Origin IGS: atcctcattgtggtagggattatgcctatcgatacattttctctgatcaaataaaagcactacggcttttagtacaatatttttatccaccagtaaggccggtcttgctggtggatttgttttttaagactatacaagacgtaaaataaaaaagcacctttcctcccggagaagtgctctttttcggtatttctatgaagtcctaccgactgcgatcgatttatcacttttataatggttacatcattaagaccaaatggctttggctaaacaaatgtgttactattacattggcaaaggtatagccagccatgcatctccacaataccgattaataagtaaaattattctgtaggctacctaaccatatggctaaatggatatgactttcaagatcttgccgatgtgaactaaataagctgacagtcaaaaaagttaattcagcttttgagacctttgcacggcaattggcctgcattttatttgttaattcattgtataataggaagttattttgtatatttgagcattaaaaacagcataatattcctcccatggcataccaatccaagaataccgatgagcatgtaacatttgcagacgcactcctttcaaagcgttatcgcaaagcacaaaacgacttcctcaatcaggttgagaggcttatcgattggcgtccgatcaggacgctgatcaacaagaaatacacgaagcgacaaaatgccatcggcgccccggcttatgacgtgattctcttattcaagatgttgcttttggagacatggtacaacctcagtgattgtgctttggaggagcgcatcaatgattcaatcaccttttcccgattcttggggctatggaagaggtatctcccgaccacagcaccatcagtcgatttcgttcggcactgacagagttggggctcatggacaaactattggcgcagtttaacaaacaactttcccgccatcacatttcggtcagggaaggggtgcttgtcgatgcaagccttgtggagacgccgcataaacccaacggaagcattacgattgaagtcgcagacgacagagaagacaatcggagcgaggaggaaaaagaggcagaggaggattatcaaaaacaggttgtccgtcagcgtaaagggacggatgaagaagcccgttgggtttacaaacaaaagcgttatcactacggatacaaaaagcattgtccgaccaatgttcaaggcattgttcaaaaggtgataacgacagcagcgaaccgcagtgacacgaaggagtttattccgctattggagggtgcaaacatacctcaaggcacagccgtcttggcggacaaaggatatgcttgcggggaaaatcgttcctacctgcaaacccatcaccttcaagacggcatcatgcacaaggcacaacgcaacagggcattgaccgaggaagagaagcaaggaaacaaagcaatcagtcggatacggagcaccatcgaacgcacctttggcagtattcggcggtggtttcatggcggacgatgtcgataccggggacttgccaagacccatactcaaaacattcttgaaagcatcgcctttaatttatacagaaccccggggataattatgtcctcatctctaggataaggcatacccccccttgaggagctcgtgcaagtagctccgcaaggggggatttacaactactttcactccttactgccacccctttcactcgctccttttatgccaagaactcctctttactccatctccttatttttcaaaggtctccttttggtccatacttatagatactccttaggttgcattattttttaccggtacaagccttcgaaagtattcatggtcagagcggcatataatgattaagacatataaaaataaatccatcagcaagattggccttgctgatggataattgtaggaagagacataccaagcgacgaaatcggctgcttgtctcacttggccgatt .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 aatcggccaagtgagacaagcagccgatttcgtcgcttggtatgtctcttcctacaattatccatcagcaaggccaatcttgctgatggatttatttttatatgtcttaatcattatatgccgctctgaccatgaatactttcgaaggcttgtaccggtaaaaaataatgcaacctaaggagtatctataagtatggaccaaaaggagacctttgaaaaataaggagatggagtaaagaggagttcttggcataaaaggagcgagtgaaaggggtggcagtaaggagtgaaagtagttgtaaatccccccttgcggagctacttgcacgagctcctcaagggggggtatgccttatcctagagatgaggacataattatccccggggttctgtataaattaaaggcgatgctttcaagaatgttttgagtatgggtcttggcaagtccccggtatcgacatcgtccgccatgaaaccaccgccgaatactgccaaaggtgcgttcgatggtgctccgtatccgactgattgctttgtttccttgcttctcttcctcggtcaatgccctgttgcgttgtgccttgtgcatgatgccgtcttgaaggtgatgggtttgcaggtaggaacgattttccccgcaagcatatcctttgtccgccaagacggctgtgccttgaggtatgtttgcaccctccaatagcggaataaactccttcgtgtcactgcggttcgctgctgtcgttatcaccttttgaacaatgccttgaacattggtcggacaatgctttttgtatccgtagtgataacgcttttgtttgtaaacccaacgggcttcttcatccgtccctttacgctgacggacaacctgtttttgataatcctcctctgcctctttttcctcctcgctccgattgtcttctctgtcgtctgcgacttcaatcgtaatgcttccgttgggtttatgcggcgtctccacaaggcttgcatcgacaagcaccccttccctgaccgaaatgtgatggcgggaaagttgtttgttaaactgcgccaatagtttgtccatgagccccaactctgtcagtgccgaacgaaatcgactgatggtgctgtggtcgggagatacctcttccatagccccaagaatcgggaaaaggtgattgaatcattgatgcgctcctccaaagcacaatcactgaggttgtaccatgtctccaaaagcaacatcttgaataagagaatcacgtcataagccggggcgccgatggcattttgtcgcttcgtgtatttcttgttgatcagcgtcctgatcggacgccaatcgataagcctctcaacctgattgaggaagtcgttttgtgctttgcgataacgctttgaaaggagtgcgtctgcaaatgttacatgctcatcggtattcttggattggtatgccatgggaggaatattatgctgtttttaatgctcaaatatacaaaataacttcctattatacaatgaattaacaaataaaatgcaggccaattgccgtgcaaaggtctcaaaagctgaattaacttttttgactgtcagcttatttagttcacatcggcaagatcttgaaagtcatatccatttagccatatggttaggtagcctacagaataattttacttattaatcggtattgtggagatgcatggctggctatacctttgccaatgtaatagtaacacatttgtttagccaaagccatttggtcttaatgatgtaaccattataaaagtgataaatcgatcgcagtcggtaggacttcatagaaataccgaaaaagagcacttctccgggaggaaaggtgcttttttattttacgtcttgtatagtcttaaaaaacaaatccaccagcaagaccggccttactggtggataaaaatattgtactaaaagccgtagtgcttttatttgatcagagaaaatgtatcgataggcataatccctaccacaatgaggat Mask Tandem Repeat Region ================================================ atcctcattgtggtagggattatgcctatcgatacattttctctgatcaaataaaagcactacggcttttagtacaatatttttatccaccagtaaggccggtcttgctggtggatttgttttttaagactatacaagacgtaaaataaaaaagcacctttcctcccggagaagtgctctttttcggtatttctatgaagtcctaccgactgcgatcgatttatcacttttataatggttacatcattaagaccaaatggctttggctaaacaaatgtgttactattacattggcaaaggtatagccagccatgcatctccacaataccgattaataagtaaaattattctgtaggctacctaaccatatggctaaatggatatgactttcaagatcttgccgatgtgaactaaataagctgacagtcaaaaaagttaattcagcttttgagacctttgcacggcaattggcctgcattttatttgttaattcattgtataataggaagttattttgtatatttgagcattaaaaacagcataatattcctcccatggcataccaatccaagaataccgatgagcatgtaacatttgcagacgcactcctttcaaagcgttatcgcaaagcacaaaacgacttcctcaatcaggttgagaggcttatcgattggcgtccgatcaggacgctgatcaacaagaaatacacgaagcgacaaaatgccatcggcgccccggcttatgacgtgattctcttattcaagatgttgcttttggagacatggtacaacctcagtgattgtgctttggaggagcgcatcaatgattcaatcaccttttcccgattcttggggctatggaagaggtatctcccgaccacagcaccatcagtcgatttcgttcggcactgacagagttggggctcatggacaaactattggcgcagtttaacaaacaactttcccgccatcacatttcggtcagggaaggggtgcttgtcgatgcaagccttgtggagacgccgcataaacccaacggaagcattacgattgaagtcgcagacgacagagaagacaatcggagcgaggaggaaaaagaggcagaggaggattatcaaaaacaggttgtccgtcagcgtaaagggacggatgaagaagcccgttgggtttacaaacaaaagcgttatcactacggatacaaaaagcattgtccgaccaatgttcaaggcattgttcaaaaggtgataacgacagcagcgaaccgcagtgacacgaaggagtttattccgctattggagggtgcaaacatacctcaaggcacagccgtcttggcggacaaaggatatgcttgcggggaaaatcgttcctacctgcaaacccatcaccttcaagacggcatcatgcacaaggcacaacgcaacagggcattgaccgaggaagagaagcaaggaaacaaagcaatcagtcggatacggagcaccatcgaacgcacctttggcagtattcggcggtggtttcatggcggacgatgtcgataccggggacttgccaagacccatactcaaaacattcttgaaagcatcgcctttaatttatacagaaccccggggataattatgtcctcatctctaggataaggcatacccccccttgaggagctcgtgcaagtagctccgcaaggggggatttacaactactttcactccttactgccacccctttcactcgctccttttatgccaagaactcctctttactccatctccttatttttcaaaggtctccttttggtccatacttatagatactccttaggttgcattattttttaccggtacaagccttcgaaagtattcatggtcagagcggcatataatgattaagacatataaaaataaatccatcagcaagattggccttgctgatggataattgtaggaagagacataccaagcgacgaaatcggctgcttgtctcacttggccgatt