Origin IGS: tgcacggtaaaagtacaaattggcgttgaagcacggtcttttctgtcgaatgtctcaatcgagactgttgcaggggattttcattgaactctttttccgcagagctgattctttgtgccttcgtgaaaggttaaacctccaggacatgagcaccgagcaaatagatatttcccccagtttctttcataggtgtatacttgaggtttgcagagatccgcatgaagcattcctttcttcgtcaaa .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 tttgacgaagaaaggaatgcttcatgcggatctctgcaaacctcaagtatacacctatgaaagaaactgggggaaatatctatttgctcggtgctcatgtcctggaggtttaacctttcacgaaggcacaaagaatcagctctgcggaaaaagagttcaatgaaaatcccctgcaacagtctcgattgagacattcgacagaaaagaccgtgcttcaacgccaatttgtacttttaccgtgca Mask Tandem Repeat Region ================================================ tgcacggtaaaagtacaaattggcgttgaagcacggtcttttctgtcgaatgtctcaatcgagactgttgcaggggattttcattgaactctttttccgcagagctgattctttgtgccttcgtgaaaggttaaacctccaggacatgagcaccgagcaaatagatatttcccccagtttctttcataggtgtatacttgaggtttgcagagatccgcatgaagcattcctttcttcgtcaaa Find is-nt database================================================ Query_seq: PG0747:PG0749|PG0747:PG0749:sigma-54 dependent DNA-binding response regulator:hypothetical protein:<-<-:795385..795627 243 tgcacggtaaaagtacaaattggcgttgaagcacggtcttttctgtcgaatgtctcaatcgagactgttgcaggggattttcattgaactctttttccgcagagctgattctttgtgccttcgtgaaaggttaaacctccaggacatgagcaccgagcaaatagatatttcccccagtttctttcataggtgtatacttgaggtttgcagagatccgcatgaagcattcctttcttcgtcaaa Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PG0747:PG0749|PG0747:PG0749:sigma-54 dependent DNA-binding response regulator:hypothetical protein:<-<-:795385..795627 243 tgcacggtaaaagtacaaattggcgttgaagcacggtcttttctgtcgaatgtctcaatcgagactgttgcaggggattttcattgaactctttttccgcagagctgattctttgtgccttcgtgaaaggttaaacctccaggacatgagcaccgagcaaatagatatttcccccagtttctttcataggtgtatacttgaggtttgcagagatccgcatgaagcattcctttcttcgtcaaa Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PG0747:PG0749|PG0747:PG0749:sigma-54 dependent DNA-binding response regulator:hypothetical protein:<-<-:795385..795627 243 tgcacggtaaaagtacaaattggcgttgaagcacggtcttttctgtcgaatgtctcaatcgagactgttgcaggggattttcattgaactctttttccgcagagctgattctttgtgccttcgtgaaaggttaaacctccaggacatgagcaccgagcaaatagatatttcccccagtttctttcataggtgtatacttgaggtttgcagagatccgcatgaagcattcctttcttcgtcaaa Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 tgcacggtaaaagtacaaattggcgttgaagcacggtcttttctgtcgaatgtctcaatcgagactgttgcaggggattttcattgaactctttttccgcagagctgattctttgtgccttcgtgaaaggttaaacctccaggacatgagcaccgagcaaatagatatttcccccagtttctttcataggtgtatacttgaggtttgcagagatccgcatgaagcattcctttcttcgtcaaa Predict ORF larger than 30AA ================================================ Protein_Len: 60 Strand: + Start: 20 End: 241 ................... M A L K H G L F C R M S Q S R L L Q G I F I E L F F R R A D S L C L R E R L N L Q D M S T E Q I D I S P S F F H R C I L .. Protein_Len: 53 Strand: - Start: 84 End: 242 ................................................................................... Q V R K G C L Q N K T G E H F T L G G P C S C R A F L Y K G W N R E Y T Y V Q P K C L D A H L M G K K T M . Protein_Len: 40 Strand: - Start: 58 End: 177 ......................................................... D L S N C P I K M S S K K R L A S E K H R R S L N F R W S M L V S C I S I E G M .................................................................. Protein_Len: 36 Strand: - Start: 2 End: 109 . C P L L V F Q R Q L V T K E T S H R L R S Q Q L P N E N F E K E A S S M ...................................................................................................................................... tgcacggtaaaagtacaaattggcgttgaagcacggtcttttctgtcgaatgtctcaatcgagactgttgcaggggattttcattgaactctttttccgcagagctgattctttgtgccttcgtgaaaggttaaacctccaggacatgagcaccgagcaaatagatatttcccccagtttctttcataggtgtatacttgaggtttgcagagatccgcatgaagcattcctttcttcgtcaaa Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ tgcacggtaaaagtacaaattggcgttgaagcacggtcttttctgtcgaatgtctcaatcgagactgttgcaggggattttcattgaactctttttccgcagagctgattctttgtgccttcgtgaaaggttaaacctccaggacatgagcaccgagcaaatagatatttcccccagtttctttcataggtgtatacttgaggtttgcagagatccgcatgaagcattcctttcttcgtcaaa Predict TransTerm conf > 70================================================ Find igs database================================================ Query_seq: PG0747:PG0749|PG0747:PG0749:sigma-54 dependent DNA-binding response regulator:hypothetical protein:<-<-:795385..795627 243 tgcacggtaaaagtacaaattggcgttgaagcacggtcttttctgtcgaatgtctcaatcgagactgttgcaggggattttcattgaactctttttccgcagagctgattctttgtgccttcgtgaaaggttaaacctccaggacatgagcaccgagcaaatagatatttcccccagtttctttcataggtgtatacttgaggtttgcagagatccgcatgaagcattcctttcttcgtcaaa Intra-Species Hit: Count: 11 Min: 1 Max: 243 Len: 243 Subject: NC_002950_PG0747_PG0749|sigma-54 dependent DNA-binding response regulator:hypothetical protein|NEGATIVE:NEGATIVE|[795385,795627]|243 HSP 1 e-value: 1.0E-135 bit: 482.0 Len: 243 Query Start:1 Query End:243 Subject Strand: POSITIVE Subject Start: 1 Subject End: 243 tgcacggtaaaagtacaaattggcgttgaagcacggtcttttctgtcgaatgtctcaatcgagactgttgcaggggattttcattgaactctttttccgcagagctgattctttgtgccttcgtgaaaggttaaacctccaggacatgagcaccgagcaaatagatatttcccccagtttctttcataggtgtatacttgaggtttgcagagatccgcatgaagcattcctttcttcgtcaaa tgcacggtaaaagtacaaattggcgttgaagcacggtcttttctgtcgaatgtctcaatcgagactgttgcaggggattttcattgaactctttttccgcagagctgattctttgtgccttcgtgaaaggttaaacctccaggacatgagcaccgagcaaatagatatttcccccagtttctttcataggtgtatacttgaggtttgcagagatccgcatgaagcattcctttcttcgtcaaa Subject: NC_002950_PG0205_PG0209|peptide chain release factor 3:formate/nitrite transporter|NEGATIVE:POSITIVE|[242184,243370]|1187 HSP 1 e-value: 5.0E-35 bit: 149.0 Len: 183 Query Start:61 Query End:243 Subject Strand: POSITIVE Subject Start: 293 Subject End: 475 ............................................................gagactgttgcaggggattttcattgaactctttttccgcagagctgattctttgtgccttcgtgaaaggttaaacctccaggacatgagcaccgagcaaatagatatttcccccagtttctttcataggtgtatacttgaggtttgcagagatccgcatgaagcattcctttcttcgtcaaa ............................................................gagactgttacacgggatttttattgaactcttttgctgcagagctgattcttagtgcctttgggaaagatcaaacctccggtatatggacatcgagcaaacagaaatttccccaagtttctttcagaggtggatacttgaggttcgcagagactcacatgaagcactccttttttcgtcaaa HSP 2 e-value: 1.0E-7 bit: 58.0 Len: 49 Query Start:195 Query End:243 Subject Strand: POSITIVE Subject Start: 874 Subject End: 921 ..................................................................................................................................................................................................tacttgaggtttgcagagatccgcatgaagcattcctttcttcgtcaaa ..................................................................................................................................................................................................tacttgaggttcgcagagatc-gcatgaagcagtcctctcttcgtcaaa HSP 3 e-value: 2.0E-6 bit: 54.0 Len: 35 Query Start:79 Query End:113 Subject Strand: POSITIVE Subject Start: 824 Subject End: 858 ..............................................................................tttcattgaactctttttccgcagagctgattctt.................................................................................................................................. ..............................................................................tttcattgaagtcttttgccgcagagctgattctt.................................................................................................................................. Subject: NC_002950_PG0639_PG0645|signal peptide peptidase SppA, 67K type:hypothetical protein|NEGATIVE:NEGATIVE|[693091,696972]|3882 HSP 1 e-value: 5.0E-29 bit: 129.0 Len: 121 Query Start:61 Query End:181 Subject Strand: NEGATIVE Subject Start: 1320 