Origin IGS: cgttctgtttatttaatatgtaggggaaagtattgtactatttgtatgaggatcagccgaatcggttcagatatagtcctgtcctgcagatatgcaggcgataaacgtacgccaacgctcaagcaaagtggtaagatcggcaggtatatcggagtcgaactgcatctccactcccgtgacaggatggcgaaagcctaatgtcttggcatgcagagcctgtcgtggacagatagccaaacagttctgcacgaatcggcggtaattggccgtattgtttcctctcaggatttgatcgccgccataacgctcgtcagcaaacaacgtatggcctatgtgcttcatgtgtgccctgatctgatgggtacgccctgtctccagacggcattctatccagctgacgtatgccagttcttccaagacctgataatgcgttacggccggtttgccaatatctccatcgggagggaataccgccatttgcaggcggtctttcaggtcgcgtcctatattgccggtaatggttccgatcgggtagtcgaaacgtccccataccagtgcacgataggaacgatgcgtcgtcttataatagaattgcttgcacaagtccgatttggcttcggccctcttggcaacaaccagaaggccgctcgtgtccttgtctatacggtgtacgagtcccagactcggatccatggggtcgtattcaggatcctctcggaggtagtaggccagtgcattgaccagtgtacccgtgtaattgccatggccggggtgtaccactaatccggcaggcttattgatcacgagcagtacatcgtcttcatacactatatcgagtggaatatcttcgggaatgatctccaattcccgtcgtggccggaggagttccaacgtgaccacatcgcccggtttgatccggtagttgctctttaccggtcggccattgacgaatatggcaccggcttcagccgcttgttggatacggctgcgtgtggcgttgttcatcctgtcgacaaggaatttgtcgatacgaataagtgtctgtcccggatctgctacagtgcggaaatgttcgtatctgtcctcttcctccgggtcgagtccgccgtccgagatgtcctctgcatcgtcttcgtcgaatagctccgccatctcgggagtcatccggtactgaagttcttcctccataaggtatacccga .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 tcgggtataccttatggaggaagaacttcagtaccggatgactcccgagatggcggagctattcgacgaagacgatgcagaggacatctcggacggcggactcgacccggaggaagaggacagatacgaacatttccgcactgtagcagatccgggacagacacttattcgtatcgacaaattccttgtcgacaggatgaacaacgccacacgcagccgtatccaacaagcggctgaagccggtgccatattcgtcaatggccgaccggtaaagagcaactaccggatcaaaccgggcgatgtggtcacgttggaactcctccggccacgacgggaattggagatcattcccgaagatattccactcgatatagtgtatgaagacgatgtactgctcgtgatcaataagcctgccggattagtggtacaccccggccatggcaattacacgggtacactggtcaatgcactggcctactacctccgagaggatcctgaatacgaccccatggatccgagtctgggactcgtacaccgtatagacaaggacacgagcggccttctggttgttgccaagagggccgaagccaaatcggacttgtgcaagcaattctattataagacgacgcatcgttcctatcgtgcactggtatggggacgtttcgactacccgatcggaaccattaccggcaatataggacgcgacctgaaagaccgcctgcaaatggcggtattccctcccgatggagatattggcaaaccggccgtaacgcattatcaggtcttggaagaactggcatacgtcagctggatagaatgccgtctggagacagggcgtacccatcagatcagggcacacatgaagcacataggccatacgttgtttgctgacgagcgttatggcggcgatcaaatcctgagaggaaacaatacggccaattaccgccgattcgtgcagaactgtttggctatctgtccacgacaggctctgcatgccaagacattaggctttcgccatcctgtcacgggagtggagatgcagttcgactccgatatacctgccgatcttaccactttgcttgagcgttggcgtacgtttatcgcctgcatatctgcaggacaggactatatctgaaccgattcggctgatcctcatacaaatagtacaatactttcccctacatattaaataaacagaacg Mask Tandem Repeat Region ================================================ cgttctgtttatttaatatgtaggggaaagtattgtactatttgtatgaggatcagccgaatcggttcagatatagtcctgtcctgcagatatgcaggcgataaacgtacgccaacgctcaagcaaagtggtaagatcggcaggtatatcggagtcgaactgcatctccactcccgtgacaggatggcgaaagcctaatgtcttggcatgcagagcctgtcgtggacagatagccaaacagttctgcacgaatcggcggtaattggccgtattgtttcctctcaggatttgatcgccgccataacgctcgtcagcaaacaacgtatggcctatgtgcttcatgtgtgccctgatctgatgggtacgccctgtctccagacggcattctatccagctgacgtatgccagttcttccaagacctgataatgcgttacggccggtttgccaatatctccatcgggagggaataccgccatttgcaggcggtctttcaggtcgcgtcctatattgccggtaatggttccgatcgggtagtcgaaacgtccccataccagtgcacgataggaacgatgcgtcgtcttataatagaattgcttgcacaagtccgatttggcttcggccctcttggcaacaaccagaaggccgctcgtgtccttgtctatacggtgtacgagtcccagactcggatccatggggtcgtattcaggatcctctcggaggtagtaggccagtgcattgaccagtgtacccgtgtaattgccatggccggggtgtaccactaatccggcaggcttattgatcacgagcagtacatcgtcttcatacactatatcgagtggaatatcttcgggaatgatctccaattcccgtcgtggccggaggagttccaacgtgaccacatcgcccggtttgatccggtagttgctctttaccggtcggccattgacgaatatggcaccggcttcagccgcttgttggatacggctgcgtgtggcgttgttcatcctgtcgacaaggaatttgtcgatacgaataagtgtctgtcccggatctgctacagtgcggaaatgttcgtatctgtcctcttcctccgggtcgagtccgccgtccgagatgtcctctgcatcgtcttcgtcgaatagctccgccatctcgggagtcatccggtactgaagttcttcctccataaggtatacccga Find is-nt database================================================ Query_seq: PG0729:PG0731|PG0729:PG0731:D-alanylalanine synthetase:hypothetical protein:<-<-:780909..782109 1201 cgttctgtttatttaatatgtaggggaaagtattgtactatttgtatgaggatcagccgaatcggttcagatatagtcctgtcctgcagatatgcaggcgataaacgtacgccaacgctcaagcaaagtggtaagatcggcaggtatatcggagtcgaactgcatctccactcccgtgacaggatggcgaaagcctaatgtcttggcatgcagagcctgtcgtggacagatagccaaacagttctgcacgaatcggcggtaattggccgtattgtttcctctcaggatttgatcgccgccataacgctcgtcagcaaacaacgtatggcctatgtgcttcatgtgtgccctgatctgatgggtacgccctgtctccagacggcattctatccagctgacgtatgccagttcttccaagacctgataatgcgttacggccggtttgccaatatctccatcgggagggaataccgccatttgcaggcggtctttcaggtcgcgtcctatattgccggtaatggttccgatcgggtagtcgaaacgtccccataccagtgcacgataggaacgatgcgtcgtcttataatagaattgcttgcacaagtccgatttggcttcggccctcttggcaacaaccagaaggccgctcgtgtccttgtctatacggtgtacgagtcccagactcggatccatggggtcgtattcaggatcctctcggaggtagtaggccagtgcattgaccagtgtacccgtgtaattgccatggccggggtgtaccactaatccggcaggcttattgatcacgagcagtacatcgtcttcatacactatatcgagtggaatatcttcgggaatgatctccaattcccgtcgtggccggaggagttccaacgtgaccacatcgcccggtttgatccggtagttgctctttaccggtcggccattgacgaatatggcaccggcttcagccgcttgttggatacggctgcgtgtggcgttgttcatcctgtcgacaaggaatttgtcgatacgaataagtgtctgtcccggatctgctacagtgcggaaatgttcgtatctgtcctcttcctccgggtcgagtccgccgtccgagatgtcctctgcatcgtcttcgtcgaatagctccgccatctcgggagtcatccggtactgaagttcttcctccataaggtatacccga Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PG0729:PG0731|PG0729:PG0731:D-alanylalanine synthetase:hypothetical protein:<-<-:780909..782109 1201 cgttctgtttatttaatatgtaggggaaagtattgtactatttgtatgaggatcagccgaatcggttcagatatagtcctgtcctgcagatatgcaggcgataaacgtacgccaacgctcaagcaaagtggtaagatcggcaggtatatcggagtcgaactgcatctccactcccgtgacaggatggcgaaagcctaatgtcttggcatgcagagcctgtcgtggacagatagccaaacagttctgcacgaatcggcggtaattggccgtattgtttcctctcaggatttgatcgccgccataacgctcgtcagcaaacaacgtatggcctatgtgcttcatgtgtgccctgatctgatgggtacgccctgtctccagacggcattctatccagctgacgtatgccagttcttccaagacctgataatgcgttacggccggtttgccaatatctccatcgggagggaataccgccatttgcaggcggtctttcaggtcgcgtcctatattgccggtaatggttccgatcgggtagtcgaaacgtccccataccagtgcacgataggaacgatgcgtcgtcttataatagaattgcttgcacaagtccgatttggcttcggccctcttggcaacaaccagaaggccgctcgtgtccttgtctatacggtgtacgagtcccagactcggatccatggggtcgtattcaggatcctctcggaggtagtaggccagtgcattgaccagtgtacccgtgtaattgccatggccggggtgtaccactaatccggcaggcttattgatcacgagcagtacatcgtcttcatacactatatcgagtggaatatcttcgggaatgatctccaattcccgtcgtggccggaggagttccaacgtgaccacatcgcccggtttgatccggtagttgctctttaccggtcggccattgacgaatatggcaccggcttcagccgcttgttggatacggctgcgtgtggcgttgttcatcctgtcgacaaggaatttgtcgatacgaataagtgtctgtcccggatctgctacagtgcggaaatgttcgtatctgtcctcttcctccgggtcgagtccgccgtccgagatgtcctctgcatcgtcttcgtcgaatagctccgccatctcgggagtcatccggtactgaagttcttcctccataaggtatacccga