Origin IGS: tacgaggggaaacagagtaaggtgtgtaaatcagggctgttgcattagaaatcggatgatggtattccatgttcatagcccatttgtatatagacgtcagttcgacgtaagaaaagaccaatggtcatatcgcaaaatgccgtgcaatggtctctaataagcctctgggcgatgttgtacttcttcttgatggcatacttgctccggggctgccgaggtattcttccacaatgtgaagacgctcggaataggtcaaatgtttcgacatgattactgctttttttgacctctccgattccgtacacgtcagttcgtaaaaatggcggtttagcgtttggaaaaacgtggctcgggaattttttcgttttggcgtgggaagtaaaaattttacgcgccacaacggaaaaattctcgctcgtgaatctcagaaaactcgaaccgcattccggccaattccggaaccaaattcgtgaggaatctgcttacaacgtcagttcgacgtaagaaaaagccaatgaatttgttttctatatagtcgtcccttaaagaggttttttaagggacgactatatagagatagagaccttctcttttttcaaaggtctccttaagtgtaatgatccgccgagcaattgcacttggaaccggaatgtgcaagtatctctcattcatttgtattgcggtacgaatacattacctttgcgcgcaaaatcaaacccccatcaaccagaagg .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 ccttctggttgatgggggtttgattttgcgcgcaaaggtaatgtattcgtaccgcaatacaaatgaatgagagatacttgcacattccggttccaagtgcaattgctcggcggatcattacacttaaggagacctttgaaaaaagagaaggtctctatctctatatagtcgtcccttaaaaaacctctttaagggacgactatatagaaaacaaattcattggctttttcttacgtcgaactgacgttgtaagcagattcctcacgaatttggttccggaattggccggaatgcggttcgagttttctgagattcacgagcgagaatttttccgttgtggcgcgtaaaatttttacttcccacgccaaaacgaaaaaattcccgagccacgtttttccaaacgctaaaccgccatttttacgaactgacgtgtacggaatcggagaggtcaaaaaaagcagtaatcatgtcgaaacatttgacctattccgagcgtcttcacattgtggaagaatacctcggcagccccggagcaagtatgccatcaagaagaagtacaacatcgcccagaggcttattagagaccattgcacggcattttgcgatatgaccattggtcttttcttacgtcgaactgacgtctatatacaaatgggctatgaacatggaataccatcatccgatttctaatgcaacagccctgatttacacaccttactctgtttcccctcgta Mask Tandem Repeat Region ================================================ tacgaggggaaacagagtaaggtgtgtaaatcagggctgttgcattagaaatcggatgatggtattccatgttcatagcccatttgtatatagacgtcagttcgacgtaagaaaagaccaatggtcatatcgcaaaatgccgtgcaatggtctctaataagcctctgggcgatgttgtacttcttcttgatggcatacttgctccggggctgccgaggtattcttccacaatgtgaagacgctcggaataggtcaaatgtttcgacatgattactgctttttttgacctctccgattccgtacacgtcagttcgtaaaaatggcggtttagcgtttggaaaaacgtggctcgggaattttttcgttttggcgtgggaagtaaaaattttacgcgccacaacggaaaaattctcgctcgtgaatctcagaaaactcgaaccgcattccggccaattccggaaccaaattcgtgaggaatctgcttacaacgtcagttcgacgtaagaaaaagccaatgaatttgttttctatatagtcgtcccttaaagaggttttttaagggacgactatatagagatagagaccttctcttttttcaaaggtctccttaagtgtaatgatccgccgagcaattgcacttggaaccggaatgtgcaagtatctctcattcatttgtattgcggtacgaatacattacctttgcgcgcaaaatcaaacccccatcaaccagaagg Find is-nt database================================================ Query_seq: PG0753:PG0754|PG0753:PG0754:protease:DNA topoisomerase I:->->:800349..801082 734 tacgaggggaaacagagtaaggtgtgtaaatcagggctgttgcattagaaatcggatgatggtattccatgttcatagcccatttgtatatagacgtcagttcgacgtaagaaaagaccaatggtcatatcgcaaaatgccgtgcaatggtctctaataagcctctgggcgatgttgtacttcttcttgatggcatacttgctccggggctgccgaggtattcttccacaatgtgaagacgctcggaataggtcaaatgtttcgacatgattactgctttttttgacctctccgattccgtacacgtcagttcgtaaaaatggcggtttagcgtttggaaaaacgtggctcgggaattttttcgttttggcgtgggaagtaaaaattttacgcgccacaacggaaaaattctcgctcgtgaatctcagaaaactcgaaccgcattccggccaattccggaaccaaattcgtgaggaatctgcttacaacgtcagttcgacgtaagaaaaagccaatgaatttgttttctatatagtcgtcccttaaagaggttttttaagggacgactatatagagatagagaccttctcttttttcaaaggtctccttaagtgtaatgatccgccgagcaattgcacttggaaccggaatgtgcaagtatctctcattcatttgtattgcggtacgaatacattacctttgcgcgcaaaatcaaacccccatcaaccagaagg Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PG0753:PG0754|PG0753:PG0754:protease:DNA topoisomerase I:->->:800349..801082 734 tacgaggggaaacagagtaaggtgtgtaaatcagggctgttgcattagaaatcggatgatggtattccatgttcatagcccatttgtatatagacgtcagttcgacgtaagaaaagaccaatggtcatatcgcaaaatgccgtgcaatggtctctaataagcctctgggcgatgttgtacttcttcttgatggcatacttgctccggggctgccgaggtattcttccacaatgtgaagacgctcggaataggtcaaatgtttcgacatgattactgctttttttgacctctccgattccgtacacgtcagttcgtaaaaatggcggtttagcgtttggaaaaacgtggctcgggaattttttcgttttggcgtgggaagtaaaaattttacgcgccacaacggaaaaattctcgctcgtgaatctcagaaaactcgaaccgcattccggccaattccggaaccaaattcgtgaggaatctgcttacaacgtcagttcgacgtaagaaaaagccaatgaatttgttttctatatagtcgtcccttaaagaggttttttaagggacgactatatagagatagagaccttctcttttttcaaaggtctccttaagtgtaatgatccgccgagcaattgcacttggaaccggaatgtgcaagtatctctcattcatttgtattgcggtacgaatacattacctttgcgcgcaaaatcaaacccccatcaaccagaagg Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PG0753:PG0754|PG0753:PG0754:protease:DNA