Subject End: 1440 ............................................................gagactgttgcaggggattttcattgaactctttttccgcagagctgattctttgtgccttcgtgaaaggttaaacctccaggacatgagcaccgagcaaatagatatttcccccagtttc.............................................................. ............................................................gagactgttgcaggggattttcattgaactcttttgctgcagagcagattcttagtgtcttcgggaaaggtcaaacctccggtatatgggcaccgagcaaatagaaatttcaccaagtttc.............................................................. HSP 2 e-value: 2.0E-6 bit: 54.0 Len: 35 Query Start:79 Query End:113 Subject Strand: NEGATIVE Subject Start: 497 Subject End: 531 ..............................................................................tttcattgaactctttttccgcagagctgattctt.................................................................................................................................. ..............................................................................tttcattgaagtcttttgccgcagagctgattctt.................................................................................................................................. HSP 3 e-value: 9.0E-6 bit: 52.0 Len: 49 Query Start:195 Query End:243 Subject Strand: NEGATIVE Subject Start: 432 Subject End: 481 ..................................................................................................................................................................................................tacttgaggtttgcagagatc-cgcatgaagcattcctttcttcgtcaaa ..................................................................................................................................................................................................tacttgaggtttgcagagagatcgcatgaagctctcctttcttcgtcaaa Subject: NC_002950_PG1684_PG1685|hypothetical protein:hypothetical protein|POSITIVE:NEGATIVE|[1771544,1772305]|762 HSP 1 e-value: 7.0E-28 bit: 125.0 Len: 183 Query Start:61 Query End:243 Subject Strand: POSITIVE Subject Start: 231 Subject End: 412 ............................................................gagactgttgcaggggattttcattgaactctttttccgcagagctgattctttgtgccttcgtgaaaggttaaacctccaggacatgagcaccgagcaaatagatatttcccccagtttctttcataggtgtatacttgaggtttgcagagatccgcatgaagcattcctttcttcgtcaaa ............................................................gagactgttgcacgggattttcattgaattcttttgctgcagggctgattccttgtgttttcaggaaaggtcaaatctcaagtatatgggcaccgagtaaacagaaatttccccaagcttccatcagaggtgtatacttgaggtttgcagata-ctgcatgaagcgctcctttcttcgtcaaa Subject: NC_002950_PG1312_PG1313|capA protein, putative:dipeptidase-related protein|POSITIVE:POSITIVE|[1391614,1392421]|808 HSP 1 e-value: 3.0E-24 bit: 113.0 Len: 121 Query Start:61 Query End:181 Subject Strand: NEGATIVE Subject Start: 406 Subject End: 526 ............................................................gagactgttgcaggggattttcattgaactctttttccgcagagctgattctttgtgccttcgtgaaaggttaaacctccaggacatgagcaccgagcaaatagatatttcccccagtttc.............................................................. ............................................................gagactgttgcaggggattttcattgagttcttttgctgcagagcagattcttagtgtcttcgggaaaggtcaaaccttcggtatatgggcaccgagcaaatagaaatttccccaagtttc.............................................................. HSP 2 e-value: 1.0E-7 bit: 58.0 Len: 52 Query Start:192 Query End:243 Subject Strand: NEGATIVE Subject Start: 125 Subject End: 177 ...............................................................................................................................................................................................gtatacttgaggtttgcagagat-ccgcatgaagcattcctttcttcgtcaaa ...............................................................................................................................................................................................gtattcttgaggtttgcagagagaccgcatgaagctctcctttcttcgtcaaa