Find is-nt database================================================ Query_seq: PG0762:PG0766|PG0762:PG0766:trigger factor, putative:polyribonucleotide nucleotidyltransferase:-><-:814276..816263 1988 atcctcattgtggtagggattatgcctatcgatacattttctctgatcaaataaaagcactacggcttttagtacaatatttttatccaccagtaaggccggtcttgctggtggatttgttttttaagactatacaagacgtaaaataaaaaagcacctttcctcccggagaagtgctctttttcggtatttctatgaagtcctaccgactgcgatcgatttatcacttttataatggttacatcattaagaccaaatggctttggctaaacaaatgtgttactattacattggcaaaggtatagccagccatgcatctccacaataccgattaataagtaaaattattctgtaggctacctaaccatatggctaaatggatatgactttcaagatcttgccgatgtgaactaaataagctgacagtcaaaaaagttaattcagcttttgagacctttgcacggcaattggcctgcattttatttgttaattcattgtataataggaagttattttgtatatttgagcattaaaaacagcataatattcctcccatggcataccaatccaagaataccgatgagcatgtaacatttgcagacgcactcctttcaaagcgttatcgcaaagcacaaaacgacttcctcaatcaggttgagaggcttatcgattggcgtccgatcaggacgctgatcaacaagaaatacacgaagcgacaaaatgccatcggcgccccggcttatgacgtgattctcttattcaagatgttgcttttggagacatggtacaacctcagtgattgtgctttggaggagcgcatcaatgattcaatcaccttttcccgattcttggggctatggaagaggtatctcccgaccacagcaccatcagtcgatttcgttcggcactgacagagttggggctcatggacaaactattggcgcagtttaacaaacaactttcccgccatcacatttcggtcagggaaggggtgcttgtcgatgcaagccttgtggagacgccgcataaacccaacggaagcattacgattgaagtcgcagacgacagagaagacaatcggagcgaggaggaaaaagaggcagaggaggattatcaaaaacaggttgtccgtcagcgtaaagggacggatgaagaagcccgttgggtttacaaacaaaagcgttatcactacggatacaaaaagcattgtccgaccaatgttcaaggcattgttcaaaaggtgataacgacagcagcgaaccgcagtgacacgaaggagtttattccgctattggagggtgcaaacatacctcaaggcacagccgtcttggcggacaaaggatatgcttgcggggaaaatcgttcctacctgcaaacccatcaccttcaagacggcatcatgcacaaggcacaacgcaacagggcattgaccgaggaagagaagcaaggaaacaaagcaatcagtcggatacggagcaccatcgaacgcacctttggcagtattcggcggtggtttcatggcggacgatgtcgataccggggacttgccaagacccatactcaaaacattcttgaaagcatcgcctttaatttatacagaaccccggggataattatgtcctcatctctaggataaggcatacccccccttgaggagctcgtgcaagtagctccgcaaggggggatttacaactactttcactccttactgccacccctttcactcgctccttttatgccaagaactcctctttactccatctccttatttttcaaaggtctccttttggtccatacttatagatactccttaggttgcattattttttaccggtacaagccttcgaaagtattcatggtcagagcggcatataatgattaagacatataaaaataaatccatcagcaagattggccttgctgatggataattgtaggaagagacataccaagcgacgaaatcggctgcttgtctcacttggccgatt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 1 Min: 450 Max: 1783 Len: 1334 Subject: IS|IS1126 HSP 1 e-value: 0.0 bit: 2248.0 Len: 1334 Query Start:450 Query End:1783 Subject Strand: POSITIVE Subject Start: 1 Subject End: 1336 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................gagacctttgcacggcaattggcctgcattttatttgttaattcattgtataataggaagttattttgtatatttgagcattaaaaacagcataatattcctcccatggcataccaatccaagaataccgatgagcatgtaacatttgcagacgcactcctttcaaagcgttatcgcaaagcacaaaacgacttcctcaatcaggttgagaggcttatcgattggcgtccgatcaggacgctgatcaacaagaaatacacgaagcgacaaaatgccatcggcgccccggcttatgacgtgattctcttattcaagatgttgcttttggagacatggtacaacctcagtgattgtgctttggaggagcgcatcaatgattcaatcaccttttcccgattcttggggct----atggaagaggtatctcccgaccacagcaccatcagtcgatttcgttcggcactgacagagttggggctcatggacaaactattggcgcagtttaacaaacaactttcccgccatcacatttcggtcagggaaggggtgcttgtcgatgcaagccttgtggagacgccgcataaa-cccaacggaagcattacgattgaagtcgcagacgacagagaagacaatcggagcgaggaggaaaaagaggcagaggaggattatcaaaaacaggttgtccgtcagcgtaaagggacggatgaagaagcccgttgggtttacaaacaaaagcgttatcactacggatacaaaaagcattgtcc-gaccaatgttcaaggcattgttcaaaaggtgataacgacagcagcgaaccgcagtgacacgaaggagtttattccgctattggagggtgcaaacatacctcaaggcacagccgtcttggcggacaaaggatatgcttgcggggaaaatcgttcctacctgcaaacccatcaccttcaagacggcatcatgcacaaggcacaacgcaacagggcattgaccgaggaagagaagcaaggaaacaaagcaatcagtcggatacggagcaccatcgaacgcacctttggcagtattcggcggtggtttcatggcggacgatgtcgataccggggacttgccaagacccatactcaaaacattcttgaaagcatcgcctttaatttatacagaaccccggggataattatgtcctcatctctaggataaggcatannnnnnnttgaggagctcgtgcaagtagctccgcaaggggggatttacaactactttcactccttactgccacccctttcactcgctccttttatgccaagaactcctctttactccatctccttatttttcaaaggtctc............................................................................................................................................................................................................. .................................................................................................................................................................................................................................................................................................................................................................................................................................................................gagacctttgcacggcgattggcgtatattttgtttgttaattcattgtataataggaagttatttcgtatatttgagtattaaaaacagcataatattcctcccatggcataccaatccaagaataccgatgagcatgtaacatttgcagacgcactcctttcaaagcgttatcgcaaagcacaaaacgacttcctcaatcaggttgagaggcttatcgattggcgtccgatcaggacg-tgatcaacaagaaatacacgaagcgacaaaatgccat-ggcgccccggcttatgacgtgattctcttattcaagatgttgcttttggagacatggtacaacctcagtgattgtgctttggaggagcgcatcaatgattcaatcaccttttcccgattcttgggactgaagatggaagaggtatctcccgaccacagcaccatcagtcgatttcgttcggcactgacagagttggg-ctcatggacaaactattggcgcagtttaacaaacaactttcccgccatcacatttcggtcagggaaggggtgcttgtcgatgcaagccttgtggagacgccacataaagcccaacggaaccattacgattgaagtcgcagcgaacagagaagacaatcggagcgaggcggaaaaagaggacgaggaggattatcaaaaacaggttgtccgccggcgtaaagggacggatgaagaagcc-gttgggtgtacaaacaaaagcgttatcactacggatacaaaaagcattgtcttgaccaatgttcaaggcattgttcaaaaggtgataacgacagcagcgaaccgcagtgacacgaaggagtttattccgctattgcagggtgcaaacatacctcaaggcacagccgtcttggcggacaaaggatatgcttgcggggaaaatcgttcctacctgcaaacccatcaccttcaagacggcatcatgcacaaggcacaacgcaacagggcattgaccgaggaagagaagcaaggaaacaaagcaatcagtccgatacggagcaccatcgaacgcacctttggcagtattcgccggtggtttcatggcggacgatgtcgataccggggacttgccaagacccatactcaaaacattcttgaaagcatcgcctttaatttatacagaaccccggggataattatgtcctcatctctaggataaggcataaccccccttgaggagctcgtgcaagtacgtccgcaaggggggatttacaactactttcactccttactgccacccttttcactcgctccttttttgccaagaactcctcttccctccatctccttattttgcaaaggtctc............................................................................................................................................................................................................. Find