Origin IGS: tgtttgcctaatctatcgattcactgttttgcgatgtgggttcaggcaggacgtataccttgtgcgagcagagtccgcgtgtcgccaatttaccttcttgtacccagtggttcagttcccttgtagcactgtgtttgagcaggccggatagtgtgctgtactcggctatccgaatatatcctctgtggcggatgtgccctgccgccaagcgatagcgttcttcctcgtctgctttggggcaggattggccgaagctcggaccgcgcttcacactcatgctgcgcatccgtcgtttggcttgcggtgtggaacggaaattgatatccacggcttggacggaaccggatcggatttcctttttgtctcttactccgcgcgattttactttggccgataatgtgccgatattgcccagccggaagctatagcccgaagccagatactcgaatatcaactcctccatggctatcatcagtcccgtgatgtcgccggagctgaaggacgacctgtccgaaatgtcccgacaaaggtcctcggtggtgtactgccgttggatgatagcttgagcaaataaccgtccttctgcctcttcggattcattttggtcgggacgtggcggcatcttgcgaaaattatacaggatcgacataagcgaaatagggtagggttgttttgttttcgatacggacttgtcagcatctgtttgtcttcggttccccatagcggtgataattttctacgctgatataagggcgaaacttaagagaaatagagcttcaagtactaatgattaagttgcaaatatagaactttttgtcaaaatttcaattgaaattcttgagaatctcataggaagttttatagaatcacaaatgagtttcttatagtactcctttgttattctaataaaaagtagccatgtaatactatattgttatgtgtaataaagattgattcgaattgcttttatgcttaataacaagacgggtagctgcaagtattcaaagaga .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 tctctttgaatacttgcagctacccgtcttgttattaagcataaaagcaattcgaatcaatctttattacacataacaatatagtattacatggctactttttattagaataacaaaggagtactataagaaactcatttgtgattctataaaacttcctatgagattctcaagaatttcaattgaaattttgacaaaaagttctatatttgcaacttaatcattagtacttgaagctctatttctcttaagtttcgcccttatatcagcgtagaaaattatcaccgctatggggaaccgaagacaaacagatgctgacaagtccgtatcgaaaacaaaacaaccctaccctatttcgcttatgtcgatcctgtataattttcgcaagatgccgccacgtcccgaccaaaatgaatccgaagaggcagaaggacggttatttgctcaagctatcatccaacggcagtacaccaccgaggacctttgtcgggacatttcggacaggtcgtccttcagctccggcgacatcacgggactgatgatagccatggaggagttgatattcgagtatctggcttcgggctatagcttccggctgggcaatatcggcacattatcggccaaagtaaaatcgcgcggagtaagagacaaaaaggaaatccgatccggttccgtccaagccgtggatatcaatttccgttccacaccgcaagccaaacgacggatgcgcagcatgagtgtgaagcgcggtccgagcttcggccaatcctgccccaaagcagacgaggaagaacgctatcgcttggcggcagggcacatccgccacagaggatatattcggatagccgagtacagcacactatccggcctgctcaaacacagtgctacaagggaactgaaccactgggtacaagaaggtaaattggcgacacgcggactctgctcgcacaaggtatacgtcctgcctgaacccacatcgcaaaacagtgaatcgatagattaggcaaaca Mask Tandem Repeat Region ================================================ tgtttgcctaatctatcgattcactgttttgcgatgtgggttcaggcaggacgtataccttgtgcgagcagagtccgcgtgtcgccaatttaccttcttgtacccagtggttcagttcccttgtagcactgtgtttgagcaggccggatagtgtgctgtactcggctatccgaatatatcctctgtggcggatgtgccctgccgccaagcgatagcgttcttcctcgtctgctttggggcaggattggccgaagctcggaccgcgcttcacactcatgctgcgcatccgtcgtttggcttgcggtgtggaacggaaattgatatccacggcttggacggaaccggatcggatttcctttttgtctcttactccgcgcgattttactttggccgataatgtgccgatattgcccagccggaagctatagcccgaagccagatactcgaatatcaactcctccatggctatcatcagtcccgtgatgtcgccggagctgaaggacgacctgtccgaaatgtcccgacaaaggtcctcggtggtgtactgccgttggatgatagcttgagcaaataaccgtccttctgcctcttcggattcattttggtcgggacgtggcggcatcttgcgaaaattatacaggatcgacataagcgaaatagggtagggttgttttgttttcgatacggacttgtcagcatctgtttgtcttcggttccccatagcggtgataattttctacgctgatataagggcgaaacttaagagaaatagagcttcaagtactaatgattaagttgcaaatatagaactttttgtcaaaatttcaattgaaattcttgagaatctcataggaagttttatagaatcacaaatgagtttcttatagtactcctttgttattctaataaaaagtagccatgtaatactatattgttatgtgtaataaagattgattcgaattgcttttatgcttaataacaagacgggtagctgcaagtattcaaagaga Find is-nt database================================================ Query_seq: PG0930:PG0932|PG0930:PG0932:hypothetical protein:DNA polymerase III, delta prime subunit, putative:<-->:987633..988642 1010 tgtttgcctaatctatcgattcactgttttgcgatgtgggttcaggcaggacgtataccttgtgcgagcagagtccgcgtgtcgccaatttaccttcttgtacccagtggttcagttcccttgtagcactgtgtttgagcaggccggatagtgtgctgtactcggctatccgaatatatcctctgtggcggatgtgccctgccgccaagcgatagcgttcttcctcgtctgctttggggcaggattggccgaagctcggaccgcgcttcacactcatgctgcgcatccgtcgtttggcttgcggtgtggaacggaaattgatatccacggcttggacggaaccggatcggatttcctttttgtctcttactccgcgcgattttactttggccgataatgtgccgatattgcccagccggaagctatagcccgaagccagatactcgaatatcaactcctccatggctatcatcagtcccgtgatgtcgccggagctgaaggacgacctgtccgaaatgtcccgacaaaggtcctcggtggtgtactgccgttggatgatagcttgagcaaataaccgtccttctgcctcttcggattcattttggtcgggacgtggcggcatcttgcgaaaattatacaggatcgacataagcgaaatagggtagggttgttttgttttcgatacggacttgtcagcatctgtttgtcttcggttccccatagcggtgataattttctacgctgatataagggcgaaacttaagagaaatagagcttcaagtactaatgattaagttgcaaatatagaactttttgtcaaaatttcaattgaaattcttgagaatctcataggaagttttatagaatcacaaatgagtttcttatagtactcctttgttattctaataaaaagtagccatgtaatactatattgttatgtgtaataaagattgattcgaattgcttttatgcttaataacaagacgggtagctgcaagtattcaaagaga Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PG0930:PG0932|PG0930:PG0932:hypothetical protein:DNA polymerase III, delta prime subunit, putative:<-->:987633..988642 1010 