HSP 3 e-value: 2.0E-6 bit: 54.0 Len: 35 Query Start:79 Query End:113 Subject Strand: NEGATIVE Subject Start: 255 Subject End: 289 ..............................................................................tttcattgaactctttttccgcagagctgattctt.................................................................................................................................. ..............................................................................tttcattgaagtcttttgccgcagagctgattctt.................................................................................................................................. Subject: NC_002950_PG1181_PG1184|transcriptional regulator, tetR family:alginate O-acetyltransferase, putative|NEGATIVE:NEGATIVE|[1264346,1265424]|1079 HSP 1 e-value: 3.0E-24 bit: 113.0 Len: 121 Query Start:61 Query End:181 Subject Strand: NEGATIVE Subject Start: 873 Subject End: 993 ............................................................gagactgttgcaggggattttcattgaactctttttccgcagagctgattctttgtgccttcgtgaaaggttaaacctccaggacatgagcaccgagcaaatagatatttcccccagtttc.............................................................. ............................................................gagactgttgcatgggagtttgattgagctcttttgctgcagagctgattcttagtgtcttcgggaaaggtcaaacctccggtatatgggcaccgagcaaatagaaatttccccaagtttc.............................................................. HSP 2 e-value: 9.0E-6 bit: 52.0 Len: 49 Query Start:195 Query End:243 Subject Strand: NEGATIVE Subject Start: 329 Subject End: 378 ..................................................................................................................................................................................................tacttgaggtttgcagagatc-cgcatgaagcattcctttcttcgtcaaa ..................................................................................................................................................................................................tacttgaggtttgcagagagatcgcatgaagctctcctttcttcgtcaaa Subject: NC_002950_PG1156_PG1159|S4 domain protein:cobalamin biosynthesis protein CbiB|POSITIVE:NEGATIVE|[1237328,1238046]|719 HSP 1 e-value: 1.0E-23 bit: 111.0 Len: 120 Query Start:62 Query End:181 Subject Strand: POSITIVE Subject Start: 107 Subject End: 226 .............................................................agactgttgcaggggattttcattgaactctttttccgcagagctgattctttgtgccttcgtgaaaggttaaacctccaggacatgagcaccgagcaaatagatatttcccccagtttc.............................................................. .............................................................agactgttgcatgggagtttcattgagctcttttgctgcagagctgattcttagtgtcttcgggaaaggtcaaacctccggtatatgggtaccgagcaaatagaaatttccccaagtttc.............................................................. HSP 2 e-value: 2.0E-6 bit: 54.0 Len: 35 Query Start:79 Query End:113 Subject Strand: POSITIVE Subject Start: 671 Subject End: 705 ..............................................................................tttcattgaactctttttccgcagagctgattctt.................................................................................................................................. ..............................................................................tttcattgaagtcttttgccgcagagctgattctt.................................................................................................................................. Subject: NC_002950_PG1697_PG1701|type II restriction endonuclease, putative:glutamine amidotransferase, class II/dipeptidase|POSITIVE:NEGATIVE|[1785135,1786234]|1100 HSP 1 e-value: 2.0E-19 bit: 97.6 Len: 121 Query Start:61 Query End:181 Subject Strand: NEGATIVE Subject Start: 710 Subject End: 830 ............................................................gagactgttgcaggggattttcattgaactctttttccgcagagctgattctttgtgccttcgtgaaaggttaaacctccaggacatgagcaccgagcaaatagatatttcccccagtttc.............................................................. ............................................................gagactgttgcaggggattttcattgagctcttttgctgcagagctgattcttagtgcctttgggaaagatcaaacctccggtatatggacatcgagcaaacagaaattttcccaagtttc.............................................................. HSP 2 e-value: 2.0E-6 bit: 54.0 Len: 35 Query Start:79 Query End:113 Subject Strand: NEGATIVE Subject Start: 230 Subject End: 264 ..............................................................................tttcattgaactctttttccgcagagctgattctt.................................................................................................................................. ..............................................................................tttcattgaagtcttttgccgcagagctgattctt.................................................................................................................................. HSP 3 e-value: 9.0E-6 bit: 52.0 Len: 49 Query Start:195 Query End:243 Subject Strand: NEGATIVE Subject Start: 165 Subject End: 214 ..................................................................................................................................................................................................tacttgaggtttgcagagatc-cgcatgaagcattcctttcttcgtcaaa ..................................................................................................................................................................................................tacttgaggtttgcagagagatcgcatgaagctctcctttcttcgtcaaa Subject: NC_002950_PG1626_PG1630|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1710547,1711911]|1365 HSP 1 e-value: 2.0E-19 bit: 97.6 Len: 121 Query Start:61 Query End:181 Subject Strand: NEGATIVE Subject Start: 1132 Subject End: 1252 ............................................................gagactgttgcaggggattttcattgaactctttttccgcagagctgattctttgtgccttcgtgaaaggttaaacctccaggacatgagcaccgagcaaatagatatttcccccagtttc.............................................................. ............................................................gagactgttgcgggggagtttcattgagctcttttgctgcagagctgattcttagtgtcttcgggaaaggtcaaacctccggtatatggacatcgagcaaacagaaatttccccaagtttc.............................................................. HSP 2 e-value: 2.0E-6 bit: 54.0 Len: 35 Query Start:79 Query End:113 Subject Strand: NEGATIVE Subject Start: 571 Subject End: 605 ..............................................................................tttcattgaactctttttccgcagagctgattctt.................................................................................................................................. ..............................................................................tttcattgaagtcttttgccgcagagctgattctt.................................................................................................................................. Subject: NC_002950_PG1338_PG1340|umuC protein:L-lactate permease|POSITIVE:NEGATIVE|[1419685,1420387]|703 HSP 1 e-value: 7.0E-19 bit: 95.6 Len: 120 Query Start:62 Query End:181 Subject Strand: POSITIVE Subject Start: 1 Subject End: 120 .............................................................agactgttgcaggggattttcattgaactctttttccgcagagctgattctttgtgccttcgtgaaaggttaaacctccaggacatgagcaccgagcaaatagatatttcccccagtttc.............................................................. .............................................................agactgttgcatgggagtttcattgaactcttttgctgcagagctgattcttagtgcctttgggaaagatcaaacctccggtatatggacatcgagcaaacagaaatttccccaagtttc.............................................................. HSP 2 e-value: 2.0E-6 bit: 54.0 Len: 35 Query Start:79 