Origin IGS: gccgcttgatgtgtgaagaaaacccatcaaaagatccgatccgattgtacaaaatccatgaggtgtagatggacccgaatcttttcttcgacaaataacaagaacaactaaagttcagagaatcccgaaagttcagacaaaaactttcggggttttattttttgctgatgtcccttgcgacaattgattaacgtcagttcggcgtaagaaaacgccaatgtattcgttccccgattagcgggttacacactaagatcttgggagttataggttgttccgttcaggcaattgtatagggggcaatcctgcttctgcccggatcggaccaacattgaaattcggattgcttttgaccgaatgttgcagtccgcaccggaagatgggctataccacaaggcagatggcggtattccgtagaggataacgggctatcccatacggctcttcgagctacgctgtagagctcggcgaggtacgctctacagcgtagcgagccgagccgtagagttccgctccgtgagccgtagatgtggccgagctgagccgtagggcccggcgcggtgagccctacagcgtagcttgaagagccgtagagcgcagctcggtacgctctacggcgtagcccgagtcgctgtagggcgtagctcgaccccctttcggcgtatgttccgaatggctataaaacaatgcggattcgatctgaagaaaatatgcaatatgctgtttgtcagcgtatttcatttctcggttgagaaatttcagcttcgagaggcttcgacatccgatgagacgtcaaactttttccctttcattttctgattcgattatagtcaatatcccaacaagagagagtcggcaccatatcgcttacatcgaactcacgtttgattagccacttttcgaagaaagattaggatctattctggcaaaagctcttaagctttccgcgaaatagttttaactattcatcgaaatggttctaagtactctgtgaaaagcttacaagcttttcacagagtatttaatacttttgtgtctatacctcaagaagattgaggaataaaccaatgcagttccggcttttccgagaaagcttaaggtattcacttgcacaccacttcttattc .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 gaataagaagtggtgtgcaagtgaataccttaagctttctcggaaaagccggaactgcattggtttattcctcaatcttcttgaggtatagacacaaaagtattaaatactctgtgaaaagcttgtaagcttttcacagagtacttagaaccatttcgatgaatagttaaaactatttcgcggaaagcttaagagcttttgccagaatagatcctaatctttcttcgaaaagtggctaatcaaacgtgagttcgatgtaagcgatatggtgccgactctctcttgttgggatattgactataatcgaatcagaaaatgaaagggaaaaagtttgacgtctcatcggatgtcgaagcctctcgaagctgaaatttctcaaccgagaaatgaaatacgctgacaaacagcatattgcatattttcttcagatcgaatccgcattgttttatagccattcggaacatacgccgaaagggggtcgagctacgccctacagcgactcgggctacgccgtagagcgtaccgagctgcgctctacggctcttcaagctacgctgtagggctcaccgcgccgggccctacggctcagctcggccacatctacggctcacggagcggaactctacggctcggctcgctacgctgtagagcgtacctcgccgagctctacagcgtagctcgaagagccgtatgggatagcccgttatcctctacggaataccgccatctgccttgtggtatagcccatcttccggtgcggactgcaacattcggtcaaaagcaatccgaatttcaatgttggtccgatccgggcagaagcaggattgccccctatacaattgcctgaacggaacaacctataactcccaagatcttagtgtgtaacccgctaatcggggaacgaatacattggcgttttcttacgccgaactgacgttaatcaattgtcgcaagggacatcagcaaaaaataaaaccccgaaagtttttgtctgaactttcgggattctctgaactttagttgttcttgttatttgtcgaagaaaagattcgggtccatctacacctcatggattttgtacaatcggatcggatcttttgatgggttttcttcacacatcaagcggc Mask Tandem Repeat Region ================================================ gccgcttgatgtgtgaagaaaacccatcaaaagatccgatccgattgtacaaaatccatgaggtgtagatggacccgaatcttttcttcgacaaataacaagaacaactaaagttcagagaatcccgaaagttcagacaaaaactttcggggttttattttttgctgatgtcccttgcgacaattgattaacgtcagttcggcgtaagaaaacgccaatgtattcgttccccgattagcgggttacacactaagatcttgggagttataggttgttccgttcaggcaattgtatagggggcaatcctgcttctgcccggatcggaccaacattgaaattcggattgcttttgaccgaatgttgcagtccgcaccggaagatgggctataccacaaggcagatggcggtattccgtagaggataacgggctatcccatacggctcttcgagctacgctgtagagctcggcgaggtacgctctacagcgtagcgagccgagccgtagagttccgctccgtgagccgtagatgtggccgagctgagccgtagggcccggcgcggtgagccctacagcgtagcttgaagagccgtagagcgcagctcggtacgctctacggcgtagcccgagtcgctgtagggcgtagctcgaccccctttcggcgtatgttccgaatggctataaaacaatgcggattcgatctgaagaaaatatgcaatatgctgtttgtcagcgtatttcatttctcggttgagaaatttcagcttcgagaggcttcgacatccgatgagacgtcaaactttttccctttcattttctgattcgattatagtcaatatcccaacaagagagagtcggcaccatatcgcttacatcgaactcacgtttgattagccacttttcgaagaaagattaggatctattctggcaaaagctcttaagctttccgcgaaatagttttaactattcatcgaaatggttctaagtactctgtgaaaagcttacaagcttttcacagagtatttaatacttttgtgtctatacctcaagaagattgaggaataaaccaatgcagttccggcttttccgagaaagcttaaggtattcacttgcacaccacttcttattc Find is-nt database================================================ Query_seq: PG0890:PG0893|PG0890:PG0893:alkaline phosphatase, putative:hydroxylamine reductase:-><-:953164..954290 1127 gccgcttgatgtgtgaagaaaacccatcaaaagatccgatccgattgtacaaaatccatgaggtgtagatggacccgaatcttttcttcgacaaataacaagaacaactaaagttcagagaatcccgaaagttcagacaaaaactttcggggttttattttttgctgatgtcccttgcgacaattgattaacgtcagttcggcgtaagaaaacgccaatgtattcgttccccgattagcgggttacacactaagatcttgggagttataggttgttccgttcaggcaattgtatagggggcaatcctgcttctgcccggatcggaccaacattgaaattcggattgcttttgaccgaatgttgcagtccgcaccggaagatgggctataccacaaggcagatggcggtattccgtagaggataacgggctatcccatacggctcttcgagctacgctgtagagctcggcgaggtacgctctacagcgtagcgagccgagccgtagagttccgctccgtgagccgtagatgtggccgagctgagccgtagggcccggcgcggtgagccctacagcgtagcttgaagagccgtagagcgcagctcggtacgctctacggcgtagcccgagtcgctgtagggcgtagctcgaccccctttcggcgtatgttccgaatggctataaaacaatgcggattcgatctgaagaaaatatgcaatatgctgtttgtcagcgtatttcatttctcggttgagaaatttcagcttcgagaggcttcgacatccgatgagacgtcaaactttttccctttcattttctgattcgattatagtcaatatcccaacaagagagagtcggcaccatatcgcttacatcgaactcacgtttgattagccacttttcgaagaaagattaggatctattctggcaaaagctcttaagctttccgcgaaatagttttaactattcatcgaaatggttctaagtactctgtgaaaagcttacaagcttttcacagagtatttaatacttttgtgtctatacctcaagaagattgaggaataaaccaatgcagttccggcttttccgagaaagcttaaggtattcacttgcacaccacttcttattc Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PG0890:PG0893|PG0890:PG0893:alkaline phosphatase, putative:hydroxylamine reductase:-><-:953164..954290 1127 gccgcttgatgtgtgaagaaaacccatcaaaagatccgatccgattgtacaaaatccatgaggtgtagatggacccgaatcttttcttcgacaaataacaagaacaactaaagttcagagaatcccgaaagttcagacaaaaactttcggggttttattttttgctgatgtcccttgcgacaattgattaacgtcagttcggcgtaagaaaacgccaatgtattcgttccccgattagcgggttacacactaagatcttgggagttataggttgttccgttcaggcaattgtatagggggcaatcctgcttctgcccggatcggaccaacattgaaattcggattgcttttgaccgaatgttgcagtccgcaccggaagatgggctataccacaaggcagatggcggtattccgtagaggataacgggctatcccatacggctcttcgagctacgctgtagagctcggcgaggtacgctctacagcgtagcgagccgagccgtagagttccgctccgtgagccgtagatgtggccgagctgagccgtagggcccggcgcggtgagccctacagcgtagcttgaagagccgtagagcgcagctcggtacgctctacggcgtagcccgagtcgctgtagggcgtagctcgaccccctttcggcgtatgttccgaatggctataaaacaatgcggattcgatctgaagaaaatatgcaatatgctgtttgtcagcgtatttcatttctcggttgagaaatttcagcttcgagaggcttcgacatccgatgagacgtcaaactttttccctttcattttctgattcgattatagtcaatatcccaacaagagagagtcggcaccatatcgcttacatcgaactcacgtttgattagccacttttcgaagaaagattaggatctattctggcaaaagctcttaagctttccgcgaaatagttttaactattcatcgaaatggttctaagtactctgtgaaaagcttacaagcttttcacagagtatttaatacttttgtgtctatacctcaagaagattgaggaataaaccaatgcagttccggcttttccgagaaagcttaaggtattcacttgcacaccacttcttattc Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PG0890:PG0893|PG0890:PG0893:alkaline phosphatase, putative:hydroxylamine reductase:-><-:953164..954290 1127 