is-aa database================================================ Query_seq: PG0762:PG0766|PG0762:PG0766:trigger factor, putative:polyribonucleotide nucleotidyltransferase:-><-:814276..816263 1988 atcctcattgtggtagggattatgcctatcgatacattttctctgatcaaataaaagcactacggcttttagtacaatatttttatccaccagtaaggccggtcttgctggtggatttgttttttaagactatacaagacgtaaaataaaaaagcacctttcctcccggagaagtgctctttttcggtatttctatgaagtcctaccgactgcgatcgatttatcacttttataatggttacatcattaagaccaaatggctttggctaaacaaatgtgttactattacattggcaaaggtatagccagccatgcatctccacaataccgattaataagtaaaattattctgtaggctacctaaccatatggctaaatggatatgactttcaagatcttgccgatgtgaactaaataagctgacagtcaaaaaagttaattcagcttttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttttggtccatacttatagatactccttaggttgcattattttttaccggtacaagccttcgaaagtattcatggtcagagcggcatataatgattaagacatataaaaataaatccatcagcaagattggccttgctgatggataattgtaggaagagacataccaagcgacgaaatcggctgcttgtctcacttggccgatt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PG0762:PG0766|PG0762:PG0766:trigger factor, putative:polyribonucleotide nucleotidyltransferase:-><-:814276..816263 1988 atcctcattgtggtagggattatgcctatcgatacattttctctgatcaaataaaagcactacggcttttagtacaatatttttatccaccagtaaggccggtcttgctggtggatttgttttttaagactatacaagacgtaaaataaaaaagcacctttcctcccggagaagtgctctttttcggtatttctatgaagtcctaccgactgcgatcgatttatcacttttataatggttacatcattaagaccaaatggctttggctaaacaaatgtgttactattacattggcaaaggtatagccagccatgcatctccacaataccgattaataagtaaaattattctgtaggctacctaaccatatggctaaatggatatgactttcaagatcttgccgatgtgaactaaataagctgacagtcaaaaaagttaattcagcttttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttttggtccatacttatagatactccttaggttgcattattttttaccggtacaagccttcgaaagtattcatggtcagagcggcatataatgattaagacatataaaaataaatccatcagcaagattggccttgctgatggataattgtaggaagagacataccaagcgacgaaatcggctgcttgtctcacttggccgatt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 atcctcattgtggtagggattatgcctatcgatacattttctctgatcaaataaaagcactacggcttttagtacaatatttttatccaccagtaaggccggtcttgctggtggatttgttttttaagactatacaagacgtaaaataaaaaagcacctttcctcccggagaagtgctctttttcggtatttctatgaagtcctaccgactgcgatcgatttatcacttttataatggttacatcattaagaccaaatggctttggctaaacaaatgtgttactattacattggcaaaggtatagccagccatgcatctccacaataccgattaataagtaaaattattctgtaggctacctaaccatatggctaaatggatatgactttcaagatcttgccgatgtgaactaaataagctgacagtcaaaaaagttaattcagcttttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttttggtccatacttatagatactccttaggttgcattattttttaccggtacaagccttcgaaagtattcatggtcagagcggcatataatgattaagacatataaaaataaatccatcagcaagattggccttgctgatggataattgtaggaagagacataccaagcgacgaaatcggctgcttgtctcacttggccgatt Predict ORF larger than 30AA ================================================ Protein_Len: 37 Strand: + Start: 36 End: 146 ................................... M F S D Q I K A L R L L V Q Y F Y P P V R P V L L V D L F F K T I Q D V K .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 43 Strand: + Start: 174 End: 302 ............................................................................................................................................................................. M L F F G I S M K S Y R L R S I Y H F Y N G Y I I K T K W L W L N K C V T I T L A K V ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 32 Strand: + Start: 257 End: 352 ................................................................................................................................................................................................................................................................ M A L A K Q M C Y Y Y I G K G I A S H A S P Q Y R L I S K I I L .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 37 Strand: + Start: 420 End: 530 ................................................................................................................................................................................................................................................................................................................................................................................................................................... M T V K K V N S A F E T F A R Q L A C I L F V N S L Y N R K L F C I F E H .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 50 Strand: + Start: 439 End: 588 ...................................................................................................................................................................................................................................................................................................................................................................................................................................................... M Q L L R P L H G N W P A F Y L L I H C I I G S Y F V Y L S I K N S I I F L P W H T N P R I P M S M ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 32 Strand: + Start: 595 End: 690 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M Q T H S F Q S V I A K H K T T S S I R L R G L S I G V R S G R .