tgtttgcctaatctatcgattcactgttttgcgatgtgggttcaggcaggacgtataccttgtgcgagcagagtccgcgtgtcgccaatttaccttcttgtacccagtggttcagttcccttgtagcactgtgtttgagcaggccggatagtgtgctgtactcggctatccgaatatatcctctgtggcggatgtgccctgccgccaagcgatagcgttcttcctcgtctgctttggggcaggattggccgaagctcggaccgcgcttcacactcatgctgcgcatccgtcgtttggcttgcggtgtggaacggaaattgatatccacggcttggacggaaccggatcggatttcctttttgtctcttactccgcgcgattttactttggccgataatgtgccgatattgcccagccggaagctatagcccgaagccagatactcgaatatcaactcctccatggctatcatcagtcccgtgatgtcgccggagctgaaggacgacctgtccgaaatgtcccgacaaaggtcctcggtggtgtactgccgttggatgatagcttgagcaaataaccgtccttctgcctcttcggattcattttggtcgggacgtggcggcatcttgcgaaaattatacaggatcgacataagcgaaatagggtagggttgttttgttttcgatacggacttgtcagcatctgtttgtcttcggttccccatagcggtgataattttctacgctgatataagggcgaaacttaagagaaatagagcttcaagtactaatgattaagttgcaaatatagaactttttgtcaaaatttcaattgaaattcttgagaatctcataggaagttttatagaatcacaaatgagtttcttatagtactcctttgttattctaataaaaagtagccatgtaatactatattgttatgtgtaataaagattgattcgaattgcttttatgcttaataacaagacgggtagctgcaagtattcaaagaga Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PG0930:PG0932|PG0930:PG0932:hypothetical protein:DNA polymerase III, delta prime subunit, putative:<-->:987633..988642 1010 tgtttgcctaatctatcgattcactgttttgcgatgtgggttcaggcaggacgtataccttgtgcgagcagagtccgcgtgtcgccaatttaccttcttgtacccagtggttcagttcccttgtagcactgtgtttgagcaggccggatagtgtgctgtactcggctatccgaatatatcctctgtggcggatgtgccctgccgccaagcgatagcgttcttcctcgtctgctttggggcaggattggccgaagctcggaccgcgcttcacactcatgctgcgcatccgtcgtttggcttgcggtgtggaacggaaattgatatccacggcttggacggaaccggatcggatttcctttttgtctcttactccgcgcgattttactttggccgataatgtgccgatattgcccagccggaagctatagcccgaagccagatactcgaatatcaactcctccatggctatcatcagtcccgtgatgtcgccggagctgaaggacgacctgtccgaaatgtcccgacaaaggtcctcggtggtgtactgccgttggatgatagcttgagcaaataaccgtccttctgcctcttcggattcattttggtcgggacgtggcggcatcttgcgaaaattatacaggatcgacataagcgaaatagggtagggttgttttgttttcgatacggacttgtcagcatctgtttgtcttcggttccccatagcggtgataattttctacgctgatataagggcgaaacttaagagaaatagagcttcaagtactaatgattaagttgcaaatatagaactttttgtcaaaatttcaattgaaattcttgagaatctcataggaagttttatagaatcacaaatgagtttcttatagtactcctttgttattctaataaaaagtagccatgtaatactatattgttatgtgtaataaagattgattcgaattgcttttatgcttaataacaagacgggtagctgcaagtattcaaagaga Intra-Species Hit: Count: 0 Inter-species Hit: Count: 9 Min: 29 Max: 649 Len: 621 Subject: UniRef90_Q8A060 Cluster: Hypothetical protein; n=1; Bacteroides thetaiotaomicron|Rep: Hypothetical protein - Bacteroides thetaiotaomicron HSP 1 e-value: 8.0E-28 bit: 127.0 Len: 606 Query Start:44 Query End:649 Subject Strand: null Subject Start: 1 Subject End: 197 ........................................... M S I L Y N F R K M P P R P D Q N E S E E A E G R L F A Q A I I Q R Q Y T T E D L C R D I S D R S S F S S G D I T G L M I A M E E L I F E Y L A S G Y S F R L G N I G T L S A K V K S R G V R D K K E I R S G S V Q A V D I N F R S T P Q A K R R M R S M S V K R G P S F G Q S C P K A D E E E R Y R L A A G H I R H R G Y I R I A E Y S T L S G L L K H S A T R E L N H W V Q E G K L A T R G L C S H K V Y V L P ......................................................................................................................................................................................................................................................................................................................................................................... ........................................... M A A D Y D F R R K P N E K G D G E V Q P L Y P R I V S K G T I D - - - - S K R L F R E I A E A S S F T E G D L A G I M V A F Q E K V S Y Y L S E G Y H V K L G E I G Y F S S S L K A R P V M D K K E I R S V S I S F D N V N F R A T P W F R R R S S G T V T R A K F G F Q E S S N L P E E T R R S R L E A - F L A K N H F I T R R E Y S Q I T G L L K G K A L R E L N L L V E N G V L N T R G Y G N R V V Y L K P ......................................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q64NA6 Cluster: Hypothetical protein; n=1; Bacteroides fragilis|Rep: Hypothetical protein - Bacteroides fragilis HSP 1 e-value: 4.0E-23 bit: 111.0 Len: 621 Query Start:29 Query End:649 Subject Strand: null Subject Start: 1 Subject End: 204 ............................ M S I L Y N F R K M P P R P D Q N E S E E A E G R L F A Q A I I Q R Q Y T T E D L C R D I S D R S S F S S G D I T G L M I A M E E L I F E Y L A S G Y S F R L G N I G T L S A K V K S - R G V R D K K E I R S G S V Q A V D I N F R S T P Q A K R R M R S M S V K R G P S F G Q S C P K A D E E E R Y R L A A G H I R H R G Y I R I A E Y S T L S G L L K H S A T R E L N H W V Q E G K L A T R G L C S H K V Y V L P E P T S Q ......................................................................................................................................................................................................................................................................................................................................................................... ............................ M A A R Y D F R E V P S K K G N G E - - - - E P K L Y P H I V S G G T I R T R T I L E E I S E A S T F T V G D L E G V L C A L T E K I S K Y L V D G Y H V E L G K I G Y F S A S L K A T H P V K D K K E I R A Q S I Y F D N V N F R A S M W F R R H T S G Y V E R A G K Y G S R S S S Q L S E E E K L F R L E R Y L N E N A F I T R S D Y T R L T G R L K N K A L E D L N H F V S Q G V I E R R G R G S L L V F I K K T P S K E ......................................