gccgcttgatgtgtgaagaaaacccatcaaaagatccgatccgattgtacaaaatccatgaggtgtagatggacccgaatcttttcttcgacaaataacaagaacaactaaagttcagagaatcccgaaagttcagacaaaaactttcggggttttattttttgctgatgtcccttgcgacaattgattaacgtcagttcggcgtaagaaaacgccaatgtattcgttccccgattagcgggttacacactaagatcttgggagttataggttgttccgttcaggcaattgtatagggggcaatcctgcttctgcccggatcggaccaacattgaaattcggattgcttttgaccgaatgttgcagtccgcaccggaagatgggctataccacaaggcagatggcggtattccgtagaggataacgggctatcccatacggctcttcgagctacgctgtagagctcggcgaggtacgctctacagcgtagcgagccgagccgtagagttccgctccgtgagccgtagatgtggccgagctgagccgtagggcccggcgcggtgagccctacagcgtagcttgaagagccgtagagcgcagctcggtacgctctacggcgtagcccgagtcgctgtagggcgtagctcgaccccctttcggcgtatgttccgaatggctataaaacaatgcggattcgatctgaagaaaatatgcaatatgctgtttgtcagcgtatttcatttctcggttgagaaatttcagcttcgagaggcttcgacatccgatgagacgtcaaactttttccctttcattttctgattcgattatagtcaatatcccaacaagagagagtcggcaccatatcgcttacatcgaactcacgtttgattagccacttttcgaagaaagattaggatctattctggcaaaagctcttaagctttccgcgaaatagttttaactattcatcgaaatggttctaagtactctgtgaaaagcttacaagcttttcacagagtatttaatacttttgtgtctatacctcaagaagattgaggaataaaccaatgcagttccggcttttccgagaaagcttaaggtattcacttgcacaccacttcttattc Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 gccgcttgatgtgtgaagaaaacccatcaaaagatccgatccgattgtacaaaatccatgaggtgtagatggacccgaatcttttcttcgacaaataacaagaacaactaaagttcagagaatcccgaaagttcagacaaaaactttcggggttttattttttgctgatgtcccttgcgacaattgattaacgtcagttcggcgtaagaaaacgccaatgtattcgttccccgattagcgggttacacactaagatcttgggagttataggttgttccgttcaggcaattgtatagggggcaatcctgcttctgcccggatcggaccaacattgaaattcggattgcttttgaccgaatgttgcagtccgcaccggaagatgggctataccacaaggcagatggcggtattccgtagaggataacgggctatcccatacggctcttcgagctacgctgtagagctcggcgaggtacgctctacagcgtagcgagccgagccgtagagttccgctccgtgagccgtagatgtggccgagctgagccgtagggcccggcgcggtgagccctacagcgtagcttgaagagccgtagagcgcagctcggtacgctctacggcgtagcccgagtcgctgtagggcgtagctcgaccccctttcggcgtatgttccgaatggctataaaacaatgcggattcgatctgaagaaaatatgcaatatgctgtttgtcagcgtatttcatttctcggttgagaaatttcagcttcgagaggcttcgacatccgatgagacgtcaaactttttccctttcattttctgattcgattatagtcaatatcccaacaagagagagtcggcaccatatcgcttacatcgaactcacgtttgattagccacttttcgaagaaagattaggatctattctggcaaaagctcttaagctttccgcgaaatagttttaactattcatcgaaatggttctaagtactctgtgaaaagcttacaagcttttcacagagtatttaatacttttgtgtctatacctcaagaagattgaggaataaaccaatgcagttccggcttttccgagaaagcttaaggtattcacttgcacaccacttcttattc Predict ORF larger than 30AA ================================================ Protein_Len: 32 Strand: + Start: 13 End: 108 ............ M K K T H Q K I R S D C T K S M R C R W T R I F S S T N N K N N ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 30 Strand: + Start: 95 End: 184 .............................................................................................. M T R T T K V Q R I P K V Q T K T F G V L F F A D V P C D N ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 42 Strand: + Start: 289 End: 414 ................................................................................................................................................................................................................................................................................................ M Y R G Q S C F C P D R T N I E I R I A F D R M L Q S A P E D G L Y H K A D G G I P ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 50 Strand: + Start: 272 End: 421 ............................................................................................................................................................................................................................................................................... M F R S G N C I G G N P A S A R I G P T L K F G L L L T E C C S P H R K M G Y T T R Q M A V F R R G .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 42 Strand: + Start: 421 End: 546 .................................................................................................................................................................................................................................................................................................................................................................................................................................... M T G Y P I R L F E L R C R A R R G T L Y S V A S R A V E F R S V S R R C G R A E P ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 580 End: 816 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M K S R R A Q L G T L Y G V A R V A V G R S S T P F R R M F R M A I K Q C G F D L K K I C N M L F V S V F H F S V E K F ....................................................................................................................................................................................................................................................................................................................... Protein_Len: 58 Strand: + Start: 716 End: 889 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M C C L S A Y F I S R L R N F S F E R L R H P M R R Q T F S L S F S D S I I V N I P T R E S R H H I A Y I E L T F D .............................................................................................................................................................................................................................................. Protein_Len: 34 Strand: + Start: 952 End: 1053 ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M V L T I H R N G S K Y S V K S L Q A F H R V F N T F V S I P Q E D .......................................................................... Protein_Len: 41 Strand: - Start: 1003 End: 1125 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... L S K V S Y K I S K H R Y R L F I S S Y V L A T G A K G L F S L T N V Q V G S R M .. Protein_Len: 39 Strand: - Start: 615 End: 731 ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... P T A R T A T P R L E V G K R R I N R I A I F C H P N S R F F I H L I S N T M ............................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 60 Strand: - Start: 571 End: 786 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... R E V A Y G S D S Y P T A R G G K P T H E S H S Y F L A S E I Q L F Y A I H Q K D A Y K M E R N L F K L K S L S R C G M ..................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 284 End: 529 ........................................................................................................................................................................................................................................................................................... Q G F T A T R V P L H A I G C P L H R Y E T S S L P S D W V A R R A V S Y L E A L Y A R C R L S G L R L T G S R S G Y M ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 38 Strand: - Start: 268 End: 381 ........................................................................................................................................................................................................................................................................... L N N R E P L Q I P P L G A E A R I P G V N F N P N S K V S H Q L G C R F M .