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 60 Strand: + Start: 546 End: 908 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M P P M A Y Q S K N T D E H V T F A D A L L S K R Y R K A Q N D F L N Q V E R L I D W R P I R T L I N K K Y T K R Q N A ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 51 Strand: + Start: 796 End: 948 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M I V L W R S A S M I Q S P F P D S W G Y G R G I S R P Q H H Q S I S F G T D R V G A H G Q T I G A V ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 60 Strand: + Start: 969 End: 1241 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ M T F R S G K G C L S M Q A L W R R R I N P T E A L R L K S Q T T E K T I G A R R K K R Q R R I I K N R L S V S V K G R ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 35 Strand: + Start: 1162 End: 1266 ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M G L Q T K A L S L R I Q K A L S D Q C S R H C S K G D N D S S E P Q .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 54 Strand: + Start: 1266 End: 1427 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M T R R S L F R Y W R V Q T Y L K A Q P S W R T K D M L A G K I V P T C K P I T F K T A S C T R H N A T G H ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 60 Strand: + Start: 1291 End: 1572 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M G G C K H T S R H S R L G G Q R I C L R G K S F L P A N P S P S R R H H A Q G T T Q Q G I D R G R E A R K Q S N Q S D ................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 39 Strand: + Start: 1494 End: 1610 ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M A V F G G G F M A D D V D T G D L P R P I L K T F L K A S P L I Y T E P R G .......................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 845 End: 1633 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ M L G A M E E V S P D H S T I S R F R S A L T E L G L M D K L L A Q F N K Q L S R H H I S V R E G V L V D A S L V E T P ................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 1640 End: 1879 ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M P P L E E L V Q V A P Q G G I Y N Y F H S L L P P L S L A P F M P R T P L Y S I S L F F K G L L L V H T Y R Y S L G C ............................................................................................................. Protein_Len: 33 Strand: + Start: 1888 End: 1986 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M K I N P S A R L A L L M D N C R K R H T K R R N R L L V S L G R .. Protein_Len: 30 Strand: - Start: 1863 End: 1952 ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... L P M Y H N L C I F I F G D A L N A K S I S L Q L F L C V M .................................... Protein_Len: 58 Strand: - Start: 1814 End: 1987 ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... T A N N K V P V L R R F Y E H D S R C I I I L V Y L F L D M L L I P R A S P Y N Y S S V Y W A V F D A A Q R V Q G M . Protein_Len: 36 Strand: - Start: 1617 End: 1724 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ T R M E L I L C V G G Q P A R A L L E A L P S K C S S E S R V A V G K M ........................................................................................................................................................................................................................................................................ Protein_Len: 41 Strand: - Start: 1564 End: 1686 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... F M R S L M A K L K Y L V G P I I I D E D R P Y P M G G R S S S T C T A G C P P M .............................................................................................................................................................................................................................................................................................................. Protein_Len: 38 Strand: - Start: 1390 End: 1503 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. S P M M C L A C R L L A N V S S S F C P F L A I L R I R L V M S R V K P L M ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 1292 End: 1591 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... L A V P C Q G L F L L L S V F C D T P Y P A G D F A G K A T N P P P K M A S S T S V P S K G L G M S L V N K F A D G K M ............................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 60 Strand: - Start: 1047 End: 1256 ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... D S R P P F L P L P P N D F V P Q G D A Y L S P H L L G N P K C V F A N D S R I C F A N D S W H E L C Q E F P S L S L M ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 35 Strand: - Start: 973 End: 1077 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ M E T L S P T S T S A L R T S V G C L G L P L M V I S T A S S L S S M ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 938 End: 1237 ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... C V V S F V I P A L L F F L C L L I I L F L N D T L T F P R I F F G T P N V F L L T I V V S V F L M T R G I N L A N N M ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 40 Strand: - Start: 835 End: 954 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. R K G I R P A I S S T D G S W L V M L R N R E A S V S N P S M S L S N A C N L M .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 46 Strand: - Start: 743 End: 880 ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... S T I R K N L I N S K S V H Y L R L S Q A K S S R M L S E I V K E R N K P S H F L Y R G V M .