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q8A7V0 Cluster: Hypothetical protein; n=1; Bacteroides thetaiotaomicron|Rep: Hypothetical protein - Bacteroides thetaiotaomicron HSP 1 e-value: 1.0E-12 bit: 77.0 Len: 600 Query Start:50 Query End:649 Subject Strand: null Subject Start: 1 Subject End: 200 ................................................. M S I L Y N F R K M P P R P D Q N E S E E A E G R L F A Q A I I Q R Q Y T T E D L C R D I S D R S S F S S G D I T G L M I A M E E L I F E Y L A S G Y S F R L G N I G T L S A K V K - S R G V R D K K E I R S G S V Q A V D I N F R S T P Q A K R R M - R S M S V K R G P S F G Q S C - - P K A D E E E R Y R L A A G H I R H R G Y I R I A E Y S T L S G L L K H S A T R E L N H W V Q E G K L A T R G L C S H K V Y V ......................................................................................................................................................................................................................................................................................................................................................................... ................................................. M S A F Y D L Y E T P D P N D T G E K Q P - - - - L H A R I V P S G T Y S K K D F I E R V S R H Q P F P H N I I E G V L G A V V D E L A E A L A D G Y I V E L G E L G H F S I S L K C T H K V M T K K E I R A E S I R F D N V H L R T S K E F K K K I K R E I E L E R V E N S N E K T H N A K I S I E D R L Q M L Q E F L K K N G G I T R I E Y S R L T G L P R L K A I D D L N T F I K E G T L R K R G A G R T V F Y V ......................................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q8A9M0 Cluster: Hypothetical protein; n=1; Bacteroides thetaiotaomicron|Rep: Hypothetical protein - Bacteroides thetaiotaomicron HSP 1 e-value: 6.0E-12 bit: 74.3 Len: 597 Query Start:53 Query End:649 Subject Strand: null Subject Start: 1 Subject End: 193 .................................................... M S I L Y N F R K M P P R P D Q N E S E E A E G R L F A Q A I I Q R Q Y T T E D L C R D I S D R S S F S S G D I T G L M I A M E E L I F E Y L A S G Y S F R L G N I G T L S A K V K S R G V R D K K E I R S G S V Q A V D I N F R S T P Q A K R R M R S M S V K R G P S F G Q S C P K A D E E E R Y R L A A G H I R H R G Y I R I A E Y S T L S G L L K H S A T R E L N H W V Q E G K L A T R G L C S H K V Y ......................................................................................................................................................................................................................................................................................................................................................................... .................................................... M N A L Y D F F L T P Q P K D S N K T - - - - - R Y H A R L V V R D T I T L E D I A E T I E S R S S L R Q S D V I G S F I E F A N V F K Q E L S N G N S I H I P G V G S F R I K A E S P E V R S P K E I R A E N I H C S G I V F T P E K D L L R E L K A T T F E K V S E T R R S Q E L S D I E I D G R L A E - F F K D N S C I T T Q Q L C S L C G L R K A T A L R R L Q K R V D E G K L T H P G Y I R S P F Y ......................................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q89YX9 Cluster: Hypothetical protein; n=1; Bacteroides thetaiotaomicron|Rep: Hypothetical protein - Bacteroides thetaiotaomicron HSP 1 e-value: 8.0E-10 bit: 67.4 Len: 486 Query Start:50 Query End:535 Subject Strand: null Subject Start: 33 Subject End: 205 ................................................. E D L C R D I S D R S S F S S G D I T G L M I A M E E L I F E Y L A S G Y S F R L G N I G T L S A K V K S R G V R D K K E I R S G - - - - - - - S V Q A V D I N F R S T P Q A K R R M R S - M S V K R G P S F G Q - S C P K A D E E E R Y R L A A G H I R H R G Y I R I A E Y S T L S G L L K H S A T R E L N H W - - V Q E G K L A T R G L C S H K V Y V ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ................................................. K E L A Q R V G D V S G F S A G D I E G V L L Q T A I E M A H L M A E G R S V K I D G I G T F T P S L A L C R D K E R E E A E E G A K H R N A Q S I C V G G V N F R A D R T M I R N I N E R C R L E R A P W K P Q R S S K K F T P E Q R L T L A L K F L D E H A F L T V R N Y Q R L T G L L Q T A A T K E L K Q W A D L P E S G I D I A G R G S H R V Y V ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q8A5L4 Cluster: Hypothetical protein; n=1; Bacteroides thetaiotaomicron|Rep: Hypothetical protein - Bacteroides thetaiotaomicron HSP 1 e-value: 2.0E-9 bit: 66.2 Len: 600 Query Start:50 Query End:649 Subject Strand: null Subject Start: 1 Subject End: 198 ................................................. M S I L Y N F R K M P P R P D Q N E S E E A E G