topoisomerase I:->->:800349..801082 734 tacgaggggaaacagagtaaggtgtgtaaatcagggctgttgcattagaaatcggatgatggtattccatgttcatagcccatttgtatatagacgtcagttcgacgtaagaaaagaccaatggtcatatcgcaaaatgccgtgcaatggtctctaataagcctctgggcgatgttgtacttcttcttgatggcatacttgctccggggctgccgaggtattcttccacaatgtgaagacgctcggaataggtcaaatgtttcgacatgattactgctttttttgacctctccgattccgtacacgtcagttcgtaaaaatggcggtttagcgtttggaaaaacgtggctcgggaattttttcgttttggcgtgggaagtaaaaattttacgcgccacaacggaaaaattctcgctcgtgaatctcagaaaactcgaaccgcattccggccaattccggaaccaaattcgtgaggaatctgcttacaacgtcagttcgacgtaagaaaaagccaatgaatttgttttctatatagtcgtcccttaaagaggttttttaagggacgactatatagagatagagaccttctcttttttcaaaggtctccttaagtgtaatgatccgccgagcaattgcacttggaaccggaatgtgcaagtatctctcattcatttgtattgcggtacgaatacattacctttgcgcgcaaaatcaaacccccatcaaccagaagg Intra-Species Hit: Count: 0 Inter-species Hit: Count: 1 Min: 246 Max: 486 Len: 241 Subject: UniRef90_Q7MTP3 Cluster: Hypothetical protein; n=1; Porphyromonas gingivalis|Rep: Hypothetical protein - Porphyromonas gingivalis (Bacteroides gingivalis) HSP 1 e-value: 2.0E-31 bit: 116.0 Len: 177 Query Start:310 Query End:486 Subject Strand: null Subject Start: 23 Subject End: 81 ..................................................................................................................................................................................................................................................................................................................... V R K N G G L A F G K T W L G N F F V L A W E V K I L R A T T E K F S L V N L R K L E P H S G Q F R N Q I R E E S A Y ........................................................................................................................................................................................................................................................ ..................................................................................................................................................................................................................................................................................................................... V R K N G G L A F G K T W L G N F F V L V R E V K I L R A T T E K F S L V N L R K L E P H S G Q F R N Q I R E E S A Y ........................................................................................................................................................................................................................................................ HSP 2 e-value: 2.0E-31 bit: 43.5 Len: 63 Query Start:246 Query End:308 Subject Strand: null Subject Start: 2 Subject End: 22 ..................................................................................................................................................................................................................................................... E * V K C F D M I T A F F D L S D S V H V .......................................................................................................................................................................................................................................................................................................................................................................................................................................... ..................................................................................................................................................................................................................................................... E