Origin IGS: ttgtcgcaatgactttctttattgtgcgtgcaaatatagccattttgcatagggcagctgcatagaaacgactccgtattatatataaggaggcgatcgtataaggatgcgtttgggataatctcgcgaatcccatgttctgatagtttacgccccgaattttttatatttctacctcctaaaaacgtggcgtgggaaaatttttcttttggtgcgagaagtgaaaaaaacacgtgccggaacgaaaaagttgcggttccactttttcagaaaacacgtgccacagtcggagcgtttccggttcgtgtttttatgttggcaggttatgagcatgtgcctgcaagggtgatgtgcaatgtcgaaagtaggtcggatcagataaaaacagctgccacaagtactacacttcacttcgtttaataagtcagagacgggttcttttctattgatccctaatggtataatggcgactttttctctgtggagaggttctcgggcggaatggaaataaccgtgaatttttccgaaaagagtcggttgcatggaaaagtctgtacctttggaagaattataaaccaaaaattttgcaccacatggctaacgataagacgcaaaccgtgcag .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 ctgcacggtttgcgtcttatcgttagccatgtggtgcaaaatttttggtttataattcttccaaaggtacagacttttccatgcaaccgactcttttcggaaaaattcacggttatttccattccgcccgagaacctctccacagagaaaaagtcgccattataccattagggatcaatagaaaagaacccgtctctgacttattaaacgaagtgaagtgtagtacttgtggcagctgtttttatctgatccgacctactttcgacattgcacatcacccttgcaggcacatgctcataacctgccaacataaaaacacgaaccggaaacgctccgactgtggcacgtgttttctgaaaaagtggaaccgcaactttttcgttccggcacgtgtttttttcacttctcgcaccaaaagaaaaattttcccacgccacgtttttaggaggtagaaatataaaaaattcggggcgtaaactatcagaacatgggattcgcgagattatcccaaacgcatccttatacgatcgcctccttatatataatacggagtcgtttctatgcagctgccctatgcaaaatggctatatttgcacgcacaataaagaaagtcattgcgacaa Mask Tandem Repeat Region ================================================ ttgtcgcaatgactttctttattgtgcgtgcaaatatagccattttgcatagggcagctgcatagaaacgactccgtattatatataaggaggcgatcgtataaggatgcgtttgggataatctcgcgaatcccatgttctgatagtttacgccccgaattttttatatttctacctcctaaaaacgtggcgtgggaaaatttttcttttggtgcgagaagtgaaaaaaacacgtgccggaacgaaaaagttgcggttccactttttcagaaaacacgtgccacagtcggagcgtttccggttcgtgtttttatgttggcaggttatgagcatgtgcctgcaagggtgatgtgcaatgtcgaaagtaggtcggatcagataaaaacagctgccacaagtactacacttcacttcgtttaataagtcagagacgggttcttttctattgatccctaatggtataatggcgactttttctctgtggagaggttctcgggcggaatggaaataaccgtgaatttttccgaaaagagtcggttgcatggaaaagtctgtacctttggaagaattataaaccaaaaattttgcaccacatggctaacgataagacgcaaaccgtgcag Find is-nt database================================================ Query_seq: PG0792:PG0793|PG0792:PG0793:hypoxanthine phosphoribosyltransferase:fructose-1,6-bisphosphatase:<-->:843805..844427 623 ttgtcgcaatgactttctttattgtgcgtgcaaatatagccattttgcatagggcagctgcatagaaacgactccgtattatatataaggaggcgatcgtataaggatgcgtttgggataatctcgcgaatcccatgttctgatagtttacgccccgaattttttatatttctacctcctaaaaacgtggcgtgggaaaatttttcttttggtgcgagaagtgaaaaaaacacgtgccggaacgaaaaagttgcggttccactttttcagaaaacacgtgccacagtcggagcgtttccggttcgtgtttttatgttggcaggttatgagcatgtgcctgcaagggtgatgtgcaatgtcgaaagtaggtcggatcagataaaaacagctgccacaagtactacacttcacttcgtttaataagtcagagacgggttcttttctattgatccctaatggtataatggcgactttttctctgtggagaggttctcgggcggaatggaaataaccgtgaatttttccgaaaagagtcggttgcatggaaaagtctgtacctttggaagaattataaaccaaaaattttgcaccacatggctaacgataagacgcaaaccgtgcag Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PG0792:PG0793|PG0792:PG0793:hypoxanthine phosphoribosyltransferase:fructose-1,6-bisphosphatase:<-->:843805..844427 623 ttgtcgcaatgactttctttattgtgcgtgcaaatatagccattttgcatagggcagctgcatagaaacgactccgtattatatataaggaggcgatcgtataaggatgcgtttgggataatctcgcgaatcccatgttctgatagtttacgccccgaattttttatatttctacctcctaaaaacgtggcgtgggaaaatttttcttttggtgcgagaagtgaaaaaaacacgtgccggaacgaaaaagttgcggttccactttttcagaaaacacgtgccacagtcggagcgtttccggttcgtgtttttatgttggcaggttatgagcatgtgcctgcaagggtgatgtgcaatgtcgaaagtaggtcggatcagataaaaacagctgccacaagtactacacttcacttcgtttaataagtcagagacgggttcttttctattgatccctaatggtataatggcgactttttctctgtggagaggttctcgggcggaatggaaataaccgtgaatttttccgaaaagagtcggttgcatggaaaagtctgtacctttggaagaattataaaccaaaaattttgcaccacatggctaacgataagacgcaaaccgtgcag Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PG0792:PG0793|PG0792:PG0793:hypoxanthine phosphoribosyltransferase:fructose-1,6-bisphosphatase:<-->:843805..844427 623 