Origin IGS: tttgtaattgtccttgatatgttgttagtacttacactgtttcgtctcgcaaagataggattattccgtctatatccgatgaaggtttatagcacttttccccttgcgaatctgcggagggaagtcctgtttttctttattcgacatagtgatgagccgttttgttcgatccggctttaggtgagaggggttggatatgtattgaaagcactgtcctccccatggaagaatgtcatccgcatttcattaaaaatacgtgccaaaaaaagttttcaacaacgaagacgagtttggaatgattctaaataagcgcttaaaaagaaccggattttgaggtgaaaaagaagagaaaacaggctccttgtgatctgaatctgcttttccggagtttggatcacgatttatatataaatcatttttgatttgtatataaaacgatttcgatttatatataaatggttttcaataaatatataaatcaaaagtgatttgtatataaatcgtagcccaaaaggctgctttgaggaccggaataaaagaggcacccacccgaagtttgcgaccgaactcgggtgggtgccttatattgcaggtggactgtgctgtgattattccactttatttttcattgaggtgtacttttcttctgtgtgttacaatcgtatgatatagggcaagataggataagccggagaggccggtgaagtgtgtgaggagtcggatacatgtatatatatttttgccgtttgtgtcttgtaattatattcatacaataaggctttcggatgccatgtgtttttgccgatgtaagccttatcgaatacaaaggtagaaaaagaaccgaacagtgaattggctgatgtcgttacagcactgcccgatggtactgtagcgaaggaatccgaatgaaaatgagctacatataaaaaaaactgtaattttgcatcgtgataggcgggtctcatcgttggtggaatccgcaatcacgttgagtaataattaatgtttttaaaacgagaaaagag .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 ctcttttctcgttttaaaaacattaattattactcaacgtgattgcggattccaccaacgatgagacccgcctatcacgatgcaaaattacagttttttttatatgtagctcattttcattcggattccttcgctacagtaccatcgggcagtgctgtaacgacatcagccaattcactgttcggttctttttctacctttgtattcgataaggcttacatcggcaaaaacacatggcatccgaaagccttattgtatgaatataattacaagacacaaacggcaaaaatatatatacatgtatccgactcctcacacacttcaccggcctctccggcttatcctatcttgccctatatcatacgattgtaacacacagaagaaaagtacacctcaatgaaaaataaagtggaataatcacagcacagtccacctgcaatataaggcacccacccgagttcggtcgcaaacttcgggtgggtgcctcttttattccggtcctcaaagcagccttttgggctacgatttatatacaaatcacttttgatttatatatttattgaaaaccatttatatataaatcgaaatcgttttatatacaaatcaaaaatgatttatatataaatcgtgatccaaactccggaaaagcagattcagatcacaaggagcctgttttctcttctttttcacctcaaaatccggttctttttaagcgcttatttagaatcattccaaactcgtcttcgttgttgaaaactttttttggcacgtatttttaatgaaatgcggatgacattcttccatggggaggacagtgctttcaatacatatccaacccctctcacctaaagccggatcgaacaaaacggctcatcactatgtcgaataaagaaaaacaggacttccctccgcagattcgcaaggggaaaagtgctataaaccttcatcggatatagacggaataatcctatctttgcgagacgaaacagtgtaagtactaacaacatatcaaggacaattacaaa Mask Tandem Repeat Region ================================================ tttgtaattgtccttgatatgttgttagtacttacactgtttcgtctcgcaaagataggattattccgtctatatccgatgaaggtttatagcacttttccccttgcgaatctgcggagggaagtcctgtttttctttattcgacatagtgatgagccgttttgttcgatccggctttaggtgagaggggttggatatgtattgaaagcactgtcctccccatggaagaatgtcatccgcatttcattaaaaatacgtgccaaaaaaagttttcaacaacgaagacgagtttggaatgattctaaataagcgcttaaaaagaaccggattttgaggtgaaaaagaagagaaaacaggctccttgtgatctgaatctgcttttccggagtttggatcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaagtgatttgtatataaatcgtagcccaaaaggctgctttgaggaccggaataaaagaggcacccacccgaagtttgcgaccgaactcgggtgggtgccttatattgcaggtggactgtgctgtgattattccactttatttttcattgaggtgtacttttcttctgtgtgttacaatcgtatgatatagggcaagataggataagccggagaggccggtgaagtgtgtgaggagtcggatacatgtatatatatttttgccgtttgtgtcttgtaattatattcatacaataaggctttcggatgccatgtgtttttgccgatgtaagccttatcgaatacaaaggtagaaaaagaaccgaacagtgaattggctgatgtcgttacagcactgcccgatggtactgtagcgaaggaatccgaatgaaaatgagctacatataaaaaaaactgtaattttgcatcgtgataggcgggtctcatcgttggtggaatccgcaatcacgttgagtaataattaatgtttttaaaacgagaaaagag Find is-nt database================================================ Query_seq: PG0903:PG0906|PG0903:PG0906:hypothetical protein:lipoprotein, putative:<-->:969731..970755 1025 tttgtaattgtccttgatatgttgttagtacttacactgtttcgtctcgcaaagataggattattccgtctatatccgatgaaggtttatagcacttttccccttgcgaatctgcggagggaagtcctgtttttctttattcgacatagtgatgagccgttttgttcgatccggctttaggtgagaggggttggatatgtattgaaagcactgtcctccccatggaagaatgtcatccgcatttcattaaaaatacgtgccaaaaaaagttttcaacaacgaagacgagtttggaatgattctaaataagcgcttaaaaagaaccggattttgaggtgaaaaagaagagaaaacaggctccttgtgatctgaatctgcttttccggagtttggatcacgatttatatataaatcatttttgatttgtatataaaacgatttcgatttatatataaatggttttcaataaatatataaatcaaaagtgatttgtatataaatcgtagcccaaaaggctgctttgaggaccggaataaaagaggcacccacccgaagtttgcgaccgaactcgggtgggtgccttatattgcaggtggactgtgctgtgattattccactttatttttcattgaggtgtacttttcttctgtgtgttacaatcgtatgatatagggcaagataggataagccggagaggccggtgaagtgtgtgaggagtcggatacatgtatatatatttttgccgtttgtgtcttgtaattatattcatacaataaggctttcggatgccatgtgtttttgccgatgtaagccttatcgaatacaaaggtagaaaaagaaccgaacagtgaattggctgatgtcgttacagcactgcccgatggtactgtagcgaaggaatccgaatgaaaatgagctacatataaaaaaaactgtaattttgcatcgtgataggcgggtctcatcgttggtggaatccgcaatcacgttgagtaataattaatgtttttaaaacgagaaaagag Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PG0903:PG0906|PG0903:PG0906:hypothetical protein:lipoprotein, putative:<-->:969731..970755 1025 tttgtaattgtccttgatatgttgttagtacttacactgtttcgtctcgcaaagataggattattccgtctatatccgatgaaggtttatagcacttttccccttgcgaatctgcggagggaagtcctgtttttctttattcgacatagtgatgagccgttttgttcgatccggctttaggtgagaggggttggatatgtattgaaagcactgtcctccccatggaagaatgtcatccgcatttcattaaaaatacgtgccaaaaaaagttttcaacaacgaagacgagtttggaatgattctaaataagcgcttaaaaagaaccggattttgaggtgaaaaagaagagaaaacaggctccttgtgatctgaatctgcttttccggagtttggatcacgatttatatataaatcatttttgatttgtatataaaacgatttcgatttatatataaatggttttcaataaatatataaatcaaaagtgatttgtatataaatcgtagcccaaaaggctgctttgaggaccggaataaaagaggcacccacccgaagtttgcgaccgaactcgggtgggtgccttatattgcaggtggactgtgctgtgattattccactttatttttcattgaggtgtacttttcttctgtgtgttacaatcgtatgatatagggcaagataggataagccggagaggccggtgaagtgtgtgaggagtcggatacatgtatatatatttttgccgtttgtgtcttgtaattatattcatacaataaggctttcggatgccatgtgtttttgccgatgtaagccttatcgaatacaaaggtagaaaaagaaccgaacagtgaattggctgatgtcgttacagcactgcccgatggtactgtagcgaaggaatccgaatgaaaatgagctacatataaaaaaaactgtaattttgcatcgtgataggcgggtctcatcgttggtggaatccgcaatcacgttgagtaataattaatgtttttaaaacgagaaaagag Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PG0903:PG0906|PG0903:PG0906:hypothetical protein:lipoprotein, putative:<-->:969731..970755 1025 tttgtaattgtccttgatatgttgttagtacttacactgtttcgtctcgcaaagataggattattccgtctatatccgatgaaggtttatagcacttttccccttgcgaatctgcggagggaagtcctgtttttctttattcgacatagtgatgagccgttttgttcgatccggctttaggtgagaggggttggatatgtattgaaagcactgtcctccccatggaagaatgtcatccgcatttcattaaaaatacgtgccaaaaaaagttttcaacaacgaagacgagtttggaatgattctaaataagcgcttaaaaagaaccggattttgaggtgaaaaagaagagaaaacaggctccttgtgatctgaatctgcttttccggagtttggatcacgatttatatataaatcatttttgatttgtatataaaacgatttcgatttatatataaatggttttcaataaatatataaatcaaaagtgatttgtatataaatcgtagcccaaaaggctgctttgaggaccggaataaaagaggcacccacccgaagtttgcgaccgaactcgggtgggtgccttatattgcaggtggactgtgctgtgattattccactttatttttcattgaggtgtacttttcttctgtgtgttacaatcgtatgatatagggcaagataggataagccggagaggccggtgaagtgtgtgaggagtcggatacatgtatatatatttttgccgtttgtgtcttgtaattatattcatacaataaggctttcggatgccatgtgtttttgccgatgtaagccttatcgaatacaaaggtagaaaaagaaccgaacagtgaattggctgatgtcgttacagcactgcccgatggtactgtagcgaaggaatccgaatgaaaatgagctacatataaaaaaaactgtaattttgcatcgtgataggcgggtctcatcgttggtggaatccgcaatcacgttgagtaataattaatgtttttaaaacgagaaaagag Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 