S V K C F D M I T A F F D L S D S V H V .......................................................................................................................................................................................................................................................................................................................................................................................................................................... tacgaggggaaacagagtaaggtgtgtaaatcagggctgttgcattagaaatcggatgatggtattccatgttcatagcccatttgtatatagacgtcagttcgacgtaagaaaagaccaatggtcatatcgcaaaatgccgtgcaatggtctctaataagcctctgggcgatgttgtacttcttcttgatggcatacttgctccggggctgccgaggtattcttccacaatgtgaagacgctcgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacgtcagttcgacgtaagaaaaagccaatgaatttgttttctatatagtcgtcccttaaagaggttttttaagggacgactatatagagatagagaccttctcttttttcaaaggtctccttaagtgtaatgatccgccgagcaattgcacttggaaccggaatgtgcaagtatctctcattcatttgtattgcggtacgaatacattacctttgcgcgcaaaatcaaacccccatcaaccagaagg Predict ORF larger than 30AA ================================================ Protein_Len: 37 Strand: + Start: 44 End: 154 ........................................... M R N R M M V F H V H S P F V Y R R Q F D V R K D Q W S Y R K M P C N G L .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 35 Strand: + Start: 129 End: 233 ................................................................................................................................ M A K C R A M V S N K P L G D V V L L L D G I L A P G L P R Y S S T M ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 49 Strand: + Start: 121 End: 267 ........................................................................................................................ M V I S Q N A V Q W S L I S L W A M L Y F F L M A Y L L R G C R G I L P Q C E D A R N R S N V S T ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 42 Strand: + Start: 345 End: 470 ........................................................................................................................................................................................................................................................................................................................................................ M A R E F F R F G V G S K N F T R H N G K I L A R E S Q K T R T A F R P I P E P N S ........................................................................................................................................................................................................................................................................ Protein_Len: 60 Strand: + Start: 274 End: 501 ................................................................................................................................................................................................................................................................................. M L F L T S P I P Y T S V R K N G G L A F G K T W L G N F F V L A W E V K I L R A T T E K F S L V N L R K L E P H S G Q ......................................................................................................................................................................................................................................... Protein_Len: 37 Strand: + Start: 422 End: 532 ..................................................................................................................................................................................................................................................................................................................................................................................................................................... M