R L F A Q A I I Q R Q Y T T E D L C R D I S D R S S F S S G D I T G L M I A M E E L I F E Y L A S G Y S F R L G N I G T L S A K V K - S R G V R D K K E I R S G S V Q A V D I N F R S T P Q A K R R M R S - M S V K R G P S F G Q S C P K A D E E E R Y R L A A G H I R H R G Y I R I A E Y S T L S G L L K H S A T R E L N H W V Q E G K L A T R G L C S H K V Y V ......................................................................................................................................................................................................................................................................................................................................................................... ................................................. M S I Y Y D L Y E N P K Q E D A E E Q K - - - - L L H A R V V P S G T Y T T K E F V E R V S M M H H I P H A Q L V G A V E A I T D E L Q T L L S R G Y I V E F G D L G H F S L T L S L E K E I I D R K E V R S P S I R L K N I K L K V K Q T Y K R E L N S K M D L E R I S S P T R S N A K I S E D E C L K K L Q D F L E K H P C I N R A D Y C A I T G M S R L Q A L H Q L N L F I E K G I I Q K Y G N G K T V V Y I ......................................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_A3J782 Cluster: Hypothetical protein; n=1; Flavobacteria bacterium BAL38|Rep: Hypothetical protein - Flavobacteria bacterium BAL38 HSP 1 e-value: 2.0E-7 bit: 59.3 Len: 363 Query Start:263 Query End:625 Subject Strand: null Subject Start: 6 Subject End: 125 ...................................................................................................................................................................................................................................................................... K M P P R P D Q N E S E E A E G R L F A Q A I I Q R Q Y T T E D L C R D I S D R S S F S S G D I T G L M I A M E E L I F E Y L A S G Y S F R L G N I G T L S A K V K S R G V R D K K E I R S G S V Q A V D I N F R S T P Q A K R R M R S M S V K R ................................................................................................................................................................................................................................................................................................................................................................................................. ...................................................................................................................................................................................................................................................................... K M I P K K N - N L T S P P E V K Y Y P C A V S Q G E V N L D D L A R I V A S R T T M S R P D C F G V I M A L S D V I G E S L A N G N I V R V D N L G T F Q L N L T G T P A D S D A V I G K S N I K E A K I N Y R P S K E L K N R M K K I T Y K R ................................................................................................................................................................................................................................................................................................................................................................................................. Subject: UniRef90_Q8A4R3 Cluster: Hypothetical protein; n=1; Bacteroides thetaiotaomicron|Rep: Hypothetical protein - Bacteroides thetaiotaomicron HSP 1 e-value: 8.0E-7 bit: 57.4 Len: 597 Query Start:53 Query End:649 Subject Strand: null Subject Start: 1 Subject End: 197 .................................................... M S I L Y N F R K M P P R P D Q N E S E E A E G R L F A Q A I I Q R Q Y T T E D L C R D I S D R S S F S S G D I T G L M I A M E E L I F E Y L A S G Y S F R L G N I G T L S A K V K S R G V R D K K E I R S G S V Q A V D I N F R S T P Q A K R R M - - - - - - - R S M S V K R G P S F G Q S C P K A D E E E R Y R L A A G H I R H R G Y I R I A E Y S T L S G L L K H S A T R E L N H W V Q E G K L A T R G L C S H K V Y ......................................................................................................................................................................................................................................................................................................................................................................... .................................................... M S A Q Y D L Y E T P D I K Q T G E K Q P L H P R I V P K G T I G Q - - - - D E F L D R V H K F T G I S R S L L A G A M Q S F Q N E L K D L L A N G W I V E L G E I G Y F S V S L Q G P P V M H K K D V R A Q S I K L K N I N Y L P T K Q F K R E V G Y D M R L E R T E S L T R P K G N G R S - - - - - E A E C L A L I T A H L E K Y P C M T R T D Y C H M T G H D K K R A L K E L N A F I E K E I L M R Y G A G K Q V V Y ......................................