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 59 Strand: - Start: 246 End: 422 ..................................................................................................................................................................................................................................................... V S L D Q S N Y T T G N L C N Y L P C D Q K Q G S R V L M S I R I A K S R I N C D A G S S P S Y W L A S P P I G Y L M ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 36 Strand: - Start: 111 End: 218 .............................................................................................................. L E S F G S L E S L F K R P K I K Q Q H G K R C N I L T L E A Y S F A M ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 45 Strand: - Start: 2 End: 136 . R K I H S S F G D F S G I R N Y L I W S T Y I S G F R K K S L Y C S C S F N L S D R F N M ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 32 Strand: - Start: 1 End: 96 G S S T H L F G M L L D S G I T C F G H P T S P G S D K R R C M ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... gccgcttgatgtgtgaagaaaacccatcaaaagatccgatccgattgtacaaaatccatgaggtgtagatggacccgaatcttttcttcgacaaataacaagaacaactaaagttcagagaatcccgaaagttcagacaaaaactttcggggttttattttttgctgatgtcccttgcgacaattgattaacgtcagttcggcgtaagaaaacgccaatgtattcgttccccgattagcgggttacacactaagatcttgggagttataggttgttccgttcaggcaattgtatagggggcaatcctgcttctgcccggatcggaccaacattgaaattcggattgcttttgaccgaatgttgcagtccgcaccggaagatgggctataccacaaggcagatggcggtattccgtagaggataacgggctatcccatacggctcttcgagctacgctgtagagctcggcgaggtacgctctacagcgtagcgagccgagccgtagagttccgctccgtgagccgtagatgtggccgagctgagccgtagggcccggcgcggtgagccctacagcgtagcttgaagagccgtagagcgcagctcggtacgctctacggcgtagcccgagtcgctgtagggcgtagctcgaccccctttcggcgtatgttccgaatggctataaaacaatgcggattcgatctgaagaaaatatgcaatatgctgtttgtcagcgtatttcatttctcggttgagaaatttcagcttcgagaggcttcgacatccgatgagacgtcaaactttttccctttcattttctgattcgattatagtcaatatcccaacaagagagagtcggcaccatatcgcttacatcgaactcacgtttgattagccacttttcgaagaaagattaggatctattctggcaaaagctcttaagctttccgcgaaatagttttaactattcatcgaaatggttctaagtactctgtgaaaagcttacaagcttttcacagagtatttaatacttttgtgtctatacctcaagaagattgaggaataaaccaatgcagttccggcttttccgagaaagcttaaggtattcacttgcacaccacttcttattc Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ gccgcttgatgtgtgaagaaaacccatcaaaagatccgatccgattgtacaaaatccatgaggtgtagatggacccgaatcttttcttcgacaaataacaagaacaactaaagttcagagaatcccgaaagttcagacaaaaactttcggggttttattttttgctgatgtcccttgcgacaattgattaacgtcagttcggcgtaagaaaacgccaatgtattcgttccccgattagcgggttacacactaagatcttgggagttataggttgttccgttcaggcaattgtatagggggcaatcctgcttctgcccggatcggaccaacattgaaattcggattgcttttgaccgaatgttgcagtccgcaccggaagatgggctataccacaaggcagatggcggtattccgtagaggataacgggctatcccatacggctcttcgagctacgctgtagagctcggcgaggtacgctctacagcgtagcgagccgagccgtagagttccgctccgtgagccgtagatgtggccgagctgagccgtagggcccggcgcggtgagccctacagcgtagcttgaagagccgtagagcgcagctcggtacgctctacggcgtagcccgagtcgctgtagggcgtagctcgaccccctttcggcgtatgttccgaatggctataaaacaatgcggattcgatctgaagaaaatatgcaatatgctgtttgtcagcgtatttcatttctcggttgagaaatttcagcttcgagaggcttcgacatccgatgagacgtcaaactttttccctttcattttctgattcgattatagtcaatatcccaacaagagagagtcggcaccatatcgcttacatcgaactcacgtttgattagccacttttcgaagaaagattaggatctattctggcaaaagctcttaagctttccgcgaaatagttttaactattcatcgaaatggttctaagtactctgtgaaaagcttacaagcttttcacagagtatttaatacttttgtgtctatacctcaagaagattgaggaataaaccaatgcagttccggcttttccgagaaagcttaaggtattcacttgcacaccacttcttattc Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 63 HP_score: -7.2 Tail_Score: -3.5365 Start: 123 End: 152 Full_Region: cagcaaaaaataaaa ccccgaaagttt ttgtct gaactttcggga ttctctgaactttag ..........................................................................................................................ccccgaaagtttttgtctgaactttcggga............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 100 HP_score: -8.7 Tail_Score: -5.45813 Start: 123 End: 152 Full_Region: CTAAAGTTCAGAGAA TCCCGAAAGTT CAGACAAA AACTTTCGGGG TTTTATTTTTTGCTG ..........................................................................................................................TCCCGAAAGTTCAGACAAAAACTTTCGGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 71 HP_score: -10.7 Tail_Score: -2.71708 Start: 124 End: 151 Full_Region: agcaaaaaataaaac cccgaaagttt ttgtct gaactttcggg attctctgaacttta ...........................................................................................................................cccgaaagtttttgtctgaactttcggg................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ TransTerm Strand: + Conf: 80 HP_score: -10.0 Tail_Score: -3.85047 Start: 124 End: 151 Full_Region: TAAAGTTCAGAGAAT CCCGAAAGTT CAGACAAA AACTTTCGGG GTTTTATTTTTTGCT ...........................................................................................................................CCCGAAAGTTCAGACAAAAACTTTCGGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ TransTerm Strand: + Conf: 44 HP_score: -4.4 Tail_Score: -2.52464 Start: 542 End: 575 Full_Region: GATGTGGCCGAGCTG AGCCGTAGGGCCCG GCGCGG TGAGCCCTACAGCG TAGCTTGAAGAGCCG .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCGTAGGGCCCGGCGCGGTGAGCCCTACAGCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ TransTerm Strand: - Conf: 100 HP_score: -16.7 Tail_Score: -3.04263 Start: 587 End: 618 Full_Region: agcgactcgggctac gccgtagagcgta ccgagc tgcgctctacggc tcttcaagctacgct ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gccgtagagcgtaccgagctgcgctctacggc............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: - Conf: 63 HP_score: -2.0 Tail_Score: -4.65916 Start: 710 End: 742 Full_Region: atttctcaaccgaga aatgaaatacgctg acaaa cagcatattgcata ttttcttcagatcga .....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................aatgaaatacgctgacaaacagcatattgcata................................................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: + Conf: 68 HP_score: -6.8 Tail_Score: -3.97368 Start: 712 End: 740 Full_Region: GATCTGAAGAAAATA TGCAATATGCTG TTTGT CAGCGTATTTCA TTTCTCGGTTGAGAA .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAATATGCTGTTTGTCAGCGTATTTCA................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 58 HP_score: -4.6 Tail_Score: -3.94438 Start: 712 End: 740 Full_Region: ttctcaaccgagaaa tgaaatacgctg acaaa cagcatattgca tattttcttcagatc .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tgaaatacgctgacaaacagcatattgca................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 86 HP_score: -11.4 Tail_Score: -3.67564 Start: 975 End: 1030 Full_Region: gaggtatagacacaa aagtattaaatactctgtgaaaagct tgta agcttttcacagagtacttagaacca tttcgatgaatagtt ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................aagtattaaatactctgtgaaaagcttgtaagcttttcacagagtacttagaacca................................................................................................. TransTerm Strand: - Conf: 87 HP_score: -14.9 Tail_Score: -2.80056 Start: 976 End: 1029 Full_Region: aggtatagacacaaa agtattaaatactctgtgaaaagct tgta agcttttcacagagtacttagaacc atttcgatgaatagt ...