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 43 Strand: - Start: 615 End: 743 ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... L T I A F C L V V E E I L N L P K D I P T R D P R Q D V L F V R L S L I G D A G R S M ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 48 Strand: - Start: 490 End: 633 ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... N M T Y Y S T I K Y I Q A N F V A Y Y E E W P M G I W S Y R H A H L M Q L R V G K L A N D C L M ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 335 End: 520 .............................................................................................................................................................................................................................................................................................................................................. F N N Q L S G L W I A L H I H S E L D Q R H S S F L S V T L F T L E A K S V K A R C N A Q M K N T L E N Y L L F N N Q M ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 37 Strand: - Start: 86 End: 196 ..................................................................................... G G T L G T K S T S K N K L V I C S T F Y F L V K G G P S T S K K P I E M ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 55 Strand: - Start: 72 End: 236 ....................................................................... Y L I K I W W Y P R D Q Q H I Q K K L S Y L V Y F L F A G K R G S F H E K E T N R H L G V S Q S R N I V K I M ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 31 Strand: - Start: 1 End: 93 D E N H Y P N H R D I C K R Q D F L L V V A K L V I N K D V M ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... atcctcattgtggtagggattatgcctatcgatacattttctctgatcaaataaaagcactacggcttttagtacaatatttttatccaccagtaaggccggtcttgctggtggatttgttttttaagactatacaagacgtaaaataaaaaagcacctttcctcccggagaagtgctctttttcggtatttctatgaagtcctaccgactgcgatcgatttatcacttttataatggttacatcattaagaccaaatggctttggctaaacaaatgtgttactattacattggcaaaggtatagccagccatgcatctccacaataccgattaataagtaaaattattctgtaggctacctaaccatatggctaaatggatatgactttcaagatcttgccgatgtgaactaaataagctgacagtcaaaaaagttaattcagcttttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttttggtccatacttatagatactccttaggttgcattattttttaccggtacaagccttcgaaagtattcatggtcagagcggcatataatgattaagacatataaaaataaatccatcagcaagattggccttgctgatggataattgtaggaagagacataccaagcgacgaaatcggctgcttgtctcacttggccgatt Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: + Score: 81 Start: 494 End: 523 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTATAATAGGAAGTTATTTTGTATATT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ atcctcattgtggtagggattatgcctatcgatacattttctctgatcaaataaaagcactacggcttttagtacaatatttttatccaccagtaaggccggtcttgctggtggatttgttttttaagactatacaagacgtaaaataaaaaagcacctttcctcccggagaagtgctctttttcggtatttctatgaagtcctaccgactgcgatcgatttatcacttttataatggttacatcattaagaccaaatggctttggctaaacaaatgtgttactattacattggcaaaggtatagccagccatgcatctccacaataccgattaataagtaaaattattctgtaggctacctaaccatatggctaaatggatatgactttcaagatcttgccgatgtgaactaaataagctgacagtcaaaaaagttaattcagcttttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttttggtccatacttatagatactccttaggttgcattattttttaccggtacaagccttcgaaagtattcatggtcagagcggcatataatgattaagacatataaaaataaatccatcagcaagattggccttgctgatggataattgtaggaagagacataccaagcgacgaaatcggctgcttgtctcacttggccgatt Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 59 HP_score: -5.1 Tail_Score: -3.72576 Start: 52 End: 71 Full_Region: ataaaaatattgtac taaaagc cgtagt gctttta tttgatcagagaaaa ...................................................taaaagccgtagtgctttta............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: + Conf: 83 HP_score: -6.3 Tail_Score: -5.04385 Start: 82 End: 119 Full_Region: TTTTAGTACAATATT TTTATCCACCAGTAAGG CCGG TCTTGCTGGTGGATTTG TTTTTTAAGACTATA .................................................................................TTTATCCACCAGTAAGGCCGGTCTTGCTGGTGGATTTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: + Conf: 100 HP_score: -13.7 Tail_Score: -5.04249 Start: 86 End: 115 Full_Region: AGTACAATATTTTTA TCCACCAGTAAGG CCGG TCTTGCTGGTGGA TTTGTTTTTTAAGAC .....................................................................................TCCACCAGTAAGGCCGGTCTTGCTGGTGGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: + Conf: 75 HP_score: -4.8 Tail_Score: -4.7889 Start: 152 End: 179 Full_Region: AGACGTAAAATAAAA AAGCACCTTTCC TCCC GGAGAAGTGCTC TTTTTCGGTATTTCT .......................................................................................................................................................AAGCACCTTTCCTCCCGGAGAAGTGCTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: - Conf: 100 HP_score: -7.4 Tail_Score: -5.80951 Start: 154 End: 177 Full_Region: aaataccgaaaaaga gcacttctcc ggga ggaaaggtgc ttttttattttacgt .........................................................................................................................................................gcacttctccgggaggaaaggtgc................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 70 HP_score: -7.4 Tail_Score: -3.9951 Start: 154 End: 177 Full_Region: ACGTAAAATAAAAAA GCACCTTTCC TCCC GGAGAAGTGC TCTTTTTCGGTATTT .........................................................................................................................................................GCACCTTTCCTCCCGGAGAAGTGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 77 HP_score: -4.3 Tail_Score: -5.13527 Start: 458 End: 477 Full_Region: AGCTTTTGAGACCTT TGCACGGC AATTG GCCTGCA TTTTATTTGTTAATT .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCACGGCAATTGGCCTGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 42 HP_score: -3.4 Tail_Score: -2.60808 Start: 1412 End: 1429 Full_Region: cttctcttcctcggt caatgc cctgtt gcgttg tgccttgtgcatgat ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................caatgccctgttgcgttg............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 46 HP_score: -4.3 Tail_Score: -2.57463 Start: 1615 End: 1642 Full_Region: ctcctcaaggggggg tatgccttatc ctaga gatgaggacata attatccccggggtt ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tatgccttatcctagagatgaggacata.......................