tttgtaattgtccttgatatgttgttagtacttacactgtttcgtctcgcaaagataggattattccgtctatatccgatgaaggtttatagcacttttccccttgcgaatctgcggagggaagtcctgtttttctttattcgacatagtgatgagccgttttgttcgatccggctttaggtgagaggggttggatatgtattgaaagcactgtcctccccatggaagaatgtcatccgcatttcattaaaaatacgtgccaaaaaaagttttcaacaacgaagacgagtttggaatgattctaaataagcgcttaaaaagaaccggattttgaggtgaaaaagaagagaaaacaggctccttgtgatctgaatctgcttttccggagtttggatcacgatttatatataaatcatttttgatttgtatataaaacgatttcgatttatatataaatggttttcaataaatatataaatcaaaagtgatttgtatataaatcgtagcccaaaaggctgctttgaggaccggaataaaagaggcacccacccgaagtttgcgaccgaactcgggtgggtgccttatattgcaggtggactgtgctgtgattattccactttatttttcattgaggtgtacttttcttctgtgtgttacaatcgtatgatatagggcaagataggataagccggagaggccggtgaagtgtgtgaggagtcggatacatgtatatatatttttgccgtttgtgtcttgtaattatattcatacaataaggctttcggatgccatgtgtttttgccgatgtaagccttatcgaatacaaaggtagaaaaagaaccgaacagtgaattggctgatgtcgttacagcactgcccgatggtactgtagcgaaggaatccgaatgaaaatgagctacatataaaaaaaactgtaattttgcatcgtgataggcgggtctcatcgttggtggaatccgcaatcacgttgagtaataattaatgtttttaaaacgagaaaagag Predict ORF larger than 30AA ================================================ Protein_Len: 57 Strand: + Start: 7 End: 177 ...... M V L D M L L V L T L F R L A K I G L F R L Y P M K V Y S T F P L A N L R R E V L F F F I R H S D E P F C S I R L ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 31 Strand: + Start: 89 End: 181 ........................................................................................ M A L F P L R I C G G K S C F S L F D I V M S R F V R S G F R ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 45 Strand: + Start: 162 End: 296 ................................................................................................................................................................. M F D P A L G E R G W I C I E S T V L P M E E C H P H F I K N T C Q K K F S T T K T S L E ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 42 Strand: + Start: 181 End: 306 .................................................................................................................................................................................... M R G V G Y V L K A L S S P W K N V I R I S L K I R A K K S F Q Q R R R V W N D S K ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 55 Strand: + Start: 500 End: 664 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M V A Q K A A L R T G I K E A P T R S L R P N S G G C L I L Q V D C A V I I P L Y F S L R C T F L L C V T I V ......................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 478 End: 669 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M K S D L Y I N R S P K G C F E D R N K R G T H P K F A T E L G W V P Y I A G G L C C D Y S T L F F I E V Y F S S V C Y .................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 43 Strand: + Start: 701 End: 829 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ M K C V R S R I H V Y I F L P F V S C N Y I H T I R L S D A M C F C R C K P Y R I Q R .................................................................................................................................................................................................... Protein_Len: 57 Strand: - Start: 817 End: 987 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ R I C L Y F F F R V T F Q S I D N C C Q G I T S Y R L F G F S F S S C I F F V T I K C R S L R T E D N T S D A I M ...................................... Protein_Len: 60 Strand: - Start: 657 End: 983 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ I Y A K D F V F T S F S G F L S N A S T T V A S G S P V T A F S D S H F H A V Y L F F Q L K A D H Y A P R M T P P I R M .......................................... Protein_Len: 60 Strand: - Start: 629 End: 853 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... C S L I L R L P R H L T H P T P Y M Y I Y K Q R K H R T I I N M C Y P K R I G H T K A S T L R I S Y L P L F L V S C H M ............................................................................................................................................................................ Protein_Len: 38 Strand: - Start: 622 End: 735 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. K E N L H V K R R H T V I T H Y L A L Y S L G S L G T F H T L L R I C T Y M .................................................................................................................................................................................................................................................................................................. Protein_Len: 47 Strand: - Start: 482 End: 622 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. F H N T Y L D Y G L L S S Q P G S Y F L C G G S T Q S R V R T P A K Y Q L H V T S H N N W K M ................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 49 Strand: - Start: 466 End: 612 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Y I Y L D F T I Q I Y I T A W F A A K L V P I F S A G V R L K R G F E P P H R I N C T S Q A T I M ............................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 47 Strand: - Start: 405 End: 545 .................................................................................................................................................................................................................................................................................................................................................................................................................... I Y I M K S K Y I F R N R N I Y L H N E I F I Y I L L S K Y I F R L G F P Q K S S R F L L P M ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 42 Strand: - Start: 276 End: 401 ................................................................................................................................................................................................................................................................................... C R L R T Q F S E L Y A S L F F R I K L H F L L S F L S R T I Q I Q K E P T Q I V M ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 60 Strand: - Start: 250 End: 453 ......................................................................................................................................................................................................................................................... L L S S S N P I I R F L R K F L V P N Q P S F S S F V P E K H D S D A K G S N P D R N I Y L D N K I Q I Y F S K S K Y M ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 53 Strand: - Start: 73 End: 231 ........................................................................ I R H L N I A S K G K R I Q P P F D Q K E K N S M T I L R K T R D P K L H S P N S I Y Q F C Q G G W P L M .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... tttgtaattgtccttgatatgttgttagtacttacactgtttcgtctcgcaaagataggattattccgtctatatccgatgaaggtttatagcacttttccccttgcgaatctgcggagggaagtcctgtttttctttattcgacatagtgatgagccgttttgttcgatccggctttaggtgagaggggttggatatgtattgaaagcactgtcctccccatggaagaatgtcatccgcatttcattaaaaatacgtgccaaaaaaagttttcaacaacgaagacgagtttggaatgattctaaataagcgcttaaaaagaaccggattttgaggtgaaaaagaagagaaaacaggctccttgtgatctgaatctgcttttccggagtttggatcacgatttatatataaatcatttttgatttgtatataaaacgatttcgatttatatataaatggttttcaataaatatataaatcaaaagtgatttgtatataaatcgtagcccaaaaggctgctttgaggaccggaataaaagaggcacccacccgaagtttgcgaccgaactcgggtgggtgccttatattgcaggtggactgtgctgtgattattccactttatttttcattgaggtgtacttttcttctgtgtgttacaatcgtatgatatagggcaagataggataagccggagaggccggtgaagtgtgtgaggagtcggatacatgtatatatatttttgccgtttgtgtcttgtaattatattcatacaataaggctttcggatgccatgtgtttttgccgatgtaagccttatcgaatacaaaggtagaaaaagaaccgaacagtgaattggctgatgtcgttacagcactgcccgatggtactgtagcgaaggaatccgaatgaaaatgagctacatataaaaaaaactgtaattttgcatcgtgataggcgggtctcatcgttggtggaatccgcaatcacgttgagtaataattaatgtttttaaaacgagaaaagag Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ tttgtaattgtccttgatatgttgttagtacttacactgtttcgtctcgcaaagataggattattccgtctatatccgatgaaggtttatagcacttttccccttgcgaatctgcggagggaagtcctgtttttctttattcgacatagtgatgagccgttttgttcgatccggctttaggtgagaggggttggatatgtattgaaagcactgtcctccccatggaagaatgtcatccgcatttcattaaaaatacgtgccaaaaaaagttttcaacaacgaagacgagtttggaatgattctaaataagcgcttaaaaagaaccggattttgaggtgaaaaagaagagaaaacaggctccttgtgatctgaatctgcttttccggagtttggatcacgatttatatataaatcatttttgatttgtatataaaacgatttcgatttatatataaatggttttcaataaatatataaatcaaaagtgatttgtatataaatcgtagcccaaaaggctgctttgaggaccggaataaaagaggcacccacccgaagtttgcgaccgaactcgggtgggtgccttatattgcaggtggactgtgctgtgattattccactttatttttcattgaggtgtacttttcttctgtgtgttacaatcgtatgatatagggcaagataggataagccggagaggccggtgaagtgtgtgaggagtcggatacatgtatatatatttttgccgtttgtgtcttgtaattatattcatacaataaggctttcggatgccatgtgtttttgccgatgtaagccttatcgaatacaaaggtagaaaaagaaccgaacagtgaattggctgatgtcgttacagcactgcccgatggtactgtagcgaaggaatccgaatgaaaatgagctacatataaaaaaaactgtaattttgcatcgtgataggcgggtctcatcgttggtggaatccgcaatcacgttgagtaataattaatgtttttaaaacgagaaaagag Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 55 HP_score: -2.6 Tail_Score: -4.1399 Start: 362 End: 400 Full_Region: GAGAAAACAGGCTCC TTGTGATCTGAATCTG CTTTTC CGGAGTTTGGATCACGA TTTATATATAAATCA .........................................................................................................................................................................................................................................................................................................................................................................TTGTGATCTGAATCTGCTTTTCCGGAGTTTGGATCACGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: + Conf: 77 HP_score: -8.3 Tail_Score: -3.92005 Start: 397 End: 438 Full_Region: TCCGGAGTTTGGATC ACGATTTATATATAAATCA TTTT TGATTTGTATATAAAACGA TTTCGATTTATATAT ............................................................................................................................................................................................................................................................................................................................................................................................................ACGATTTATATATAAATCATTTTTGATTTGTATATAAAACGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 82 HP_score: -11.8 Tail_Score: -2.94118 Start: 398 End: 437 Full_Region: CCGGAGTTTGGATCA CGATTTATATATAAATCA TTTT TGATTTGTATATAAAACG ATTTCGATTTATATA .............................................................................................................................................................................................................................................................................................................................................................................................................CGATTTATATATAAATCATTTTTGATTTGTATATAAAACG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ TransTerm Strand: - Conf: 100 HP_score: -18.0 Tail_Score: -4.66318 Start: 539 End: 583 Full_Region: gtccacctgcaatat aaggcacccacccgagttcg gtcg caaacttcgggtgggtgcctc ttttattccggtcct ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................aaggcacccacccgagttcggtcgcaaacttcgggtgggtgcctc.......................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 100 HP_score: -22.8 Tail_Score: -3.66784 Start: 541 End: 581 Full_Region: GACCGGAATAAAAGA GGCACCCACCCGAAGTTTG CGAC CGAACTCGGGTGGGTGCC TTATATTGCAGGTGG ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCACCCACCCGAAGTTTGCGACCGAACTCGGGTGGGTGCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................ TransTerm Strand: - Conf: 100 HP_score: -20.6 Tail_Score: -3.94438 Start: 541 End: 581 Full_Region: ccacctgcaatataa ggcacccacccgagttcg gtcg caaacttcgggtgggtgcc tcttttattccggtc ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ggcacccacccgagttcggtcgcaaacttcgggtgggtgcc............................................................................................................................................................................................................................................................................................................................................................................................................................................................ Find igs database================================================ Query_seq: PG0903:PG0906|PG0903:PG0906:hypothetical protein:lipoprotein, putative:<-->:969731..970755 1025 tttgtaattgtccttgatatgttgttagtacttacactgtttcgtctcgcaaagataggattattccgtctatatccgatgaaggtttatagcacttttccccttgcgaatctgcggagggaagtcctgtttttctttattcgacatagtgatgagccgttttgttcgatccggctttaggtgagaggggttggatatgtattgaaagcactgtcctccccatggaagaatgtcatccgcatttcattaaaaatacgtgccaaaaaaagttttcaacaacgaagacgagtttggaatgattctaaataagcgcttaaaaagaaccggattttgaggtgaaaaagaagagaaaacaggctccttgtgatctgaatctgcttttccggagtttggatcacgatttatatataaatcatttttgatttgtatataaaacgatttcgatttatatataaatggttttcaataaatatataaatcaaaagtgatttgtatataaatcgtagcccaaaaggctgctttgaggaccggaataaaagaggcacccacccgaagtttgcgaccgaactcgggtgggtgccttatattgcaggtggactgtgctgtgattattccactttatttttcattgaggtgtacttttcttctgtgtgttacaatcgtatgatatagggcaagataggataagccggagaggccggtgaagtgtgtgaggagtcggatacatgtatatatatttttgccgtttgtgtcttgtaattatattcatacaataaggctttcggatgccatgtgtttttgccgatgtaagccttatcgaatacaaaggtagaaaaagaaccgaacagtgaattggctgatgtcgttacagcactgcccgatggtactgtagcgaaggaatccgaatgaaaatgagctacatataaaaaaaactgtaattttgcatcgtgataggcgggtctcatcgttggtggaatccgcaatcacgttgagtaataattaatgtttttaaaacgagaaaagag Intra-Species Hit: Count: 10 Min: 1 Max: 1025 Len: 1025 Subject: NC_002950_PG0903_PG0906|hypothetical protein:lipoprotein, putative|NEGATIVE:POSITIVE|[969731,970755]|1025 HSP 1 e-value: 0.0 bit: 1943.0 Len: 1025 Query Start:1 Query End:1025 Subject Strand: POSITIVE Subject Start: 1 Subject End: 1025 tttgtaattgtccttgatatgttgttagtacttacactgtttcgtctcgcaaagataggattattccgtctatatccgatgaaggtttatagcacttttccccttgcgaatctgcggagggaagtcctgtttttctttattcgacatagtgatgagccgttttgttcgatccggctttaggtgagaggggttggatatgtattgaaagcactgtcctccccatggaagaatgtcatccgcatttcattaaaaatacgtgccnnnnnnngttttcaacaacgaagacgagtttggaatgattctaaataagcgcttaaaaagaaccggattttgaggtgaaaaagaagagaaaacaggctccttgtgatctgaatctgcttttccggagtttggatcacgatttatatataaatcatttttgatttgtatataaaacgatttcgatttatatataaatggttttcaataaatatataaatcaaaagtgatttgtatataaatcgtagcccaaaaggctgctttgaggaccggaataaaagaggcacccacccgaagtttgcgaccgaactcgggtgggtgccttatattgcaggtggactgtgctgtgattattccactttatttttcattgaggtgtacttttcttctgtgtgttacaatcgtatgatatagggcaagataggataagccggagaggccggtgaagtgtgtgaggagtcggatacatgtatatatatttttgccgtttgtgtcttgtaattatattcatacaataaggctttcggatgccatgtgtttttgccgatgtaagccttatcgaatacaaaggtagaaaaagaaccgaacagtgaattggctgatgtcgttacagcactgcccgatggtactgtagcgaaggaatccgaatgaaaatgagctacatatnnnnnnnnctgtaattttgcatcgtgataggcgggtctcatcgttggtggaatccgcaatcacgttgagtaataattaatgtttttaaaacgagaaaagag tttgtaattgtccttgatatgttgttagtacttacactgtttcgtctcgcaaagataggattattccgtctatatccgatgaaggtttatagcacttttccccttgcgaatctgcggagggaagtcctgtttttctttattcgacatagtgatgagccgttttgttcgatccggctttaggtgagaggggttggatatgtattgaaagcactgtcctccccatggaagaatgtcatccgcatttcattaaaaatacgtgccaaaaaaagttttcaacaacgaagacgagtttggaatgattctaaataagcgcttaaaaagaaccggattttgaggtgaaaaagaagagaaaacaggctccttgtgatctgaatctgcttttccggagtttggatcacgatttatatataaatcatttttgatttgtatataaaacgatttcgatttatatataaatggttttcaataaatatataaatcaaaagtgatttgtatataaatcgtagcccaaaaggctgctttgaggaccggaataaaagaggcacccacccgaagtttgcgaccgaactcgggtgggtgccttatattgcaggtggactgtgctgtgattattccactttatttttcattgaggtgtacttttcttctgtgtgttacaatcgtatgatatagggcaagataggataagccggagaggccggtgaagtgtgtgaggagtcggatacatgtatatatatttttgccgtttgtgtcttgtaattatattcatacaataaggctttcggatgccatgtgtttttgccgatgtaagccttatcgaatacaaaggtagaaaaagaaccgaacagtgaattggctgatgtcgttacagcactgcccgatggtactgtagcgaaggaatccgaatgaaaatgagctacatataaaaaaaactgtaattttgcatcgtgataggcgggtctcatcgttggtggaatccgcaatcacgttgagtaataattaatgtttttaaaacgagaaaagag Subject: NC_002950_PG1743_PG1745|2-dehydro-3-deoxyphosphooctonate aldolase:phosphoribulokinase family protein|NEGATIVE:NEGATIVE|[1828439,1829524]|1086 HSP 1 e-value: 5.0E-23 bit: 111.0 Len: 100 Query Start:403 Query End:502 Subject Strand: POSITIVE Subject Start: 420 Subject End: 519 ..................................................................................................................................................................................................................................................................................................................................................................................................................tatatataaatcatttttgatttgtatataaaacgatttcgatttatatataaatggttttcaataaatatataaatcaaaagtgatttgtatataaatc........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ..................................................................................................................................................................................................................................................................................................................................................................................................................tatatattaatcatttttgatttatatataaatcgttttcattttgtatataaatgattttcaataaatatatagatcgaaaatgatttgtatataaatc........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 4.0E-8 bit: 61.9 Len: 43 Query Start:269 Query End:311 Subject Strand: POSITIVE Subject Start: 286 Subject End: 328 ............................................................................................................................................................................................................................................................................gttttcaacaacgaagacgagtttggaatgattctaaataagc.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ............................................................................................................................................................................................................................................................................gttttcaacaacgaagaagtgtttggaatgattccaaataagc.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: NC_002950_PG1119_PG1121|flavodoxin, putative:asparaginyl-tRNA synthetase|POSITIVE:NEGATIVE|[1195544,1196235]|692 HSP 1 e-value: 7.0E-19 bit: 97.6 Len: 105 Query Start:397 Query End:501 Subject Strand: POSITIVE Subject Start: 294 Subject End: 398 ............................................................................................................................................................................................................................................................................................................................................................................................................acgatttatatataaatcatttttgatttgtatataaaacgatttcgatttatatataaatggttttcaataaatatataaatcaaaagtgatttgtatataaat............