Origin IGS: caaccgacttggtaccgaaacctcttcgtccgttatgcgccacatatctcgggtgacaaaaagaatcattcggtttatccggatggaccaccgcctgaaaaagcccttatcgttctttttctctttctcgtcaatgctctctttcatacaaatcaatgagttaaataccgttggtaaatcaatgtccggcatatctcaccccaaggagattgccgaagaaagaggaaaaaagcagcagatctgtaagccgggttctgtactcacggccacacgtagccagagcgtctgtcatttatcttggccgtgcgtcaccgcatggctccagcgatctaccccccggcatcgggcgagccaccctacatgcgccggtatacatgatcttacaacccatcagacgtacggcatgcagcgtcaccgctgcatccggtaggctcttaccccaccttctcacccttaccctccacgtagtccgtaccgaagcacagacaactcatggaaaatggcggtcattctcttctacgctcctttaccctcacgagtaacttcctgttaggaaggatggtgctctgcgttgcccggacgttcctcccactctcgaaagagtgagcgacagaccgatctgctgcttatcttttctttcgtcttctatatc .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 gatatagaagacgaaagaaaagataagcagcagatcggtctgtcgctcactctttcgagagtgggaggaacgtccgggcaacgcagagcaccatccttcctaacaggaagttactcgtgagggtaaaggagcgtagaagagaatgaccgccattttccatgagttgtctgtgcttcggtacggactacgtggagggtaagggtgagaaggtggggtaagagcctaccggatgcagcggtgacgctgcatgccgtacgtctgatgggttgtaagatcatgtataccggcgcatgtagggtggctcgcccgatgccggggggtagatcgctggagccatgcggtgacgcacggccaagataaatgacagacgctctggctacgtgtggccgtgagtacagaacccggcttacagatctgctgcttttttcctctttcttcggcaatctccttggggtgagatatgccggacattgatttaccaacggtatttaactcattgatttgtatgaaagagagcattgacgagaaagagaaaaagaacgataagggctttttcaggcggtggtccatccggataaaccgaatgattctttttgtcacccgagatatgtggcgcataacggacgaagaggtttcggtaccaagtcggttg Mask Tandem Repeat Region ================================================ caaccgacttggtaccgaaacctcttcgtccgttatgcgccacatatctcgggtgacaaaaagaatcattcggtttatccggatggaccaccgcctgaaaaagcccttatcgttctttttctctttctcgtcaatgctctctttcatacaaatcaatgagttaaataccgttggtaaatcaatgtccggcatatctcaccccaaggagattgccgaagaaagaggaaaaaagcagcagatctgtaagccgggttctgtactcacggccacacgtagccagagcgtctgtcatttatcttggccgtgcgtcaccgcatggctccagcgatctaccccccggcatcgggcgagccaccctacatgcgccggtatacatgatcttacaacccatcagacgtacggcatgcagcgtcaccgctgcatccggtaggctcttaccccaccttctcacccttaccctccacgtagtccgtaccgaagcacagacaactcatggaaaatggcggtcattctcttctacgctcctttaccctcacgagtaacttcctgttaggaaggatggtgctctgcgttgcccggacgttcctcccactctcgaaagagtgagcgacagaccgatctgctgcttatcttttctttcgtcttctatatc Find is-nt database================================================ Query_seq: PG0958:PG0959|PG0958:PG0959:ribonuclease BN, putative:ATP-binding protein, Mrp/Nbp35 family:<-<-:1019461..1020112 652 caaccgacttggtaccgaaacctcttcgtccgttatgcgccacatatctcgggtgacaaaaagaatcattcggtttatccggatggaccaccgcctgaaaaagcccttatcgttctttttctctttctcgtcaatgctctctttcatacaaatcaatgagttaaataccgttggtaaatcaatgtccggcatatctcaccccaaggagattgccgaagaaagaggaaaaaagcagcagatctgtaagccgggttctgtactcacggccacacgtagccagagcgtctgtcatttatcttggccgtgcgtcaccgcatggctccagcgatctaccccccggcatcgggcgagccaccctacatgcgccggtatacatgatcttacaacccatcagacgtacggcatgcagcgtcaccgctgcatccggtaggctcttaccccaccttctcacccttaccctccacgtagtccgtaccgaagcacagacaactcatggaaaatggcggtcattctcttctacgctcctttaccctcacgagtaacttcctgttaggaaggatggtgctctgcgttgcccggacgttcctcccactctcgaaagagtgagcgacagaccgatctgctgcttatcttttctttcgtcttctatatc Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PG0958:PG0959|PG0958:PG0959:ribonuclease BN, putative:ATP-binding protein, Mrp/Nbp35 family:<-<-:1019461..1020112 652 caaccgacttggtaccgaaacctcttcgtccgttatgcgccacatatctcgggtgacaaaaagaatcattcggtttatccggatggaccaccgcctgaaaaagcccttatcgttctttttctctttctcgtcaatgctctctttcatacaaatcaatgagttaaataccgttggtaaatcaatgtccggcatatctcaccccaaggagattgccgaagaaagaggaaaaaagcagcagatctgtaagccgggttctgtactcacggccacacgtagccagagcgtctgtcatttatcttggccgtgcgtcaccgcatggctccagcgatctaccccccggcatcgggcgagccaccctacatgcgccggtatacatgatcttacaacccatcagacgtacggcatgcagcgtcaccgctgcatccggtaggctcttaccccaccttctcacccttaccctccacgtagtccgtaccgaagcacagacaactcatggaaaatggcggtcattctcttctacgctcctttaccctcacgagtaacttcctgttaggaaggatggtgctctgcgttgcccggacgttcctcccactctcgaaagagtgagcgacagaccgatctgctgcttatcttttctttcgtcttctatatc Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PG0958:PG0959|PG0958:PG0959:ribonuclease