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 95 HP_score: -12.9 Tail_Score: -3.41051 Start: 1637 End: 1691 Full_Region: aggagtgaaagtagt tgtaaatccccccttgcggagct acttgcacg agctcctcaagggggggtatgcc ttatcctagagatga ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tgtaaatccccccttgcggagctacttgcacgagctcctcaagggggggtatgcc......................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 100 HP_score: -16.4 Tail_Score: -2.64416 Start: 1638 End: 1690 Full_Region: ggagtgaaagtagtt gtaaatccccccttgcggagct acttgcacg agctcctcaagggggggtatgc cttatcctagagatg .....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gtaaatccccccttgcggagctacttgcacgagctcctcaagggggggtatgc.......................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 100 HP_score: -14.9 Tail_Score: -3.6003 Start: 1643 End: 1685 Full_Region: CTAGGATAAGGCATA CCCCCCCTTGAGGAGCT CGTGCAAGT AGCTCCGCAAGGGGGGA TTTACAACTACTTTC ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCCCCTTGAGGAGCTCGTGCAAGTAGCTCCGCAAGGGGGGA............................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 100 HP_score: -18.4 Tail_Score: -2.75536 Start: 1644 End: 1684 Full_Region: TAGGATAAGGCATAC CCCCCCTTGAGGAGCT CGTGCAAGT AGCTCCGCAAGGGGGG ATTTACAACTACTTT ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCCCTTGAGGAGCTCGTGCAAGTAGCTCCGCAAGGGGGG................................................................................................................................................................................................................................................................................................................ TransTerm Strand: - Conf: 87 HP_score: -8.2 Tail_Score: -5.09685 Start: 1895 End: 1931 Full_Region: tgtctcttcctacaa ttatccatcagcaagg ccaa tcttgctgatggattta tttttatatgtctta ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttatccatcagcaaggccaatcttgctgatggattta......................................................... TransTerm Strand: + Conf: 71 HP_score: -9.1 Tail_Score: -3.28712 Start: 1896 End: 1931 Full_Region: AAGACATATAAAAAT AAATCCATCAGCAAG ATTGGC CTTGCTGATGGATAA TTGTAGGAAGAGACA .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCCATCAGCAAGATTGGCCTTGCTGATGGATAA......................................................... TransTerm Strand: - Conf: 100 HP_score: -15.9 Tail_Score: -5.02777 Start: 1899 End: 1928 Full_Region: ctcttcctacaatta tccatcagcaagg ccaa tcttgctgatgga tttatttttatatgt ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tccatcagcaaggccaatcttgctgatgga............................................................ Find igs database================================================ Query_seq: PG0762:PG0766|PG0762:PG0766:trigger factor, putative:polyribonucleotide nucleotidyltransferase:-><-:814276..816263 1988 atcctcattgtggtagggattatgcctatcgatacattttctctgatcaaataaaagcactacggcttttagtacaatatttttatccaccagtaaggccggtcttgctggtggatttgttttttaagactatacaagacgtaaaataaaaaagcacctttcctcccggagaagtgctctttttcggtatttctatgaagtcctaccgactgcgatcgatttatcacttttataatggttacatcattaagaccaaatggctttggctaaacaaatgtgttactattacattggcaaaggtatagccagccatgcatctccacaataccgattaataagtaaaattattctgtaggctacctaaccatatggctaaatggatatgactttcaagatcttgccgatgtgaactaaataagctgacagtcaaaaaagttaattcagcttttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttttggtccatacttatagatactccttaggttgcattattttttaccggtacaagccttcgaaagtattcatggtcagagcggcatataatgattaagacatataaaaataaatccatcagcaagattggccttgctgatggataattgtaggaagagacataccaagcgacgaaatcggctgcttgtctcacttggccgatt Intra-Species Hit: Count: 1 Min: 1 Max: 1988 Len: 1988 Subject: NC_002950_PG0762_PG0766|trigger factor, putative:polyribonucleotide nucleotidyltransferase|POSITIVE:NEGATIVE|[814276, 816263]|1988 HSP 1 e-value: 0.0 bit: 890.0 Len: 449 Query Start:1 Query End:449 Subject Strand: POSITIVE Subject Start: 1 Subject End: 449 atcctcattgtggtagggattatgcctatcgatacattttctctgatcaaataaaagcactacggcttttagtacaatatttttatccaccagtaaggccggtcttgctggtggatttgttttttaagactatacaagacgtaaaataaaaaagcacctttcctcccggagaagtgctctttttcggtatttctatgaagtcctaccgactgcgatcgatttatcacttttataatggttacatcattaagaccaaatggctttggctaaacaaatgtgttactattacattggcaaaggtatagccagccatgcatctccacaataccgattaataagtaaaattattctgtaggctacctaaccatatggctaaatggatatgactttcaagatcttgccgatgtgaactaaataagctgacagtcaaaaaagttaattcagctttt................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... atcctcattgtggtagggattatgcctatcgatacattttctctgatcaaataaaagcactacggcttttagtacaatatttttatccaccagtaaggccggtcttgctggtggatttgttttttaagactatacaagacgtaaaataaaaaagcacctttcctcccggagaagtgctctttttcggtatttctatgaagtcctaccgactgcgatcgatttatcacttttataatggttacatcattaagaccaaatggctttggctaaacaaatgtgttactattacattggcaaaggtatagccagccatgcatctccacaataccgattaataagtaaaattattctgtaggctacctaaccatatggctaaatggatatgactttcaagatcttgccgatgtgaactaaataagctgacagtcaaaaaagttaattcagctttt................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 1.0E-111 bit: 406.0 Len: 205 Query Start:1784 Query End:1988 Subject Strand: POSITIVE Subject Start: 1784 Subject End: 1988 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cttttggtccatacttatagatactccttaggttgcattattttttaccggtacaagccttcgaaagtattcatggtcagagcggcatataatgattaagacatataaaaataaatccatcagcaagattggccttgctgatggataattgtaggaagagacataccaagcgacgaaatcggctgcttgtctcacttggccgatt .