtcagcccgatcgaatacgactgcttagcg Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 tgttttattctgtttttgttcgttttctgtttttttactcttatatcacgctgtctcttttggtgtatgctactcatcgagtctatattggcaagatgttttttgcttctcttttccctttttgcaatgcttttttcttgtttgacttctttttcctctatatcactttcgtctgattttggattccattgcttaataatcagcaatttaacctatgtcgatatgctgtattagtctgatagtacaccgcaaacatagcttacttgttcgaattgaccaaatattcagcgaaaaattttggactacctatcggaattcaatgctctcacccacgcaaagaatagcagcgatagggtcggaatgacattaatggccggagcgtgtggaacatcaacacaggcttgcgatttactataagagacctttgaacccagatttgtctttaggtcttacttttctaatgacagccattagcgatttttagcggtaattcaactctacattgaccgagaaacaaacgaaataccggctatatgcagagattgaaaaacgatcgtgcgattgccctgtcggataacaaagaaacgtttgttgcacttactattgtaattacagccaaggagttcgggagaattccttggctgcagtggggcgaagctttgtctgaaaaacgggcttcagcggaatgaatcgggataggggtagggctttggcctaagagcgtcagcccgatcgaatacgactgcttagcg Predict ORF larger than 30AA ================================================ Protein_Len: 49 Strand: + Start: 27 End: 173 .......................... M F F Y S Y I T L S L L V Y A T H R V Y I G K M F F A S L F P F C N A F F L F D F F F L Y I T F V ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 7 End: 231 ...... M L F L F V F C F F T L I S R C L F W C M L L I E S I L A R C F L L L F S L F A M L F S C L T S F S S I S L S S D F G F ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 49 Strand: + Start: 215 End: 361 ...................................................................................................................................................................................................................... M S I C C I S L I V H R K H S L L V R I D Q I F S E K F W T T Y R N S M L S P T Q R I A A I G S E ....................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 44 Strand: + Start: 283 End: 414 .......................................................................................................................................................................................................................................................................................... M Q R K I L D Y L S E F N A L T H A K N S S D R V G M T L M A G A C G T S T Q A C D L L .................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 33 Strand: + Start: 383 End: 481 .............................................................................................................................................................................................................................................................................................................................................................................................. M E H Q H R L A I Y Y K R P L N P D L S L G L T F L M T A I S D F ............................................................................................................................................................................................................................................................................... Protein_Len: 51 Strand: + Start: 534 End: 686 ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M Q R L K N D R A I A L S D N K E T F V A L T I V I T A K E F G R I P W L Q W G E A L S E K R A S A E .................................................................. Protein_Len: 60 Strand: - Start: 533 End: 733 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... R A I A R D S L L S V N T A S V I T I V A L S N P L I G Q S C H P S A K D S F R A E A S H I P I P T P S Q G L L T L G M ................... Protein_Len: 49 Strand: - Start: 501 End: 647 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M S R S V F S I G A I H L S Q F V I T R N G Q R I V F F R K N C K