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q89ZZ0 Cluster: Hypothetical protein; n=1; Bacteroides thetaiotaomicron|Rep: Hypothetical protein - Bacteroides thetaiotaomicron HSP 1 e-value: 2.0E-6 bit: 55.8 Len: 600 Query Start:50 Query End:649 Subject Strand: null Subject Start: 1 Subject End: 196 ................................................. M S I L Y N F R K M P P R P D Q N E S E E A E G R L F A Q A I I Q R Q Y T T E D L C R D I S D R S S F S S G D I T G L M I A M E E L I F E Y L A S G Y S F R L G N I G - - - - T L S A K V K S R G V R D K K E I R S G S V Q A V D I N F R S T P Q A K R R M R S M S V K R - G P S F G Q S C P K A D E E E R Y R L A A G H I R H R G Y I R I A E Y S T L S G L L K H S A T R E L N H W V Q E G K L A T R G L C S H K V Y V ......................................................................................................................................................................................................................................................................................................................................................................... ................................................. M A I L F D W Y E N P V S P D Q P K K K R F H P R I A Y N G - - - - Q V D T D E M R S K I Q S R C T L N E V D V T A V L D A L S Q V M G E E L G E G R Q V H L D G I G Y F Y P T L T A T E E I A A D T P R R N M K - - - I K L K A I R F R S D Q K L K N S I G L I K V K Q L K K N F H S S - - K L S E V E I D M L L K E Y F S T H Q M M Q R R D F Q S L C G M V R S T A M I H I R R I C Q E G K L Q N L G L R N Q P I Y V ......................................................................................................................................................................................................................................................................................................................................................................... tgtttgcctaatctatcgattcactgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagcgaaatagggtagggttgttttgttttcgatacggacttgtcagcatctgtttgtcttcggttccccatagcggtgataattttctacgctgatataagggcgaaacttaagagaaatagagcttcaagtactaatgattaagttgcaaatatagaactttttgtcaaaatttcaattgaaattcttgagaatctcataggaagttttatagaatcacaaatgagtttcttatagtactcctttgttattctaataaaaagtagccatgtaatactatattgttatgtgtaataaagattgattcgaattgcttttatgcttaataacaagacgggtagctgcaagtattcaaagaga Predict ORF larger than 30AA ================================================ Protein_Len: 40 Strand: + Start: 4 End: 123 ... M P N L S I H C F A M W V Q A G R I P C A S R V R V S P I Y L L V P S G S V P L ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 46 Strand: + Start: 11 End: 148 .......... M Y R F T V L R C G F R Q D V Y L V R A E S A C R Q F T F L Y P V V Q F P C S T V F E Q A G .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 60 Strand: + Start: 15 End: 212 .............. M D S L F C D V G S G R T Y T L C E Q S P R V A N L P S C T Q W F S S L V A L C L S R P D S V L Y S A I R I Y P L W R M .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 57 Strand: + Start: 148 End: 318 ................................................................................................................................................... M V C C T R L S E Y I L C G G C A L P P S D S V L P R L L W G R I G R S S D R A S H S C C A S V V W L A V W N G N .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 176 End: 394 ............................................................................................................................................................................... M S S V A D V P C R Q A I A F F L V C F G A G L A E A R T A L H T H A A H P S F G L R C G T E I D I H G L D G T G S D F ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 60 Strand: + Start: 234 End: 425 ......................................................................................................................................................................................................................................... M G Q D W P K L G P R F T L M L R I R R L A C G V E R K L I S T A W T E P D R I S F L S L T P R D F T L A D N V P I L P ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 45 Strand: + Start: 346 End: 480 ......................................................................................................................................................................................................................................................................................................................................................... M G F P F C L L L R A I L L W P I M C R Y C P A G S Y S P K P D T R I S T P P W L S S V P .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 38 Strand: + Start: 450 End: 563 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M N S S M A I I S P V M S P E L K D D L S E M S R Q R S S V V Y C R W M I A ............................