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................agtattaaatactctgtgaaaagcttgtaagcttttcacagagtacttagaacc.................................................................................................. TransTerm Strand: + Conf: 100 HP_score: -18.4 Tail_Score: -4.64844 Start: 977 End: 1028 Full_Region: CTATTCATCGAAATG GTTCTAAGTACTCTGTGAAAAGCT TACA AGCTTTTCACAGAGTATTTAATAC TTTTGTGTCTATACC ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTAAGTACTCTGTGAAAAGCTTACAAGCTTTTCACAGAGTATTTAATAC................................................................................................... TransTerm Strand: + Conf: 100 HP_score: -22.2 Tail_Score: -2.53846 Start: 981 End: 1024 Full_Region: TCATCGAAATGGTTC TAAGTACTCTGTGAAAAGCT TACA AGCTTTTCACAGAGTATTTA ATACTTTTGTGTCTA ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGTACTCTGTGAAAAGCTTACAAGCTTTTCACAGAGTATTTA....................................................................................................... TransTerm Strand: + Conf: 100 HP_score: -20.8 Tail_Score: -3.94664 Start: 985 End: 1020 Full_Region: CGAAATGGTTCTAAG TACTCTGTGAAAAGCT TACA AGCTTTTCACAGAGTA TTTAATACTTTTGTG ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTCTGTGAAAAGCTTACAAGCTTTTCACAGAGTA........................................................................................................... TransTerm Strand: - Conf: 100 HP_score: -19.0 Tail_Score: -2.7186 Start: 987 End: 1018 Full_Region: caaaagtattaaata ctctgtgaaaagct tgta agcttttcacagag tacttagaaccattt ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ctctgtgaaaagcttgtaagcttttcacagag............................................................................................................. Find igs database================================================ Query_seq: PG0890:PG0893|PG0890:PG0893:alkaline phosphatase, putative:hydroxylamine reductase:-><-:953164..954290 1127 gccgcttgatgtgtgaagaaaacccatcaaaagatccgatccgattgtacaaaatccatgaggtgtagatggacccgaatcttttcttcgacaaataacaagaacaactaaagttcagagaatcccgaaagttcagacaaaaactttcggggttttattttttgctgatgtcccttgcgacaattgattaacgtcagttcggcgtaagaaaacgccaatgtattcgttccccgattagcgggttacacactaagatcttgggagttataggttgttccgttcaggcaattgtatagggggcaatcctgcttctgcccggatcggaccaacattgaaattcggattgcttttgaccgaatgttgcagtccgcaccggaagatgggctataccacaaggcagatggcggtattccgtagaggataacgggctatcccatacggctcttcgagctacgctgtagagctcggcgaggtacgctctacagcgtagcgagccgagccgtagagttccgctccgtgagccgtagatgtggccgagctgagccgtagggcccggcgcggtgagccctacagcgtagcttgaagagccgtagagcgcagctcggtacgctctacggcgtagcccgagtcgctgtagggcgtagctcgaccccctttcggcgtatgttccgaatggctataaaacaatgcggattcgatctgaagaaaatatgcaatatgctgtttgtcagcgtatttcatttctcggttgagaaatttcagcttcgagaggcttcgacatccgatgagacgtcaaactttttccctttcattttctgattcgattatagtcaatatcccaacaagagagagtcggcaccatatcgcttacatcgaactcacgtttgattagccacttttcgaagaaagattaggatctattctggcaaaagctcttaagctttccgcgaaatagttttaactattcatcgaaatggttctaagtactctgtgaaaagcttacaagcttttcacagagtatttaatacttttgtgtctatacctcaagaagattgaggaataaaccaatgcagttccggcttttccgagaaagcttaaggtattcacttgcacaccacttcttattc Intra-Species Hit: Count: 7 Min: 1 Max: 1127 Len: 1127 Subject: NC_002950_PG0890_PG0893|alkaline phosphatase, putative:hydroxylamine reductase|POSITIVE:NEGATIVE|[953164,954290]|1127 HSP 1 e-value: 0.0 bit: 2234.0 Len: 1127 Query Start:1 Query End:1127 Subject Strand: POSITIVE Subject Start: 1 Subject End: 1127 gccgcttgatgtgtgaagaaaacccatcaaaagatccgatccgattgtacaaaatccatgaggtgtagatggacccgaatcttttcttcgacaaataacaagaacaactaaagttcagagaatcccgaaagttcagacaaaaactttcggggttttattttttgctgatgtcccttgcgacaattgattaacgtcagttcggcgtaagaaaacgccaatgtattcgttccccgattagcgggttacacactaagatcttgggagttataggttgttccgttcaggcaattgtatagggggcaatcctgcttctgcccggatcggaccaacattgaaattcggattgcttttgaccgaatgttgcagtccgcaccggaagatgggctataccacaaggcagatggcggtattccgtagaggataacgggctatcccatacggctcttcgagctacgctgtagagctcggcgaggtacgctctacagcgtagcgagccgagccgtagagttccgctccgtgagccgtagatgtggccgagctgagccgtagggcccggcgcggtgagccctacagcgtagcttgaagagccgtagagcgcagctcggtacgctctacggcgtagcccgagtcgctgtagggcgtagctcgaccccctttcggcgtatgttccgaatggctataaaacaatgcggattcgatctgaagaaaatatgcaatatgctgtttgtcagcgtatttcatttctcggttgagaaatttcagcttcgagaggcttcgacatccgatgagacgtcaaactttttccctttcattttctgattcgattatagtcaatatcccaacaagagagagtcggcaccatatcgcttacatcgaactcacgtttgattagccacttttcgaagaaagattaggatctattctggcaaaagctcttaagctttccgcgaaatagttttaactattcatcgaaatggttctaagtactctgtgaaaagcttacaagcttttcacagagtatttaatacttttgtgtctatacctcaagaagattgaggaataaaccaatgcagttccggcttttccgagaaagcttaaggtattcacttgcacaccacttcttattc gccgcttgatgtgtgaagaaaacccatcaaaagatccgatccgattgtacaaaatccatgaggtgtagatggacccgaatcttttcttcgacaaataacaagaacaactaaagttcagagaatcccgaaagttcagacaaaaactttcggggttttattttttgctgatgtcccttgcgacaattgattaacgtcagttcggcgtaagaaaacgccaatgtattcgttccccgattagcgggttacacactaagatcttgggagttataggttgttccgttcaggcaattgtatagggggcaatcctgcttctgcccggatcggaccaacattgaaattcggattgcttttgaccgaatgttgcagtccgcaccggaagatgggctataccacaaggcagatggcggtattccgtagaggataacgggctatcccatacggctcttcgagctacgctgtagagctcggcgaggtacgctctacagcgtagcgagccgagccgtagagttccgctccgtgagccgtagatgtggccgagctgagccgtagggcccggcgcggtgagccctacagcgtagcttgaagagccgtagagcgcagctcggtacgctctacggcgtagcccgagtcgctgtagggcgtagctcgaccccctttcggcgtatgttccgaatggctataaaacaatgcggattcgatctgaagaaaatatgcaatatgctgtttgtcagcgtatttcatttctcggttgagaaatttcagcttcgagaggcttcgacatccgatgagacgtcaaactttttccctttcattttctgattcgattatagtcaatatcccaacaagagagagtcggcaccatatcgcttacatcgaactcacgtttgattagccacttttcgaagaaagattaggatctattctggcaaaagctcttaagctttccgcgaaatagttttaactattcatcgaaatggttctaagtactctgtgaaaagcttacaagcttttcacagagtatttaatacttttgtgtctatacctcaagaagattgaggaataaaccaatgcagttccggcttttccgagaaagcttaaggtattcacttgcacaccacttcttattc HSP 2 e-value: 3.0E-6 bit: 56.0 Len: 36 Query Start:985 Query End:1020 Subject Strand: NEGATIVE Subject Start: 985 Subject End: 1020 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tactctgtgaaaagcttacaagcttttcacagagta........................................................................................................... ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tactctgtgaaaagcttgtaagcttttcacagagta........................................................................................................... Subject: NC_002950_PG1190_PG1195|glycerate dehydrogenase:8-amino-7-oxononanoate synthase|POSITIVE:POSITIVE|[1273206,1274118]|913 HSP 1 e-value: 0.0 bit: 969.0 Len: 661 Query Start:188 Query End:848 Subject Strand: NEGATIVE Subject Start: 139 Subject End: 798 ...........................................................................................................................................................................................ttaacgtcagttcggcgtaagaaaacgccaatgtattcgttccccgattagcgggttacacactaagatcttgggagttataggttgttccgttcaggcaattgtatagggggcaatcctgcttctgcccggatcggaccaacattgaaattcggattgcttttgaccgaatgttgcagtccgcaccggaagatgggctataccacaaggcagatggcggtattccgtagaggataacgggctatcccatacggctcttcgagctacgctgtagagctcggcgaggtacgctctacagcgtagcgagccgagccgtagagttccgctccgtgagccgtagatgtggccgagctgagccgtagggcccggcgcggtgagccctacagcgtagcttgaagagccgtagagcgcagctcggtacgctctacggcgtagcccgagtcgctgtagggcgtagctcgaccccctttcggcgtatgttccgaatggctataaaacaatgcggattcgatctgaagaaaatatgcaatatgctgtttgtcagcgtatttcatttctcggttgagaaatttcagcttcgagaggcttcgacatccgatgagacgtcaaactttttccctttcattttctgattcgattatagtcaatatcccaacaagag....................................................................................................................................................................................................................................................................................... ...........................................................................................................................................................................................ttaacgtcagttcggcgtaagaaaacgccaatgtattcgttccaagattagcggttaacgcactaatattttggaagttataggttgttctgttcaggcaattgtatagggggcaatcctgcttctgcctggatcgaaccaacattgaaattcggattgcttttgaccgaatgttgcagtccgtatagggagatgggctataccacagggcagatggcggtactccgtagaggatgacgagctatcccgtacggctcttcgagctacgctgtagagctcggcgaggtacgccctacagcgtagcgagccgagccgtagagttccgctccgtgagccgtagaggtggccgagctgagccgtagggcccggcgcggtgagccctacagcgtagctcgaagagccgtagagcgcagctcggtacgctctacggcgtagcccgagtcgctgtagggcgtagctcgaccccccttcggcatatgttccgaacggctataaaacaatgcggattcaatccaggaaaaatatgcaatatgctgtttatcagcatatttcatttctcagttgaaagatttcagcttcgagaggcttcgacatccgatgagacttcaaactttttccctttcattttctga-tcggttatagtcaatgccccaacaagag....................................................................................................................................................................................................................................................................................... Subject: NC_002950_PG1297_PG1300|ribosomal protein S1:hypothetical protein|POSITIVE:NEGATIVE|[1377771,1378619]|849 HSP 1 e-value: 0.0 bit: 892.0 Len: 612 Query Start:187 Query End:798 Subject Strand: POSITIVE Subject Start: 122 Subject End: 735 ..........................................................................................................................................................................................attaacgtcagttcggcgtaagaaaacgccaatgtattcgttccccgattagcgggttacacactaagatcttgggagttataggttgttccgttcaggcaattgtatagggggcaatcctgcttctgcccggatcggaccaacattgaaattcggattgcttttgaccgaatgttgcagtccgcaccggaagatgggctataccacaaggca-gatggcggtattccgtagaggataacgggctatcccatacggctcttcgagctacgctgtagagctcggcgaggtacgctctacagcgtagcgagccgagccgtagagttccgctccgtgagccgtagatgtggccgagctgagccgtagggcccggcgcggtgagccctacagcgtagcttgaagagccgtagagcgcagctcggtacgctctacggcgtagcccgagtcgctgtagggcgtagctcgaccccctttcggcgtatgttccgaatggctataaaacaatgcggattcgatctgaag-aaaatatgcaatatgctgtttgtcagcgtatttcatttctcggttgagaaatttcagcttcgagaggcttcgacatccgatgagacgtcaaac......................................................................................................................................................................................................................................................................................................................................... ..........................................................................................................................................................................................attaacgtcagttcggcgtaagaaaacgccaatgtattcgttccctgattagcggtttacacactaagatcttgggagttataggttgttccgttcaggcaattgtatagggggcaatcctgcttttgcttggatcgaaccaacattgaaattcggattgcttttgaccgaatgttgcagtccgtacagggagatgggctataccacagggcaagatggcggtactccatagaggataacgggctatcccgtacagctcttcgagctacgctgtagagcccggcgcggtgagccctacagcgtagcgagccgagccgtagagttccgctccgggagccgtagaggtggccgagctgagccgtagagcccggcgcagcgagccctacagcgtagctcgaagagccgtagagcgcagctcggtacgctctacggcgtagcccgagtcgctgtagggcgtagctcgaccccccttcggagtatattccgaacggctataaaacaatgaggattcgatctgaagaaaaacatgcaatatgctgtttgtcagcgtatttcacttctcagttcaaagatttcagcttcgagaggctccgacatccgatgagacgtcaaac......................................................................................................................................................................................................................................................................................................................................... Subject: NC_002950_PG1881_PG1884|hypothetical protein:alpha-L-fucosidase precursor, putative|POSITIVE:NEGATIVE|[1978107,1979057]|951 HSP 1 e-value: 0.0 bit: 688.0 Len: 516 Query Start:305 Query End:820 Subject Strand: POSITIVE Subject Start: 302 Subject End: 819 ................................................................................................................................................................................................................................................................................................................cctgcttctgcccggatcggaccaacattgaaattcggattgctttt--gaccgaatgttgcagtccgcaccggaagatgggctataccacaaggcagatggcggtattccgtagaggataacgggctatcccatacggctcttcgagctacgctgtagagctcggcgaggtacgctctacagcgtagcgagccgagccgtagagttccgctccgtgagccgtagatgtggccgagctgagccgtagggcccggcgcggtgagccctacagcgtagcttgaagagccgtagagcgcagctcggtacgctctacggcgtagcccgagtcgctgtagggcgtagctcgaccccctttcggcgtatgttccgaatggctataaaacaatgcggattcgatctgaagaaaatatgcaatatgctgtttgtcagcgtatttcatttctcggttgagaaatttcagcttcgagaggcttcgacatccgatgagacgtcaaactttttccctttcattttctgat................................................................................................................................................................................................................................................................................................................... ................................................................................................................................................................................................................................................................................................................cctgcttctgcttggatcgaaccaacattgaaattcggattgcttttttgaccgaatgttacagtccgtacagaaagatgggctataccatagggcacatggaggtactccgtaggggatgacgagctatcccgtacagctcttcgagctacgctgtagagctcagcgaggtacgccctacagcgtagcgagccgagccgtagagttccgctccgggagctgtagaggtggccgagccgagccctagagcccggcgcgccgagccctacagcgtagctcgaagagccgtagagcgcagctcggtacgctctacggcgtagcccgagtcgctgtagggcgtagctcgaccccctttcggagtatgttccgaacggctataaaacaatgcggattcgatccaagaaaaacatgcaatatgctgtttgtcaacgtatttcatttctcggttgagagatttcagcttcgggagacttcgacatccgatgagacgtcaaattttttccctttcattttctgat................