S E N S N R I P A N S G T K F V R N L L T T S V R R K K K P M N L F S I .......................................................................................................................................................................................................... Protein_Len: 30 Strand: + Start: 519 End: 608 ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M C F L Y S R P L K R F F K G R L Y R D R D L L F F Q R S P .............................................................................................................................. Protein_Len: 54 Strand: + Start: 571 End: 732 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M E I E T F S F F K G L L K C N D P P S N C T W N R N V Q V S L I H L Y C G T N T L P L R A K S N P H Q P E .. Protein_Len: 39 Strand: + Start: 617 End: 733 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ M I R R A I A L G T G M C K Y L S F I C I A V R I H Y L C A Q N Q T P I N Q K . Protein_Len: 34 Strand: + Start: 633 End: 734 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ M H L E P E C A S I S H S F V L R Y E Y I T F A R K I K P P S T R R Protein_Len: 33 Strand: - Start: 570 End: 668 ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... I S I S V K E K K L P R R L H L S G G L L Q V Q F R F T C T D R M .................................................................. Protein_Len: 44 Strand: - Start: 559 End: 690 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. P V V I Y L Y L G E R K E F T E K L T I I R R A I A S P V P I H L Y R E N M Q I A T R M ............................................ Protein_Len: 47 Strand: - Start: 391 End: 531 ...................................................................................................................................................................................................................................................................................................................................................................................................... A G C R F F E R E H I E S F E F R M G A L E P V L N T L F R S V V D T R R L F F G I F K N E M ........................................................................................................................................................................................................... Protein_Len: 31 Strand: - Start: 157 End: 249 ............................................................................................................................................................ Y A E P R H Q V E E Q H C V Q E P A A S T N K W L T F V S P M ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 128 End: 409 ............................................................................................................................... I H L R E S Y T L H K S M I V A K K S R E S E T C T L E Y F H R N L T Q F F T A R S N K R K P T P L L F K V R W L P F M ..................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 48 End: 467 ............................................... E G I G Y V D T R L F P P K A N P F V H S P F K K T K A H S T F I K R A V V S F N E S T F R L F S S G C E P W N R F W M ........................................................................................................................................................................................................................................................................... Protein_Len: 40 Strand: - Start: 2 End: 121 . R P S V S Y P T Y I L A T A N S I P H H Y E M N M A W K Y I S T L E V Y S F V M ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... tacgaggggaaacagagtaaggtgtgtaaatcagggctgttgcattagaaatcggatgatggtattccatgttcatagcccatttgtatatagacgtcagttcgacgtaagaaaagaccaatggtcatatcgcaaaatgccgtgcaatggtctctaataagcctctgggcgatgttgtacttcttcttgatggcatacttgctccggggctgccgaggtattcttccacaatgtgaagacgctcgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacgtcagttcgacgtaagaaaaagccaatgaatttgttttctatatagtcgtcccttaaagaggttttttaagggacgactatatagagatagagaccttctcttttttcaaaggtctccttaagtgtaatgatccgccgagcaattgcacttggaaccggaatgtgcaagtatctctcattcatttgtattgcggtacgaatacattacctttgcgcgcaaaatcaaacccccatcaaccagaagg Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ tacgaggggaaacagagtaaggtgtgtaaatcagggctgttgcattagaaatcggatgatggtattccatgttcatagcccatttgtatatagacgtcagttcgacgtaagaaaagaccaatggtcatatcgcaaaatgccgtgcaatggtctctaataagcctctgggcgatgttgtacttcttcttgatggcatacttgctccggggctgccgaggtattcttccacaatgtgaagacgctcgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacgtcagttcgacgtaagaaaaagccaatgaatttgttttctatatagtcgtcccttaaagaggttttttaagggacgactatatagagatagagaccttctcttttttcaaaggtctccttaagtgtaatgatccgccgagcaattgcacttggaaccggaatgtgcaagtatctctcattcatttgtattgcggtacgaatacattacctttgcgcgcaaaatcaaacccccatcaaccagaagg Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 79 HP_score: -6.8 Tail_Score: -4.67982 Start: 116 End: 126 Full_Region: ggcattttgcgatat gacc att ggtc ttttcttacgtcgaa ...................................................................................................................gaccattggtc................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ TransTerm Strand: + Conf: 85 HP_score: -11.8 Tail_Score: -3.37975 Start: 357 End: 408 Full_Region: AACGTGGCTCGGGAA TTTTTTCGTTTTGGCGTGGGAAGT AAAA ATTTTACGCGCCACAACGGAAAAA TTCTCGCTCGTGAAT ....................................................................................................................................................................................................................................................................................................................................................................TTTTTTCGTTTTGGCGTGGGAAGTAAAAATTTTACGCGCCACAACGGAAAAA...................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 40 HP_score: -2.5 Tail_Score: -2.54632 Start: 435 End: 470 Full_Region: taagcagattcctca cgaatttggttccgg aattgg ccggaatgcggttcg agttttctgagattc ..................................................................................................................................................................................................................................................................................................................................................................................................................................................cgaatttggttccggaattggccggaatgcggttcg........................................................................................................................................................................................................................................................................ TransTerm Strand: + Conf: 100 HP_score: -18.7 Tail_Score: -2.88544 Start: 535 End: 567 Full_Region: TTTGTTTTCTATATA GTCGTCCCTTAAAGA GGT TTTTTAAGGGACGAC TATATAGAGATAGAG ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGTCCCTTAAAGAGGTTTTTTAAGGGACGAC....................................................................................................................................................................... TransTerm Strand: - Conf: 100 HP_score: -16.5 Tail_Score: -2.87132 Start: 535 End: 567 Full_Region: ctctatctctatata gtcgtcccttaaaaa acc tctttaagggacgac tatatagaaaacaaa ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gtcgtcccttaaaaaacctctttaagggacgac....................................................................................................................................................................... TransTerm