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 55 Strand: + Start: 407 End: 571 ...................................................................................................................................................................................................................................................................................................................................................................................................................... M A Q P E A I A R S Q I L E Y Q L L H G Y H Q S R D V A G A E G R P V R N V P T K V L G G V L P L D D S L S K ....................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 48 Strand: + Start: 599 End: 742 ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M L V G T W R H L A K I I Q D R H K R N R V G L F C F R Y G L V S I C L S S V P H S G D N F L R ............................................................................................................................................................................................................................................................................ Protein_Len: 34 Strand: + Start: 690 End: 791 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M S A S V C L R F P I A V I I F Y A D I R A K L K R N R A S S T N D ........................................................................................................................................................................................................................... Protein_Len: 44 Strand: - Start: 794 End: 925 ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... T A F I S S K T L I E I S I R S F R M P L K I S D C I L K K Y Y E K T I R I F L L W T M ..................................................................................... Protein_Len: 60 Strand: - Start: 475 End: 699 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... G V F T R P P T S G N S S L K L L Y G D K Q R K P N M K T P V H R C R A F I I C S R C L R F L T P N N Q K R Y P S T L M ....................................................................................................................................................................................................................................................................................................................... Protein_Len: 57 Strand: - Start: 426 End: 596 ......................................................................................................................................................................................................................................................................................................................................................................................................................................... L G F G S V R I D V G G H S D D T G H H R R L Q L V V Q G F H G S L P G R H H V A T P H Y S S C I V T R R G R R M .............................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 60 Strand: - Start: 93 End: 398 ............................................................................................ R G R R S Q P L I P R L E S R A E C E H Q A D T T Q S A T H F P F Q Y G R S P R F R I P N G K Q R K S R A I K S Q G I M .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 11 End: 733 .......... I I A Q A F L R G E A E E S E N Q D P R P P M K R F N Y L I S M L S I P Y P Q K T K S V S K D A D T Q R R N G M A T I M ..................................................................................................................................................................................................................................................................................... tgtttgcctaatctatcgattcactgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagcgaaatagggtagggttgttttgttttcgatacggacttgtcagcatctgtttgtcttcggttccccatagcggtgataattttctacgctgatataagggcgaaacttaagagaaatagagcttcaagtactaatgattaagttgcaaatatagaactttttgtcaaaatttcaattgaaattcttgagaatctcataggaagttttatagaatcacaaatgagtttcttatagtactcctttgttattctaataaaaagtagccatgtaatactatattgttatgtgtaataaagattgattcgaattgcttttatgcttaataacaagacgggtagctgcaagtattcaaagaga Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ tgtttgcctaatctatcgattcactgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagcgaaatagggtagggttgttttgttttcgatacggacttgtcagcatctgtttgtcttcggttccccatagcggtgataattttctacgctgatataagggcgaaacttaagagaaatagagcttcaagtactaatgattaagttgcaaatatagaactttttgtcaaaatttcaattgaaattcttgagaatctcataggaagttttatagaatcacaaatgagtttcttatagtactcctttgttattctaataaaaagtagccatgtaatactatattgttatgtgtaataaagattgattcgaattgcttttatgcttaataacaagacgggtagctgcaagtattcaaagaga Predict TransTerm conf > 70================================================ Find igs database================================================ Query_seq: PG0930:PG0932|PG0930:PG0932:hypothetical protein:DNA polymerase III, delta prime subunit, putative:<-->:987633..988642 1010 tgtttgcctaatctatcgattcactgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagcgaaatagggtagggttgttttgttttcgatacggacttgtcagcatctgtttgtcttcggttccccatagcggtgataattttctacgctgatataagggcgaaacttaagagaaatagagcttcaagtactaatgattaagttgcaaatatagaactttttgtcaaaatttcaattgaaattcttgagaatctcataggaagttttatagaatcacaaatgagtttcttatagtactcctttgttattctaataaaaagtagccatgtaatactatattgttatgtgtaataaagattgattcgaattgcttttatgcttaataacaagacgggtagctgcaagtattcaaagaga Intra-Species Hit: Count: 1 Min: 1 Max: 1010 Len: 1010 Subject: NC_002950_PG0930_PG0932|hypothetical protein:DNA polymerase III, delta prime subunit, putative|NEGATIVE:POSITIVE|[987633,988642]|1010 HSP 1 e-value: 0.0 bit: 716.0 Len: 361 Query Start:650 Query End:1010 Subject Strand: POSITIVE Subject Start: 650 Subject End: 1010 .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................aagcgaaatagggtagggttgttttgttttcgatacggacttgtcagcatctgtttgtcttcggttccccatagcggtgataattttctacgctgatataagggcgaaacttaagagaaatagagcttcaagtactaatgattaagttgcaaatatagaactttttgtcaaaatttcaattgaaattcttgagaatctcataggaagttttatagaatcacaaatgagtttcttatagtactcctttgttattctaataaaaagtagccatgtaatactatattgttatgtgtaataaagattgattcgaattgcttttatgcttaataacaagacgggtagctgcaagtattcaaagaga .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................aagcgaaatagggtagggttgttttgttttcgatacggacttgtcagcatctgtttgtcttcggttccccatagcggtgataattttctacgctgatataagggcgaaacttaagagaaatagagcttcaagtactaatgattaagttgcaaatatagaactttttgtcaaaatttcaattgaaattcttgagaatctcataggaagttttatagaatcacaaatgagtttcttatagtactcctttgttattctaataaaaagtagccatgtaatactatattgttatgtgtaataaagattgattcgaattgcttttatgcttaataacaagacgggtagctgcaagtattcaaagaga HSP 2 e-value: 3.0E-6 bit: 56.0 Len: 28 Query Start:1 Query End:28 Subject Strand: POSITIVE Subject Start: 1 Subject End: 28 tgtttgcctaatctatcgattcactgtt...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... tgtttgcctaatctatcgattcactgtt...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UGUUUGCCUAAUCUAUCGAUUCACUGUUUUGCGAUGUGGGUUCAGGCAGGACGUAUACCUUGUGCGAGCAGAGUCCGCGUGUCGCCAAUUUACCUUCUUGUACCCAGUGGUUCAGUUCCCUUGUAGCACUGUGUUUGAGCAGGCCGGAUAGUGUGCUGUACUCGGCUAUCCGAAUAUAUCCUCUGUGGCGGAUGUGCCCUGCCGCCAAGCGAUAGCGUUCUUCCUCGUCUGCUUUGGGGCAGGAUUGGCCGAAGCUCGGACCGCGCUUCACACUCAUGCUGCGCAUCCGUCGUUUGGCUUGCGGUGUGGAACGGAAAUUGAUAUCCACGGCUUGGACGGAACCGGAUCGGAUUUCCUUUUUGUCUCUUACUCCGCGCGAUUUUACUUUGGCCGAUAAUGUGCCGAUAUUGCCCAGCCGGAAGCUAUAGCCCGAAGCCAGAUACUCGAAUAUCAACUCCUCCAUGGCUAUCAUCAGUCCCGUGAUGUCGCCGGAGCUGAAGGACGACCUGUCCGAAAUGUCCCGACAAAGGUCCUCGGUGGUGUACUGCCGUUGGAUGAUAGCUUGAGCAAAUAACCGUCCUUCUGCCUCUUCGGAUUCAUUUUGGUCGGGACGUGGCGGCAUCUUGCGAAAAUUAUACAGGAUCGACAUAAGCGAAAUAGGGUAGGGUUGUUUUGUUUUCGAUACGGACUUGUCAGCAUCUGUUUGUCUUCGGUUCCCCAUAGCGGUGAUAAUUUUCUACGCUGAUAUAAGGGCGAAACUUAAGAGAAAUAGAGCUUCAAGUACUAAUGAUUAAGUUGCAAAUAUAGAACUUUUUGUCAAAAUUUCAAUUGAAAUUCUUGAGAAUCUCAUAGGAAGUUUUAUAGAAUCACAAAUGAGUUUCUUAUAGUACUCCUUUGUUAUUCUAAUAAAAAGUAGCCAUGUAAUACUAUAUUGUUAUGUGUAAUAAAGAUUGAUUCGAAUUGCUUUUAUGCUUAAUAACAAGACGGGUAGCUGCAAGUAUUCAAAGAGA (((((((((..(((.((((.(((((((((((((((.(((((..(((.(((((((...(((((.(((.((((.(..(((((.((((((.....(((.((((.((.(((((.(.(((.....))).).))))).)).)))).))).((((((....((((....)))))))))).............))))))))))).)))))))))))).)...))))))).)))........((((.(((..(((((((((((..((((..((((..((......))..)))).)))).......((..((((.((((((((((((..((.((((..(..((((......))))..))))).)).))))))).)).))).)))))).......)))))))))))..))).))))....)))))..(((((((.(((((((...(((..((..(((....(((.((((.....(((...(((((......)))))..))))))).)))....(((((((((((..((((((((((....((((.(((..(....)..)))..))))....((....))...............((..((....))..)).....))))))))))..)))..((....)).......))))).))).......))).))..))).)))))))...)))))))....(((((((..(((.(((((((.((((.((((((((.((.(((((.((......)))))))...)).))).).)))).)))).)))))))))).))))).)).........)))))))).)))).(((((((((.((((((((...(((.((((....)))).)))...)))))))).((((((.(((((.((((..........)))).))))).)))))))))))))))...(((((((((......)))))))))..........))).))))...((......)).........))).))))))..))).............. (-312.30) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UCUCUUUGAAUACUUGCAGCUACCCGUCUUGUUAUUAAGCAUAAAAGCAAUUCGAAUCAAUCUUUAUUACACAUAACAAUAUAGUAUUACAUGGCUACUUUUUAUUAGAAUAACAAAGGAGUACUAUAAGAAACUCAUUUGUGAUUCUAUAAAACUUCCUAUGAGAUUCUCAAGAAUUUCAAUUGAAAUUUUGACAAAAAGUUCUAUAUUUGCAACUUAAUCAUUAGUACUUGAAGCUCUAUUUCUCUUAAGUUUCGCCCUUAUAUCAGCGUAGAAAAUUAUCACCGCUAUGGGGAACCGAAGACAAACAGAUGCUGACAAGUCCGUAUCGAAAACAAAACAACCCUACCCUAUUUCGCUUAUGUCGAUCCUGUAUAAUUUUCGCAAGAUGCCGCCACGUCCCGACCAAAAUGAAUCCGAAGAGGCAGAAGGACGGUUAUUUGCUCAAGCUAUCAUCCAACGGCAGUACACCACCGAGGACCUUUGUCGGGACAUUUCGGACAGGUCGUCCUUCAGCUCCGGCGACAUCACGGGACUGAUGAUAGCCAUGGAGGAGUUGAUAUUCGAGUAUCUGGCUUCGGGCUAUAGCUUCCGGCUGGGCAAUAUCGGCACAUUAUCGGCCAAAGUAAAAUCGCGCGGAGUAAGAGACAAAAAGGAAAUCCGAUCCGGUUCCGUCCAAGCCGUGGAUAUCAAUUUCCGUUCCACACCGCAAGCCAAACGACGGAUGCGCAGCAUGAGUGUGAAGCGCGGUCCGAGCUUCGGCCAAUCCUGCCCCAAAGCAGACGAGGAAGAACGCUAUCGCUUGGCGGCAGGGCACAUCCGCCACAGAGGAUAUAUUCGGAUAGCCGAGUACAGCACACUAUCCGGCCUGCUCAAACACAGUGCUACAAGGGAACUGAACCACUGGGUACAAGAAGGUAAAUUGGCGACACGCGGACUCUGCUCGCACAAGGUAUACGUCCUGCCUGAACCCACAUCGCAAAACAGUGAAUCGAUAGAUUAGGCAAACA .........