Query End:113 Subject Strand: POSITIVE Subject Start: 401 Subject End: 435 ..............................................................................tttcattgaactctttttccgcagagctgattctt.................................................................................................................................. ..............................................................................tttcattgaagtcttttgccgcagagctgattctt.................................................................................................................................. Subject: NC_002950_PG0973_PG0975|alpha-1,2-mannosidase family protein:PhoH family protein|POSITIVE:POSITIVE|[1036623,1037423]|801 HSP 1 e-value: 6.0E-13 bit: 75.8 Len: 78 Query Start:61 Query End:138 Subject Strand: POSITIVE Subject Start: 69 Subject End: 146 ............................................................gagactgttgcaggggattttcattgaactctttttccgcagagctgattctttgtgccttcgtgaaaggttaaacct......................................................................................................... ............................................................gagactgttgcatgggagtttcatcgagctcttttgctgcagagctgattcttagtgtcttcgggaaaggtcaaacct......................................................................................................... HSP 2 e-value: 2.0E-6 bit: 54.0 Len: 35 Query Start:79 Query End:113 Subject Strand: POSITIVE Subject Start: 570 Subject End: 604 ..............................................................................tttcattgaactctttttccgcagagctgattctt.................................................................................................................................. ..............................................................................tttcattgaagtcttttgccgcagagctgattctt.................................................................................................................................. HSP 3 e-value: 9.0E-6 bit: 52.0 Len: 49 Query Start:195 Query End:243 Subject Strand: POSITIVE Subject Start: 620 Subject End: 669 ..................................................................................................................................................................................................tacttgaggtttgcagagatc-cgcatgaagcattcctttcttcgtcaaa ..................................................................................................................................................................................................tacttgaggtttgcagagagatcgcatgaagctctcctttcttcgtcaaa Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UGCACGGUAAAAGUACAAAUUGGCGUUGAAGCACGGUCUUUUCUGUCGAAUGUCUCAAUCGAGACUGUUGCAGGGGAUUUUCAUUGAACUCUUUUUCCGCAGAGCUGAUUCUUUGUGCCUUCGUGAAAGGUUAAACCUCCAGGACAUGAGCACCGAGCAAAUAGAUAUUUCCCCCAGUUUCUUUCAUAGGUGUAUACUUGAGGUUUGCAGAGAUCCGCAUGAAGCAUUCCUUUCUUCGUCAAA ...................((((((..(((((((((((..((((((.(((.(((((....)))))......(((((.(((.....)))))))).))).))))))..)))....)))).))))..((((((.((((((((.((.......(((((........(((.(((......))).)))......)))))...)).)))))))).........((.....))...))))))..)))))). (-57.44) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UUUGACGAAGAAAGGAAUGCUUCAUGCGGAUCUCUGCAAACCUCAAGUAUACACCUAUGAAAGAAACUGGGGGAAAUAUCUAUUUGCUCGGUGCUCAUGUCCUGGAGGUUUAACCUUUCACGAAGGCACAAAGAAUCAGCUCUGCGGAAAAAGAGUUCAAUGAAAAUCCCCUGCAACAGUCUCGAUUGAGACAUUCGACAGAAAAGACCGUGCUUCAACGCCAAUUUGUACUUUUACCGUGCA .(((.((..((((((.........(((((....)))))((((((..(....)...(((((.....((((((.(((.......))).))))))..))))).....))))))...))))))..((((.(((........((((((........)))))).............((((....(((((....)))))....).)))........)))))))..)).)))..