Origin IGS: ctaaaaaatcaaggaatgattggccgacaaaggtacacacaaagaatctgttgtcctaaattggtattggcgcggagcaattgcatttgaaccgttaacacacttataaacctaactaacgattgctacactcggttatcaaacaagtacgaattaatggggcctttggacaataagcaggcacttttgttcattcattttattgtgtgtcaggcgaccatttagtacacgccggatttccacaggtggaaagttactcccctttaatgagtgcccctttgagacgtccaacgacgttaccggcaacagcacttgtgctcctccaaccatcgcctcgctacccgtgtatgcactttgtgtgccacgctgtgccgtctgattcacattacgtccatacgagccgataccaccttcggctccaataatccattcgactaccttcggcccctgggcagccagtcagggcgatcgcgtttgaaaatttttagtctctttcctccatctccttatttttcaaaggtctcgtttttcggtgctgtctttcggagtactccgaatactctgagaaaaagatattagagaggaaaaagtccgtgcagtttttgttgactgcacggacttttagatttgatttcctaagaaaagggcagaaagagta .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 tactctttctgcccttttcttaggaaatcaaatctaaaagtccgtgcagtcaacaaaaactgcacggactttttcctctctaatatctttttctcagagtattcggagtactccgaaagacagcaccgaaaaacgagacctttgaaaaataaggagatggaggaaagagactaaaaattttcaaacgcgatcgccctgactggctgcccaggggccgaaggtagtcgaatggattattggagccgaaggtggtatcggctcgtatggacgtaatgtgaatcagacggcacagcgtggcacacaaagtgcatacacgggtagcgaggcgatggttggaggagcacaagtgctgttgccggtaacgtcgttggacgtctcaaaggggcactcattaaaggggagtaactttccacctgtggaaatccggcgtgtactaaatggtcgcctgacacacaataaaatgaatgaacaaaagtgcctgcttattgtccaaaggccccattaattcgtacttgtttgataaccgagtgtagcaatcgttagttaggtttataagtgtgttaacggttcaaatgcaattgctccgcgccaataccaatttaggacaacagattctttgtgtgtacctttgtcggccaatcattccttgattttttag Mask Tandem Repeat Region ================================================ ctaaaaaatcaaggaatgattggccgacaaaggtacacacaaagaatctgttgtcctaaattggtattggcgcggagcaattgcatttgaaccgttaacacacttataaacctaactaacgattgctacactcggttatcaaacaagtacgaattaatggggcctttggacaataagcaggcacttttgttcattcattttattgtgtgtcaggcgaccatttagtacacgccggatttccacaggtggaaagttactcccctttaatgagtgcccctttgagacgtccaacgacgttaccggcaacagcacttgtgctcctccaaccatcgcctcgctacccgtgtatgcactttgtgtgccacgctgtgccgtctgattcacattacgtccatacgagccgataccaccttcggctccaataatccattcgactaccttcggcccctgggcagccagtcagggcgatcgcgtttgaaaatttttagtctctttcctccatctccttatttttcaaaggtctcgtttttcggtgctgtctttcggagtactccgaatactctgagaaaaagatattagagaggaaaaagtccgtgcagtttttgttgactgcacggacttttagatttgatttcctaagaaaagggcagaaagagta Find is-nt database================================================ Query_seq: PG0801:PG0802|PG0801:PG0802:polyA polymerase family protein:alpha keto acid dehydrogenase complex, E3 component, lipoamide dehydrogenase:<-<-:857805..858462 658 ctaaaaaatcaaggaatgattggccgacaaaggtacacacaaagaatctgttgtcctaaattggtattggcgcggagcaattgcatttgaaccgttaacacacttataaacctaactaacgattgctacactcggttatcaaacaagtacgaattaatggggcctttggacaataagcaggcacttttgttcattcattttattgtgtgtcaggcgaccatttagtacacgccggatttccacaggtggaaagttactcccctttaatgagtgcccctttgagacgtccaacgacgttaccggcaacagcacttgtgctcctccaaccatcgcctcgctacccgtgtatgcactttgtgtgccacgctgtgccgtctgattcacattacgtccatacgagccgataccaccttcggctccaataatccattcgactaccttcggcccctgggcagccagtcagggcgatcgcgtttgaaaatttttagtctctttcctccatctccttatttttcaaaggtctcgtttttcggtgctgtctttcggagtactccgaatactctgagaaaaagatattagagaggaaaaagtccgtgcagtttttgttgactgcacggacttttagatttgatttcctaagaaaagggcagaaagagta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PG0801:PG0802|PG0801:PG0802:polyA polymerase family protein:alpha keto acid dehydrogenase complex, E3 component, lipoamide dehydrogenase:<-<-:857805..858462 658 ctaaaaaatcaaggaatgattggccgacaaaggtacacacaaagaatctgttgtcctaaattggtattggcgcggagcaattgcatttgaaccgttaacacacttataaacctaactaacgattgctacactcggttatcaaacaagtacgaattaatggggcctttggacaataagcaggcacttttgttcattcattttattgtgtgtcaggcgaccatttagtacacgccggatttccacaggtggaaagttactcccctttaatgagtgcccctttgagacgtccaacgacgttaccggcaacagcacttgtgctcctccaaccatcgcctcgctacccgtgtatgcactttgtgtgccacgctgtgccgtctgattcacattacgtccatacgagccgataccaccttcggctccaataatccattcgactaccttcggcccctgggcagccagtcagggcgatcgcgtttgaaaatttttagtctctttcctccatctccttatttttcaaaggtctcgtttttcggtgctgtctttcggagtactccgaatactctgagaaaaagatattagagaggaaaaagtccgtgcagtttttgttgactgcacggacttttagatttgatttcctaagaaaagggcagaaagagta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PG0801:PG0802|PG0801:PG0802:polyA