ttgtcgcaatgactttctttattgtgcgtgcaaatatagccattttgcatagggcagctgcatagaaacgactccgtattatatataaggaggcgatcgtataaggatgcgtttgggataatctcgcgaatcccatgttctgatagtttacgccccgaattttttatatttctacctcctaaaaacgtggcgtgggaaaatttttcttttggtgcgagaagtgaaaaaaacacgtgccggaacgaaaaagttgcggttccactttttcagaaaacacgtgccacagtcggagcgtttccggttcgtgtttttatgttggcaggttatgagcatgtgcctgcaagggtgatgtgcaatgtcgaaagtaggtcggatcagataaaaacagctgccacaagtactacacttcacttcgtttaataagtcagagacgggttcttttctattgatccctaatggtataatggcgactttttctctgtggagaggttctcgggcggaatggaaataaccgtgaatttttccgaaaagagtcggttgcatggaaaagtctgtacctttggaagaattataaaccaaaaattttgcaccacatggctaacgataagacgcaaaccgtgcag Intra-Species Hit: Count: 0 Inter-species Hit: Count: 3 Min: 139 Max: 327 Len: 189 Subject: UniRef90_Q7MU89 Cluster: Hypothetical protein; n=1; Porphyromonas gingivalis|Rep: Hypothetical protein - Porphyromonas gingivalis (Bacteroides gingivalis) HSP 1 e-value: 2.0E-9 bit: 65.1 Len: 177 Query Start:139 Query End:315 Subject Strand: null Subject Start: 10 Subject End: 68 .......................................................................................................................................... H K N T N R K R S D C G T C F L K K W N R N F F V P A R V F F T S R T K R K I F P R H V F R R * K Y K K F G A * T I R .................................................................................................................................................................................................................................................................................................................... .......................................................................................................................................... H G N T N Q K S S D C G S C F L K K W R E I F F V L A C K F F N C R A K T K K F S R H V F V G N K C E N S G T Q T Y R .................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q7MUH1 Cluster: Hypothetical protein; n=1; Porphyromonas gingivalis|Rep: Hypothetical protein - Porphyromonas gingivalis (Bacteroides gingivalis) HSP 1 e-value: 4.0E-7 bit: 57.0 Len: 180 Query Start:148 Query End:327 Subject Strand: null Subject Start: 9 Subject End: 68 ................................................................................................................................................... L R P E F F I F L P P K N V A W E N F S F G A R S E K N T C R N E K V A V P L F Q K T R A T V G A F P V R V F M L A G Y ........................................................................................................................................................................................................................................................................................................ ................................................................................................................................................... L G S K I F P F A T P Q N A V R K L F Y F G V G S K K F S R H N E K I L A P L F Q G I R A T I G A F P V R V F L N S S F ........................................................................................................................................................................................................................................................................................................ Subject: UniRef90_Q7MTB1 Cluster: Hypothetical protein; n=1; Porphyromonas gingivalis|Rep: Hypothetical protein - Porphyromonas gingivalis (Bacteroides gingivalis) HSP 1 e-value: 4.0E-6 bit: 53.9 Len: 135 Query Start:176 Query End:310 Subject Strand: null Subject Start: 2 Subject End: 46 ............................................................................................................................................................................... L L K T W R G K I F L L V R E V K K T R A G T K K L R F H F F R K H V P Q S E R F R F V F ......................................................................................................................................................................................................................................................................................................................... ............................................................................................................................................................................... L P K T W R E N F F V L V R E V K N L R A T A K K I S R H F F R K Y E P Q P G V F W F V F ......................................................................................................................................................................................................................................................................................................................... ttgtcgcaatgactttctttattgtgcgtgcaaatatagccattttgcatagggcagctgcatagaaacgactccgtattatatataaggaggcgatcgtataaggatgcgtttgggataatctcgcgaatcccatgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngagcatgtgcctgcaagggtgatgtgcaatgtcgaaagtaggtcggatcagataaaaacagctgccacaagtactacacttcacttcgtttaataagtcagagacgggttcttttctattgatccctaatggtataatggcgactttttctctgtggagaggttctcgggcggaatggaaataaccgtgaatttttccgaaaagagtcggttgcatggaaaagtctgtacctttggaagaattataaaccaaaaattttgcaccacatggctaacgataagacgcaaaccgtgcag Predict ORF larger than 30AA ================================================ Protein_Len: 31 Strand: + Start: 234 End: 326 ......................................................................................................................................................................................................................................... M P E R K S C G S T F S E N T C H S R S V S G S C F Y V G R L ......................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 140 End: 346 ........................................................................................................................................... M I V Y A P N F L Y F Y L L K T W R G K I F L L V R E V K K T R A G T K K L R F H F F R K H V P Q S E R F R F V F L C W ..................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 49 End: 417 ................................................ M G Q L H R N D S V L Y I R R R S Y K D A F G I I S R I P C S D S L R P E F F I F L P P K N V A W E N F S F G A R S E K .............................................................................................................................................................................................................. Protein_Len: 40 Strand: + Start: 389 End: 508 .................................................................................................................................................................................................................................................................................................................................................................................................... M P Q V L H F T S F N K S E T G S F L L I P N G I M A T F S L W R G S R A E W K ................................................................................................................... Protein_Len: 47 Strand: + Start: 481 End: 621 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ M E R F S G G M E I T V N F S E K S R L H G K V C T F G R I I N Q K F C T T W L T I R R K P C .. Protein_Len: 56 Strand: - Start: 456 End: 623 ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................... H Y L P S K K E T S L N E P P I S I V T F K E S F L R N C P F T Q V K P L I I F W F N Q V V H S V I L R L G H M Protein_Len: 35 Strand: - Start: 182 End: 286 ..................................................................................................................................................................................... F R P T P F N K K Q H S F H F F C T G S R F L Q P E V K E S F V H W M ................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 60 Strand: - Start: 175 End: 579 .............................................................................................................................................................................. S C K V E N L L D S V P E K R N I G L P I I A V K E R H L P E R A S H F Y G H I K G F L T P Q M S F D T G K S S N Y V M ............................................ Protein_Len: 60 Strand: - Start: 3 End: 233 .. C S C L F S E T N Y I L L R D Y L S A N P I I E R I G H E S L K R G S N K I N R G G L F T A H S F K E K P A L L S F F M ...................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 53 Strand: - Start: 2 End: 160 . T A I V K K I T R A F I A M K C L A A A Y F R S R I I Y L S A I T Y P H T Q S L R A F G M N Q Y N V G R M ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ttgtcgcaatgactttctttattgtgcgtgcaaatatagccattttgcatagggcagctgcatagaaacgactccgtattatatataaggaggcgatcgtataaggatgcgtttgggataatctcgcgaatcccatgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngagcatgtgcctgcaagggtgatgtgcaatgtcgaaagtaggtcggatcagataaaaacagctgccacaagtactacacttcacttcgtttaataagtcagagacgggttcttttctattgatccctaatggtataatggcgactttttctctgtggagaggttctcgggcggaatggaaataaccgtgaatttttccgaaaagagtcggttgcatggaaaagtctgtacctttggaagaattataaaccaaaaattttgcaccacatggctaacgataagacgcaaaccgtgcag Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ ttgtcgcaatgactttctttattgtgcgtgcaaatatagccattttgcatagggcagctgcatagaaacgactccgtattatatataaggaggcgatcgtataaggatgcgtttgggataatctcgcgaatcccatgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngagcatgtgcctgcaagggtgatgtgcaatgtcgaaagtaggtcggatcagataaaaacagctgccacaagtactacacttcacttcgtttaataagtcagagacgggttcttttctattgatccctaatggtataatggcgactttttctctgtggagaggttctcgggcggaatggaaataaccgtgaatttttccgaaaagagtcggttgcatggaaaagtctgtacctttggaagaattataaaccaaaaattttgcaccacatggctaacgataagacgcaaaccgtgcag Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 75 HP_score: -3.3 Tail_Score: -5.0916 Start: 282 End: 307 Full_Region: TCAGAAAACACGTGC CACAGTCGGAG CGT TTCCGGTTCGTG TTTTTATGTTGGCAG .........................................................................................................................................................................................................................................................................................CACAGTCGGAGCGTTTCCGGTTCGTG............................................................................................................................................................................................................................................................................................................................ Find igs database================================================ Query_seq: PG0792:PG0793|PG0792:PG0793:hypoxanthine phosphoribosyltransferase:fructose-1,6-bisphosphatase:<-->:843805..844427 623 ttgtcgcaatgactttctttattgtgcgtgcaaatatagccattttgcatagggcagctgcatagaaacgactccgtattatatataaggaggcgatcgtataaggatgcgtttgggataatctcgcgaatcccatgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngagcatgtgcctgcaagggtgatgtgcaatgtcgaaagtaggtcggatcagataaaaacagctgccacaagtactacacttcacttcgtttaataagtcagagacgggttcttttctattgatccctaatggtataatggcgactttttctctgtggagaggttctcgggcggaatggaaataaccgtgaatttttccgaaaagagtcggttgcatggaaaagtctgtacctttggaagaattataaaccaaaaattttgcaccacatggctaacgataagacgcaaaccgtgcag Intra-Species Hit: Count: 1 Min: 1 Max: 623 Len: 623 Subject: NC_002950_PG0792_PG0793|hypoxanthine phosphoribosyltransferase:fructose-1, 6-bisphosphatase|NEGATIVE:POSITIVE|[843805,844427]|623 HSP 1 e-value: 1.0E-166 bit: 585.0 Len: 295 Query Start:329 Query End:623 Subject Strand: POSITIVE Subject Start: 329 Subject End: 623 ........................................................................................................................................................................................................................................................................................................................................agcatgtgcctgcaagggtgatgtgcaatgtcgaaagtaggtcggatcagataaaaacagctgccacaagtactacacttcacttcgtttaataagtcagagacgggttcttttctattgatccctaatggtataatggcgactttttctctgtggagaggttctcgggcggaatggaaataaccgtgaatttttccgaaaagagtcggttgcatggaaaagtctgtacctttggaagaattataaaccaaaaattttgcaccacatggctaacgataagacgcaaaccgtgcag ........................................................................................................................................................................................................................................................................................................................................agcatgtgcctgcaagggtgatgtgcaatgtcgaaagtaggtcggatcagataaaaacagctgccacaagtactacacttcacttcgtttaataagtcagagacgggttcttttctattgatccctaatggtataatggcgactttttctctgtggagaggttctcgggcggaatggaaataaccgtgaatttttccgaaaagagtcggttgcatggaaaagtctgtacctttggaagaattataaaccaaaaattttgcaccacatggctaacgataagacgcaaaccgtgcag HSP 2 e-value: 3.0E-72 bit: 274.0 Len: 138 Query Start:1 Query End:138 Subject Strand: POSITIVE Subject Start: 1 Subject End: 138 ttgtcgcaatgactttctttattgtgcgtgcaaatatagccattttgcatagggcagctgcatagaaacgactccgtattatatataaggaggcgatcgtataaggatgcgtttgggataatctcgcgaatcccatgt..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ttgtcgcaatgactttctttattgtgcgtgcaaatatagccattttgcatagggcagctgcatagaaacgactccgtattatatataaggaggcgatcgtataaggatgcgtttgggataatctcgcgaatcccatgt..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UUGUCGCAAUGACUUUCUUUAUUGUGCGUGCAAAUAUAGCCAUUUUGCAUAGGGCAGCUGCAUAGAAACGACUCCGUAUUAUAUAUAAGGAGGCGAUCGUAUAAGGAUGCGUUUGGGAUAAUCUCGCGAAUCCCAUGUUCUGAUAGUUUACGCCCCGAAUUUUUUAUAUUUCUACCUCCUAAAAACGUGGCGUGGGAAAAUUUUUCUUUUGGUGCGAGAAGUGAAAAAAACACGUGCCGGAACGAAAAAGUUGCGGUUCCACUUUUUCAGAAAACACGUGCCACAGUCGGAGCGUUUCCGGUUCGUGUUUUUAUGUUGGCAGGUUAUGAGCAUGUGCCUGCAAGGGUGAUGUGCAAUGUCGAAAGUAGGUCGGAUCAGAUAAAAACAGCUGCCACAAGUACUACACUUCACUUCGUUUAAUAAGUCAGAGACGGGUUCUUUUCUAUUGAUCCCUAAUGGUAUAAUGGCGACUUUUUCUCUGUGGAGAGGUUCUCGGGCGGAAUGGAAAUAACCGUGAAUUUUUCCGAAAAGAGUCGGUUGCAUGGAAAAGUCUGUACCUUUGGAAGAAUUAUAAACCAAAAAUUUUGCACCACAUGGCUAACGAUAAGACGCAAACCGUGCAG ....((((((((......))))))))(((((((.....((((((.(((.(((((...(...((((((.((.((((.(((.....))).)))).)).......((((((.((((((((((..((....))))))))...((((((......(((.(((((......((.(((((((..((.........)).))))))).))......))))).))).(((((((((((((((((.(((((((.((((((((.(.....).)))))))).......((((.((......)).))))))))))).))))))))).(((.(((((.......((((((((((....)))).))))))..........((..(((......)))....))..))))))))..........)))))))).........)))))))))).)))))))))))).)..)))))...))).))))))((((((((.....(((((((((((.(((...............))).))))))))))).))))))))..))))))).......((((((.(((((............)))))...(((((.((....))(....).......)))))..)))))) (-179.56) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ CUGCACGGUUUGCGUCUUAUCGUUAGCCAUGUGGUGCAAAAUUUUUGGUUUAUAAUUCUUCCAAAGGUACAGACUUUUCCAUGCAACCGACUCUUUUCGGAAAAAUUCACGGUUAUUUCCAUUCCGCCCGAGAACCUCUCCACAGAGAAAAAGUCGCCAUUAUACCAUUAGGGAUCAAUAGAAAAGAACCCGUCUCUGACUUAUUAAACGAAGUGAAGUGUAGUACUUGUGGCAGCUGUUUUUAUCUGAUCCGACCUACUUUCGACAUUGCACAUCACCCUUGCAGGCACAUGCUCAUAACCUGCCAACAUAAAAACACGAACCGGAAACGCUCCGACUGUGGCACGUGUUUUCUGAAAAAGUGGAACCGCAACUUUUUCGUUCCGGCACGUGUUUUUUUCACUUCUCGCACCAAAAGAAAAAUUUUCCCACGCCACGUUUUUAGGAGGUAGAAAUAUAAAAAAUUCGGGGCGUAAACUAUCAGAACAUGGGAUUCGCGAGAUUAUCCCAAACGCAUCCUUAUACGAUCGCCUCCUUAUAUAUAAUACGGAGUCGUUUCUAUGCAGCUGCCCUAUGCAAAAUGGCUAUAUUUGCACGCACAAUAAAGAAAGUCAUUGCGACAA (..((.((((.(((......))).)))).))..).((((.((((((((............))))))))...(((((((....((..((((......))))..........((......)).....))..(((.....)))..((((((......................(((.((.........)).))).))))))..............((((((((((((..(((((((((((((.....................((((....((((.........))))((((.............))))............))))..((((((((((((...((((((((((((...(((((((((.........)))))))))....)))))))...((((((................)))))).........)))))......(((((((.((..(((((.......(((((((...