Origin IGS: aatgatgtctgattttatagttgtacaatctgattaaacgcccatcgctgtattgaactttccgagcttgttcgcaagctgctccatgtcatgctcaatcttcttgttggtgatacgagcatatatttgcgtagttttaatattcgtgtgaccgagcatcttactcacgctttccatcggtacacccttgctgagcgacatcgtcgcaaaggtgtgtcgggcaaggtggtaaatacaagcctaagcaagcgtaagaggaacataggtggaaatatggtaactggttgtgaattagttgtttttctatgttctgcgacagatagggataggcaaaacagtatgggatattgagacctttcagttaccaaaccgttatcctgttgtttcccgaacaaactgaggtaatgattattggaagaatttttctcatacggtttctttttatctgtttatcaatattttgcgtatcagagaacgctttgataacgggtaattttgcccataaagttaaagcgt .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 acgctttaactttatgggcaaaattacccgttatcaaagcgttctctgatacgcaaaatattgataaacagataaaaagaaaccgtatgagaaaaattcttccaataatcattacctcagtttgttcgggaaacaacaggataacggtttggtaactgaaaggtctcaatatcccatactgttttgcctatccctatctgtcgcagaacatagaaaaacaactaattcacaaccagttaccatatttccacctatgttcctcttacgcttgcttaggcttgtatttaccaccttgcccgacacacctttgcgacgatgtcgctcagcaagggtgtaccgatggaaagcgtgagtaagatgctcggtcacacgaatattaaaactacgcaaatatatgctcgtatcaccaacaagaagattgagcatgacatggagcagcttgcgaacaagctcggaaagttcaatacagcgatgggcgtttaatcagattgtacaactataaaatcagacatcatt Mask Tandem Repeat Region ================================================ aatgatgtctgattttatagttgtacaatctgattaaacgcccatcgctgtattgaactttccgagcttgttcgcaagctgctccatgtcatgctcaatcttcttgttggtgatacgagcatatatttgcgtagttttaatattcgtgtgaccgagcatcttactcacgctttccatcggtacacccttgctgagcgacatcgtcgcaaaggtgtgtcgggcaaggtggtaaatacaagcctaagcaagcgtaagaggaacataggtggaaatatggtaactggttgtgaattagttgtttttctatgttctgcgacagatagggataggcaaaacagtatgggatattgagacctttcagttaccaaaccgttatcctgttgtttcccgaacaaactgaggtaatgattattggaagaatttttctcatacggtttctttttatctgtttatcaatattttgcgtatcagagaacgctttgataacgggtaattttgcccataaagttaaagcgt Find is-nt database================================================ Query_seq: PG0816:PG0819|PG0816:PG0819:hypothetical protein:integrase:<-->:876950..877465 516 aatgatgtctgattttatagttgtacaatctgattaaacgcccatcgctgtattgaactttccgagcttgttcgcaagctgctccatgtcatgctcaatcttcttgttggtgatacgagcatatatttgcgtagttttaatattcgtgtgaccgagcatcttactcacgctttccatcggtacacccttgctgagcgacatcgtcgcaaaggtgtgtcgggcaaggtggtaaatacaagcctaagcaagcgtaagaggaacataggtggaaatatggtaactggttgtgaattagttgtttttctatgttctgcgacagatagggataggcaaaacagtatgggatattgagacctttcagttaccaaaccgttatcctgttgtttcccgaacaaactgaggtaatgattattggaagaatttttctcatacggtttctttttatctgtttatcaatattttgcgtatcagagaacgctttgataacgggtaattttgcccataaagttaaagcgt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PG0816:PG0819|PG0816:PG0819:hypothetical protein:integrase:<-->:876950..877465 516 aatgatgtctgattttatagttgtacaatctgattaaacgcccatcgctgtattgaactttccgagcttgttcgcaagctgctccatgtcatgctcaatcttcttgttggtgatacgagcatatatttgcgtagttttaatattcgtgtgaccgagcatcttactcacgctttccatcggtacacccttgctgagcgacatcgtcgcaaaggtgtgtcgggcaaggtggtaaatacaagcctaagcaagcgtaagaggaacataggtggaaatatggtaactggttgtgaattagttgtttttctatgttctgcgacagatagggataggcaaaacagtatgggatattgagacctttcagttaccaaaccgttatcctgttgtttcccgaacaaactgaggtaatgattattggaagaatttttctcatacggtttctttttatctgtttatcaatattttgcgtatcagagaacgctttgataacgggtaattttgcccataaagttaaagcgt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 35 Min: 58 Max: 336 Len: 279 Subject: gi|29347687|ref|NP_811190.1| transposase [Bacteroides thetaiotaomicron VPI-5482] HSP 1 e-value: 4.0E-17 bit: 84.3 Len: 168 Query Start:64 Query End:231 Subject Strand: null Subject Start: 351 Subject End: 407 ............................................................... Y H L A R H T F A T - M S L S K G V P M E S V S K M L G H T N I K T T Q I Y A R I T N K K I E H D M E Q L A N K L ............................................................................................................................................................................................................................................................................................. ............................................................... Y H L A R H S F A T E I C L T K G V P I E S V S K M L G H T N I Q T T Q I Y A R V V D R K L S H D M N M L D R K L ............................................................................................................................................................................................................................................................................................. Subject: UniRef90_Q8A5G2 Cluster: Transposase; n=1; Bacteroides thetaiotaomicron|Rep: Transposase - Bacteroides thetaiotaomicron HSP 1 e-value: 4.0E-17 bit: 84.3 Len: 168 Query Start:64 Query End:231 Subject Strand: null Subject Start: 351 Subject End: 407 ............................................................... Y H L A R H T F A T - M S L S K G V P M E S V S K M L G H T N I K T T Q I Y A R I T N K K I E H D M E Q L A N K L ............................................................................................................................................................................................................................................................................................. ............................................................... Y H L A R H S F A T E I C L T K G V P I E S V S K M L G H T N I Q T T Q I Y A R V V D R K L S H D M N M L D R K L ............................................................................................................................................................................................................................................................................................. Subject: gi|60680742|ref|YP_210886.1| putative transposase [Bacteroides fragilis NCTC 9343] HSP 1 e-value: 8.0E-17 bit: 83.2 Len: 165 Query Start:67 Query End:231 Subject Strand: null Subject Start: 343 Subject End: 398 .................................................................. Y H L A R H T F A T M S - L S K G V P M E S V S K M L G H T N I K T T Q I Y A R I T N K K I E H D M E Q L A N K ............................................................................................................................................................................................................................................................................................. .................................................................. F H L A R H T F A T T T T L A K G V P I E T V S K M L G H T N I E T T Q I Y A R I T N N K I S N D M Q G L D K K ............................................................................................................................................................................................................................................................................................. Subject: gi|29345486|ref|NP_808989.1| transposase [Bacteroides thetaiotaomicron VPI-5482] HSP 1 e-value: 8.0E-17 bit: 83.2 Len: 165 Query Start:67 Query End:231 Subject Strand: null Subject Start: 341 Subject End: 396 .................................................................. Y H L A R H T F A T M S - L S K G V P M E S V S K M L G H T N I K T T Q I Y A R I T N K K I E H D M E Q L A N K ............................................................................................................................................................................................................................................................................................. .................................................................. F H L A R H T F A T T T T L A K G V P V E T V S K