polymerase family protein:alpha keto acid dehydrogenase complex, E3 component, lipoamide dehydrogenase:<-<-:857805..858462 658 ctaaaaaatcaaggaatgattggccgacaaaggtacacacaaagaatctgttgtcctaaattggtattggcgcggagcaattgcatttgaaccgttaacacacttataaacctaactaacgattgctacactcggttatcaaacaagtacgaattaatggggcctttggacaataagcaggcacttttgttcattcattttattgtgtgtcaggcgaccatttagtacacgccggatttccacaggtggaaagttactcccctttaatgagtgcccctttgagacgtccaacgacgttaccggcaacagcacttgtgctcctccaaccatcgcctcgctacccgtgtatgcactttgtgtgccacgctgtgccgtctgattcacattacgtccatacgagccgataccaccttcggctccaataatccattcgactaccttcggcccctgggcagccagtcagggcgatcgcgtttgaaaatttttagtctctttcctccatctccttatttttcaaaggtctcgtttttcggtgctgtctttcggagtactccgaatactctgagaaaaagatattagagaggaaaaagtccgtgcagtttttgttgactgcacggacttttagatttgatttcctaagaaaagggcagaaagagta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 7 Min: 157 Max: 497 Len: 341 Subject: UniRef90_Q7MV49 Cluster: Hypothetical protein; n=1; Porphyromonas gingivalis|Rep: Hypothetical protein - Porphyromonas gingivalis (Bacteroides gingivalis) HSP 1 e-value: 2.0E-41 bit: 171.0 Len: 288 Query Start:157 Query End:444 Subject Strand: null Subject Start: 22 Subject End: 117 ............................................................................................................................................................ P K V V E W I I G A E G G I G S Y G R N V N Q T A Q R G T Q S A Y T G S E A M V G G A Q V L L P V T S L D V S K G H S L K G S N F P P V E I R R V L N G R L T H N K M N E Q K C L L I V Q R P H ...................................................................................................................................................................................................................... ............................................................................................................................................................ P T V A E W I I G A G G G I G S Y G C N V N Q T A Q R G T Q C A Y T G S K A M I G G A Q V L L P V M S L D V S K G H S L K G S K F P P V E I R R V P N S R L T H N K K N E Q K C L L I V Q R P H ...................................................................................................................................................................................................................... Subject: UniRef90_Q7MSZ0 Cluster: Hypothetical protein; n=2; Porphyromonas gingivalis|Rep: Hypothetical protein - Porphyromonas gingivalis (Bacteroides gingivalis) HSP 1 e-value: 1.0E-36 bit: 155.0 Len: 288 Query Start:157 Query End:444 Subject Strand: null Subject Start: 22 Subject End: 117 ............................................................................................................................................................ P K V V E W I I G A E G G I G S Y G R N V N Q T A Q R G T Q S A Y T G S E A M V G G A Q V L L P V T S L D V S K G H S L K G S N F P P V E I R R V L N G R L T H N K M N E Q K C L L I V Q R P H ...................................................................................................................................................................................................................... ............................................................................................................................................................ P M V A G W I I G A G G G I G S Y G R N V N Q T V Q R G A Q G A Y T G S K A M V G E A Q V L L P V M S F D V S K G H S L K G S R F P L V E I R R V P N S R L T H N K K N K Q K C L L V V Q R S H ...................................................................................................................................................................................................................... Subject: UniRef90_Q7MVZ0 Cluster: Hypothetical protein; n=1; Porphyromonas gingivalis|Rep: Hypothetical protein - Porphyromonas gingivalis (Bacteroides gingivalis) HSP 1 e-value: 8.0E-35 bit: 140.0 Len: 282 