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ ............................................................................................................................................................................................................................................................................................................................................................................................................acgatctatatataaagcatttttaatttatatacagatcgttttcgatttatatacaaatcgttttcaataaatatataaatcaaaactcgtttatatataaat............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ HSP 2 e-value: 2.0E-10 bit: 69.9 Len: 55 Query Start:270 Query End:324 Subject Strand: POSITIVE Subject Start: 167 Subject End: 221 .............................................................................................................................................................................................................................................................................ttttcaacaacgaagacgagtttggaatgattctaaataagcgcttaaaaagaac............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. .............................................................................................................................................................................................................................................................................ttttcaacaacgaagacaagtttggaatcattctaaataaacgcctgaaaagaac............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: NC_002950_PG0404_PG0408|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[440197,441041]|845 HSP 1 e-value: 1.0E-17 bit: 93.7 Len: 107 Query Start:397 Query End:503 Subject Strand: NEGATIVE Subject Start: 435 Subject End: 541 ............................................................................................................................................................................................................................................................................................................................................................................................................acgatttatatataaatcatttttgatttgtatataaaacgatttcgatttatatataaatggttttcaataaatatataaatcaaaagtgatttgtatataaatcg.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ............................................................................................................................................................................................................................................................................................................................................................................................................acgatttgtatataaatgactttcaatttatatataaatggttttcgttttatatataaatcgttttcaataaatatatagatcgtaagtgattcgtatataaatcg.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 7.0E-13 bit: 77.8 Len: 43 Query Start:269 Query End:311 Subject Strand: NEGATIVE Subject Start: 627 Subject End: 669 ............................................................................................................................................................................................................................................................................gttttcaacaacgaagacgagtttggaatgattctaaataagc.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ............................................................................................................................................................................................................................................................................gttttcaacaacgaagacgagtttggaatgattccaaataagc.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: NC_002950_PG0994_PG0995|hypothetical protein:hypothetical protein|POSITIVE:NEGATIVE|[1055160,1055558]|399 HSP 1 e-value: 4.0E-14 bit: 81.8 Len: 105 Query Start:397 Query End:501 Subject Strand: NEGATIVE Subject Start: 238 Subject End: 342 ............................................................................................................................................................................................................................................................................................................................................................................................................acgatttatatataaatcatttttgatttgtatataaaacgatttcgatttatatataaatggttttcaataaatatataaatcaaaagtgatttgtatataaat............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ ............................................................................................................................................................................................................................................................................................................................................................................................................acgatttatatataaaccattttcaatttatatatagattgttttagatttatatataaaacgttttcaataaatatatagatcataaatgatttatacataaat............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Subject: NC_002950_PG1130_PG1132|TPR domain protein:valyl-tRNA synthetase|POSITIVE:POSITIVE|[1210191,1211051]|861 HSP 1 e-value: 4.0E-11 bit: 71.9 Len: 60 Query Start:398 Query End:457 Subject Strand: NEGATIVE Subject Start: 361 Subject End: 420 .............................................................................................................................................................................................................................................................................................................................................................................................................cgatttatatataaatcatttttgatttgtatataaaacgatttcgatttatatataaat........