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cttttggtccatacttatagatactccttaggttgcattattttttaccggtacaagccttcgaaagtattcatggtcagagcggcatataatgattaagacatataaaaataaatccatcagcaagattggccttgctgatggataattgtaggaagagacataccaagcgacgaaatcggctgcttgtctcacttggccgatt Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AUCCUCAUUGUGGUAGGGAUUAUGCCUAUCGAUACAUUUUCUCUGAUCAAAUAAAAGCACUACGGCUUUUAGUACAAUAUUUUUAUCCACCAGUAAGGCCGGUCUUGCUGGUGGAUUUGUUUUUUAAGACUAUACAAGACGUAAAAUAAAAAAGCACCUUUCCUCCCGGAGAAGUGCUCUUUUUCGGUAUUUCUAUGAAGUCCUACCGACUGCGAUCGAUUUAUCACUUUUAUAAUGGUUACAUCAUUAAGACCAAAUGGCUUUGGCUAAACAAAUGUGUUACUAUUACAUUGGCAAAGGUAUAGCCAGCCAUGCAUCUCCACAAUACCGAUUAAUAAGUAAAAUUAUUCUGUAGGCUACCUAACCAUAUGGCUAAAUGGAUAUGACUUUCAAGAUCUUGCCGAUGUGAACUAAAUAAGCUGACAGUCAAAAAAGUUAAUUCAGCUUUUGAGACCUUUGCACGGCAAUUGGCCUGCAUUUUAUUUGUUAAUUCAUUGUAUAAUAGGAAGUUAUUUUGUAUAUUUGAGCAUUAAAAACAGCAUAAUAUUCCUCCCAUGGCAUACCAAUCCAAGAAUACCGAUGAGCAUGUAACAUUUGCAGACGCACUCCUUUCAAAGCGUUAUCGCAAAGCACAAAACGACUUCCUCAAUCAGGUUGAGAGGCUUAUCGAUUGGCGUCCGAUCAGGACGCUGAUCAACAAGAAAUACACGAAGCGACAAAAUGCCAUCGGCGCCCCGGCUUAUGACGUGAUUCUCUUAUUCAAGAUGUUGCUUUUGGAGACAUGGUACAACCUCAGUGAUUGUGCUUUGGAGGAGCGCAUCAAUGAUUCAAUCACCUUUUCCCGAUUCUUGGGGCUAUGGAAGAGGUAUCUCCCGACCACAGCACCAUCAGUCGAUUUCGUUCGGCACUGACAGAGUUGGGGCUCAUGGACAAACUAUUGGCGCAGUUUAACAAACAACUUUCCCGCCAUCACAUUUCGGUCAGGGAAGGGGUGCUUGUCGAUGCAAGCCUUGUGGAGACGCCGCAUAAACCCAACGGAAGCAUUACGAUUGAAGUCGCAGACGACAGAGAAGACAAUCGGAGCGAGGAGGAAAAAGAGGCAGAGGAGGAUUAUCAAAAACAGGUUGUCCGUCAGCGUAAAGGGACGGAUGAAGAAGCCCGUUGGGUUUACAAACAAAAGCGUUAUCACUACGGAUACAAAAAGCAUUGUCCGACCAAUGUUCAAGGCAUUGUUCAAAAGGUGAUAACGACAGCAGCGAACCGCAGUGACACGAAGGAGUUUAUUCCGCUAUUGGAGGGUGCAAACAUACCUCAAGGCACAGCCGUCUUGGCGGACAAAGGAUAUGCUUGCGGGGAAAAUCGUUCCUACCUGCAAACCCAUCACCUUCAAGACGGCAUCAUGCACAAGGCACAACGCAACAGGGCAUUGACCGAGGAAGAGAAGCAAGGAAACAAAGCAAUCAGUCGGAUACGGAGCACCAUCGAACGCACCUUUGGCAGUAUUCGGCGGUGGUUUCAUGGCGGACGAUGUCGAUACCGGGGACUUGCCAAGACCCAUACUCAAAACAUUCUUGAAAGCAUCGCCUUUAAUUUAUACAGAACCCCGGGGAUAAUUAUGUCCUCAUCUCUAGGAUAAGGCAUACCCCCCCUUGAGGAGCUCGUGCAAGUAGCUCCGCAAGGGGGGAUUUACAACUACUUUCACUCCUUACUGCCACCCCUUUCACUCGCUCCUUUUAUGCCAAGAACUCCUCUUUACUCCAUCUCCUUAUUUUUCAAAGGUCUCCUUUUGGUCCAUACUUAUAGAUACUCCUUAGGUUGCAUUAUUUUUUACCGGUACAAGCCUUCGAAAGUAUUCAUGGUCAGAGCGGCAUAUAAUGAUUAAGACAUAUAAAAAUAAAUCCAUCAGCAAGAUUGGCCUUGCUGAUGGAUAAUUGUAGGAAGAGACAUACCAAGCGACGAAAUCGGCUGCUUGUCUCACUUGGCCGAUU .((((.((((((.((((((..(((..........)))..))))))......(((((((......))))))).))))))....(((((((.((((((((((((((((((((((((((((((((((...(((((....((((.......((((.(((((.(((((....))))).))))).))))..((..(((((.((..(((....(((((.((((((..............(((((((...)))))))...((..((((((..(((((.((.((((((.......)))))).......)).)))))))))))((.(((((((...(((.((((((((((((((......(((((((((.....((((........)))).................((((((.((..((((....(((((((....(......).....)))))))...))...))..)))))))).)))))))))))))))))))))))............(((((((..((((((...((((.(((......(((.(((..(((((......(((....)))......)))))...)))....)))......))).(((((............)))))....))))..))))))..)))))))......)))...(((((((...(((..((((((.....))))))..)))..................(((((...((((((.((.((((((((((.((...................((((.((((((.(((((............(((.((((.((((((.....)))))))))).))).......(((((((((....((....))....))))))))).))))).))....)))).)))).(((((......))))).....)))))))))))))))))).)).......(((((.(((.....)))..((((((((((..........)))..))))))).))))))))))....)))))))))))))).))..............))........)))))).)))))..)))..)).)))))......((((..(((((((......((((.(((((((...((((.......(..((((((..(.....).))))))..)....((((((((.(((............((((((((((.((((((..........))))))..((((((.....)))))).......))))))))))...((.(((...))).(((.((.((.((((....))))(((....(((((((....))).))))..)))...((((((((((.((......(((..(.(((((((..............))))))).)..))).)).)))))))))).)).)))))...))..))).)))).)))).)))).((((..((((..((..(....)...((......(((....))).))..........)).....((((((((...(((((((.(((((.((((.....))))......(((..((.....)).)))................))))).)))))))....................((((.....((((.(((.(((.....))).))))))).(((((((((.(((((((......).)))))).))))))))).................)))).))))))))...))))..)))).))))))).))))......)))))))..))))....)).............)))).....))))).................(((((....((((((......(((.(.(..(((...(((....)))..)))..)).)))...)))))).)))))......)))))))))))))))))))))))))))))))))).)))))))....)))).((((((.....((((.((....))..))))))))))............ (-621.84) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AAUCGGCCAAGUGAGACAAGCAGCCGAUUUCGUCGCUUGGUAUGUCUCUUCCUACAAUUAUCCAUCAGCAAGGCCAAUCUUGCUGAUGGAUUUAUUUUUAUAUGUCUUAAUCAUUAUAUGCCGCUCUGACCAUGAAUACUUUCGAAGGCUUGUACCGGUAAAAAAUAAUGCAACCUAAGGAGUAUCUAUAAGUAUGGACCAAAAGGAGACCUUUGAAAAAUAAGGAGAUGGAGUAAAGAGGAGUUCUUGGCAUAAAAGGAGCGAGUGAAAGGGGUGGCAGUAAGGAGUGAAAGUAGUUGUAAAUCCCCCCUUGCGGAGCUACUUGCACGAGCUCCUCAAGGGGGGGUAUGCCUUAUCCUAGAGAUGAGGACAUAAUUAUCCCCGGGGUUCUGUAUAAAUUAAAGGCGAUGCUUUCAAGAAUGUUUUGAGUAUGGGUCUUGGCAAGUCCCCGGUAUCGACAUCGUCCGCCAUGAAACCACCGCCGAAUACUGCCAAAGGUGCGUUCGAUGGUGCUCCGUAUCCGACUGAUUGCUUUGUUUCCUUGCUUCUCUUCCUCGGUCAAUGCCCUGUUGCGUUGUGCCUUGUGCAUGAUGCCGUCUUGAAGGUGAUGGGUUUGCAGGUAGGAACGAUUUUCCCCGCAAGCAUAUCCUUUGUCCGCCAAGACGGCUGUGCCUUGAGGUAUGUUUGCACCCUCCAAUAGCGGAAUAAACUCCUUCGUGUCACUGCGGUUCGCUGCUGUCGUUAUCACCUUUUGAACAAUGCCUUGAACAUUGGUCGGACAAUGCUUUUUGUAUCCGUAGUGAUAACGCUUUUGUUUGUAAACCCAACGGGCUUCUUCAUCCGUCCCUUUACGCUGACGGACAACCUGUUUUUGAUAAUCCUCCUCUGCCUCUUUUUCCUCCUCGCUCCGAUUGUCUUCUCUGUCGUCUGCGACUUCAAUCGUAAUGCUUCCGUUGGGUUUAUGCGGCGUCUCCACAAGGCUUGCAUCGACAAGCACCCCUUCCCUGACCGAAAUGUGAUGGCGGGAAAGUUGUUUGUUAAACUGCGCCAAUAGUUUGUCCAUGAGCCCCAACUCUGUCAGUGCCGAACGAAAUCGACUGAUGGUGCUGUGGUCGGGAGAUACCUCUUCCAUAGCCCCAAGAAUCGGGAAAAGGUGAUUGAAUCAUUGAUGCGCUCCUCCAAAGCACAAUCACUGAGGUUGUACCAUGUCUCCAAAAGCAACAUCUUGAAUAAGAGAAUCACGUCAUAAGCCGGGGCGCCGAUGGCAUUUUGUCGCUUCGUGUAUUUCUUGUUGAUCAGCGUCCUGAUCGGACGCCAAUCGAUAAGCCUCUCAACCUGAUUGAGGAAGUCGUUUUGUGCUUUGCGAUAACGCUUUGAAAGGAGUGCGUCUGCAAAUGUUACAUGCUCAUCGGUAUUCUUGGAUUGGUAUGCCAUGGGAGGAAUAUUAUGCUGUUUUUAAUGCUCAAAUAUACAAAAUAACUUCCUAUUAUACAAUGAAUUAACAAAUAAAAUGCAGGCCAAUUGCCGUGCAAAGGUCUCAAAAGCUGAAUUAACUUUUUUGACUGUCAGCUUAUUUAGUUCACAUCGGCAAGAUCUUGAAAGUCAUAUCCAUUUAGCCAUAUGGUUAGGUAGCCUACAGAAUAAUUUUACUUAUUAAUCGGUAUUGUGGAGAUGCAUGGCUGGCUAUACCUUUGCCAAUGUAAUAGUAACACAUUUGUUUAGCCAAAGCCAUUUGGUCUUAAUGAUGUAACCAUUAUAAAAGUGAUAAAUCGAUCGCAGUCGGUAGGACUUCAUAGAAAUACCGAAAAAGAGCACUUCUCCGGGAGGAAAGGUGCUUUUUUAUUUUACGUCUUGUAUAGUCUUAAAAAACAAAUCCACCAGCAAGACCGGCCUUACUGGUGGAUAAAAAUAUUGUACUAAAAGCCGUAGUGCUUUUAUUUGAUCAGAGAAAAUGUAUCGAUAGGCAUAAUCCCUACCACAAUGAGGAU ...((((.....(((((((.(((.((((...)))).))).).))))))....((((((((((((((((.