(((((.......))))) (-56.20) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 960 80 31 171 122 NC_002950:PG0747|5end_sigma-54_dependent_DNA-binding_response_regulator_795294..795524_NEGATIVE 601 110 61 154 105 NC_002950:PG0602|5end_hypothetical_protein_658500..658730_POSITIVE 554 140 91 218 167 NC_002950:PG1291|5end_hypothetical_protein_1371178..1371408_NEGATIVE 494 240 199 41 1 NC_002950:PG1250|5end_hypothetical_protein_1327846..1328076_NEGATIVE 372 158 111 189 133 NC_002950:PG0181|5end_immunoreactive_32_kDa_antigen_PG49_204404..204634_POSITIVE 363 137 91 213 153 NC_002950:PG1604|5end_immunoreactive_84_kDa_antigen_PG93_1682737..1682967_POSITIVE 352 124 81 229 185 NC_002950:PG0098|5end_hypothetical_protein_115843..116073_NEGATIVE 351 158 111 71 26 NC_002950:PG0141|5end_spoOJ_protein_164747..164977_NEGATIVE 340 117 72 193 146 NC_002950:PG2096|5end_hypothetical_protein_2205415..2205645_NEGATIVE 339 87 51 231 179 NC_002950:PG1630|5end_hypothetical_protein_1711772..1712002_POSITIVE 334 219 171 205 155 NC_002950:PG1522|5end_mandelate_racemase/muconate_lactonizing_enzyme_family_protein_1600170..1600400_NEGATIVE 331 79 31 205 145 NC_002950:PG0170|5end_methionyl-tRNA_synthetase_189652..189882_POSITIVE 329 49 2 208 165 NC_002950:PG1068|5end_hypothetical_protein_1134636..1134866_POSITIVE 324 218 171 202 164 NC_002950:PG1498|5end_hypothetical_protein_1574656..1574886_POSITIVE 323 157 122 106 65 NC_002950:PG2225|5end_hypothetical_protein_2339440..2339670_POSITIVE 319 119 72 71 20 NC_002950:PG1252|5end_hypothetical_protein_1329584..1329814_NEGATIVE 318 239 195 134 97 NC_002950:PG2218|5end_potassium_uptake_protein_TrkA_2331580..2331810_POSITIVE 318 55 19 67 16 NC_002950:PG1903|5end_hypothetical_protein_2004221..2004451_NEGATIVE 317 150 101 67 8 NC_002950:PG1379|5end_ABC_transporter,_periplasmic_substrate-binding_protein,_putative_1458937..1459167_POSITIVE 316 160 111 222 164 NC_002950:PG1352|5end_hypothetical_protein_1433150..1433380_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 516 219 174 64 20 NC_002950:PG1784|3end_hypothetical_protein_1873440..1873590_POSITIVE 488 113 72 76 37 NC_002950:PG1159|3end_cobalamin_biosynthesis_protein_CbiB_1237957..1238107_NEGATIVE 381 100 51 88 42 NC_002950:PG1391|3end_hypothetical_protein_1472961..1473111_POSITIVE 381 155 114 145 104 NC_002950:PG0902|3end_alpha-1,2-mannosidase_family_protein_966746..966896_NEGATIVE 351 158 111 63 18 NC_002950:PG0142|3end_SpoOJ_regulator_protein_164755..164905_NEGATIVE 340 117 72 87 40 NC_002950:PG2097|3end_ribose-phosphate_pyrophosphokinase_2205521..2205671_NEGATIVE 337 63 21 150 110 NC_002950:PG0526|3end_putative_inner_membrane_protein_translocase_component_YidC_572709..572859_POSITIVE 327 105 64 89 47 NC_002950:PG0945|3end_ABC_transporter,_permease_protein,_putative_1005104..1005254_NEGATIVE 324 218 171 101 63 NC_002950:PG1497|3end_DNA-binding_protein,_histone-like_family_1574635..1574785_POSITIVE 323 157 122 86 45 NC_002950:PG2224|3end_hypothetical_protein_2339500..2339650_POSITIVE 323 76 33 83 40 NC_002950:PG1133|3end_hypothetical_protein_1214103..1214253_POSITIVE 321 76 35 80 40 NC_002950:PG0396|3end_transcriptional_regulator,_Crp/Fnr_family_434291..434441_POSITIVE 320 67 21 120 61 NC_002950:PG1392|3end_rod_shape-determining_protein_RodA,_putative_1472959..1473109_NEGATIVE 319 119 72 58 7 NC_002950:PG1253|3end_DNA_ligase,_NAD-dependent_1329597..1329747_NEGATIVE 318 239 195 81 44 NC_002950:PG2217|3end_1-deoxy-D-xylulose-5-phosphate_synthase_2331607..2331757_POSITIVE 314 78 34 74 25 NC_002950:PG1849|3end_DNA_repair_protein_RecN_1947379..1947529_NEGATIVE 314 109 62 143 99 NC_002950:PG0259|3end_hypothetical_protein_293701..293851_POSITIVE 313 119 73 132 101 NC_002950:PG1389|3end_DNA-binding_protein,_histone-like_family_1470870..1471020_NEGATIVE 308 80 32 106 62 NC_002950:PG1855|3end_carboxyl-terminal_protease_1953842..1953992_NEGATIVE 307 70 21 142 81 NC_002950:PG1715|3end_hypothetical_protein_1803393..1803543_NEGATIVE