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ .............................................................................................................................................................................................................................................................................................................................................................................................................cgatttatatataaatcattttcgatctgtatattaatcgttttcaatttatatataaat........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ HSP 2 e-value: 2.0E-10 bit: 69.9 Len: 43 Query Start:269 Query End:311 Subject Strand: NEGATIVE Subject Start: 529 Subject End: 571 ............................................................................................................................................................................................................................................................................gttttcaacaacgaagacgagtttggaatgattctaaataagc.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ............................................................................................................................................................................................................................................................................gttttcaacaacgaagatgagttttgaatgattctaaataagc.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 3 e-value: 3.0E-6 bit: 56.0 Len: 84 Query Start:397 Query End:480 Subject Strand: NEGATIVE Subject Start: 360 Subject End: 443 ............................................................................................................................................................................................................................................................................................................................................................................................................acgatttatatataaatcatttttgatttgtatataaaacgatttcgatttatatataaatggttttcaataaatatataaatc................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ............................................................................................................................................................................................................................................................................................................................................................................................................acgatttgtatatcaaccattttcgatttatatataaatcattttcgatctgtatattaatcgttttcaatttatatataaatc................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: NC_002950_PG0022_PG0024|sulfate permease family protein:redox-sensing transcriptional repressor Rex|NEGATIVE:POSITIVE|[26887,27871]|985 HSP 1 e-value: 4.0E-11 bit: 71.9 Len: 44 Query Start:269 Query End:312 Subject Strand: POSITIVE Subject Start: 241 Subject End: 284 ............................................................................................................................................................................................................................................................................gttttcaacaacgaagacgagtttggaatgattctaaataagcg......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ............................................................................................................................................................................................................................................................................gttttcaacaacgaagaagagtttggaatcattctaaataagcg......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 1.0E-8 bit: 63.9 Len: 60 Query Start:398 Query End:457 Subject Strand: POSITIVE Subject Start: 414 Subject End: 473 .............................................................................................................................................................................................................................................................................................................................................................................................................cgatttatatataaatcatttttgatttgtatataaaacgatttcgatttatatataaat........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ .............................................................................................................................................................................................................................................................................................................................................................................................................cgatttatatataaatcattttccatttgtatatagatcgtattcgatttgtatataaat........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Subject: NC_002950_PG0340_PG0343|hypothetical protein:methionine gamma-lyase|POSITIVE:NEGATIVE|[376497,377270]|774 HSP 1 e-value: 2.0E-10 bit: 69.9 Len: 43 Query Start:269 Query End:311 Subject Strand: NEGATIVE Subject Start: 581 Subject End: 623 ............................................................................................................................................................................................................................................................................gttttcaacaacgaagacgagtttggaatgattctaaataagc.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ............................................................................................................................................................................................................................................................................gttttcaacaacgaagacgagtttggaatcattccaaataagc.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 4.0E-8 bit: 61.9 Len: 87 Query Start:394 Query End:480 Subject Strand: NEGATIVE Subject Start: 412 Subject End: 498 .........................................................................................................................................................................................................................................................................................................................................................................................................atcacgatttatatataaatcatttttgatttgtatataaaacgatttcgatttatatataaatggttttcaataaatatataaatc................