M L G H T N I E T T Q I Y A R I T N N K I S N D M Q G L D K K ............................................................................................................................................................................................................................................................................................. Subject: UniRef90_Q5LG02 Cluster: Putative transposase; n=1; Bacteroides fragilis NCTC 9343|Rep: Putative transposase - Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) HSP 1 e-value: 8.0E-17 bit: 83.2 Len: 165 Query Start:67 Query End:231 Subject Strand: null Subject Start: 343 Subject End: 398 .................................................................. Y H L A R H T F A T M S - L S K G V P M E S V S K M L G H T N I K T T Q I Y A R I T N K K I E H D M E Q L A N K ............................................................................................................................................................................................................................................................................................. .................................................................. F H L A R H T F A T T T T L A K G V P I E T V S K M L G H T N I E T T Q I Y A R I T N N K I S N D M Q G L D K K ............................................................................................................................................................................................................................................................................................. Subject: UniRef90_Q8ABN4 Cluster: Transposase; n=2; Bacteroides|Rep: Transposase - Bacteroides thetaiotaomicron HSP 1 e-value: 8.0E-17 bit: 83.2 Len: 165 Query Start:67 Query End:231 Subject Strand: null Subject Start: 341 Subject End: 396 .................................................................. Y H L A R H T F A T M S - L S K G V P M E S V S K M L G H T N I K T T Q I Y A R I T N K K I E H D M E Q L A N K ............................................................................................................................................................................................................................................................................................. .................................................................. F H L A R H T F A T T T T L A K G V P V E T V S K M L G H T N I E T T Q I Y A R I T N N K I S N D M Q G L D K K ............................................................................................................................................................................................................................................................................................. Subject: gi|29346548|ref|NP_810051.1| transposase [Bacteroides thetaiotaomicron VPI-5482] HSP 1 e-value: 9.0E-16 bit: 79.7 Len: 174 Query Start:58 Query End:231 Subject Strand: null Subject Start: 344 Subject End: 402 ......................................................... Y H L A R H T F A T - M S L S K G V P M E S V S K M L G H T N I K T T Q I Y A R I T N K K I E H D M E Q L A N K L G K ............................................................................................................................................................................................................................................................................................. ......................................................... Y H V A R H T N A T T V L L S H G V P I E T V S R L L G H T D L K T T Q I Y A R I T N Q K I S S D M E I L S H K L E K ............................................................................................................................................................................................................................................................................................. Subject: UniRef90_Q8A8M9 Cluster: Transposase; n=1; Bacteroides thetaiotaomicron|Rep: Transposase - Bacteroides thetaiotaomicron HSP 1 e-value: 9.0E-16 bit: 79.7 Len: 174 Query Start:58 Query End:231 Subject Strand: null Subject Start: 344 Subject End: 402 ......................................................... Y H L A R H T F A T - M S L S K G V P M E S V S K M L G H T N I K T T Q I Y A R I T N K K I E H D M E Q L A N K L G K ............................................................................................................................................................................................................................................................................................. ......................................................... Y H V A R H T N A T T V L L S H G V P I E T V S R L L G H T D L K T T Q I Y A R I T N Q K I S S D M E I L S H K L E K ............................................................................................................................................................................................................................................................................................. Subject: gi|29349431|ref|NP_812934.1| transposase [Bacteroides thetaiotaomicron VPI-5482] HSP 1 e-value: 2.0E-15 bit: 79.0 Len: 180 Query Start:76 Query End:255 Subject Strand: null Subject Start: 38 Subject End: 98 ........................................................................... L T L A * A C I Y H L A R H T F A T - M S L S K G V P M E S V S K M L G H T N I K T T Q I Y A R I T N K K I E H D M E Q L ..................................................................................................................................................................................................................................................................... ........................................................................... L L L A S P C I F H M A R H T F A T T I T L S H G I P I E T V S K M L G H T S I K T T Q I Y A K I L D T K V M D D M A A L ..................................................................................................................................................................................................................................................................... Subject: UniRef90_Q8A0J8 Cluster: Transposase; n=1; Bacteroides thetaiotaomicron|Rep: Transposase - Bacteroides thetaiotaomicron HSP 1 e-value: 2.0E-15 bit: 79.0 Len: 180 Query Start:76 Query End:255 Subject Strand: null Subject Start: 38 Subject End: 98 ........................................................................... L T L A * A C I Y H L A R H T F A T - M S L S K G V P M E S V S K M L G H T N I K T T Q I Y A R I T N K K I E H D M E Q L ..................................................................................................................................................................................................................................................................... ........................................................................... L L L A S P C I F H M A R H T F A T T I T L S H G I P I E T V S K M L G H T S I K T T Q I Y A K I L D T K V M D D M A A L ..................................................................................................................................................................................................................................................................... Subject: UniRef90_Q9ZI85 Cluster: Transposase; n=1; Bacteroides fragilis|Rep: Transposase - Bacteroides fragilis HSP 1 e-value: 3.0E-15 bit: 78.2 Len: 168 Query Start:64 Query End:231 Subject Strand: null Subject Start: 343 Subject End: 399 ............................................................... Y H L A R H T F A T - M S L S K G V P M E S V S K M L G H T N I K T T Q I Y A R I T N K K I E H D M E Q L A N K L ............................................................................................................................................................................................................................................................................................. ............................................................... Y H V A R H T N A T T V L L S H G V P I E T V S R L L G H T N I K T T Q I Y A K I T A Q K I S Q D M E T L S H K L ............................................................................................................................................................................................................................................................................................. Subject: gi|86130576|ref|ZP_01049176.1| putative transposase [Cellulophaga sp. MED134] HSP 1 e-value: 2.0E-14 bit: 75.1 Len: 174 Query Start:58 Query End:231 Subject Strand: null Subject Start: 349 Subject End: 407 ......................................................... Y H L A R H T F A T - M S L S K G V P M E S V S K M L G H T N I K T T Q I Y A R I T N K K I E H D M E Q L A N K L G K ............................................................................................................................................................................................................................................................................................. ......................................................... F H M A R H T F A T T I T L S N G V P I E T V S K L L G H S K I A T T Q I Y A R V L E H K V S N D M D I L K N K L L K ............................................................................................................................................................................................................................................................................................. Subject: UniRef90_UPI000068AC16 Cluster: putative transposase; n=1; Cellulophaga sp. MED134|Rep: putative transposase - Cellulophaga sp. MED134 HSP 1 e-value: 2.0E-14 bit: 75.1 Len: 174 Query Start:58 Query End:231 Subject Strand: null Subject Start: 349 Subject End: 407 ......................................................... Y H L A R H T F A T - M S L S K G V P M E S V S K M L G H T N I K T T Q I Y A R I T N K K I E H D M E Q L A N K L G K ............................................................................................................................................................................................................................................................................................. ......................................................... F H M A R H T F A T T I T L S N G V P I E T V S K L L G H S K I A T T Q I Y A R V L E H K V S N D M D I L K N K L L K ............................................................................................................................................................................................................................................................................................. Subject: gi|29347339|ref|NP_810842.1| transposase [Bacteroides thetaiotaomicron VPI-5482] HSP 1 e-value: 3.0E-14 bit: 74.7 Len: 165 Query Start:67 Query End:231 Subject Strand: null Subject Start: 338 Subject End: 392 .................................................................. Y H L A R H T F A T M S L S K G V P M E S V S K M L G H T N I K T T Q I Y A R I T N K K I E H D M E Q L A N K ............................................................................................................................................................................................................................................................................................. .................................................................. Y H M A R H S F G T L T L T A G I P I E S I A R M M G H T N I D S T Q V Y A Q V T D R K I S S D M N R L M E R ............................................................................................................................................................................................................................................................................................. Subject: UniRef90_Q4AIA3 Cluster: Phage integrase; n=2; Chlorobium phaeobacteroides BS1|Rep: Phage integrase - Chlorobium phaeobacteroides BS1 HSP 1 e-value: 3.0E-14 bit: 74.7 Len: 165 Query Start:64 Query End:228 Subject Strand: null Subject Start: 347 Subject End: 402 ............................................................... H L A R H T F A T - M S L S K G V P M E S V S K M L G H T N I K T T Q I Y A R I T N K K I E H D M E Q L A N K L ................................................................................................................................................................................................................................................................................................ ............................................................... H L A R H T F A T T V T L S N G V P I E S V S K M L G H S S I K T T Q I Y S K V V D T K I S N D M K A L K A K M ................................................................................................................................................................................................................................................................................................ Subject: UniRef90_Q64RY0 Cluster: Tyrosine type site-specific recombinase; n=2; Bacteroides|Rep: Tyrosine type site-specific recombinase - Bacteroides fragilis HSP 1 e-value: 3.0E-14 bit: 74.7 Len: 165 Query Start:67 Query End:231 Subject Strand: null Subject Start: 338 Subject End: 392 .................................................................. Y H L A R H T F A T M S L S K G V P M E S V S K M L G H T N I K T T Q I Y A R I T N K K I E H D M E Q L A N K ............................................................................................................................................................................................................................................................................................. .................................................................. Y H M A R H S F G T L T L T A G I P I E S I A R M M G H T N I D S T Q V Y A Q V T D R K I S S D M N R L M E R ............................................................................................................................................................................................................................................................................................. Subject: gi|67941223|ref|ZP_00533435.1| transposase [Chlorobium phaeobacteroides BS1] HSP 1 e-value: 4.0E-14 bit: 74.3 Len: 165 Query Start:64 Query End:228 Subject Strand: null Subject Start: 53 Subject End: 108 ............................................................... H L A R H T F A T - M S L S K G V P M E S V S K