BN, putative:ATP-binding protein, Mrp/Nbp35 family:<-<-:1019461..1020112 652 caaccgacttggtaccgaaacctcttcgtccgttatgcgccacatatctcgggtgacaaaaagaatcattcggtttatccggatggaccaccgcctgaaaaagcccttatcgttctttttctctttctcgtcaatgctctctttcatacaaatcaatgagttaaataccgttggtaaatcaatgtccggcatatctcaccccaaggagattgccgaagaaagaggaaaaaagcagcagatctgtaagccgggttctgtactcacggccacacgtagccagagcgtctgtcatttatcttggccgtgcgtcaccgcatggctccagcgatctaccccccggcatcgggcgagccaccctacatgcgccggtatacatgatcttacaacccatcagacgtacggcatgcagcgtcaccgctgcatccggtaggctcttaccccaccttctcacccttaccctccacgtagtccgtaccgaagcacagacaactcatggaaaatggcggtcattctcttctacgctcctttaccctcacgagtaacttcctgttaggaaggatggtgctctgcgttgcccggacgttcctcccactctcgaaagagtgagcgacagaccgatctgctgcttatcttttctttcgtcttctatatc Intra-Species Hit: Count: 0 Inter-species Hit: Count: 1 Min: 288 Max: 588 Len: 301 Subject: UniRef90_Q64SN1 Cluster: Hypothetical protein; n=1; Bacteroides fragilis|Rep: Hypothetical protein - Bacteroides fragilis HSP 1 e-value: 3.0E-14 bit: 52.4 Len: 162 Query Start:427 Query End:588 Subject Strand: null Subject Start: 49 Subject End: 93 .......................................................................................................................................................................................................................................................................................................................................................................................................................................... V G S Y P T F S P L P S T * S V P K H R Q L M E N G G H S L L R S F T L T S N F L L G R M V L C V A R T F L ................................................................ .......................................................................................................................................................................................................................................................................................................................................................................................................................................... V G S Y S T F S P L P - - - - L P G G R - - - - - G G S F L L R Y S T L T D S F L L G S R M L C V A R T F L ................................................................ HSP 2 e-value: 3.0E-14 bit: 48.9 Len: 129 Query Start:288 Query End:416 Subject Strand: null Subject Start: 3 Subject End: 45 ............................................................................................................................................................................................................................................................................................... V I Y L G R A S P H G S S D L P P G I G R A T L H A P V Y M I L Q P I R R T A C S V T ............................................................................................................................................................................................................................................ ............................................................................................................................................................................................................................................................................................... V I Y L S G V S P H H F S G L P S D M E R A T L I A P V Y M T L Q L