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. .........................................................................................................................................................................................................................................................................................................................................................................................................atcacgatttatatataaagctttttcgatttgtatatatatcgttttcattttgtatataaatcatttttaatttatatataaatc................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: NC_002950_PG1411_PG1414|potassium uptake protein TrkA, putative:hypothetical protein|NEGATIVE:POSITIVE|[1495257,1497148]|1892 HSP 1 e-value: 4.0E-8 bit: 61.9 Len: 43 Query Start:269 Query End:311 Subject Strand: POSITIVE Subject Start: 1089 Subject End: 1131 ............................................................................................................................................................................................................................................................................gttttcaacaacgaagacgagtttggaatgattctaaataagc.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ............................................................................................................................................................................................................................................................................gttttcaacaacgaagcggaatttggaatgattctaaataagc.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 6.0E-7 bit: 58.0 Len: 65 Query Start:439 Query End:503 Subject Strand: POSITIVE Subject Start: 1259 Subject End: 1323 ......................................................................................................................................................................................................................................................................................................................................................................................................................................................tttcgatttatatataaatggttttcaataaatatataaatcaaaagtgatttgtatataaatcg.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ......................................................................................................................................................................................................................................................................................................................................................................................................................................................tttcgatttgtatataaatcattttcaatttatatatagatcgaaactcatttgtatataaatcg.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: NC_002950_PG1013_PG1014|acetyl-CoA hydrolase/transferase family protein:TPR domain protein|POSITIVE:POSITIVE|[1073371,1073902]|532 HSP 1 e-value: 2.0E-7 bit: 60.0 Len: 50 Query Start:535 Query End:584 Subject Strand: NEGATIVE Subject Start: 77 Subject End: 125 ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................aaaagaggcacccacccgaagtttgcgaccgaactcgggtgggtgcctta......................................................................................................................................................................................................................................................................................................................................................................................................................................................... ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................aaaagaggcacccaccc-aagttcgcgaccgaactcgggcgagtgcctta......................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 3.0E-6 bit: 56.0 Len: 44 Query Start:269 Query End:312 Subject Strand: NEGATIVE Subject Start: 330 Subject End: 373 ............................................................................................................................................................................................................................................................................gttttcaacaacgaagacgagtttggaatgattctaaataagcg......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ............................................................................................................................................................................................................................................................................gttttcaacaatgaagagaagtttggaatggttctaaataagcg......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UUUGUAAUUGUCCUUGAUAUGUUGUUAGUACUUACACUGUUUCGUCUCGCAAAGAUAGGAUUAUUCCGUCUAUAUCCGAUGAAGGUUUAUAGCACUUUUCCCCUUGCGAAUCUGCGGAGGGAAGUCCUGUUUUUCUUUAUUCGACAUAGUGAUGAGCCGUUUUGUUCGAUCCGGCUUUAGGUGAGAGGGGUUGGAUAUGUAUUGAAAGCACUGUCCUCCCCAUGGAAGAAUGUCAUCCGCAUUUCAUUAAAAAUACGUGCCAAAAAAAGUUUUCAACAACGAAGACGAGUUUGGAAUGAUUCUAAAUAAGCGCUUAAAAAGAACCGGAUUUUGAGGUGAAAAAGAAGAGAAAACAGGCUCCUUGUGAUCUGAAUCUGCUUUUCCGGAGUUUGGAUCACGAUUUAUAUAUAAAUCAUUUUUGAUUUGUAUAUAAAACGAUUUCGAUUUAUAUAUAAAUGGUUUUCAAUAAAUAUAUAAAUCAAAAGUGAUUUGUAUAUAAAUCGUAGCCCAAAAGGCUGCUUUGAGGACCGGAAUAAAAGAGGCACCCACCCGAAGUUUGCGACCGAACUCGGGUGGGUGCCUUAUAUUGCAGGUGGACUGUGCUGUGAUUAUUCCACUUUAUUUUUCAUUGAGGUGUACUUUUCUUCUGUGUGUUACAAUCGUAUGAUAUAGGGCAAGAUAGGAUAAGCCGGAGAGGCCGGUGAAGUGUGUGAGGAGUCGGAUACAUGUAUAUAUAUUUUUGCCGUUUGUGUCUUGUAAUUAUAUUCAUACAAUAAGGCUUUCGGAUGCCAUGUGUUUUUGCCGAUGUAAGCCUUAUCGAAUACAAAGGUAGAAAAAGAACCGAACAGUGAAUUGGCUGAUGUCGUUACAGCACUGCCCGAUGGUACUGUAGCGAAGGAAUCCGAAUGAAAAUGAGCUACAUAUAAAAAAAACUGUAAUUUUGCAUCGUGAUAGGCGGGUCUCAUCGUUGGUGGAAUCCGCAAUCACGUUGAGUAAUAAUUAAUGUUUUUAAAACGAGAAAAGAG ............((((((((((.(((........((((((((.((.((((..((((.(((....)))))))...((.((((((((...((((.(((..((((..((((....))))..))))))).))))...)))))))).))....))))...(((.((.((((((((..(((((..((..(((((((..((((((((.......))).))))).))))........(((.((((((.............((((((((((((....((((((......))))))...)))))..(((((((......((((((.......(((((.((((..(((((((((..((((......((.(((((((((((..((((((......)))).))..))))))(((((((((((((((((((((((((((((((((.....((...(.(((((....))))).)...)).....)))))))))))))))))))))))))))))))))((((((.....))))))...)))))))(((((((..(((((((((((((((.(((((....)))))))))))))))))))).....