Query Start:157 Query End:438 Subject Strand: null Subject Start: 86 Subject End: 201 ............................................................................................................................................................ V V E W I I G A E G G I G S Y G R N V N Q T A Q R G T Q S A Y T G S E A M V G G A Q V L L P V T S L D V S K G H S L K G S N - - - - - - - - - - - - - - - - - - - - - - F P P V E I R R V L N G R L T H N K M N E Q K C L L I V Q R P H ............................................................................................................................................................................................................................ ............................................................................................................................................................ V A G W I I G A G G G I G S Y G R N V N Q T P Q R G T Q S A Y T G S E A M V G G A Q V L L P V M S L N V S K G H S L K G S K F P L V E K E V S T G G K F I F H G R K D I F P L V E N R R V P N S R L T H N K K N K Q K R L L I V Q R S H ............................................................................................................................................................................................................................ HSP 2 e-value: 8.0E-35 bit: 30.0 Len: 45 Query Start:453 Query End:497 Subject Strand: null Subject Start: 46 Subject End: 60 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................... G K R L K I F K R D R P D W L ................................................................................................................................................................. .................................................................................................................................................................................................................................................................................................................................................................................................................................................................... G K R L K I F K R N R P D H L ................................................................................................................................................................. Subject: UniRef90_Q7MTZ0 Cluster: Hypothetical protein; n=1; Porphyromonas gingivalis|Rep: Hypothetical protein - Porphyromonas gingivalis (Bacteroides gingivalis) HSP 1 e-value: 4.0E-33 bit: 143.0 Len: 288 Query Start:157 Query End:444 Subject Strand: null Subject Start: 17 Subject End: 133 ............................................................................................................................................................ P K V V E W I I G A E G G I G S Y G R N V N Q T A Q R G T Q S A Y T G S E A M V G G A Q V L L P V T S L D V S K G H S L K G S N F P P - - - - - - - - - - - - - - - - - - - - - - V E I R R V L N G R L T H N K M N E Q K C L L I V Q R P H ...................................................................................................................................................................................................................... ............................................................................................................................................................ P M V A G W I I G A G G G I G S Y G R N V N Q T A Q R G T - G A Y T G S K A M I G G A Q V L L P V M S F D V S K G H S L K G S K F P P L E K E V S T S G K F I F Q W W K D N F P L V E I R H V P N S R L T H N K K N E Q K C L L I V Q S S H ...................................................................................................................................................................................................................... Subject: UniRef90_Q7MVK1 Cluster: Hypothetical protein; n=1; Porphyromonas gingivalis|Rep: Hypothetical