L R R T A R Y V T ............................................................................................................................................................................................................................................ caaccgacttggtaccgaaacctcttcgtccgttatgcgccacatatctcgggtgacaaaaagaatcattcggtttatccggatggaccaccgcctgaaaaagcccttatcgttctttttctctttctcgtcaatgctctctttcatacaaatcaatgagttaaataccgttggtaaatcaatgtccggcatatctcaccccaaggagattgccgaagaaagaggaaaaaagcagcagatctgtaagccgggttctgtactcacggccacacgtagccagagcgtctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngctgcatccgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccactctcgaaagagtgagcgacagaccgatctgctgcttatcttttctttcgtcttctatatc Predict ORF larger than 30AA ================================================ Protein_Len: 37 Strand: + Start: 46 End: 156 ............................................. M S G D K K N H S V Y P D G P P P E K A L I V L F L F L V N A L F H T N Q ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 30 Strand: + Start: 286 End: 375 ............................................................................................................................................................................................................................................................................................. M S F I L A V R H R M A P A I Y P P A S G E P P Y M R R Y T ..................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 35 End: 427 .................................. M R H I S R V T K R I I R F I R M D H R L K K P L S F F F S F S S M L S F I Q I N E L N T V G K S M S G I S H P K E I A ................................................................................................................................................................................................................................. Protein_Len: 60 Strand: + Start: 165 End: 539 .................................................................................................................................................................... M P L V N Q C P A Y L T P R R L P K K E E K S S R S V S R V L Y S R P H V A R A S V I Y L G R A S P H G S S D L P P G I ................................................................................................................. Protein_Len: 37 Strand: + Start: 493 End: 603 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ M E N G G H S L L R S F T L T S N F L L G R M V L C V A R T F L P L S K E ................................................. Protein_Len: 38 Strand: - Start: 536 End: 649 ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... S Y S G T L F S P A R R Q G S T G G V R S L T L S L G I Q Q K D K R E D E M ... Protein_Len: 52 Strand: - Start: 296 End: 451 ....................................................................................................................................................................................................................................................................................................... R P R A D G C P E L S R G G P M P R A V R C A G T Y M I K C G M L R V A H L T V A A D P L S K G W R R M ......................................................................................................................................................................................................... Protein_Len: 37 Strand: - Start: 182 End: 292 ..................................................................................................................................................................................... H G A Y R V G L L N G F F S S F L L L D T L R T R Y E R G C T A L A D T M ........................