S N Y N C G L L E P S N R P Q M ......................................................................................................... Protein_Len: 38 Strand: - Start: 484 End: 597 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... R Y N L E V N V S F C V F Y R S Y A S I S F R D H S Q G T P Y C L F T Q Q M ........................................................................................................................................................... Protein_Len: 36 Strand: - Start: 329 End: 436 ........................................................................................................................................................................................................................................................................................................................................ G R L S Y C R Y P R F S M L P R L T H F M L V P K R N V I L S R Q V W M ............................................................................................................................................................................................................................................................................................................................ Protein_Len: 43 Strand: - Start: 306 End: 434 ................................................................................................................................................................................................................................................................................................................. R D S N L A R V W A F F L L S L T P I V N I A P A H P V D V C A Q S K S Y S V K S G M .............................................................................................................................................................................................................................................................................................................................. Protein_Len: 60 Strand: - Start: 3 End: 206 .. Q K K V R I D R Q R K Q H I S S M S D I N A L H K K S R K E R K A I S K E Q K V E K E E I D S E D S K P N W Q K I I L M .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. tgttttattctgtttttgttcgttttctgtttttttactcttatatcacgctgtctcttttggtgtatgctactcatcgagtctatattggcaagatgttttttgcttctcttttccctttttgcaatgcttttttcttgtttgacttctttttcctctatatcactttcgtctgattttggattccattgcttaataatcagcaatttaacctatgtcgatatgctgtattagtctgatagtacaccgcaaacatagcttacttgttcgaattgaccaaatattcagcgaaaaattttggactacctatcggaattcaatgctctcacccacgcaaagaatagcagcgatagggtcggaatgacattaatggccggagcgtgtggaacatcaacacaggcttgcgatttactataagagacctttgaacccagatttgtctttaggtcttacttttctaatgacagccattagcgatttttagcggtaattcaactctacattgaccgagaaacaaacgaaataccggctatatgcagagattgaaaaacgatcgtgcgattgccctgtcggataacaaagaaacgtttgttgcacttactattgtaattacagccaaggagttcgggagaattccttggctgcagtggggcgaagctttgtctgaaaaacgggcttcagcggaatgaatcgggataggggtagggctttggcctaagagcgtcagcccgatcgaatacgactgcttagcg Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ tgttttattctgtttttgttcgttttctgtttttttactcttatatcacgctgtctcttttggtgtatgctactcatcgagtctatattggcaagatgttttttgcttctcttttccctttttgcaatgcttttttcttgtttgacttctttttcctctatatcactttcgtctgattttggattccattgcttaataatcagcaatttaacctatgtcgatatgctgtattagtctgatagtacaccgcaaacatagcttacttgttcgaattgaccaaatattcagcgaaaaattttggactacctatcggaattcaatgctctcacccacgcaaagaatagcagcgatagggtcggaatgacattaatggccggagcgtgtggaacatcaacacaggcttgcgatttactataagagacctttgaacccagatttgtctttaggtcttacttttctaatgacagccattagcgatttttagcggtaattcaactctacattgaccgagaaacaaacgaaataccggctatatgcagagattgaaaaacgatcgtgcgattgccctgtcggataacaaagaaacgtttgttgcacttactattgtaattacagccaaggagttcgggagaattccttggctgcagtggggcgaagctttgtctgaaaaacgggcttcagcggaatgaatcgggataggggtagggctttggcctaagagcgtcagcccgatcgaatacgactgcttagcg Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 