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 2.0E-7 bit: 60.0 Len: 34 Query Start:437 Query End:470 Subject Strand: NEGATIVE Subject Start: 558 Subject End: 591 ....................................................................................................................................................................................................................................................................................................................................................................................................................................................tacggctcttcgagctacgctgtagagctcggcg................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ....................................................................................................................................................................................................................................................................................................................................................................................................................................................tacggctcttcgagctacgctgtagggctcggcg................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. HSP 3 e-value: 2.0E-7 bit: 60.0 Len: 38 Query Start:848 Query End:885 Subject Strand: POSITIVE Subject Start: 864 Subject End: 901 ...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gagagtcggcaccatatcgcttacatcgaactcacgtt.................................................................................................................................................................................................................................................. ...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gagagtcggcaccataacgcttatatcgaactcacgtt.................................................................................................................................................................................................................................................. HSP 4 e-value: 3.0E-6 bit: 56.0 Len: 32 Query Start:189 Query End:220 Subject Strand: POSITIVE Subject Start: 211 Subject End: 242 ............................................................................................................................................................................................taacgtcagttcggcgtaagaaaacgccaatg........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ............................................................................................................................................................................................taacgtcagttcgacgtaagaaaacgccaatg........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: NC_002950_PG0237_PG0240|uracil-DNA glycosylase:hydrolase, haloacid dehalogenase-like family|POSITIVE:NEGATIVE|[275587,276484]|898 HSP 1 e-value: 1.0E-171 bit: 603.0 Len: 353 Query Start:197 Query End:549 Subject Strand: POSITIVE Subject Start: 102 Subject End: 456 ....................................................................................................................................................................................................gttcggcgtaagaaaacgccaatgtattcgttccccgattagcgggttacacactaagatcttgggagttataggttgttccgttcaggcaattgtatagggggcaatcctgcttctgcccggatcggaccaacattgaaattcggattgctttt--gaccgaatgttgcagtccgcaccggaagatgggctataccacaaggcagatggcggtattccgtagaggataacgggctatcccatacggctcttcgagctacgctgtagagctcggcgaggtacgctctacagcgtagcgagccgagccgtagagttccgctccgtgagccgtagatgtggccgagctgagccgtag.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ....................................................................................................................................................................................................gttcggcgtaagaaaacgccaatgtattcgttccccgattagcgggttacacactaagatcttgggagttataggttattccgttcaggcaattgtatagggggcaatcctgcttctgcccggatcgaaccaacattgaaattcggattgcttttttgaccgaatgttgcagtccgtacaggaagatgggctataccacaaggcagatggcggtacaccgtagaggataacgggctatcccgtacagctcttcgagctacgctgtagagctcggcgaggtacgctctacagcgtagcgagccgagccgtagagttccgctccgggagccgtagaggtggccgagctgagccgtag.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. HSP 2 e-value: 1.0E-133 bit: 476.0 Len: 264 Query Start:585 Query End:848 Subject Strand: POSITIVE Subject Start: 448 Subject End: 711 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gagccgtagagcgcagctcggtacgctctacggcgtagcccgagtcgctgtagggcgtagctcgaccccctttcggcgtatgttccgaatggctataaaacaatgcggattcgatctgaagaaaatatgcaatatgctgtttgtcagcgtatttcatttctcggttgagaaatttcagcttcgagaggcttcgacatccgatgagacgtcaaactttttccctttcattttctgattcgattatagtcaatatcccaacaagag....................................................................................................................................................................................................................................................................................... ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gagccgtagagcgcagctcggtacgctctacggcgtagcccgagtcgctgtagggcgtagctcgaccccctttcggcgtatgttccgaatggctataaaacaatgcggattcgatctgaagaaaatatgcaatatcctgtttgtcagcgtatttcatttctcggttgagagatttcagcttcgagaggcttcgacatccaatgagacgtcaaactttttccctttcattttctgattcggttatagtcaatgccccaacaagag....................................................................................................................................................................................................................................................................................... Subject: NC_002950_PG1837_PG1840|hemagglutinin protein HagA:hypothetical protein|POSITIVE:POSITIVE|[1936795,1937241]|447 HSP 1 e-value: 1.0E-142 bit: 507.0 Len: 316 Query Start:375 Query End:690 Subject Strand: NEGATIVE Subject Start: 107 Subject End: 422 ......................................................................................................................................................................................................................................................................................................................................................................................ggaagatgggctataccacaaggcagatggcggtattccgtagaggataacgggctatcccatacggctcttcgagctacgctgtagagctcggcgaggtacgctctacagcgtagcgagccgagccgtagagttccgctccgtgagccgtagatgtggccgagctgagccgtagggcccggcgcggtgagccctacagcgtagcttgaagagccgtagagcgcagctcggtacgctctacggcgtagcccgagtcgctgtagggcgtagctcgaccccctttcggcgtatgttccgaatggctataaaacaatgc..................................................................................................................................................................................................................................................................................................................................................................................................................................................... ......................................................................................................................................................................................................................................................................................................................................................................................ggaagatgggctataccacagggcagatggtggtactccgtagaggataacgggctatcccgtacggctcttcgagctacgctgtagagctcagcgaggtacgctctacagcgtagcgagccgagccgtagagttccgctccgggagccgtagaggtggccgagctgagccgtagagcttggcgcggtgagccctacagcgtagctcgaagagccgtagagcgcagctcggtacgctctacggcgtagcccgagtcgctgtagggcgtagctcgacccccttccggagtatattccgaacggctataaaacaatgc..................