(.....)....((((((((....))..)))))).)))).))))))))...)))))))))...........))))).)))))))..)))))))))....))))....))))))))).)))..........))))))).))))..... (-153.32) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 973 140 91 231 182 NC_002950:PG0792|5end_hypoxanthine_phosphoribosyltransferase_843714..843944_NEGATIVE 641 300 251 149 103 NC_002950:PG1617|5end_hypothetical_protein_1697755..1697985_NEGATIVE 519 220 171 133 81 NC_002950:PG0132|5end_hypothetical_protein_152879..153109_POSITIVE 517 310 261 59 10 NC_002950:PG1655|5end_hypothetical_protein_1737095..1737325_POSITIVE 511 219 172 163 117 NC_002950:PG0081|5end_hypothetical_protein_93805..94035_POSITIVE 504 220 171 142 92 NC_002950:PG2063|5end_hypothetical_protein_2160596..2160826_NEGATIVE 431 280 232 229 180 NC_002950:PG2127|5end_hypothetical_protein_2233552..2233782_NEGATIVE 415 220 172 49 1 NC_002950:PG1799|5end_hypothetical_protein_1894499..1894729_POSITIVE 387 280 233 128 84 NC_002950:PG1980|5end_hypothetical_protein_2067930..2068160_NEGATIVE 386 218 176 94 49 NC_002950:PG0007|5end_hypothetical_protein_6913..7143_NEGATIVE 384 330 281 86 31 NC_002950:PG0091|5end_transporter,_putative_107400..107630_NEGATIVE 383 306 266 103 60 NC_002950:PG2028|5end_ebsC_protein_2126027..2126257_POSITIVE 376 380 331 117 61 NC_002950:PG1837|5end_hemagglutinin_protein_HagA_1930337..1930567_POSITIVE 376 158 111 75 25 NC_002950:PG0571|5end_aspartate-semialdehyde_dehydrogenase_626399..626629_POSITIVE 376 320 280 49 8 NC_002950:PG0280|5end_ABC_transporter,_permease_protein,_putative_314625..314855_NEGATIVE 374 353 312 66 18 NC_002950:PG0953|5end_deoxyuridine_5'-triphosphate_nucleotidohydrolase_1012724..1012954_POSITIVE 367 280 231 216 166 NC_002950:PG0068|5end_hypothetical_protein_81748..81978_POSITIVE 365 377 334 153 98 NC_002950:PG0788|5end_hypothetical_protein_840676..840906_NEGATIVE 362 349 303 192 145 NC_002950:PG0804|5end_flavodoxin_861765..861995_NEGATIVE 361 279 233 227 177 NC_002950:PG1057|5end_hypothetical_protein_1123419..1123649_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 602 311 273 39 1 NC_002950:PG2227|3end_hypothetical_protein_2342744..2342894_POSITIVE 578 310 264 134 88 NC_002950:PG0732|3end_hypothetical_protein_783018..783168_POSITIVE 503 305 261 45 1 NC_002950:PG1943|3end_hypothetical_protein_2028974..2029124_NEGATIVE 467 320 272 58 7 NC_002950:PG1654|3end_D-alanyl-D-alanine_dipeptidase_1737161..1737311_POSITIVE 403 271 233 61 22 NC_002950:PG0542|3end_hypothetical_protein_595377..595527_NEGATIVE 394 500 455 126 73 NC_002950:PG0333|3end_hypothetical_protein_368811..368961_POSITIVE 383 306 266 94 51 NC_002950:PG2027|3end_hypothetical_protein_2126098..2126248_POSITIVE 377 99 53 133 89 NC_002950:PG0143|3end_hydrolase,_carbon-nitrogen_family_165747..165897_NEGATIVE 365 377 334 127 72 NC_002950:PG0789|3end_hypothetical_protein_840702..840852_NEGATIVE 359 499 455 138 84 NC_002950:PG0094|3end_outer_membrane_efflux_protein,_putative_109688..109838_NEGATIVE 358 330 283 97 36 NC_002950:PG0328|3end_imidazolonepropionase_362155..362305_NEGATIVE 352 398 352 62 20 NC_002950:PG0148|3end_sigma-54-dependent_transcriptional_regulator_169654..169804_NEGATIVE 351 460 411 52 6 NC_002950:PG2068|3end_glycerol-3-phosphate_cytidylyltransferase_2164872..2165022_POSITIVE 348 508 465 86 45 NC_002950:PG0332|3end_transcription_termination_factor_Rho_367675..367825_POSITIVE 347 295 252 144 110 NC_002950:PG0604|3end_4-hydroxy-3-methylbut-2-enyl_diphosphate_reductase_661211..661361_POSITIVE 344 329 281 96 46 NC_002950:PG0603|3end_cytidylate_kinase_660345..660495_POSITIVE 342 330 287 51 5 NC_002950:PG1460|3end_hypothetical_protein_1540399..1540549_POSITIVE 339 300 255 63 5 NC_002950:PG1024|3end_hypothetical_protein_1086876..1087026_POSITIVE 335 320 276 120 71 NC_002950:PG0344|3end_purple_acid_phosphatase_378543..378693_NEGATIVE 334 505 467 58 18 NC_002950:PG0655|3end_hypothetical_protein_706887..707037_POSITIVE