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 30 Strand: - Start: 2 End: 91 . V S K T G F G R R G N H A V Y R P H C F S D N P K D P H V M ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 60 Strand: - Start: 1 End: 192 V S V E E D T I R W M D R T V F L I M R N I R I S W R R F F G K D N K K E K E D I S E K M C I L S N F V T P L D I D P M ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ caaccgacttggtaccgaaacctcttcgtccgttatgcgccacatatctcgggtgacaaaaagaatcattcggtttatccggatggaccaccgcctgaaaaagcccttatcgttctttttctctttctcgtcaatgctctctttcatacaaatcaatgagttaaataccgttggtaaatcaatgtccggcatatctcaccccaaggagattgccgaagaaagaggaaaaaagcagcagatctgtaagccgggttctgtactcacggccacacgtagccagagcgtctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngctgcatccgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccactctcgaaagagtgagcgacagaccgatctgctgcttatcttttctttcgtcttctatatc Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ caaccgacttggtaccgaaacctcttcgtccgttatgcgccacatatctcgggtgacaaaaagaatcattcggtttatccggatggaccaccgcctgaaaaagcccttatcgttctttttctctttctcgtcaatgctctctttcatacaaatcaatgagttaaataccgttggtaaatcaatgtccggcatatctcaccccaaggagattgccgaagaaagaggaaaaaagcagcagatctgtaagccgggttctgtactcacggccacacgtagccagagcgtctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngctgcatccgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccactctcgaaagagtgagcgacagaccgatctgctgcttatcttttctttcgtcttctatatc Predict TransTerm conf > 70================================================ Find igs database================================================ Query_seq: PG0958:PG0959|PG0958:PG0959:ribonuclease BN, putative:ATP-binding protein, Mrp/Nbp35 family:<-<-:1019461..1020112 652 caaccgacttggtaccgaaacctcttcgtccgttatgcgccacatatctcgggtgacaaaaagaatcattcggtttatccggatggaccaccgcctgaaaaagcccttatcgttctttttctctttctcgtcaatgctctctttcatacaaatcaatgagttaaataccgttggtaaatcaatgtccggcatatctcaccccaaggagattgccgaagaaagaggaaaaaagcagcagatctgtaagccgggttctgtactcacggccacacgtagccagagcgtctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngctgcatccgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccactctcgaaagagtgagcgacagaccgatctgctgcttatcttttctttcgtcttctatatc Intra-Species Hit: Count: 1 Min: 1 Max: 652 Len: 652 Subject: NC_002950_PG0958_PG0959|ribonuclease BN, putative:ATP-binding protein, Mrp/Nbp35 family|NEGATIVE:NEGATIVE|[1019461,1020112]|652 HSP 1 e-value: 1.0E-161 bit: 569.0 Len: 287 Query Start:1 Query End:287 Subject Strand: POSITIVE Subject Start: 1 Subject End: 287 caaccgacttggtaccgaaacctcttcgtccgttatgcgccacatatctcgggtgacaaaaagaatcattcggtttatccggatggaccaccgcctgaaaaagcccttatcgttctttttctctttctcgtcaatgctctctttcatacaaatcaatgagttaaataccgttggtaaatcaatgtccggcatatctcaccccaaggagattgccgaagaaagaggaaaaaagcagcagatctgtaagccgggttctgtactcacggccacacgtagccagagcgtct............................................................................................................................................................................................................................................................................................................................................................................. caaccgacttggtaccgaaacctcttcgtccgttatgcgccacatatctcgggtgacaaaaagaatcattcggtttatccggatggaccaccgcctgaaaaagcccttatcgttctttttctctttctcgtcaatgctctctttcatacaaatcaatgagttaaataccgttggtaaatcaatgtccggcatatctcaccccaaggagattgccgaagaaagaggaaaaaagcagcagatctgtaagccgggttctgtactcacggccacacgtagccagagcgtct............................................................................................................................................................................................................................................................................................................................................................................. HSP 