Strand: + Conf: 72 HP_score: -3.2 Tail_Score: -5.00616 Start: 541 End: 551 Full_Region: TTCTATATAGTCGTC CCTT AAA GAGG TTTTTTAAGGGACGA ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTAAAGAGG....................................................................................................................................................................................... TransTerm Strand: + Conf: 78 HP_score: -5.4 Tail_Score: -5.02476 Start: 580 End: 590 Full_Region: GACTATATAGAGATA GAGA CCT TCTC TTTTTTCAAAGGTCT ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGACCTTCTC................................................................................................................................................ Find igs database================================================ Query_seq: PG0753:PG0754|PG0753:PG0754:protease:DNA topoisomerase I:->->:800349..801082 734 tacgaggggaaacagagtaaggtgtgtaaatcagggctgttgcattagaaatcggatgatggtattccatgttcatagcccatttgtatatagacgtcagttcgacgtaagaaaagaccaatggtcatatcgcaaaatgccgtgcaatggtctctaataagcctctgggcgatgttgtacttcttcttgatggcatacttgctccggggctgccgaggtattcttccacaatgtgaagacgctcgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacgtcagttcgacgtaagaaaaagccaatgaatttgttttctatatagtcgtcccttaaagaggttttttaagggacgactatatagagatagagaccttctcttttttcaaaggtctccttaagtgtaatgatccgccgagcaattgcacttggaaccggaatgtgcaagtatctctcattcatttgtattgcggtacgaatacattacctttgcgcgcaaaatcaaacccccatcaaccagaagg Intra-Species Hit: Count: 2 Min: 1 Max: 734 Len: 734 Subject: NC_002950_PG0753_PG0754|protease:DNA topoisomerase I|POSITIVE:POSITIVE|[800349,801082]|734 HSP 1 e-value: 1.0E-138 bit: 492.0 Len: 248 Query Start:487 Query End:734 Subject Strand: POSITIVE Subject Start: 487 Subject End: 734 ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................aacgtcagttcgacgtaagaaaaagccaatgaatttgttttctatatagtcgtcccttaaagaggttttttaagggacgactatatagagatagagaccttctcttttttcaaaggtctccttaagtgtaatgatccgccgagcaattgcacttggaaccggaatgtgcaagtatctctcattcatttgtattgcggtacgaatacattacctttgcgcgcaaaatcaaacccccatcaaccagaagg ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................aacgtcagttcgacgtaagaaaaagccaatgaatttgttttctatatagtcgtcccttaaagaggttttttaagggacgactatatagagatagagaccttctcttttttcaaaggtctccttaagtgtaatgatccgccgagcaattgcacttggaaccggaatgtgcaagtatctctcattcatttgtattgcggtacgaatacattacctttgcgcgcaaaatcaaacccccatcaaccagaagg HSP 2 e-value: 1.0E-135 bit: 484.0 Len: 244 Query Start:1 Query End:244 Subject Strand: POSITIVE Subject Start: 1 Subject End: 244 tacgaggggaaacagagtaaggtgtgtaaatcagggctgttgcattagaaatcggatgatggtattccatgttcatagcccatttgtatatagacgtcagttcgacgtaagaaaagaccaatggtcatatcgcaaaatgccgtgcaatggtctctaataagcctctgggcgatgttgtacttcttcttgatggcatacttgctccggggctgccgaggtattcttccacaatgtgaagacgctc.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... tacgaggggaaacagagtaaggtgtgtaaatcagggctgttgcattagaaatcggatgatggtattccatgttcatagcccatttgtatatagacgtcagttcgacgtaagaaaagaccaatggtcatatcgcaaaatgccgtgcaatggtctctaataagcctctgggcgatgttgtacttcttcttgatggcatacttgctccggggctgccgaggtattcttccacaatgtgaagacgctc.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 3 e-value: 5.0E-7 bit: 58.0 Len: 49 Query Start:527 Query End:575 Subject Strand: NEGATIVE Subject Start: 527 Subject End: 575 ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tctatatagtcgtcccttaaagaggttttttaagggacgactatataga............................................................................................................................................................... ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tctatatagtcgtcccttaaaaaacctctttaagggacgactatataga............................................................................................................................................................... Subject: NC_002950_PG1398_PG1401|hypothetical protein:beta-eliminating lyase|POSITIVE:NEGATIVE|[1481008,1483488]|2481 HSP 1 e-value: 4.0E-60 bit: 234.0 Len: 137 Query Start:108 Query End:244 Subject Strand: POSITIVE Subject Start: 255 Subject End: 392 ...........................................................................................................taagaaaagaccaatggtcatatcgcaaaa-tgccgtgcaatggtctctaataagcctctgggcgatgttgtacttcttcttgatggcatacttgctccggggctgccgaggtattcttccacaatgtgaagacgctc.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ...........................................................................................................taagaaaagaccaatggtcatatcgcaaaaatgccgtacaatggtctctaataagcccctgggcgatgttgtacttcttctcgatggcatacttgctccggggctgccgaggtattcttccacaatgtgaagacgctc.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UACGAGGGGAAACAGAGUAAGGUGUGUAAAUCAGGGCUGUUGCAUUAGAAAUCGGAUGAUGGUAUUCCAUGUUCAUAGCCCAUUUGUAUAUAGACGUCAGUUCGACGUAAGAAAAGACCAAUGGUCAUAUCGCAAAAUGCCGUGCAAUGGUCUCUAAUAAGCCUCUGGGCGAUGUUGUACUUCUUCUUGAUGGCAUACUUGCUCCGGGGCUGCCGAGGUAUUCUUCCACAAUGUGAAGACGCUCGGAAUAGGUCAAAUGUUUCGACAUGAUUACUGCUUUUUUUGACCUCUCCGAUUCCGUACACGUCAGUUCGUAAAAAUGGCGGUUUAGCGUUUGGAAAAACGUGGCUCGGGAAUUUUUUCGUUUUGGCGUGGGAAGUAAAAAUUUUACGCGCCACAACGGAAAAAUUCUCGCUCGUGAAUCUCAGAAAACUCGAACCGCAUUCCGGCCAAUUCCGGAACCAAAUUCGUGAGGAAUCUGCUUACAACGUCAGUUCGACGUAAGAAAAAGCCAAUGAAUUUGUUUUCUAUAUAGUCGUCCCUUAAAGAGGUUUUUUAAGGGACGACUAUAUAGAGAUAGAGACCUUCUCUUUUUUCAAAGGUCUCCUUAAGUGUAAUGAUCCGCCGAGCAAUUGCACUUGGAACCGGAAUGUGCAAGUAUCUCUCAUUCAUUUGUAUUGCGGUACGAAUACAUUACCUUUGCGCGCAAAAUCAAACCCCCAUCAACCAGAAGG ...((((((.....((.....(((((((((...(((((((.((((..((.((((.....)))).))..))))..)))))))...(((((....(((((.....))))).......((((...)))).(((((((..((((.(((.((((..........((((((.((((((.(((((...((.....))..))).)))))))).))))))...(((((((((((((.....).)))))...(((((..((((((((.((.((.....)).....))....)))))))).)))))....(((((..((.((((.........(((((((((..((((((...(((.(((..(((((((((((((((.(((((((..((((....))))..))))))).)))))))))))))))))))))...)).))))...)).))))))).((((((......)))))).(((((((((..((......(((((..((......))..)))))......)).))))))))).(((((((((((((((((((((((((...)))))))))))))))))))))))))..((((((((...........))))))))..((((((((((..((....))...)))))))))))))).))..)))))..))))))).)))))))..)))))))))))...))))).....)))))))))....))....)))).)).......... (-248.90) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ CCUUCUGGUUGAUGGGGGUUUGAUUUUGCGCGCAAAGGUAAUGUAUUCGUACCGCAAUACAAAUGAAUGAGAGAUACUUGCACAUUCCGGUUCCAAGUGCAAUUGCUCGGCGGAUCAUUACACUUAAGGAGACCUUUGAAAAAAGAGAAGGUCUCUAUCUCUAUAUAGUCGUCCCUUAAAAAACCUCUUUAAGGGACGACUAUAUAGAAAACAAAUUCAUUGGCUUUUUCUUACGUCGAACUGACGUUGUAAGCAGAUUCCUCACGAAUUUGGUUCCGGAAUUGGCCGGAAUGCGGUUCGAGUUUUCUGAGAUUCACGAGCGAGAAUUUUUCCGUUGUGGCGCGUAAAAUUUUUACUUCCCACGCCAAAACGAAAAAAUUCCCGAGCCACGUUUUUCCAAACGCUAAACCGCCAUUUUUACGAACUGACGUGUACGGAAUCGGAGAGGUCAAAAAAAGCAGUAAUCAUGUCGAAACAUUUGACCUAUUCCGAGCGUCUUCACAUUGUGGAAGAAUACCUCGGCAGCCCCGGAGCAAGUAUGCCAUCAAGAAGAAGUACAACAUCGCCCAGAGGCUUAUUAGAGACCAUUGCACGGCAUUUUGCGAUAUGACCAUUGGUCUUUUCUUACGUCGAACUGACGUCUAUAUACAAAUGGGCUAUGAACAUGGAAUACCAUCAUCCGAUUUCUAAUGCAACAGCCCUGAUUUACACACCUUACUCUGUUUCCCCUCGUA .(((((..(((((((..(((((...(((((.(....((........))...))))))..))))).........((((((((....(((((..(..((..(((.((.((((((....(((((......((((((((((.........))))))))))...(((((((((((((((((((((.......)))))))))))))))))))))...........(((((((((((..(((((.....)))))........((((((.((((...(..((((.((((.((((.((.....((((((.((((..((.....)).))))..((((((((.((((.(((((.(..((........))..).))))).)))).)))))))).)))))).(((((....))))).....)))))).))))..))))..)))))...)))))))))))))))))........)))))..))))))..)).)))..))...(((((..(((((........)))))....)))))..)..))))))))))))).)))))))..)))))............(((.(((((((((((((.(....((..((..((((.((...((((...))))...))..(((((.....))))).......))))...))..))...((((....)))).....).)))))))))