((((((((.((...(((((..........((......)).(((((((((((.((((..........((......))....((((((.(((((((..((((((.(((((.((((..........)))).))))).))))))(((((.(((...((((((((....))))))))...))).)))))..))))))).................((((((((((((((.((((((.(((.((((..(((...((((......((((..((......))..))))..)))))))..)))).))).))).)))..)))))((((..((((((....(((.............((((....).)))...)))....))))))...((((.((((..((((((((..........((.....))..(((((..((......((....))......))..(((..(....)..)))....))))))))))))).....((((.....)))).........)))).)))))))).))))))))).))))))..)))))))))..))))))...(((((((((...........(((((((((......(((.(......)))).......(((((..((((...................))))...)))))..)))).))))).(((........)))........))).))))))...)))))..)))))......((((((.(((.((((((.((....))...(((((((((((.((((.((........))))...)))))).)))))))......(((((....((((((((((((....)))))))........))))).((((.((...((.(((((.....((....))....))))).))...)).))))....))))).....)))))).)))))))))..)))))..((..(((((((.......((((......)))).((....))))))))).)). (-278.70) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 1109 80 31 171 122 NC_002950:PG0930|5end_hypothetical_protein_987542..987772_NEGATIVE 469 228 182 167 110 NC_002950:PG1940|5end_elongation_factor_EF-2_2027220..2027450_NEGATIVE 464 513 478 194 155 NC_002950:PG0333|5end_hypothetical_protein_367823..368053_POSITIVE 459 269 229 40 1 NC_002950:PG0736|5end_ribonuclease_HII_785608..785838_POSITIVE 458 260 218 221 170 NC_002950:PG2065|5end_conserved_hypothetical_protein_TIGR00048_2161000..2161230_POSITIVE 443 219 171 83 25 NC_002950:PG1095|5end_RNA_methyltransferase,_TrmA_family_1160225..1160455_POSITIVE 434 210 162 225 172 NC_002950:PG0046|5end_phosphatidate_cytidylyltransferase_57200..57430_NEGATIVE 433 250 201 220 163 NC_002950:PG2214|5end_hypothetical_protein_2326575..2326805_NEGATIVE 433 500 457 159 101 NC_002950:PG0809|5end_hypothetical_protein_872014..872244_NEGATIVE 426 309 268 63 7 NC_002950:PG1466|5end_hypothetical_protein_1542623..1542853_POSITIVE 420 587 544 196 146 NC_002950:PG0171|5end_5'-nucleotidase_family_protein_191724..191954_POSITIVE 419 420 372 53 1 NC_002950:PG2106|5end_hypothetical_protein_2214694..2214924_POSITIVE 418 86 42 143 95 NC_002950:PG2021|5end_hypothetical_protein_2114852..2115082_NEGATIVE 415 225 183 44 1 NC_002950:PG2008|5end_TonB-dependent_receptor,_putative_2095243..2095473_POSITIVE 414 240 192 59 3 NC_002950:PG1657|5end_methylmalonyl-CoA_mutase_1739344..1739574_POSITIVE 412 279 231 210 147 NC_002950:PG2107|5end_thiamine_biosynthesis_protein_ThiH_2216658..2216888_NEGATIVE 412 275 236 174 140 NC_002950:PG1964|5end_bacterial_sugar_transferase_2052910..2053140_POSITIVE 411 265 224 165 120 NC_002950:PG1966|5end_hypothetical_protein_2056924..2057154_NEGATIVE 410 629 583 188 147 NC_002950:PG2125|5end_transcriptional_regulator,_AraC_family_2232254..2232484_NEGATIVE 409 230 181 93 24 NC_002950:PG1863|5end_hypothetical_protein_1960516..1960746_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 473 309 261 143 84 NC_002950:PG0555|3end_DNA-binding_protein,_histone-like_family_611716..611866_NEGATIVE 440 225 182 149 97 NC_002950:PG1941|3end_30S_ribosomal_protein_S7_2027233..2027383_NEGATIVE 427 198 151 145 82 NC_002950:PG0377|3end_30S_ribosomal_protein_S2_407845..407995_POSITIVE 426 309 268 66 10 NC_002950:PG1465|3end_hypothetical_protein_1542706..1542856_POSITIVE 423 525 481 55 3 NC_002950:PG0086|3end_ATP-dependent_RNA_helicase,_DEAD/DEAH_box_family_100545..100695_NEGATIVE 422 240 193 135 82 NC_002950:PG0731|3end_hypothetical_protein_782020..782170_NEGATIVE 421 299 251 92 37 NC_002950:PG1112|3end_hypothetical_protein_1185571..1185721_POSITIVE 418 86 42 139 91 NC_002950:PG2022|3end_hypothetical_protein_2114856..2115006_NEGATIVE 418 86 45 105 65 NC_002950:PG1975|3end_hemagglutinin_protein_HagC_2064350..2064500_POSITIVE 415 290 242 58 1 NC_002950:PG0735|3end_aminotransferase,_class_V_785677..785827_POSITIVE 415 309 262 140 80 NC_002950:PG0520|3end_chaperonin_GroEL_563618..563768_NEGATIVE 414 629 581 139 80 NC_002950:PG0315|3end_50S_ribosomal_protein_L27_348417..348567_POSITIVE 411 620 575 80 36 NC_002950:PG0332|3end_transcription_termination_factor_Rho_367675..367825_POSITIVE 409 230 181 100 31 NC_002950:PG1864|3end_leucine-rich_protein_1960509..1960659_NEGATIVE 408 288 242 141 83 NC_002950:PG0003|3end_hypothetical_protein_1919..2069_NEGATIVE 405 629 582 146 89 NC_002950:PG1768|3end_magnesium_chelatase,_subunit_D/I_family_1856682..1856832_POSITIVE 405 298 254 141 81 NC_002950:PG1013|3end_acetyl-CoA_hydrolase/transferase_family_protein_1073310..1073460_POSITIVE 404 297 253 137 88 NC_002950:PG0443|3end_hemagglutinin-related_protein_483147..483297_POSITIVE 404 298 251 123 70 NC_002950:PG0213|3end_precorrin-3_methylase/precorrin-8X_methylmutase_249058..249208_NEGATIVE 402 257 223 72 36 NC_002950:PG0052|3end_sensor_histidine_kinase_64686..64836_POSITIVE