2 e-value: 5.0E-28 bit: 127.0 Len: 64 Query Start:589 Query End:652 Subject Strand: POSITIVE Subject Start: 589 Subject End: 652 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ccactctcgaaagagtgagcgacagaccgatctgctgcttatcttttctttcgtcttctatatc ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ccactctcgaaagagtgagcgacagaccgatctgctgcttatcttttctttcgtcttctatatc Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ CAACCGACUUGGUACCGAAACCUCUUCGUCCGUUAUGCGCCACAUAUCUCGGGUGACAAAAAGAAUCAUUCGGUUUAUCCGGAUGGACCACCGCCUGAAAAAGCCCUUAUCGUUCUUUUUCUCUUUCUCGUCAAUGCUCUCUUUCAUACAAAUCAAUGAGUUAAAUACCGUUGGUAAAUCAAUGUCCGGCAUAUCUCACCCCAAGGAGAUUGCCGAAGAAAGAGGAAAAAAGCAGCAGAUCUGUAAGCCGGGUUCUGUACUCACGGCCACACGUAGCCAGAGCGUCUGUCAUUUAUCUUGGCCGUGCGUCACCGCAUGGCUCCAGCGAUCUACCCCCCGGCAUCGGGCGAGCCACCCUACAUGCGCCGGUAUACAUGAUCUUACAACCCAUCAGACGUACGGCAUGCAGCGUCACCGCUGCAUCCGGUAGGCUCUUACCCCACCUUCUCACCCUUACCCUCCACGUAGUCCGUACCGAAGCACAGACAACUCAUGGAAAAUGGCGGUCAUUCUCUUCUACGCUCCUUUACCCUCACGAGUAACUUCCUGUUAGGAAGGAUGGUGCUCUGCGUUGCCCGGACGUUCCUCCCACUCUCGAAAGAGUGAGCGACAGACCGAUCUGCUGCUUAUCUUUUCUUUCGUCUUCUAUAUC ..((((((..((((.......(((.((..(((.((((.....))))...)))..))...(((((..(((((((.....)))))))(((........(((((((..(.....)..)))))))........))).......))))).............))).....))))))))))...........(((((.(((((........))))))))))..(((((((((.(.((((((((((((.((...((((((..(((......((((.(.(((..((((((.(((((((.........(((((((((....)))))))))...(((..((((..((((....)))).((((((((........((((.(((...((((..........))))...))))))).(((((((....)))))))...))).)))))..............................))))..)))......).))))))..))).)))...)))).))))............................(((((.(((((.....))))).....))))).)))..))))))..(((.(((.....(((....))).))).)))..)).)))))))))))).).)))))))))............ (-201.19) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ GAUAUAGAAGACGAAAGAAAAGAUAAGCAGCAGAUCGGUCUGUCGCUCACUCUUUCGAGAGUGGGAGGAACGUCCGGGCAACGCAGAGCACCAUCCUUCCUAACAGGAAGUUACUCGUGAGGGUAAAGGAGCGUAGAAGAGAAUGACCGCCAUUUUCCAUGAGUUGUCUGUGCUUCGGUACGGACUACGUGGAGGGUAAGGGUGAGAAGGUGGGGUAAGAGCCUACCGGAUGCAGCGGUGACGCUGCAUGCCGUACGUCUGAUGGGUUGUAAGAUCAUGUAUACCGGCGCAUGUAGGGUGGCUCGCCCGAUGCCGGGGGGUAGAUCGCUGGAGCCAUGCGGUGACGCACGGCCAAGAUAAAUGACAGACGCUCUGGCUACGUGUGGCCGUGAGUACAGAACCCGGCUUACAGAUCUGCUGCUUUUUUCCUCUUUCUUCGGCAAUCUCCUUGGGGUGAGAUAUGCCGGACAUUGAUUUACCAACGGUAUUUAACUCAUUGAUUUGUAUGAAAGAGAGCAUUGACGAGAAAGAGAAAAAGAACGAUAAGGGCUUUUUCAGGCGGUGGUCCAUCCGGAUAAACCGAAUGAUUCUUUUUGUCACCCGAGAUAUGUGGCGCAUAACGGACGAAGAGGUUUCGGUACCAAGUCGGUUG .........((.((((((..(((.((((((((((((.(((((((.((((((((....)))))))).......(((((...((((...........(((((.....)))))((((((....))))))....))))......((...(((.((....((((((....((((((((....))))))))..)))))).((((.(((((((..((((((.......))))))..((((((((....))))))))(((.(((((.((.(.(((.(((........)))))).))).))))).)))..)))))))..)))).)).)))...)).)))))(((.((((....)))).)))..........)))))))((((((((((....)))))).)))).................)))))))))))).)))..)))))).))..(((((..(((((((((.(((.((((...((.((...((((...)))).....(((.((.((....)).)).)))..)).))..........(((((((..(.....)..))))))).))))...))))))))......((((((....((((((((((......(.((((.....)))).).)))))))))).))))))..))))