M L G H T N I K T T Q I Y A R I T N K K I E H D M E Q L A N K L ................................................................................................................................................................................................................................................................................................ ............................................................... H L A R H T F A T T V T L S N G V P I E S V S K M L G H N S I K T T Q I Y S K V V D T K I S N D M K A L K A K M ................................................................................................................................................................................................................................................................................................ Subject: gi|83857491|ref|ZP_00951019.1| putative transposase [Croceibacter atlanticus HTCC2559] HSP 1 e-value: 7.0E-14 bit: 73.6 Len: 225 Query Start:64 Query End:288 Subject Strand: null Subject Start: 328 Subject End: 403 ............................................................... T T S Y H I S T Y V P L T L A * A C I Y H L A R H T F A T - M S L S K G V P M E S V S K M L G H T N I K T T Q I Y A R I T N K K I E H D M E Q L A N K L .................................................................................................................................................................................................................................... ............................................................... T N K Y L K E I A I E L G I R K K L T F H V A R H T F A T T V T L S N G V P I E T V S K L L G H T K L S T T Q I Y A R V I E S K V S N D M N K L R D E L .................................................................................................................................................................................................................................... Subject: UniRef90_UPI000066CC12 Cluster: putative transposase; n=1; Croceibacter atlanticus HTCC2559|Rep: putative transposase - Croceibacter atlanticus HTCC2559 HSP 1 e-value: 7.0E-14 bit: 73.6 Len: 225 Query Start:64 Query End:288 Subject Strand: null Subject Start: 328 Subject End: 403 ............................................................... T T S Y H I S T Y V P L T L A * A C I Y H L A R H T F A T - M S L S K G V P M E S V S K M L G H T N I K T T Q I Y A R I T N K K I E H D M E Q L A N K L .................................................................................................................................................................................................................................... ............................................................... T N K Y L K E I A I E L G I R K K L T F H V A R H T F A T T V T L S N G V P I E T V S K L L G H T K L S T T Q I Y A R V I E S K V S N D M N K L R D E L .................................................................................................................................................................................................................................... Subject: gi|29347338|ref|NP_810841.1| transposase [Bacteroides thetaiotaomicron VPI-5482] HSP 1 e-value: 2.0E-13 bit: 72.0 Len: 156 Query Start:79 Query End:234 Subject Strand: null Subject Start: 345 Subject End: 397 .............................................................................. I Y H L A R H T F A T M - S L S K G V P M E S V S K M L G H T N I K T T Q I Y A R I T N K K I E H D M E Q .......................................................................................................................................................................................................................................................................................... .............................................................................. V Y H M G R H S F A S L V T L E E G V P I E T I C K M L G H S N I K T T Q I Y A R V T P K K L F E D M D R .......................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q8A6F6 Cluster: Transposase; n=3; Bacteroides|Rep: Transposase - Bacteroides thetaiotaomicron HSP 1 e-value: 2.0E-13 bit: 72.0 Len: 156 Query Start:79 Query End:234 Subject Strand: null Subject Start: 345 Subject End: 397 .............................................................................. I Y H L A R H T F A T M - S L S K G V P M E S V S K M L G H T N I K T T Q I Y A R I T N K K I E H D M E Q .......................................................................................................................................................................................................................................................................................... .............................................................................. V Y H M G R H S F A S L V T L E E G V P I E T I C K M L G H S N I K T T Q I Y A R V T P K K L F E D M D R .......................................................................................................................................................................................................................................................................................... Subject: gi|60681325|ref|YP_211469.1| putative bacteriophage integrase [Bacteroides fragilis NCTC 9343] HSP 1 e-value: 8.0E-12 bit: 66.6 Len: 273 Query Start:64 Query End:336 Subject Strand: null Subject Start: 315 Subject End: 399 ............................................................... V L P I P I C R R T * K N N * F T T S Y H I S T Y V P L T L A * A C I Y H L A R H T F A T - M S L S K G V P M E S V S K M L G H T N I K T T Q I Y A R I T N K K I E H D M E Q L A N K L .................................................................................................................................................................................... ............................................................... L L P V P - C Y P N C K N G I K V I A K H C G I D K N V T - - - - - - W H Q S R H S Y A T T V C L S N D V P I E T L S K M L G H R S I R T T Q I Y A K I T A E K V S R D M E K L S K Q I .................................................................................................................................................................................... Subject: gi|60683282|ref|YP_213426.1| putative phage integrase [Bacteroides fragilis NCTC 9343] HSP 1 e-value: 2.0E-11 bit: 65.5 Len: 168 Query Start:61 Query End:228 Subject Strand: null Subject Start: 347 Subject End: 402 ............................................................ H L A R H T F A T M S L S K G V P M E S V S K M L G H T N I K T T Q I Y A R I T N K K I E H D M E Q L A N K L G ................................................................................................................................................................................................................................................................................................ ............................................................ H I G R H T F A V L A I L K G M P L E T L Q K V L G H N S I L S T Q V Y A E L I N P K V G E D T D K L C E K I G ................................................................................................................................................................................................................................................................................................ Subject: gi|29350147|ref|NP_813650.1| transposase [Bacteroides thetaiotaomicron VPI-5482] HSP 1 e-value: 1.0E-10 bit: 62.8 Len: 153 Query Start:76 Query End:228 Subject Strand: null Subject Start: 349 Subject End: 399 ........................................................................... H L A R H T F A T M S L S K G V P M E S V S K M L G H T N I K T T Q I Y A R I T N K K I E H D M E Q L ................................................................................................................................................................................................................................................................................................ ........................................................................... H V G R H T F A T F A L A N G V S I E S V A K M L G H T N V Q M T R H Y A R V L D R T V I R E M S Q I ................................................................................................................................................................................................................................................................................................ Subject: UniRef90_Q89YJ2 Cluster: Transposase; n=1; Bacteroides thetaiotaomicron|Rep: Transposase - Bacteroides thetaiotaomicron HSP 1 e-value: 1.0E-10 bit: 62.8 Len: 153 Query Start:76 Query End:228 Subject Strand: null Subject Start: 349 Subject End: 399 ........................................................................... H L A R H T F A T M S L S K G V P M E S V S K M L G H T N I K T T Q I Y A R I T N K K I E H D M E Q L ................................................................................................................................................................................................................................................................................................ ........................................................................... H V G R H T F A T F A L A N G V S I E S V A K M L G H T N V Q M T R H Y A R V L D R T V I R E M S Q I ................................................................................................................................................................................................................................................................................................ Subject: gi|60681287|ref|YP_211431.1| putative bacteriophage integrase [Bacteroides fragilis NCTC 9343] HSP 1 e-value: 2.0E-9 bit: 58.5 Len: 168 Query Start:64 Query End:231 Subject Strand: null Subject Start: 347 Subject End: 403 ............................................................... Y H L A R H T F A T - M S L S K G V P M E S V S K M L G H T N I K T T Q I Y A R I T N K K I E H D M E Q L A N K L ............................................................................................................................................................................................................................................................................................. ............................................................... F H L S R H T F A T T V Y L C N G G T I E A L S K I L G H K H I S T T Q I Y A E V T N R M V S S D F R A I S G N L ............................................................................................................................................................................................................................................................................................. Subject: gi|60680159|ref|YP_210303.1| putative integrase/transposase [Bacteroides fragilis NCTC 9343] HSP 1 e-value: 5.0E-8 bit: 53.9 Len: 162 Query Start:70 Query End:231 Subject Strand: null Subject Start: 333 Subject End: 386 ..................................................................... Y H L A R H T F A T M S L S K G V P M E S V S K M L G H T N I K T T Q I Y A R I T N K K I E H D M E Q L A N ............................................................................................................................................................................................................................................................................................. ..................................................................... F H T A R H T N A T L L I Y S G V N I T T V Q K L L G H K S V K T T Q V Y T N I M D I T I V R D L E K S K N ............................................................................................................................................................................................................................................................................................. Subject: UniRef90_Q64YL1 Cluster: Tyrosine type site-specific recombinase; n=2; Bacteroides fragilis|Rep: Tyrosine type site-specific recombinase - Bacteroides fragilis HSP 1 e-value: 5.0E-8 bit: 53.9 Len: 162 Query Start:70 Query End:231 Subject Strand: null Subject Start: 333 Subject End: 386 ..................................................................... Y H L A R H T F A T M S L S K G V P M E S V S K M L G H T N I K T T Q I Y A R I T N K K I E H D M E Q L A N ............................................................................................................................................................................................................................................................................................. ..................................................................... F H T A R H T N A T L L I Y S G V N I T T V Q K L L G H K S V K T T Q V Y T N I M D I T I V R D L E K S K N ............................................................................................................................................................................................................................................................................................. Subject: gi|60681592|ref|YP_211736.1| putative bacteriophage integrase [Bacteroides fragilis NCTC 9343] HSP 1 e-value: 2.0E-7 bit: 52.0 Len: 144 Query Start:85 Query End:228 Subject Strand: null Subject Start: 360 Subject End: 408 .................................................................................... H L A R H T F A T M S - L S K G V P M E S V S K M L G H T N I K T T Q I Y A R I T N K K I E H D M ................................................................................................................................................................................................................................................................................................ .................................................................................... H V A R H T A A T I V F L A N D V S M E N V S K I L G H S N I R M T Q H Y A K V L D S S I M R D M ................................................................................................................................................................................................................................................................................................ Subject: gi|86144157|ref|ZP_01062494.1| transposase [Flavobacterium sp. MED217] HSP 1 e-value: 1.0E-6 bit: 49.7 Len: 114 Query Start:115 Query End:228 Subject Strand: null Subject Start: 351 Subject End: 388 .................................................................................................................. H L A R H T F A T M S L S K G V P M E S V S K M L G H T N I K T T Q I Y A R ................................................................................................................................................................................................................................................................................................ .................................................................................................................. Y V A R H S F A T Q A M L Q E V P L Q A I S E M L G H T S L N T T Q V Y L K ................................................................................................................................................................................................................................................................................................ Subject: UniRef90_UPI000068E946 Cluster: transposase; n=1; Leeuwenhoekiella blandensis MED217|Rep: transposase - Flavobacterium sp. MED217 HSP 1 e-value: 1.0E-6 bit: 49.7 Len: 114 Query Start:115 Query End:228 Subject Strand: null Subject Start: 351 Subject End: 388 .................................................................................................................. H L A R H T F A T M S L S K G V P M E S V S K M L G H T N I K T T Q I Y A R ................................................................................................................................................................................................................................................................................................ .................................................................................................................. Y V A R H S F A T Q A M L Q E V P L Q A I S E M L G H T S L N T T Q V Y L K ................................................................................................................................................................................................................................................................................................ Subject: gi|29347986|ref|NP_811489.1| transposase [Bacteroides thetaiotaomicron VPI-5482] HSP 1 e-value: 1.0E-6 bit: 49.3 Len: 165 Query Start:64 Query End:228 Subject Strand: null Subject Start: 354 Subject End: 409 ............................................................... H L A R H T F A T - M S L S K G V P M E S V S K M L G H T N I K T T Q I Y A R I T N K K I E H D M E Q L A N K L ................................................................................................................................................................................................................................................................................................ ............................................................... H A G R H T F G T T I T L A N N V P L Q D V S V M L G H A S T R M T Q H Y A R V M N A S L K K S M L N V K K R L ................................................................................................................................................................................................................................................................................................ Subject: UniRef90_Q8A4M3 Cluster: Transposase; n=1; Bacteroides thetaiotaomicron|Rep: Transposase - Bacteroides thetaiotaomicron HSP 1 e-value: 1.0E-6 bit: 49.3 Len: 165 Query Start:64 Query End:228 Subject Strand: null Subject Start: 354 Subject End: 409 ............................................................... H L A R H T F A T - M S L S K G V P M E S V S K M L G H T N I K T T Q I Y A R I T N K K I E H D M E Q L A N K L ................................................................................................................................................................................................................................................................................................ ............................................................... H A G R H T F G T T I T L A N N V P L Q D V S V M L G H A S T R M T Q H Y A R V M N A S L K K S M L N V K K R L ................................................................................................................................................................................................................................................................................................ Subject: gi|77454861|ref|YP_345729.1| putative transposase [Rhodococcus erythropolis PR4] HSP 1 e-value: 9.0E-6 bit: 46.6 Len: 165 Query Start:64 Query End:228 Subject Strand: null Subject Start: 458 Subject End: 512 ............................................................... H L A R H T F A T M S L S K G V P M E S V S K M L G H T N I K T T Q I Y A R I T N K K I E H D M E Q L A N K L ................................................................................................................................................................................................................................................................................................ ............................................................... H Q L R H T L A T Q A I N R G M S L E A I A A L L G H K T M E M T M V Y A R I A D R T V A D Q Y F S V T E K V ................................................................................................................................................................................................................................................................................................ Subject: UniRef90_Q3L976 Cluster: Putative transposase; n=1; Rhodococcus erythropolis PR4|Rep: Putative transposase - Rhodococcus erythropolis (strain PR4) HSP 1 e-value: 9.0E-6 bit: 46.6 Len: 165 Query Start:64 Query End:228 Subject Strand: null Subject Start: 458 Subject End: 512 ............................................................... H L A R H T F A T M S L S K G V P M E S V S K M L G H T N I K T T Q I Y A R I T N K K I E H D M E Q L A N K L ................................................................................................................................................................................................................................................................................................ ............................................................... H Q L R H T L A T Q A I N R G M S L E A I A A L L G H K T M E M T M V Y A R I A D R T V A D Q Y F S V T E K V ................................................................................................................................................................................................................................................................................................ Find nr database================================================ Query_seq: PG0816:PG0819|PG0816:PG0819:hypothetical protein:integrase:<-->:876950..877465 516 aatgatgtctgattttatagttgtacaatctgattaaacgcccatcgctgtattgaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtatgggatattgagacctttcagttaccaaaccgttatcctgttgtttcccgaacaaactgaggtaatgattattggaagaatttttctcatacggtttctttttatctgtttatcaatattttgcgtatcagagaacgctttgataacgggtaattttgcccataaagttaaagcgt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 aatgatgtctgattttatagttgtacaatctgattaaacgcccatcgctgtattgaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtatgggatattgagacctttcagttaccaaaccgttatcctgttgtttcccgaacaaactgaggtaatgattattggaagaatttttctcatacggtttctttttatctgtttatcaatattttgcgtatcagagaacgctttgataacgggtaattttgcccataaagttaaagcgt Predict ORF larger than 30AA ================================================ Protein_Len: 35 Strand: + Start: 44 End: 148 ........................................... M A V L N F P S L F A S C S M S C S I F L L V I R A Y I C V V L I F V ................