protein - Porphyromonas gingivalis (Bacteroides gingivalis) HSP 1 e-value: 5.0E-22 bit: 106.0 Len: 207 Query Start:238 Query End:444 Subject Strand: null Subject Start: 22 Subject End: 90 ............................................................................................................................................................................................................................................. P K V V E W I I G A E G G I G S Y G R N V N Q T A Q R G T Q S A Y T G S E A M V G G A Q V L L P V T S L D V S K G H S L K G S N F P P V E ...................................................................................................................................................................................................................... ............................................................................................................................................................................................................................................. P K V A G W I I G A G G G I G S Y G R N V N Q T V Q R G A Q G A Y T G S K A M V G E A Q V L L P V M S F G V S K G H S L K R R R F P Q V D ...................................................................................................................................................................................................................... Subject: UniRef90_Q7MUW4 Cluster: Hypothetical protein; n=1; Porphyromonas gingivalis|Rep: Hypothetical protein - Porphyromonas gingivalis (Bacteroides gingivalis) HSP 1 e-value: 2.0E-19 bit: 97.4 Len: 186 Query Start:259 Query End:444 Subject Strand: null Subject Start: 22 Subject End: 83 .................................................................................................................................................................................................................................................................. P K V V E W I I G A E G G I G S Y G R N V N Q T A Q R G T Q S A Y T G S E A M V G G A Q V L L P V T S L D V S K G H S L K G ...................................................................................................................................................................................................................... .................................................................................................................................................................................................................................................................. P T V A G W I I G A G G G I G S Y E R N V N Q T A Q R G T Q G A Y T G S K A M G G G A Q V L L P V M S F D V S K G A L I K G ...................................................................................................................................................................................................................... HSP 2 e-value: 2.0E-19 bit: 21.2 Len: 42 Query Start:239 Query End:280 Subject Strand: null Subject Start: 77 Subject End: 90 .............................................................................................................................................................................................................................................. K G A L I K G E * L S T C G .......................................................................................................................................................................................................................................................................................................................................................................................... .............................................................................................................................................................................................................................................. K G A L I K G E Q I S L G G .......................................................