100 HP_score: -16.0 Tail_Score: -2.74012 Start: 613 End: 644 Full_Region: agcttcgccccactg cagccaaggaattc tccc gaactccttggctg taattacaatagtaa ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cagccaaggaattctcccgaactccttggctg............................................................................................................ TransTerm Strand: - Conf: 83 HP_score: -12.8 Tail_Score: -2.91452 Start: 615 End: 642 Full_Region: cttcgccccactgca gccaaggaattc tccc gaactccttggc tgtaattacaatagt ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gccaaggaattctcccgaactccttggc.............................................................................................................. Find igs database================================================ Query_seq: PG1010:PG1012|PG1010:PG1012:ABC transporter, ATP-binding protein:tRNA-i(6)A37 modification enzyme MiaB:<-<-:1069427..1070178 752 tgttttattctgtttttgttcgttttctgtttttttactcttatatcacgctgtctcttttggtgtatgctactcatcgagtctatattggcaagatgttttttgcttctcttttccctttttgcaatgcttttttcttgtttgacttctttttcctctatatcactttcgtctgattttggattccattgcttaataatcagcaatttaacctatgtcgatatgctgtattagtctgatagtacaccgcaaacatagcttacttgttcgaattgaccaaatattcagcgaaaaattttggactacctatcggaattcaatgctctcacccacgcaaagaatagcagcgatagggtcggaatgacattaatggccggagcgtgtggaacatcaacacaggcttgcgatttactataagagacctttgaacccagatttgtctttaggtcttacttttctaatgacagccattagcgatttttagcggtaattcaactctacattgaccgagaaacaaacgaaataccggctatatgcagagattgaaaaacgatcgtgcgattgccctgtcggataacaaagaaacgtttgttgcacttactattgtaattacagccaaggagttcgggagaattccttggctgcagtggggcgaagctttgtctgaaaaacgggcttcagcggaatgaatcgggataggggtagggctttggcctaagagcgtcagcccgatcgaatacgactgcttagcg Intra-Species Hit: Count: 1 Min: 37 Max: 752 Len: 716 Subject: NC_002950_PG1010_PG1012|ABC transporter, ATP-binding protein:tRNA-i(6)A37 modification enzyme MiaB|NEGATIVE:NEGATIVE|[1069427,1070178]|752 HSP 1 e-value: 0.0 bit: 1132.0 Len: 571 Query Start:182 Query End:752 Subject Strand: POSITIVE Subject Start: 182 Subject End: 752 .....................................................................................................................................................................................gattccattgcttaataatcagcaatttaacctatgtcgatatgctgtattagtctgatagtacaccgcaaacatagcttacttgttcgaattgaccaaatattcagcgaaaaattttggactacctatcggaattcaatgctctcacccacgcaaagaatagcagcgatagggtcggaatgacattaatggccggagcgtgtggaacatcaacacaggcttgcgatttactataagagacctttgaacccagatttgtctttaggtcttacttttctaatgacagccattagcgatttttagcggtaattcaactctacattgaccgagaaacaaacgaaataccggctatatgcagagattgaaaaacgatcgtgcgattgccctgtcggataacaaagaaacgtttgttgcacttactattgtaattacagccaaggagttcgggagaattccttggctgcagtggggcgaagctttgtctgaaaaacgggcttcagcggaatgaatcgggataggggtagggctttggcctaagagcgtcagcccgatcgaatacgactgcttagcg .....................................................................................................................................................................................gattccattgcttaataatcagcaatttaacctatgtcgatatgctgtattagtctgatagtacaccgcaaacatagcttacttgttcgaattgaccaaatattcagcgaaaaattttggactacctatcggaattcaatgctctcacccacgcaaagaatagcagcgatagggtcggaatgacattaatggccggagcgtgtggaacatcaacacaggcttgcgatttactataagagacctttgaacccagatttgtctttaggtcttacttttctaatgacagccattagcgatttttagcggtaattcaactctacattgaccgagaaacaaacgaaataccggctatatgcagagattgaaaaacgatcgtgcgattgccctgtcggataacaaagaaacgtttgttgcacttactattgtaattacagccaaggagttcgggagaattccttggctgcagtggggcgaagctttgtctgaaaaacgggcttcagcggaatgaatcgggataggggtagggctttggcctaagagcgtcagcccgatcgaatacgactgcttagcg HSP 2 e-value: 1.0E-26 bit: 123.0 Len: 62 Query Start:37 Query End:98 Subject Strand: POSITIVE Subject Start: 37 Subject End: 98 ....................................actcttatatcacgctgtctcttttggtgtatgctactcatcgagtctatattggcaagatg.