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: NC_002950_PG1954_PG1956|NAD dependent epimerase/reductase-related protein:4-hydroxybutyrate CoA-transferase|POSITIVE:NEGATIVE|[2045673,2046304]|632 HSP 1 e-value: 1.0E-134 bit: 480.0 Len: 318 Query Start:568 Query End:885 Subject Strand: POSITIVE Subject Start: 237 Subject End: 554 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ctacagcgtagcttgaagagccgtagagcgcagctcggtacgctctacggcgtagcccgagtcgctgtagggcgtagctcgaccccctttcggcgtatgttccgaatggctataaaacaatgcggattcgatctgaagaaaatatgcaatatgctgtttgtcagcgtatttcatttctcggttgagaaatttcagcttcgagaggcttcgacatccgatgagacgtcaaactttttccctttcattttctgattcgattatagtcaatatcccaacaagagagagtcggcaccatatcgcttacatcgaactcacgtt.................................................................................................................................................................................................................................................. .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ctacagcgtagctcgaagagccgtagagcgcagctcggtacgctctacggcgtagcccgagtcgctgtagggcgtagctcgaccccctttcggcgtatgttccgaacggctataaaacaatgcggattcgatccaagaaaaacatgcaatatgctgtttgtcaatgtatttcatttgtctgttgagaggtttcagcttcgagaggctccgacgtccgatgagacgtcaaactttttccctttcattttctgattcggttatagtcaatatcccatcaagagagaatcggcaccatatcgcttacattgaactcacgtt.................................................................................................................................................................................................................................................. HSP 2 e-value: 2.0E-41 bit: 172.0 Len: 135 Query Start:357 Query End:491 Subject Strand: POSITIVE Subject Start: 114 Subject End: 248 ....................................................................................................................................................................................................................................................................................................................................................................aatgttgcagtccgcaccggaagatgggctataccacaaggcagatggcggtattccgtagaggataacgggctatcccatacggctcttcgagctacgctgtagagctcggcgaggtacgctctacagcgtagc............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ ....................................................................................................................................................................................................................................................................................................................................................................aatgttacagtccgtacagaaagatgggctataccatagggcagatggcggtacaccatagaggatgacgagctatcccgtacggctcttcgagctacgctgtagagctcggcgaggtacgctctacagcgtagc............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ HSP 3 e-value: 3.0E-6 bit: 56.0 Len: 28 Query Start:437 Query End:464 Subject Strand: NEGATIVE Subject Start: 234 Subject End: 261 ....................................................................................................................................................................................................................................................................................................................................................................................................................................................tacggctcttcgagctacgctgtagagc....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ....................................................................................................................................................................................................................................................................................................................................................................................................................................................tacggctcttcgagctacgctgtagagc....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ GCCGCUUGAUGUGUGAAGAAAACCCAUCAAAAGAUCCGAUCCGAUUGUACAAAAUCCAUGAGGUGUAGAUGGACCCGAAUCUUUUCUUCGACAAAUAACAAGAACAACUAAAGUUCAGAGAAUCCCGAAAGUUCAGACAAAAACUUUCGGGGUUUUAUUUUUUGCUGAUGUCCCUUGCGACAAUUGAUUAACGUCAGUUCGGCGUAAGAAAACGCCAAUGUAUUCGUUCCCCGAUUAGCGGGUUACACACUAAGAUCUUGGGAGUUAUAGGUUGUUCCGUUCAGGCAAUUGUAUAGGGGGCAAUCCUGCUUCUGCCCGGAUCGGACCAACAUUGAAAUUCGGAUUGCUUUUGACCGAAUGUUGCAGUCCGCACCGGAAGAUGGGCUAUACCACAAGGCAGAUGGCGGUAUUCCGUAGAGGAUAACGGGCUAUCCCAUACGGCUCUUCGAGCUACGCUGUAGAGCUCGGCGAGGUACGCUCUACAGCGUAGCGAGCCGAGCCGUAGAGUUCCGCUCCGUGAGCCGUAGAUGUGGCCGAGCUGAGCCGUAGGGCCCGGCGCGGUGAGCCCUACAGCGUAGCUUGAAGAGCCGUAGAGCGCAGCUCGGUACGCUCUACGGCGUAGCCCGAGUCGCUGUAGGGCGUAGCUCGACCCCCUUUCGGCGUAUGUUCCGAAUGGCUAUAAAACAAUGCGGAUUCGAUCUGAAGAAAAUAUGCAAUAUGCUGUUUGUCAGCGUAUUUCAUUUCUCGGUUGAGAAAUUUCAGCUUCGAGAGGCUUCGACAUCCGAUGAGACGUCAAACUUUUUCCCUUUCAUUUUCUGAUUCGAUUAUAGUCAAUAUCCCAACAAGAGAGAGUCGGCACCAUAUCGCUUACAUCGAACUCACGUUUGAUUAGCCACUUUUCGAAGAAAGAUUAGGAUCUAUUCUGGCAAAAGCUCUUAAGCUUUCCGCGAAAUAGUUUUAACUAUUCAUCGAAAUGGUUCUAAGUACUCUGUGAAAAGCUUACAAGCUUUUCACAGAGUAUUUAAUACUUUUGUGUCUAUACCUCAAGAAGAUUGAGGAAUAAACCAAUGCAGUUCCGGCUUUUCCGAGAAAGCUUAAGGUAUUCACUUGCACACCACUUCUUAUUC (((..((((((.((.......)).)))))).((((((..((((..(.((((...((...))..)))).)))))....(((((((.((((((..........((((.......))))..(((((((((((((((........)))))))))))))))......(((((((.((.((((.....((((((((.((((((...(((((......))))).........((..((((.....))))..)).......((....(((((....(((((...((((((.((((..(((..((((((..(((((...(((((((((..(((((((((((......((((.((......))))))))))))..)))))..))).....(((......)))...))))))..((((....))))..)))))..(((((((((((.(((((((((((((((((((((((((.(((((.((.(.((((((....)))))).)..((((.(((.((..((((.((((...(.((((......))))))))).))))..)).))).)))).)).))))).))))))))))))))))))))))))).((((..((((((((((((....))))))..))))))))))...))).)))))))).))))))....)))..))))..))))))