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q7MUT4 Cluster: Hypothetical protein; n=1; Porphyromonas gingivalis|Rep: Hypothetical protein - Porphyromonas gingivalis (Bacteroides gingivalis) HSP 1 e-value: 2.0E-14 bit: 81.3 Len: 150 Query Start:235 Query End:384 Subject Strand: null Subject Start: 1 Subject End: 50 .......................................................................................................................................................................................................................................... V N Q T A Q R G T Q S A Y T G S E A M V G G A Q V L L P V T S L D V S K G H S L K G S N F P P V E I .................................................................................................................................................................................................................................................................................. .......................................................................................................................................................................................................................................... M N Q T A Q R G A Q G A Y T R S K A M V G E A Q V L L P V M S F D V S K G H S L K G S R F P P L E I .................................................................................................................................................................................................................................................................................. ctaaaaaatcaaggaatgattggccgacaaaggtacacacaaagaatctgttgtcctaaattggtattggcgcggagcaattgcatttgaaccgttaacacacttataaacctaactaacgattgctacactcggttatcaaacaagtacgaattannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncccctgggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntccatctccttatttttcaaaggtctcgtttttcggtgctgtctttcggagtactccgaatactctgagaaaaagatattagagaggaaaaagtccgtgcagtttttgttgactgcacggacttttagatttgatttcctaagaaaagggcagaaagagta Predict ORF larger than 30AA ================================================ Protein_Len: 39 Strand: + Start: 106 End: 222 ......................................................................................................... M N L T N D C Y T R L S N K Y E L M G P L D N K Q A L L F I H F I V C Q A T I .................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 173 End: 376 ............................................................................................................................................................................ M S R H F C S F I L L C V R R P F S T R R I S T G G K L L P F N E C P F E T S N D V T G N S T C A P P T I A S L P V Y A .......................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 207 End: 422 .............................................................................................................................................................................................................. M S G D H L V H A G F P Q V E S Y S P L M S A P L R R P T T L P A T A L V L L Q P S P R Y P C M H F V C H A V P S D S H ............................................................................................................................................................................................................................................ Protein_Len: 60 Strand: + Start: 313 End: 576 ........................................................................................................................................................................................................................................................................................................................ M C S S N H R L A T R V C T L C A T L C R L I H I T S I R A D T T F G S N N P F D Y L R P L G S Q S G R S R L K I F S L .................................................................................. Protein_Len: 52 Strand: + Start: 501 End: 656 