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ....................................actcttatatcacgctgtctcttttggtgtatgctactcatcgagtctatattggcaagatg.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ ACUCUUAUAUCACGCUGUCUCUUUUGGUGUAUGCUACUCAUCGAGUCUAUAUUGGCAAGAUGUUUUUUGCUUCUCUUUUCCCUUUUUGCAAUGCUUUUUUCUUGUUUGACUUCUUUUUCCUCUAUAUCACUUUCGUCUGAUUUUGGAUUCCAUUGCUUAAUAAUCAGCAAUUUAACCUAUGUCGAUAUGCUGUAUUAGUCUGAUAGUACACCGCAAACAUAGCUUACUUGUUCGAAUUGACCAAAUAUUCAGCGAAAAAUUUUGGACUACCUAUCGGAAUUCAAUGCUCUCACCCACGCAAAGAAUAGCAGCGAUAGGGUCGGAAUGACAUUAAUGGCCGGAGCGUGUGGAACAUCAACACAGGCUUGCGAUUUACUAUAAGAGACCUUUGAACCCAGAUUUGUCUUUAGGUCUUACUUUUCUAAUGACAGCCAUUAGCGAUUUUUAGCGGUAAUUCAACUCUACAUUGACCGAGAAACAAACGAAAUACCGGCUAUAUGCAGAGAUUGAAAAACGAUCGUGCGAUUGCCCUGUCGGAUAACAAAGAAACGUUUGUUGCACUUACUAUUGUAAUUACAGCCAAGGAGUUCGGGAGAAUUCCUUGGCUGCAGUGGGGCGAAGCUUUGUCUGAAAAACGGGCUUCAGCGGAAUGAAUCGGGAUAGGGGUAGGGCUUUGGCCUAAGAGCGUCAGCCCGAUCGAAUACGACUGCUUAGCG ...........((((((.......))))))..((((..(((((..((.((...(((..(((((((((.....(((((.((((..((((...((((.....(((((((.............((((......(((((.((((.(((((.....((((((........)))))).(((.((((((.....((((((((((......)))))))..))).)))))).)))..............)))))...))))))))).....)))).......(((((...(((.(((.((.(((.(((..(.(((((...(((((((((.............((((((((.((.((((.........)))).))....((.(((((....(((((((..(.((........)).)..)))))))......((((((.....))))))...........))))).))..(((..........)))..............))))))))..(((..(((((.....))))).)))....)))))))))..(((((((......)))))))......))))).).....((((((((((((((....))))))))))))))..)))))).))))).)))))))).)))))))....))))...))))..)))).)))))..((((....))))))))))))).)))..)).))...))).))..)))). (-194.60) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ CGCUAAGCAGUCGUAUUCGAUCGGGCUGACGCUCUUAGGCCAAAGCCCUACCCCUAUCCCGAUUCAUUCCGCUGAAGCCCGUUUUUCAGACAAAGCUUCGCCCCACUGCAGCCAAGGAAUUCUCCCGAACUCCUUGGCUGUAAUUACAAUAGUAAGUGCAACAAACGUUUCUUUGUUAUCCGACAGGGCAAUCGCACGAUCGUUUUUCAAUCUCUGCAUAUAGCCGGUAUUUCGUUUGUUUCUCGGUCAAUGUAGAGUUGAAUUACCGCUAAAAAUCGCUAAUGGCUGUCAUUAGAAAAGUAAGACCUAAAGACAAAUCUGGGUUCAAAGGUCUCUUAUAGUAAAUCGCAAGCCUGUGUUGAUGUUCCACACGCUCCGGCCAUUAAUGUCAUUCCGACCCUAUCGCUGCUAUUCUUUGCGUGGGUGAGAGCAUUGAAUUCCGAUAGGUAGUCCAAAAUUUUUCGCUGAAUAUUUGGUCAAUUCGAACAAGUAAGCUAUGUUUGCGGUGUACUAUCAGACUAAUACAGCAUAUCGACAUAGGUUAAAUUGCUGAUUAUUAAGCAAUGGAAUCCAAAAUCAGACGAAAGUGAUAUAGAGGAAAAAGAAGUCAAACAAGAAAAAAGCAUUGCAAAAAGGGAAAAGAGAAGCAAAAAACAUCUUGCCAAUAUAGACUCGAUGAGUAGCAUACACCAAAAGAGACAGCGUGAUAUAAGAGU ..............((((.((((.((((...(((((.(((....)))......((((.............((.(((((..(((.....)))...))))))).....((((((((((((.(((....))).))))))))))))......))))...((((.((....((((((((....(((......(((((.((..........(((((.((((((((...(((((...............)))))..)))))))))))))...((.(((...((((((....(((((.(((((.......((((((...(((........)))...))))))((.((((((.(((((((((..((.....(((((.....(((.(((...(((((((...((..((((...(((...........))).))))..)))))))))...)))...))).(.(((((((((......)))).))))).).....))))).....))...))))))))).)))))).)).))))))))))...........((((..((((((........))))))..))))..............)))))).))).))........................))))))).....)))...))))))))......((((..(.(......).)..)))).)).)))).......))))).)))).))))