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 60 Strand: + Start: 52 End: 348 ................................................... M E L S E L V R K L L H V M L N L L V G D T S I Y L R S F N I R V T E H L T H A F H R Y T L A E R H R R K G V S G K V V ........................................................................................................................................................................ Protein_Len: 34 Strand: + Start: 296 End: 397 ....................................................................................................................................................................................................................................................................................................... M F F Y V L R Q I G I G K T V W D I E T F Q L P N R Y P V V S R T N ....................................................................................................................... Protein_Len: 57 Strand: + Start: 345 End: 515 ........................................................................................................................................................................................................................................................................................................................................................ M L R P F S Y Q T V I L L F P E Q T E V M I I G R I F L I R F L F I C L S I F C V S E N A L I T G N F A H K V K A . Protein_Len: 40 Strand: - Start: 365 End: 484 ............................................................................................................................................................................................................................................................................................................................................................................ W V T I R N N G S C V S T I I I P L I K R M R N R K I Q K D I N Q T D S F A K M ................................ Protein_Len: 60 Strand: - Start: 168 End: 395 ....................................................................................................................................................................... D P L T T F V L R L L R L L F M P P F I T V P Q S N T T K R H E A V S L S L C F L I P Y Q S R E T V L G N D Q Q K G F M ......................................................................................................................... Protein_Len: 60 Strand: - Start: 164 End: 361 ................................................................................................................................................................... C G Q Q A V D D C L H T P C P P L Y L G L C A Y S S C L H F Y P L Q N H I L Q K E I N Q S L Y P Y A F C Y P I N L G K M ........................................................................................................................................................... Protein_Len: 60 Strand: - Start: 37 End: 234 .................................... F K G L K N A L Q E M D H E I K K N T I R A Y I Q T T K I N T H G L M K S V S E M P V G K S L S M T A F T H R A L H Y M .......................................................................................................................................................................................................................................................................................... Protein_Len: 42 Strand: - Start: 18 End: 143 ................. L Q V I Q N F A W R Q I S S E S S T R L S S W T M S L R R T P S V L M Y K R L K L M ..................................................................................................................................................................................................................................................................................................................................................................................... aatgatgtctgattttatagttgtacaatctgattaaacgcccatcgctgtattgaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtatgggatattgagacctttcagttaccaaaccgttatcctgttgtttcccgaacaaactgaggtaatgattattggaagaatttttctcatacggtttctttttatctgtttatcaatattttgcgtatcagagaacgctttgataacgggtaattttgcccataaagttaaagcgt Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ aatgatgtctgattttatagttgtacaatctgattaaacgcccatcgctgtattgaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtatgggatattgagacctttcagttaccaaaccgttatcctgttgtttcccgaacaaactgaggtaatgattattggaagaatttttctcatacggtttctttttatctgtttatcaatattttgcgtatcagagaacgctttgataacgggtaattttgcccataaagttaaagcgt Predict TransTerm conf > 70================================================ Find igs database================================================ Query_seq: PG0816:PG0819|PG0816:PG0819:hypothetical protein:integrase:<-->:876950..877465 516 aatgatgtctgattttatagttgtacaatctgattaaacgcccatcgctgtattgaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtatgggatattgagacctttcagttaccaaaccgttatcctgttgtttcccgaacaaactgaggtaatgattattggaagaatttttctcatacggtttctttttatctgtttatcaatattttgcgtatcagagaacgctttgataacgggtaattttgcccataaagttaaagcgt Intra-Species Hit: Count: 2 Min: 1 Max: 516 Len: 516 Subject: NC_002950_PG1454_PG1457|integrase:hypothetical protein|NEGATIVE:POSITIVE|[1538197,1538789]|593 HSP 1 e-value: 2.0E-97 bit: 357.0 Len: 180 Query Start:337 Query End:516 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 180 ................................................................................................................................................................................................................................................................................................................................................agtatgggatattgagacctttcagttaccaaaccgttatcctgttgtttcccgaacaaactgaggtaatgattattggaagaatttttctcatacggtttctttttatctgtttatcaatattttgcgtatcagagaacgctttgataacgggtaattttgcccataaagttaaagcgt ................................................................................................................................................................................................................................................................................................................................................agtatgggatattgagacctttcagttaccaaaccgttatcctgttgtttcccgaacaaactgaggtaatgattattggaagaatttttctcatacggtttctttttatctgtttatcaatattttgcgtatcagagaacgctttgataacgggtaattttgcccataaagttaaagcgt Subject: NC_002950_PG0816_PG0819|hypothetical protein:integrase|NEGATIVE:POSITIVE|[876950,877465]|516 HSP 1 e-value: 2.0E-97 bit: 357.0 Len: 180 Query Start:337 Query End:516 Subject Strand: POSITIVE Subject Start: 337 Subject End: 516 ................................................................................................................................................................................................................................................................................................................................................agtatgggatattgagacctttcagttaccaaaccgttatcctgttgtttcccgaacaaactgaggtaatgattattggaagaatttttctcatacggtttctttttatctgtttatcaatattttgcgtatcagagaacgctttgataacgggtaattttgcccataaagttaaagcgt ................................................................................................................................................................................................................................................................................................................................................agtatgggatattgagacctttcagttaccaaaccgttatcctgttgtttcccgaacaaactgaggtaatgattattggaagaatttttctcatacggtttctttttatctgtttatcaatattttgcgtatcagagaacgctttgataacgggtaattttgcccataaagttaaagcgt HSP 2 e-value: 6.0E-24 bit: 113.0 Len: 57 Query Start:1 Query End:57 Subject Strand: POSITIVE Subject Start: 1 Subject End: 57 aatgatgtctgattttatagttgtacaatctgattaaacgcccatcgctgtattgaa........................................................................................................................................................................................................................................................................................................................................................................................................................................................................... aatgatgtctgattttatagttgtacaatctgattaaacgcccatcgctgtattgaa........................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Inter-species Hit: Count: 1 Min: 398 Max: 516 Len: 119 Subject: pint_PI0387_PI0388|hypothetical protein:integrase|POSITIVE:POSITIVE|[354873,355066]|194 HSP 1 e-value: 2.0E-58 bit: 228.0 Len: 119 Query Start:398 Query End:516 Subject Strand: POSITIVE Subject Start: 1 Subject End: 119 .............................................................................................................................................................................................................................................................................................................................................................................................................tgaggtaatgattattggaagaatttttctcatacggtttctttttatctgtttatcaatattttgcgtatcagagaacgctttgataacgggtaattttgcccataaagttaaagcgt .............................................................................................................................................................................................................................................................................................................................................................................................................tgaggtaatgattattggaagaatttttctcatacggtttcttcttatctgtttatcaatattttgcgtatcagagaacgctttgataacgggtaattttgcccataaagttaaagcgt Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UGAGGUAAUGAUUAUUGGAAGAAUUUUUCUCAUACGGUUUCUUUUUAUCUGUUUAUCAAUAUUUUGCGUAUCAGAGAACGCUUUGAUAACGGGUAAUUUUGCCCAUAAAGUUAAAGCGU (((((....((((........))))..)))))...............((((..((((((....))).))).))))..((((((((((...(((((....))))).....)))))))))) (-23.80) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ ACGCUUUAACUUUAUGGGCAAAAUUACCCGUUAUCAAAGCGUUCUCUGAUACGCAAAAUAUUGAUAAACAGAUAAAAAGAAACCGUAUGAGAAAAAUUCUUCCAAUAAUCAUUACCUCA (((((((......(((((........)))))....)))))))..(((.(((((..........((......))..........))))).)))........................... (-17.95) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 281 41 2 214 177 NC_002950:PG0347|5end_UDP-glucose_4-epimerase_381274..381504_POSITIVE 273 103 64 222 182 NC_002950:PG1077|5end_electron_transfer_flavoprotein,_beta_subunit_1144639..1144869_POSITIVE 266 73 35 154 116 NC_002950:PG0073|5end_orotidine_5'-monophosphate_decarboxylase_88070..88300_NEGATIVE 259 107 66 106 70 NC_002950:PG0354|5end_hypothetical_protein_389283..389513_NEGATIVE 253 105 62 51 14 NC_002950:PG0746|5end_sensor_histidine_kinase_793903..794133_NEGATIVE 252 105 63 146 111 NC_002950:PG2222|5end_acyltransferase,_HtrB/MsbB_family_2336757..2336987_POSITIVE 252 110 61 78 26 NC_002950:PG1475|5end_conjugative_transposon_protein_TraN_1551835..1552065_NEGATIVE 252 79 34 124 77 NC_002950:PG0515|5end_hypothetical_protein_557958..558188_NEGATIVE 243 107 67 92 46 NC_002950:PG1956|5end_4-hydroxybutyrate_CoA-transferase_2047510..2047740_NEGATIVE 243 110 66 64 9 NC_002950:PG1405|5end_hypothetical_protein_1490669..1490899_NEGATIVE 238 79 35 114 61 NC_002950:PG1917|5end_methionine_aminopeptidase,_type_I_2014490..2014720_NEGATIVE 232 106 67 82 50 NC_002950:PG1397|5end_bifunctional_phosphoribosylaminoimidazolecarboxamide_formyltransferase/IMP_cyclohydrolase_1480355..1480585_NEGATIVE 229 80 46 176 140 NC_002950:PG1312|5end_capA_protein,_putative_1390286..1390516_POSITIVE 227 68 24 132 81 NC_002950:PG1508|5end_hypothetical_protein_1586060..1586290_POSITIVE 226 110 65 148 102 NC_002950:PG1725|5end_competence/damage-inducible_protein_CinA_domain_protein_1814766..1814996_POSITIVE 225 107 62 50 6 NC_002950:PG1879|5end_hypothetical_protein_1974451..1974681_POSITIVE 225 104 65 204 175 NC_002950:PG1666|5end_efflux_transporter,_MFP_component,_RND_family_1748442..1748672_POSITIVE 225 109 62 61 13 NC_002950:PG0715|5end_transporter_769596..769826_NEGATIVE 225 104 66 156 117 NC_002950:PG0199|5end_TatD_family_protein_238137..238367_NEGATIVE 224 103 64 195 157 NC_002950:PG0962|5end_prolyl-tRNA_synthetase_1023808..1024038_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 289 103 61 129 93 NC_002950:PG0364|3end_hypothetical_protein_398410..398560_NEGATIVE 266 73 35 137 99 NC_002950:PG0074|3end_peptide_chain_release_factor_1_88087..88237_NEGATIVE 253 105 62 54 17 NC_002950:PG0747|3end_sigma-54_dependent_DNA-binding_response_regulator_793900..794050_NEGATIVE 252 105 63 149 114 NC_002950:PG2221|3end_MiaB-like_tRNA_modifying_enzyme_2336840..2336990_POSITIVE 252 110 61 55 3 NC_002950:PG1476|3end_conjugative_transposon_protein_TraM_1551858..1552008_NEGATIVE 252 79 34 145 98 NC_002950:PG0516|3end_hypothetical_protein_557937..558087_NEGATIVE 246 98 70 151 119 NC_002950:PG1303|3end_helicase,_putative_1382147..1382297_POSITIVE 245 52 11 132 90 NC_002950:PG1798|3end_immunoreactive_46_kDa_antigen_PG99_1893028..1893178_NEGATIVE 238 79 35 114 61 NC_002950:PG1918|3end_preprotein_translocase_SecY_2014490..2014640_NEGATIVE 235 103 78 144 118 NC_002950:PG0037|3end_50S_ribosomal_protein_L19_46964..47114_POSITIVE 227 68 24 121 70 NC_002950:PG1507|3end_hypothetical_protein_1586129..1586279_POSITIVE 226 110 65 148 102 NC_002950:PG1724|3end_O-sialoglycoprotein_endopeptidase_1814846..1814996_POSITIVE 225 60 17 57 2 NC_002950:PG2112|3end_hypothetical_protein_2222663..2222813_POSITIVE 225 104 65 134 105 NC_002950:PG1665|3end_ABC_transporter,_permease_protein,_putative_1748452..1748602_POSITIVE 222 54 17 67 21 NC_002950:PG0430|3end_ferrodoxin_oxidoreductase_beta_subunit_469073..469223_POSITIVE 221 105 66 62 20 NC_002950:PG0151|3end_signal_recognition_particle-docking_protein_FtsY_173541..173691_NEGATIVE 217 104 64 61 24 NC_002950:PG2098|3end_hypothetical_protein_2206459..2206609_NEGATIVE 215 94 51 125 86 NC_002950:PG0216|3end_hypothetical_protein_252536..252686_POSITIVE 214 78 36 64 17 NC_002950:PG0869|3end_mobilization_protein_931850..932000_NEGATIVE 212 102 64 137 101 NC_002950:PG1362|3end_hypothetical_protein_1442140..1442290_NEGATIVE