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M S L F F K G L V F R C C L S E Y S E Y S E K K I L E R K K S V Q F L L T A R T F R F D F L R K G Q K E .. Protein_Len: 33 Strand: - Start: 517 End: 615 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... L D R K E T S D K P T S R I S Q S F S I L S S F T R A T K T S Q M ........................................... Protein_Len: 60 Strand: - Start: 157 End: 459 ............................................................................................................................................................ S V D L S T V P L L V Q A G G V M A E S G T Y A S Q T G R Q A T Q N V N R G Y S G I G G E A G I I W E V V K P G Q A A M ....................................................................................................................................................................................................... Protein_Len: 32 Strand: - Start: 12 End: 107 ........... P I I P R C L Y V C L I Q Q G L N T N A R L L Q M Q V T L V S M ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ctaaaaaatcaaggaatgattggccgacaaaggtacacacaaagaatctgttgtcctaaattggtattggcgcggagcaattgcatttgaaccgttaacacacttataaacctaactaacgattgctacactcggttatcaaacaagtacgaattannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncccctgggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntccatctccttatttttcaaaggtctcgtttttcggtgctgtctttcggagtactccgaatactctgagaaaaagatattagagaggaaaaagtccgtgcagtttttgttgactgcacggacttttagatttgatttcctaagaaaagggcagaaagagta Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ PromScan Matrix: RpoN Strand: - Score: 86 Start: 349 End: 365 ............................................................................................................................................................................................................................................................................................................................................................GTGGCACACAAAGTGCA..................................................................................................................................................................................................................................................................................................... ctaaaaaatcaaggaatgattggccgacaaaggtacacacaaagaatctgttgtcctaaattggtattggcgcggagcaattgcatttgaaccgttaacacacttataaacctaactaacgattgctacactcggttatcaaacaagtacgaattannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncccctgggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntccatctccttatttttcaaaggtctcgtttttcggtgctgtctttcggagtactccgaatactctgagaaaaagatattagagaggaaaaagtccgtgcagtttttgttgactgcacggacttttagatttgatttcctaagaaaagggcagaaagagta Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 100 HP_score: -14.4 Tail_Score: -4.40221 Start: 590 End: 619 Full_Region: ATTAGAGAGGAAAAA GTCCGTGCAGTT TTTGTT GACTGCACGGAC TTTTAGATTTGATTT .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCGTGCAGTTTTTGTTGACTGCACGGAC....................................... TransTerm Strand: - Conf: 100 HP_score: -13.7 Tail_Score: -4.85129 Start: 590 End: 619 Full_Region: aaatcaaatctaaaa gtccgtgcagt caacaaaa actgcacggac tttttcctctctaat .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gtccgtgcagtcaacaaaaactgcacggac....................................... Find igs database================================================ Query_seq: PG0801:PG0802|PG0801:PG0802:polyA polymerase family protein:alpha keto acid dehydrogenase complex, E3 component, lipoamide dehydrogenase:<-<-:857805..858462 658 ctaaaaaatcaaggaatgattggccgacaaaggtacacacaaagaatctgttgtcctaaattggtattggcgcggagcaattgcatttgaaccgttaacacacttataaacctaactaacgattgctacactcggttatcaaacaagtacgaattannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncccctgggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntccatctccttatttttcaaaggtctcgtttttcggtgctgtctttcggagtactccgaatactctgagaaaaagatattagagaggaaaaagtccgtgcagtttttgttgactgcacggacttttagatttgatttcctaagaaaagggcagaaagagta