((((((..((((((((.(((((((.(((((....................(((.........(((.(((((((...(((.(((((...((.....))..))))))))..))))))).)))..(((((((((....((((((..((((......(((((((((((..(.((((((.....((((....(((((.(((((((((((..((.(((((((((..(((((((((......(((((((((.((((((.(......))))))).))))))))).(((((((((((.....))))))).)))).......((((((...(((........(((((.((((..((((((...)))))))))).).)))).)))...))))))..(((....((..((((((..(((((((................)))).)))..))))))...))....)))..)))))))))..)))))))))..........((.....((((.((((....((((((((.((((...(((((((((..(((((.((((.(((..((.((((.....))))..))..))).)))).))).))..))))))))).))))..))))))))(((((((.....(((.((((((......)))....(((((((((((...((.((((((....(((.....))).(((((.......)))))....))))..)).....))..)))))))))))..))).)))..))))))).))))))))....))..))..)))))).))).(((((.....)))))........))))))).)))).....)))))).)..))))....)))))))..((((....)))).))))..)).....))))....))))))))).((((((((((((.(((((......)))))............(((((.((((((....((((...(((((((((((......((((.(((....(((((((((((......((((((..(((......)))))))))((.(((((((...((((....)))).))))))).)).......))).....(((((.........(((((((((((.((((((((((((.....))))))....((((....((((((.((...(((....((((............(((((((((.(((.......))).))))))).))....(((((((((..((((((.....))))))..)))))))))..))))..(((.....)))...)))...))))))))..))))..))))))..))))))))))).......)))))..)))))).)).))).))))....(((((..((((((((..((((.((.(((.(((.......))).))))).)))).)))))))))))))......)))))))))))..(((((((.....))).))))....))))..(((((((.((((.....))))...))))))).......)))))).(((..(((.......)))......((((((((....)))))))).))).......................))))).))))))))))))..))).((((((((...((((..((((((.((.(((((((......((((((....))))))...)))).))).)).))))))...(((((......)))))....)))).(((....((....))....((((((((((((.(((....))).)))))))))))).......)))..))))))))...))))).))))))).))))))))..)))))).)))))))))).....))))))......))))..((((((....(((((((.......)).))))).)))))).(((((.........).)))) (-631.78) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 1034 690 641 173 124 NC_002950:PG2058|5end_ISPg5,_transposase_Orf1_2156390..2156620_NEGATIVE 928 600 551 229 180 NC_002950:PG0459|5end_ISPg5,_transposase_Orf1_501894..502124_NEGATIVE 921 630 581 210 161 NC_002950:PG1350|5end_ISPg2,_transposase_1430866..1431096_POSITIVE 765 570 521 229 180 NC_002950:PG1447|5end_transcriptional_regulator,_AraC_family_1532211..1532441_NEGATIVE 765 570 521 229 180 NC_002950:PG0826|5end_transcriptional_regulator,_AraC_family_883221..883451_POSITIVE 656 1684 1644 108 68 NC_002950:PG0938|5end_calcium-transporting_ATPase_1000385..1000615_NEGATIVE 590 1682 1644 231 193 NC_002950:PG1176|5end_ABC_transporter,_ATP-binding_protein,_putative_1257644..1257874_NEGATIVE 572 555 511 231 187 NC_002950:PG1198|5end_hypothetical_protein_1276650..1276880_POSITIVE 558 500 451 227 178 NC_002950:PG0851|5end_hypothetical_protein_912732..912962_NEGATIVE 430 1527 1486 173 129 NC_002950:PG1536|5end_cell_division_protein_FtsX,_putative_1616362..1616592_POSITIVE 429 908 861 227 178 NC_002950:PG2225|5end_hypothetical_protein_2339440..2339670_POSITIVE 424 1540 1491 223 156 NC_002950:PG1623|5end_membrane_bound_regulatory_protein,_putative_1705365..1705595_NEGATIVE 423 1549 1505 227 173 NC_002950:PG2072|5end_UvrD/REP_helicase_domain_protein_2167369..2167599_POSITIVE 419 1540 1491 228 181 NC_002950:PG2032|5end_primosomal_protein_N'_2133381..2133611_NEGATIVE 417 1686 1643 110 64 NC_002950:PG1006|5end_hypothetical_protein_1066478..1066708_NEGATIVE 416 873 833 231 198 NC_002950:PG1946|5end_ABC_3_transporter_family_protein_2032133..2032363_POSITIVE 416 739 691 156 109 NC_002950:PG0043|5end_beta-hexosaminidase_51066..51296_POSITIVE 412 1430 1385 153 108 NC_002950:PG0744|5end_RNA_methyltransferase,_TrmH_family_791897..792127_NEGATIVE 409 1548 1503 124 74 NC_002950:PG2071|5end_hypothetical_protein_2166437..2166667_POSITIVE 408 1550 1505 221 170 NC_002950:PG2223|5end_glycosyl_transferase,_group_2_family_protein_2337713..2337943_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 996 1750 1701 59 10 NC_002950:PG1196|3end_hypothetical_protein_1275359..1275509_POSITIVE 919 1760 1711 52 3 NC_002950:PG1449|3end_hypothetical_protein_1533582..1533732_NEGATIVE 919 1760 1711 52 3 NC_002950:PG0824|3end_hypothetical_protein_881930..882080_POSITIVE 862 580 531 73 24 NC_002950:PG1350|3end_ISPg2,_transposase_1432076..1432226_POSITIVE 656 1684 1644 83 43 NC_002950:PG1906|3end_ISPg1,_transposase_2006572..2006722_POSITIVE 656 1684 1644 83 43 NC_002950:PG1624|3end_ISPg1,_transposase_1706188..1706338_NEGATIVE 656 1684 1644 83 43 NC_002950:PG1448|3end_ISPg1,_transposase_1533449..1533599_POSITIVE 656 1684 1644 83 43 NC_002950:PG1320|3end_ISPg1,_transposase,_internal_deletion_1399467..1399617_POSITIVE 656 1684 1644 83 43 NC_002950:PG1197|3end_ISPg1,_transposase_1275475..1275625_NEGATIVE 656 1684 1644 83 43 NC_002950:PG1177|3end_ISPg1,_transposase_1257794..1257944_NEGATIVE 656 1684 1644 83 43 NC_002950:PG1031|3end_ISPg1,_transposase_1093081..1093231_NEGATIVE 656 1684 1644 83 43 NC_002950:PG0825|3end_ISPg1,_transposase_882063..882213_NEGATIVE 656 1684 1644 83 43 NC_002950:PG0184|3end_ISPg1,_transposase_217567..217717_POSITIVE 598 1684 1644 83 43 NC_002950:PG1244|3end_ISPg1,_transposase_1320699..1320849_POSITIVE 598 1684 1644 83 43 NC_002950:PG0549|3end_ISPg1,_transposase_605987..606137_NEGATIVE 598 1684 1644 83 43 NC_002950:PG0460|3end_ISPg1,_transposase_503102..503252_POSITIVE 457 117 91 27 1 NC_002950:PG1559|3end_aminomethyltransferase_1637904..1638054_NEGATIVE 417 1515 1473 121 72 NC_002950:PG2159|3end_protoporphyrinogen_oxidase_2265874..2266024_POSITIVE 417 1686 1643 70 24 NC_002950:PG1007|3end_transcriptional_regulator,_GntR_family_1066518..1066668_NEGATIVE 414 1685 1643 125 71 NC_002950:PG0143|3end_hydrolase,_carbon-nitrogen_family_165747..165897_NEGATIVE