((((.....)))).......))))))).)))).)))))))))..(((.(((((.((((((.(((((((........))))))).)).)))).))).)).))).))))..))))).))))))....)))))))....)))))))..........(((..((((((...(((....)))..))))))...)))...)))))).)))....)))..)).....)))))..)))))))).)).))).........)).))))))))..((((......(((((((((...((((....)))))))))))))......)))).........))).))))))...((((((..(((((((((..((((((..((((((..(((.....)))..)))))).))))))....)))).)))))..))))))....))))....... (-331.20) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ CUCUUUUCUCGUUUUAAAAACAUUAAUUAUUACUCAACGUGAUUGCGGAUUCCACCAACGAUGAGACCCGCCUAUCACGAUGCAAAAUUACAGUUUUUUUUAUAUGUAGCUCAUUUUCAUUCGGAUUCCUUCGCUACAGUACCAUCGGGCAGUGCUGUAACGACAUCAGCCAAUUCACUGUUCGGUUCUUUUUCUACCUUUGUAUUCGAUAAGGCUUACAUCGGCAAAAACACAUGGCAUCCGAAAGCCUUAUUGUAUGAAUAUAAUUACAAGACACAAACGGCAAAAAUAUAUAUACAUGUAUCCGACUCCUCACACACUUCACCGGCCUCUCCGGCUUAUCCUAUCUUGCCCUAUAUCAUACGAUUGUAACACACAGAAGAAAAGUACACCUCAAUGAAAAAUAAAGUGGAAUAAUCACAGCACAGUCCACCUGCAAUAUAAGGCACCCACCCGAGUUCGGUCGCAAACUUCGGGUGGGUGCCUCUUUUAUUCCGGUCCUCAAAGCAGCCUUUUGGGCUACGAUUUAUAUACAAAUCACUUUUGAUUUAUAUAUUUAUUGAAAACCAUUUAUAUAUAAAUCGAAAUCGUUUUAUAUACAAAUCAAAAAUGAUUUAUAUAUAAAUCGUGAUCCAAACUCCGGAAAAGCAGAUUCAGAUCACAAGGAGCCUGUUUUCUCUUCUUUUUCACCUCAAAAUCCGGUUCUUUUUAAGCGCUUAUUUAGAAUCAUUCCAAACUCGUCUUCGUUGUUGAAAACUUUUUUUGGCACGUAUUUUUAAUGAAAUGCGGAUGACAUUCUUCCAUGGGGAGGACAGUGCUUUCAAUACAUAUCCAACCCCUCUCACCUAAAGCCGGAUCGAACAAAACGGCUCAUCACUAUGUCGAAUAAAGAAAAACAGGACUUCCCUCCGCAGAUUCGCAAGGGGAAAAGUGCUAUAAACCUUCAUCGGAUAUAGACGGAAUAAUCCUAUCUUUGCGAGACGAAACAGUGUAAGUACUAACAACAUAUCAAGGACAAUUACAAA ..........(((((((((((..(((((......((.((((((.((((.(..((.......))..).))))..)))))).))...)))))..))))))...((((((.............((((((....(((.((((((((.........)))))))).))).....(((............(((.........))).((((((((((((((((((...((((......(....)....))))))))))))))....))))))))...............)))..................))))))...((.((((......((((.....)))).........((((((.(((((((....((((((..(((.................................)))..))))))..(((((.((((..((((......(((((((((((((((((.(....).))).))))))))))))))......((((((...............(((((..(((((((((((((.((((((.(((((((((..........((.....))....((((((((.((....)).)))))))).))))))))).)))))).)))))))))))))..)))))..))))))..)))).......(((((.((((((((((((((((....................((((((...(((....)))...))))))...........(((.((..(((..(((.....)))..)))((((((((....)))))))))).)))..........))))))))))).)))))............................(((((............)))))........))).)).............)))).(((((..((......))..)))))...)))))..............)))))))..(((....))).......)))))).......)))).))........))))))..)))))......... (-254.54) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 987 130 81 221 172 NC_002950:PG0903|5end_hypothetical_protein_969640..969870_NEGATIVE 691 310 263 202 155 NC_002950:PG1148|5end_hypothetical_protein_1231204..1231434_POSITIVE 633 300 256 228 185 NC_002950:PG1166|5end_hypothetical_protein_1248443..1248673_NEGATIVE 587 300 251 224 176 NC_002950:PG0996|5end_conserved_hypothetical_protein_TIGR01777_1055592..1055822_POSITIVE 444 893 858 143 108 NC_002950:PG0522|5end_tRNA_delta(2)-isopentenylpyrophosphate_transferase_566901..567131_NEGATIVE 436 209 161 137 92 NC_002950:PG1675|5end_hypothetical_protein_1760182..1760412_POSITIVE 432 729 682 81 21 NC_002950:PG1866|5end_hypothetical_protein_1964531..1964761_POSITIVE 424 149 104 152 95 NC_002950:PG1759|5end_adhesion_protein,_putative_1845570..1845800_POSITIVE 411 150 101 221 166 NC_002950:PG0451|5end_CBS_domain_protein_491519..491749_POSITIVE 407 904 863 214 162 NC_002950:PG0430|5end_ferrodoxin_oxidoreductase_beta_subunit_467986..468216_POSITIVE 405 550 501 65 19 NC_002950:PG1992|5end_glucose-inhibited_division_protein_A_2081410..2081640_POSITIVE 404 720 671 205 148 NC_002950:PG1196|5end_hypothetical_protein_1275127..1275357_POSITIVE 402 195 156 223 184 NC_002950:PG1252|5end_hypothetical_protein_1329584..1329814_NEGATIVE 401 582 541 78 40 NC_002950:PG1223|5end_hypothetical_protein_1299461..1299691_POSITIVE 397 904 870 71 36 NC_002950:PG1946|5end_ABC_3_transporter_family_protein_2032133..2032363_POSITIVE 392 590 542 52 1 NC_002950:PG0371|5end_hypothetical_protein_404043..404273_POSITIVE 391 720 673 85 23 NC_002950:PG0884|5end_hypothetical_protein_946479..946709_POSITIVE 389 720 671 187 136 NC_002950:PG0496|5end_hypothetical_protein_537168..537398_POSITIVE 387 749 701 178 115 NC_002950:PG1352|5end_hypothetical_protein_1433150..1433380_NEGATIVE 387 987 944 58 14 NC_002950:PG0733|5end_riboflavin_synthase_subunit_alpha_783174..783404_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 575 590 541 56 13 NC_002950:PG1274|3end_elongation_factor_P_1352489..1352639_POSITIVE 472 580 533 53 9 NC_002950:PG1866|3end_hypothetical_protein_1964736..1964886_POSITIVE 444 893 858 146 111 NC_002950:PG0523|3end_inositol-5-monophosphate_dehydrogenase_566898..567048_NEGATIVE 439 579 535 50 5 NC_002950:PG0568|3end_elongation_factor_P_623999..624149_NEGATIVE 405 559 513 151 98 NC_002950:PG0492|3end_hypothetical_protein_534408..534558_NEGATIVE 402 597 551 150 114 NC_002950:PG0441|3end_hypothetical_protein_481447..481597_POSITIVE 399 580 537 80 22 NC_002950:PG1152|3end_hypothetical_protein_1234674..1234824_NEGATIVE 397 904 870 78 43 NC_002950:PG1945|3end_hypothetical_protein_2032220..2032370_POSITIVE 391 720 673 88 26 NC_002950:PG0883|3end_hypothetical_protein_946562..946712_POSITIVE 387 722 681 49 3 NC_002950:PG2071|3end_hypothetical_protein_2167452..2167602_POSITIVE 387 749 701 127 64 NC_002950:PG1353|3end_orotate_phosphoribosyltransferase_1433201..1433351_NEGATIVE 384 587 542 149 102 NC_002950:PG0371|3end_hypothetical_protein_404224..404374_POSITIVE 371 391 353 140 95 NC_002950:PG1592|3end_HDIG_domain_protein_1671535..1671685_POSITIVE 370 890 841 57 2 NC_002950:PG1754|3end_hypothetical_protein_1842284..1842434_POSITIVE 370 710 662 48 4 NC_002950:PG1479|3end_conjugative_transposon_protein_TraJ_1554128..1554278_NEGATIVE 366 556 511 125 83 NC_002950:PG1402|3end_AP_endonuclease_domain_protein_1485031..1485181_NEGATIVE 363 297 257 91 54 NC_002950:PG2166|3end_hypothetical_protein_2271999..2272149_POSITIVE 360 708 664 60 13 NC_002950:PG2188|3end_diaminopimelate_decarboxylase_2294633..2294783_NEGATIVE 359 717 673 64 18 NC_002950:PG2000|3end_signal_peptidase-related_protein_2088842..2088992_NEGATIVE 358 219 171 78 31 NC_002950:PG1769|3end_hypothetical_protein_1857010..1857160_POSITIVE