Intra-Species Hit: Count: 1 Min: 1 Max: 658 Len: 658 Subject: NC_002950_PG0801_PG0802|polyA polymerase family protein:alpha keto acid dehydrogenase complex, E3 component, lipoamide dehydrogenase|NEGATIVE:NEGATIVE|[857805,858462]|658 HSP 1 e-value: 7.0E-86 bit: 319.0 Len: 161 Query Start:498 Query End:658 Subject Strand: POSITIVE Subject Start: 498 Subject End: 658 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tccatctccttatttttcaaaggtctcgtttttcggtgctgtctttcggagtactccgaatactctgagaaaaagatattagagaggaaaaagtccgtgcagtttttgttgactgcacggacttttagatttgatttcctaagaaaagggcagaaagagta .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tccatctccttatttttcaaaggtctcgtttttcggtgctgtctttcggagtactccgaatactctgagaaaaagatattagagaggaaaaagtccgtgcagtttttgttgactgcacggacttttagatttgatttcctaagaaaagggcagaaagagta HSP 2 e-value: 7.0E-83 bit: 309.0 Len: 156 Query Start:1 Query End:156 Subject Strand: POSITIVE Subject Start: 1 Subject End: 156 ctaaaaaatcaaggaatgattggccgacaaaggtacacacaaagaatctgttgtcctaaattggtattggcgcggagcaattgcatttgaaccgttaacacacttataaacctaactaacgattgctacactcggttatcaaacaagtacgaatta...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ctaaaaaatcaaggaatgattggccgacaaaggtacacacaaagaatctgttgtcctaaattggtattggcgcggagcaattgcatttgaaccgttaacacacttataaacctaactaacgattgctacactcggttatcaaacaagtacgaatta...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ CUAAAAAAUCAAGGAAUGAUUGGCCGACAAAGGUACACACAAAGAAUCUGUUGUCCUAAAUUGGUAUUGGCGCGGAGCAAUUGCAUUUGAACCGUUAACACACUUAUAAACCUAACUAACGAUUGCUACACUCGGUUAUCAAACAAGUACGAAUUAAUGGGGCCUUUGGACAAUAAGCAGGCACUUUUGUUCAUUCAUUUUAUUGUGUGUCAGGCGACCAUUUAGUACACGCCGGAUUUCCACAGGUGGAAAGUUACUCCCCUUUAAUGAGUGCCCCUUUGAGACGUCCAACGACGUUACCGGCAACAGCACUUGUGCUCCUCCAACCAUCGCCUCGCUACCCGUGUAUGCACUUUGUGUGCCACGCUGUGCCGUCUGAUUCACAUUACGUCCAUACGAGCCGAUACCACCUUCGGCUCCAAUAAUCCAUUCGACUACCUUCGGCCCCUGGGCAGCCAGUCAGGGCGAUCGCGUUUGAAAAUUUUUAGUCUCUUUCCUCCAUCUCCUUAUUUUUCAAAGGUCUCGUUUUUCGGUGCUGUCUUUCGGAGUACUCCGAAUACUCUGAGAAAAAGAUAUUAGAGAGGAAAAAGUCCGUGCAGUUUUUGUUGACUGCACGGACUUUUAGAUUUGAUUUCCUAAGAAAAGGGCAGAAAGAGUA (((((((.(((((...((((((.(((((..((((.(.......).))))(((((((..((((.(((((...((((..(((......)))..)))).........................(((.(((......))).))).....))))).))))...((((((..(((((....((((((....))))))............((((.((((((((........(((((((((((.((((((....))))))..(((((.........))))).........((((((....)))))).)))))...((((....))))........................))))))((((..((((...))))..)))))))))))).))))....)))))...(((((((........))))))).......................)))))).)))))))..))).)).))))))..)))))...))))))).(((((((..((.....((((....(((((..((((.((((((((....((..((((((....)))))).)).)))))))).........))))...((((((((((((((((......))))))))))))))))...))))).....)))).....))..))))))).. (-195.20) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UACUCUUUCUGCCCUUUUCUUAGGAAAUCAAAUCUAAAAGUCCGUGCAGUCAACAAAAACUGCACGGACUUUUUCCUCUCUAAUAUCUUUUUCUCAGAGUAUUCGGAGUACUCCGAAAGACAGCACCGAAAAACGAGACCUUUGAAAAAUAAGGAGAUGGAGGAAAGAGACUAAAAAUUUUCAAACGCGAUCGCCCUGACUGGCUGCCCAGGGGCCGAAGGUAGUCGAAUGGAUUAUUGGAGCCGAAGGUGGUAUCGGCUCGUAUGGACGUAAUGUGAAUCAGACGGCACAGCGUGGCACACAAAGUGCAUACACGGGUAGCGAGGCGAUGGUUGGAGGAGCACAAGUGCUGUUGCCGGUAACGUCGUUGGACGUCUCAAAGGGGCACUCAUUAAAGGGGAGUAACUUUCCACCUGUGGAAAUCCGGCGUGUACUAAAUGGUCGCCUGACACACAAUAAAAUGAAUGAACAAAAGUGCCUGCUUAUUGUCCAAAGGCCCCAUUAAUUCGUACUUGUUUGAUAACCGAGUGUAGCAAUCGUUAGUUAGGUUUAUAAGUGUGUUAACGGUUCAAAUGCAAUUGCUCCGCGCCAAUACCAAUUUAGGACAACAGAUUCUUUGUGUGUACCUUUGUCGGCCAAUCAUUCCUUGAUUUUUUAG ..((((((((.((.((((((((.....(((((...(((((((((((((((........)))))))))))))))...((((.....(((.......)))...(((((.((....(....)...)).)))))....))))..)))))....)))))))).)).)))))))).(((((((...((((.....((((((.....(.(((((((....((((..(((((((.....))))))).(((((((........))))))).......................)))).....(((((((.....)))).)))..))))))).)))))))((((((.((((((....(((....((((.(((((((.(((((((.....((((((((((((((..(((((((.....)))).)))(((....((.((((...(((....))))))).))..))).........)))))......)))))).)))..))))))).)))............(((((((.....