........((...(((((((((............(((.(((((((((.....))))))))).)))((((((((((((....))))))..))))))...)))).))))).))........))))).)))))..)).....))))..))....)))))))).......)))).))..))))))).......(((...(((((((....))))))).)))......))))))))))))).)))))).....)))....((.(((((((((((((.((((.((((..((((............(((..((((((((((((((((((((....))))))))))))))))))))..))).(((.((.(((.((((((.....)))))).))).)))))...))))..)))))))))).))))))))))))).......................... (-416.60) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ GAAUAAGAAGUGGUGUGCAAGUGAAUACCUUAAGCUUUCUCGGAAAAGCCGGAACUGCAUUGGUUUAUUCCUCAAUCUUCUUGAGGUAUAGACACAAAAGUAUUAAAUACUCUGUGAAAAGCUUGUAAGCUUUUCACAGAGUACUUAGAACCAUUUCGAUGAAUAGUUAAAACUAUUUCGCGGAAAGCUUAAGAGCUUUUGCCAGAAUAGAUCCUAAUCUUUCUUCGAAAAGUGGCUAAUCAAACGUGAGUUCGAUGUAAGCGAUAUGGUGCCGACUCUCUCUUGUUGGGAUAUUGACUAUAAUCGAAUCAGAAAAUGAAAGGGAAAAAGUUUGACGUCUCAUCGGAUGUCGAAGCCUCUCGAAGCUGAAAUUUCUCAACCGAGAAAUGAAAUACGCUGACAAACAGCAUAUUGCAUAUUUUCUUCAGAUCGAAUCCGCAUUGUUUUAUAGCCAUUCGGAACAUACGCCGAAAGGGGGUCGAGCUACGCCCUACAGCGACUCGGGCUACGCCGUAGAGCGUACCGAGCUGCGCUCUACGGCUCUUCAAGCUACGCUGUAGGGCUCACCGCGCCGGGCCCUACGGCUCAGCUCGGCCACAUCUACGGCUCACGGAGCGGAACUCUACGGCUCGGCUCGCUACGCUGUAGAGCGUACCUCGCCGAGCUCUACAGCGUAGCUCGAAGAGCCGUAUGGGAUAGCCCGUUAUCCUCUACGGAAUACCGCCAUCUGCCUUGUGGUAUAGCCCAUCUUCCGGUGCGGACUGCAACAUUCGGUCAAAAGCAAUCCGAAUUUCAAUGUUGGUCCGAUCCGGGCAGAAGCAGGAUUGCCCCCUAUACAAUUGCCUGAACGGAACAACCUAUAACUCCCAAGAUCUUAGUGUGUAACCCGCUAAUCGGGGAACGAAUACAUUGGCGUUUUCUUACGCCGAACUGACGUUAAUCAAUUGUCGCAAGGGACAUCAGCAAAAAAUAAAACCCCGAAAGUUUUUGUCUGAACUUUCGGGAUUCUCUGAACUUUAGUUGUUCUUGUUAUUUGUCGAAGAAAAGAUUCGGGUCCAUCUACACCUCAUGGAUUUUGUACAAUCGGAUCGGAUCUUUUGAUGGGUUUUCUUCACACAUCAAGCGGC ......(...((((((....(((((...(((((((((((((((((.((....((((((((((((((((.((((((.....)))))).))))))......((.((((.((((((((((((((((....)))))))))))))))).)))).)).....)))))..)))))....)).))))).)))))))))))).(((((((((.((((.(((((.........(((((...(((((((...((((.(((.((((((...((((((((....(((((........))))).)))))).))...)))))))))...((((...(((......((((((((((....)))))))))).....((((..(((((..(((((....)))))(((.((((.((((.....)))).)))).)))......))))).)))).))).))))))))..)))))))))))).......((....)))))))..((...(((((((((((.....((((..(((((((((((((......)))))))))))))......)))).)))))))))))...((((((((((((....)))...(((..((((((.....(((.....(.((((..(((((((((((..(..(((((((((((((((............)))))))))))))))..)..)))))))).))).....((((........))))....)))))....))).))))))..))).......)))))))))...))...)))))).))))))).(((((....((((....((((((((((((((((((...(((((...((((..(((((((....((((..............((((..(((..(((((.......)))))))).)))).........(((((((......))))))).....))))...)))))))....))))...((.(((((.((((....(((((((((((......))))))))))).......((((.......)))).)))).))))).))............))))).......((....)).))))))....))))))))))))..)))))))))....)))))))))))..)... (-409.80) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 1063 489 441 231 183 NC_002950:PG1840|5end_hypothetical_protein_1937102..1937332_POSITIVE 529 559 515 54 4 NC_002950:PG1992|5end_glucose-inhibited_division_protein_A_2081410..2081640_POSITIVE 502 567 521 199 138 NC_002950:PG0607|5end_hypothetical_protein_662552..662782_POSITIVE 489 619 574 212 152 NC_002950:PG0854|5end_hypothetical_protein_914870..915100_POSITIVE 486 500 451 214 163 NC_002950:PG1269|5end_delta-1-pyrroline-5-carboxylate_dehydrogenase_1349201..1349431_NEGATIVE 480 560 511 104 38 NC_002950:PG1760|5end_ABC_transporter,_ATP-binding_protein_1846507..1846737_POSITIVE 479 579 531 64 13 NC_002950:PG1313|5end_dipeptidase-related_protein_1392282..1392512_POSITIVE 478 536 491 68 26 NC_002950:PG0676|5end_oxidoreductase,_short_chain_dehydrogenase/reductase_family_727275..727505_NEGATIVE 476 580 531 225 157 NC_002950:PG1968|5end_hypothetical_protein_2058564..2058794_NEGATIVE 471 566 524 71 17 NC_002950:PG2038|5end_N-acetylmuramoyl-L-alanine_amidase,_putative_2138207..2138437_NEGATIVE 471 660 615 208 147 NC_002950:PG0595|5end_30S_ribosomal_protein_S6_653008..653238_POSITIVE 468 560 512 194 147 NC_002950:PG2107|5end_thiamine_biosynthesis_protein_ThiH_2216658..2216888_NEGATIVE 462 580 531 48 7 NC_002950:PG1118|5end_clpB_protein_1194674..1194904_NEGATIVE 461 580 531 212 146 NC_002950:PG1185|5end_hypothetical_protein_1267752..1267982_NEGATIVE 460 575 532 54 5 NC_002950:PG1022|5end_hypothetical_protein_1083537..1083767_POSITIVE 460 576 531 219 165 NC_002950:PG0071|5end_UDP-3-O-acyl-GlcNAc_deacetylase/beta-hydroxyacyl-[acyl_carrier_protein]_dehydratase_FabZ_86119..86349_NEGATIVE 459 560 511 213 148 NC_002950:PG0344|5end_purple_acid_phosphatase_380012..380242_NEGATIVE 458 648 601 161 109 NC_002950:PG2087|5end_hypothetical_protein_2186990..2187220_POSITIVE 457 566 521 145 69 NC_002950:PG0458|5end_ISPg5,_transposase_Orf2_501463..501693_NEGATIVE 457 529 483 78 29 NC_002950:PG0146|5end_hypothetical_protein_169115..169345_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 737 886 848 88 50 NC_002950:PG1175|3end_ABC_transporter,_ATP-binding_protein,_putative_1254170..1254320_NEGATIVE 601 885 848 40 3 NC_002950:PG1884|3end_alpha-L-fucosidase_precursor,_putative_1978968..1979118_NEGATIVE 567 460 411 52 4 NC_002950:PG0261|3end_ISPg3,_transposase_293862..294012_NEGATIVE 486 500 451 137 86 NC_002950:PG1270|3end_hypothetical_protein_1349278..1349428_NEGATIVE 480 560 511 114 48 NC_002950:PG1759|3end_adhesion_protein,_putative_1846597..1846747_POSITIVE 471 660 615 111 50 NC_002950:PG0594|3end_RNA_polymerase_sigma-70_factor_652991..653141_POSITIVE 467 639 592 107 56 NC_002950:PG1012|3end_tRNA-i(6)A37_modification_enzyme_MiaB_1070089..1070239_NEGATIVE 457 566 521 91 15 NC_002950:PG0459|3end_ISPg5,_transposase_Orf1_501517..501667_NEGATIVE 457 529 483 65 16 NC_002950:PG0147|3end_hypothetical_protein_169128..169278_NEGATIVE 453 557 512 151 95 NC_002950:PG1663|3end_ABC_transporter,_ATP-binding_protein_1745868..1746018_POSITIVE 444 160 119 41 1 NC_002950:PG1677|3end_phosphoglycerate_kinase_1763678..1763828_POSITIVE 443 634 591 141 92 NC_002950:PG0569|3end_hypothetical_protein_624697..624847_NEGATIVE 436 556 511 148 107 NC_002950:PG0143|3end_hydrolase,_carbon-nitrogen_family_165747..165897_NEGATIVE 435 1090 1051 41 1 NC_002950:PG0896|3end_beta-galactosidase_960382..960532_POSITIVE 435 658 615 67 23 NC_002950:PG0138|3end_malonyl_CoA-acyl_carrier_protein_transacylase_161634..161784_POSITIVE 433 559 513 115 50 NC_002950:PG2206|3end_ABC_transporter,_ATP-binding_protein_2317250..2317400_NEGATIVE 433 560 512 102 37 NC_002950:PG0133|3end_hypothetical_protein_154259..154409_NEGATIVE 431 567 521 89 31 NC_002950:PG2188|3end_diaminopimelate_decarboxylase_2294633..2294783_NEGATIVE 431 567 521 150 101 NC_002950:PG1151|3end_alcohol_dehydrogenase,_iron-containing_1234378..1234528_POSITIVE 428 567 521 114 53 NC_002950:PG1972|3end_hemagglutinin_protein_HagB_2061203..2061353_POSITIVE