....)))))))............................... (-218.40) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 649 399 351 163 115 NC_002950:PG2063|5end_hypothetical_protein_2160596..2160826_NEGATIVE 558 387 341 139 92 NC_002950:PG0132|5end_hypothetical_protein_152879..153109_POSITIVE 539 378 331 71 21 NC_002950:PG1980|5end_hypothetical_protein_2067930..2068160_NEGATIVE 520 378 332 49 9 NC_002950:PG1799|5end_hypothetical_protein_1894499..1894729_POSITIVE 452 440 391 131 82 NC_002950:PG1617|5end_hypothetical_protein_1697755..1697985_NEGATIVE 438 370 322 85 15 NC_002950:PG0007|5end_hypothetical_protein_6913..7143_NEGATIVE 405 377 339 163 125 NC_002950:PG0081|5end_hypothetical_protein_93805..94035_POSITIVE 398 219 171 222 156 NC_002950:PG0201|5end_ribonuclease_P_238770..239000_NEGATIVE 384 477 431 103 51 NC_002950:PG1482|5end_conjugative_transposon_protein_TraF_1558779..1559009_NEGATIVE 379 216 173 174 138 NC_002950:PG1968|5end_hypothetical_protein_2058564..2058794_NEGATIVE 378 649 601 219 173 NC_002950:PG1254|5end_acetyltransferase,_GNAT_family_1332121..1332351_NEGATIVE 376 210 163 180 128 NC_002950:PG1485|5end_conjugative_transposon_protein_TraC_1560370..1560600_NEGATIVE 374 459 411 197 144 NC_002950:PG1057|5end_hypothetical_protein_1123419..1123649_POSITIVE 371 245 201 45 7 NC_002950:PG0362|5end_hypothetical_protein_395301..395531_POSITIVE 370 247 201 76 19 NC_002950:PG1675|5end_hypothetical_protein_1760182..1760412_POSITIVE 370 247 203 204 163 NC_002950:PG1640|5end_DNA-damage-inducible_protein_F_1721245..1721475_NEGATIVE 365 246 202 68 2 NC_002950:PG0097|5end_hypothetical_protein_115748..115978_NEGATIVE 363 250 201 56 1 NC_002950:PG1544|5end_hypothetical_protein_1622592..1622822_POSITIVE 363 246 202 230 181 NC_002950:PG0678|5end_pyrazinamidase/nicotinamidase,_putative_728879..729109_POSITIVE 362 226 184 231 189 NC_002950:PG1392|5end_rod_shape-determining_protein_RodA,_putative_1474416..1474646_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 567 415 373 46 4 NC_002950:PG0542|3end_hypothetical_protein_595377..595527_NEGATIVE 461 415 372 81 38 NC_002950:PG0732|3end_hypothetical_protein_783018..783168_POSITIVE 419 280 238 72 28 NC_002950:PG0294|3end_glycosyl_transferase,_group_2_family_protein_329271..329421_NEGATIVE 407 563 521 111 64 NC_002950:PG1549|3end_hypothetical_protein_1627807..1627957_NEGATIVE 396 218 189 151 120 NC_002950:PG1859|3end_glycerate_kinase_family_protein_1957174..1957324_NEGATIVE 384 477 431 99 47 NC_002950:PG1483|3end_conjugative_transposon_protein_TraE_1558783..1558933_NEGATIVE 379 216 173 125 89 NC_002950:PG1969|3end_hypothetical_protein_2058613..2058763_NEGATIVE 371 245 201 145 107 NC_002950:PG0361|3end_hypothetical_protein_395481..395631_POSITIVE 371 247 201 126 73 NC_002950:PG0210|3end_precorrin-6x_reductase/cobalamin_biosynthetic_protein_CbiD_244161..244311_NEGATIVE 370 220 171 56 10 NC_002950:PG1618|3end_hypothetical_protein_1698669..1698819_POSITIVE 366 217 171 75 30 NC_002950:PG1942|3end_30S_ribosomal_protein_S12_2027946..2028096_NEGATIVE 366 210 161 141 99 NC_002950:PG0223|3end_exonuclease_257119..257269_NEGATIVE 365 218 173 64 14 NC_002950:PG1391|3end_hypothetical_protein_1472961..1473111_POSITIVE 365 375 335 124 77 NC_002950:PG1145|3end_long-chain-fatty-acid--CoA_ligase,_putative_1228482..1228632_NEGATIVE 365 246 202 71 5 NC_002950:PG0098|3end_hypothetical_protein_115745..115895_NEGATIVE 363 210 161 131 75 NC_002950:PG2047|3end_helicase,_putative_2145758..2145908_NEGATIVE 362 370 323 109 62 NC_002950:PG1718|3end_hypothetical_protein_1806532..1806682_NEGATIVE 362 210 161 65 11 NC_002950:PG0203|3end_hypothetical_protein_239504..239654_NEGATIVE 361 590 546 99 52 NC_002950:PG0462|3end_transporter,_putative_504876..505026_NEGATIVE 357 248 201 118 68 NC_002950:PG0272|3end_CBS_domain_protein_305738..305888_POSITIVE