((((.....((((....))))....)))).))))))).)))).))))......)))..)))))).........((.((..(((((((((((...))))).))).)))..)).)))))))).....)))).))))))) (-202.60) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 988 410 361 117 68 NC_002950:PG1398|5end_hypothetical_protein_1480694..1480924_POSITIVE 925 490 441 151 101 NC_002950:PG0499|5end_hypothetical_protein_538709..538939_POSITIVE 923 80 31 171 122 NC_002950:PG0801|5end_polyA_polymerase_family_protein_857714..857944_NEGATIVE 885 499 451 158 110 NC_002950:PG1363|5end_hypothetical_protein_1443804..1444034_POSITIVE 873 490 441 151 101 NC_002950:PG2220|5end_hypothetical_protein_2334935..2335165_POSITIVE 871 490 441 151 101 NC_002950:PG1059|5end_hypothetical_protein_1126495..1126725_NEGATIVE 819 150 101 225 176 NC_002950:PG2221|5end_MiaB-like_tRNA_modifying_enzyme_2335426..2335656_POSITIVE 699 445 402 44 1 NC_002950:PG1787|5end_hypothetical_protein_1875908..1876138_NEGATIVE 619 159 116 231 188 NC_002950:PG0500|5end_queuine_tRNA-ribosyltransferase_539197..539427_POSITIVE 613 210 161 215 159 NC_002950:PG0267|5end_arginyl-tRNA_synthetase_299100..299330_POSITIVE 595 210 161 226 170 NC_002950:PG1714|5end_pyridoxamine-phosphate_oxidase_1802492..1802722_NEGATIVE 578 116 73 225 176 NC_002950:PG1397|5end_bifunctional_phosphoribosylaminoimidazolecarboxamide_formyltransferase/IMP_cyclohydrolase_1480355..1480585_NEGATIVE 559 210 161 192 143 NC_002950:PG0033|5end_RmuC_domain_protein_41540..41770_NEGATIVE 536 130 81 227 182 NC_002950:PG2176|5end_ISPg2,_transposase_2284345..2284575_NEGATIVE 504 499 452 203 146 NC_002950:PG0076|5end_N-acetylmuramoyl-L-alanine_amidase,_family_4_91333..91563_NEGATIVE 479 155 112 210 165 NC_002950:PG1060|5end_carboxyl-terminal_protease_1126658..1126888_POSITIVE 478 310 261 228 179 NC_002950:PG1478|5end_conjugative_transposon_protein_TraK_1554116..1554346_NEGATIVE 477 458 417 44 1 NC_002950:PG1251|5end_hypothetical_protein_1327779..1328009_POSITIVE 438 479 435 136 84 NC_002950:PG1788|5end_cysteine_peptidase,_putative_1875976..1876206_POSITIVE 402 472 431 44 3 NC_002950:PG0611|5end_lipoprotein,_putative_664012..664242_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 843 160 111 97 48 NC_002950:PG2220|3end_hypothetical_protein_2335368..2335518_POSITIVE 843 160 111 97 48 NC_002950:PG1251|3end_hypothetical_protein_1328212..1328362_POSITIVE 766 190 141 127 78 NC_002950:PG0499|3end_hypothetical_protein_539142..539292_POSITIVE 710 190 141 127 78 NC_002950:PG0879|3end_hypothetical_protein_941931..942081_NEGATIVE 690 250 201 130 82 NC_002950:PG1398|3end_hypothetical_protein_1480947..1481097_POSITIVE 595 288 241 147 99 NC_002950:PG1363|3end_hypothetical_protein_1444159..1444309_POSITIVE 579 210 161 70 22 NC_002950:PG0197|3end_hypothetical_protein_235941..236091_NEGATIVE 505 538 491 107 59 NC_002950:PG1196|3end_hypothetical_protein_1275359..1275509_POSITIVE 490 532 491 89 42 NC_002950:PG1449|3end_hypothetical_protein_1533582..1533732_NEGATIVE 490 532 491 89 42 NC_002950:PG0824|3end_hypothetical_protein_881930..882080_POSITIVE 403 474 433 128 89 NC_002950:PG0445|3end_peptidase_T_486549..486699_POSITIVE 389 455 413 140 78 NC_002950:PG1389|3end_DNA-binding_protein,_histone-like_family_1470870..1471020_NEGATIVE 387 489 441 68 28 NC_002950:PG1787|3end_hypothetical_protein_1875441..1875591_NEGATIVE 385 445 401 136 98 NC_002950:PG0555|3end_DNA-binding_protein,_histone-like_family_611716..611866_NEGATIVE 383 379 332 81 20 NC_002950:PG2218|3end_potassium_uptake_protein_TrkA_2333000..2333150_POSITIVE 376 250 205 101 40 NC_002950:PG1757|3end_hypothetical_protein_1843931..1844081_NEGATIVE 373 460 413 83 24 NC_002950:PG1562|3end_dTDP-4-dehydrorhamnose_3,5-epimerase_1640992..1641142_NEGATIVE 371 428 388 76 23 NC_002950:PG1472|3end_hypothetical_protein_1549760..1549910_POSITIVE 368 495 452 109 68 NC_002950:PG1061|3end_ISPg6,_transposase_1128730..1128880_NEGATIVE 368 468 423 60 7 NC_002950:PG0670|3end_lipoprotein,_putative_721971..722121_POSITIVE