..))))) (-247.70) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 1005 60 11 151 102 NC_002950:PG0958|5end_ribonuclease_BN,_putative_1019370..1019600_NEGATIVE 512 444 401 65 20 NC_002950:PG1992|5end_glucose-inhibited_division_protein_A_2081410..2081640_POSITIVE 473 350 301 69 6 NC_002950:PG2205|5end_2-dehydropantoate_2-reductase_2316121..2316351_POSITIVE 468 439 392 217 155 NC_002950:PG2155|5end_lipoprotein,_putative_2261862..2262092_NEGATIVE 466 280 234 174 122 NC_002950:PG1562|5end_dTDP-4-dehydrorhamnose_3,5-epimerase_1641582..1641812_NEGATIVE 462 353 311 210 167 NC_002950:PG0071|5end_UDP-3-O-acyl-GlcNAc_deacetylase/beta-hydroxyacyl-[acyl_carrier_protein]_dehydratase_FabZ_86119..86349_NEGATIVE 458 369 325 144 99 NC_002950:PG2087|5end_hypothetical_protein_2186990..2187220_POSITIVE 456 300 252 96 34 NC_002950:PG0094|5end_outer_membrane_efflux_protein,_putative_111193..111423_NEGATIVE 440 627 581 55 6 NC_002950:PG2109|5end_thiamine-phosphate_pyrophosphorylase_2219452..2219682_NEGATIVE 438 610 562 60 5 NC_002950:PG0506|5end_arginine-specific_cysteine_proteinase_545335..545565_POSITIVE 437 350 302 66 13 NC_002950:PG2174|5end_hypothetical_protein_2282578..2282808_NEGATIVE 437 350 301 221 174 NC_002950:PG2146|5end_hypothetical_protein_2253815..2254045_POSITIVE 437 440 391 160 108 NC_002950:PG0125|5end_hypothetical_protein_146786..147016_NEGATIVE 428 356 312 59 1 NC_002950:PG0362|5end_hypothetical_protein_395301..395531_POSITIVE 427 304 265 122 82 NC_002950:PG1172|5end_iron-sulfur_cluster_binding_protein,_putative_1251173..1251403_POSITIVE 425 346 303 49 1 NC_002950:PG1332|5end_NAD(P)_transhydrogenase,_beta_subunit_1412042..1412272_POSITIVE 422 346 301 212 162 NC_002950:PG2074|5end_hypothetical_protein_2174661..2174891_NEGATIVE 422 346 301 212 162 NC_002950:PG1670|5end_hypothetical_protein_1755853..1756083_NEGATIVE 422 346 301 212 162 NC_002950:PG1265|5end_hypothetical_protein_1345182..1345412_NEGATIVE 422 350 301 221 147 NC_002950:PG0987|5end_hypothetical_protein_1048002..1048232_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 492 366 322 56 1 NC_002950:PG1247|3end_3-dehydroquinate_synthase_1325585..1325735_POSITIVE 458 369 325 144 99 NC_002950:PG2086|3end_hypothetical_protein_2187070..2187220_POSITIVE 440 627 581 58 9 NC_002950:PG2110|3end_thiamine_biosynthesis_protein_ThiC_2219449..2219599_NEGATIVE 439 370 321 63 14 NC_002950:PG0605|3end_hypothetical_protein_661165..661315_NEGATIVE 427 304 265 44 4 NC_002950:PG1171|3end_oxidoreductase,_putative_1251175..1251325_POSITIVE 415 352 313 136 102 NC_002950:PG2150|3end_LysM_domain_protein_2257667..2257817_NEGATIVE 414 358 314 87 44 NC_002950:PG2126|3end_conserved_hypothetical_protein_TIGR00044_2232438..2232588_NEGATIVE 411 348 305 149 92 NC_002950:PG0361|3end_hypothetical_protein_395481..395631_POSITIVE 408 590 543 59 6 NC_002950:PG2068|3end_glycerol-3-phosphate_cytidylyltransferase_2164872..2165022_POSITIVE 401 350 314 55 8 NC_002950:PG2204|3end_hypothetical_protein_2316187..2316337_POSITIVE 399 346 301 138 88 NC_002950:PG1794|3end_DNA_polymerase_type_I_1888838..1888988_POSITIVE 399 434 391 75 23 NC_002950:PG1613|3end_glyoxalase_family_protein_1693164..1693314_NEGATIVE 399 348 301 146 83 NC_002950:PG0555|3end_DNA-binding_protein,_histone-like_family_611716..611866_NEGATIVE 396 439 392 126 73 NC_002950:PG1972|3end_hemagglutinin_protein_HagB_2061203..2061353_POSITIVE 396 356 314 148 100 NC_002950:PG1487|3end_hypothetical_protein_1561799..1561949_POSITIVE 394 448 401 145 73 NC_002950:PG1975|3end_hemagglutinin_protein_HagC_2064350..2064500_POSITIVE 393 369 325 58 10 NC_002950:PG2144|3end_hypothetical_protein_2253290..2253440_POSITIVE 393 280 231 71 13 NC_002950:PG1417|3end_fumarate_hydratase_class_I,_anaerobic_1503021..1503171_POSITIVE 392 358 312 53 8 NC_002950:PG0507|3end_hypothetical_protein_548190..548340_POSITIVE 392 600 558 64 13 NC_002950:PG0224|3end_hypothetical_protein_257614..257764_NEGATIVE