....)))) (-184.66) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 931 60 11 187 138 NC_002950:PG1010|5end_ABC_transporter,_ATP-binding_protein_1069336..1069566_NEGATIVE 423 695 651 98 52 NC_002950:PG1522|5end_mandelate_racemase/muconate_lactonizing_enzyme_family_protein_1600170..1600400_NEGATIVE 419 629 588 218 178 NC_002950:PG0201|5end_ribonuclease_P_238770..239000_NEGATIVE 393 229 181 101 53 NC_002950:PG1661|5end_hypothetical_protein_1744468..1744698_POSITIVE 391 706 662 49 2 NC_002950:PG2037|5end_hypothetical_protein_2137812..2138042_NEGATIVE 391 677 636 67 24 NC_002950:PG0128|5end_hypothetical_protein_149594..149824_POSITIVE 380 706 664 230 180 NC_002950:PG1932|5end_ribosomal_protein_S3_2021610..2021840_NEGATIVE 380 630 589 190 145 NC_002950:PG1621|5end_hypothetical_protein_1701431..1701661_NEGATIVE 378 710 664 67 14 NC_002950:PG2177|5end_Na(+)-translocating_NADH-quinone_reductase_subunit_F_2286504..2286734_NEGATIVE 378 349 309 77 44 NC_002950:PG1769|5end_hypothetical_protein_1856607..1856837_POSITIVE 377 539 491 188 141 NC_002950:PG1787|5end_hypothetical_protein_1875908..1876138_NEGATIVE 376 629 584 230 168 NC_002950:PG0738|5end_cytidine/deoxycytidylate_deaminase_family_protein_786463..786693_POSITIVE 370 640 591 153 107 NC_002950:PG0800|5end_hypothetical_protein_856278..856508_NEGATIVE 369 640 598 226 181 NC_002950:PG2126|5end_conserved_hypothetical_protein_TIGR00044_2233112..2233342_NEGATIVE 368 658 613 187 142 NC_002950:PG0638|5end_tetraacyldisaccharide_4'-kinase_691183..691413_NEGATIVE 366 696 651 168 115 NC_002950:PG2107|5end_thiamine_biosynthesis_protein_ThiH_2216658..2216888_NEGATIVE 366 693 654 228 183 NC_002950:PG1996|5end_deoxyribose-phosphate_aldolase_2085921..2086151_POSITIVE 366 709 668 46 3 NC_002950:PG0482|5end_hypothetical_protein_523129..523359_NEGATIVE 365 700 654 71 8 NC_002950:PG1601|5end_biotin--acetyl-CoA-carboxylase_ligase_1681792..1682022_NEGATIVE 365 699 655 175 122 NC_002950:PG0671|5end_iron_compound_ABC_transporter,_permease_protein_721888..722118_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 423 695 651 98 52 NC_002950:PG1523|3end_naphthoate_synthase_1600170..1600320_NEGATIVE 391 706 662 52 5 NC_002950:PG2038|3end_N-acetylmuramoyl-L-alanine_amidase,_putative_2137809..2137959_NEGATIVE 391 677 636 60 17 NC_002950:PG0127|3end_ferrochelatase_149667..149817_POSITIVE 390 618 579 111 68 NC_002950:PG1104|3end_hypothetical_protein_1175782..1175932_POSITIVE 384 696 655 100 39 NC_002950:PG1672|3end_hypothetical_protein_1757884..1758034_POSITIVE 384 696 655 100 39 NC_002950:PG1267|3end_hypothetical_protein_1347213..1347363_POSITIVE 384 696 655 100 39 NC_002950:PG0100|3end_hypothetical_protein_119052..119202_NEGATIVE 379 679 636 63 17 NC_002950:PG1602|3end_hypothetical_protein_1681764..1681914_NEGATIVE 378 660 611 84 40 NC_002950:PG1954|3end_NAD_dependent_epimerase/reductase-related_protein_2045612..2045762_POSITIVE 378 349 309 72 39 NC_002950:PG1768|3end_magnesium_chelatase,_subunit_D/I_family_1856682..1856832_POSITIVE 366 640 591 145 82 NC_002950:PG1677|3end_phosphoglycerate_kinase_1763678..1763828_POSITIVE 366 659 613 98 30 NC_002950:PG1117|3end_MATE_efflux_family_protein_1191541..1191691_POSITIVE 363 698 655 118 70 NC_002950:PG1218|3end_hypothetical_protein_1296475..1296625_POSITIVE 362 350 309 130 92 NC_002950:PG1040|3end_transcriptional_regulator,_putative_1107485..1107635_NEGATIVE 357 640 591 61 13 NC_002950:PG0593|3end_htrA_protein_651938..652088_POSITIVE 355 700 655 63 6 NC_002950:PG1695|3end_hypothetical_protein_1779711..1779861_POSITIVE 355 698 653 116 62 NC_002950:PG0021|3end_TIM-barrel_protein,_putative,_NifR3_family_24122..24272_NEGATIVE 349 688 644 86 48 NC_002950:PG2070|3end_hypothetical_protein_2166547..2166697_POSITIVE 349 709 662 114 71 NC_002950:PG1808|3end_guanosine-3',5'-bis(diphosphate)_3'-pyrophosphohydrolase_1902955..1903105_NEGATIVE 349 54 12 151 107 NC_002950:PG0328|3end_imidazolonepropionase_362155..362305_NEGATIVE