Intra-Species Hit: Count: 0 Inter-species Hit: Count: 4 Min: 109 Max: 1062 Len: 954 Subject: gi|89109396|ref|AP_003176.1| 23S rRNA pseudouridine synthase [Escherichia coli W3110] HSP 1 e-value: 3.0E-45 bit: 179.0 Len: 924 Query Start:109 Query End:1032 Subject Strand: null Subject Start: 19 Subject End: 313 ............................................................................................................ R I D K F L V D R M N N A T R S R I Q Q A A E A G A I F V N G R P V - K S N Y R I K P G D V V T X X X X X X X X X X X X X X X X X X X X I V Y E D D V L L V I N K P A G L V V H P G H G N Y T G T L V N A L A Y Y L R E D P E Y D P M D - - P S L G L V H R I D K D T S G L L V V A K R A E A K S D L C K Q F Y Y K T T H R S Y R A L V W G R F D Y P I G T I T G N I G R D L K D R L Q M A V F P P D G D I G K P A V T H Y Q V L E E L A Y V S W I E C R L E T G R T H Q I R A H M K H I G H T L F A D E R Y G G D Q I L R G N N T A N Y R R F V Q N C L A I C P R Q A L H A K T L G F R H P V T G V E M Q F D S D I P A D L T T L L E R W R ......................................................................................................................................................................... ............................................................................................................ R L D Q A L A E M F P D Y S R S R I K E W I L D Q R V L V N G K V C D K P K E K V L G G E Q V A I N A E I E E E A R F E P Q D I P L D I - V Y E D E D I I I I N K P R D L V V H P G A G N P D G T V L N A L L H Y - - - - - - Y P P I A D V P R A G I V H R L D K D T T G L M V V A K T V P A Q T R L V E S L Q R R E I T R E Y E A V A I G H M T A G - G T V D E P I S R H P T K R T H M A V H P - - - - M G K P A V T H Y R I M E H F R V H T R L R L R L E T G R T H Q I R V H M A H I T H P L V G D P V Y G G - - - - R P R P P K G A S E A F I S T L R K F D R Q A L H A T M L R L Y H P I S G I E M E W H A P I P Q D M V E L I E V M R ......................................................................................................................................................................... Subject: gi|89107932|ref|AP_001712.1| 23S rRNA pseudouridylate synthase [Escherichia coli W3110] HSP 1 e-value: 2.0E-32 bit: 136.0 Len: 954 Query Start:109 Query End:1062 Subject Strand: null Subject Start: 14 Subject End: 316 ............................................................................................................ T V A D P G Q T L I R I D K F L V D R M N N A T R S R I Q Q A A E A G A I F V N G R P V K S N Y R I K P G D V V - - - - - - - T X X X X X X X X X X X X X X X X X X X X I V Y E D D V L L V I N K P A G L V V H P G H G N Y T G T L V N A L A Y Y L R E D P E Y D P M D P S L G L V H R I D K D T S G L L V V A K R A E A K S D L C K Q F Y Y K T T H R S Y R A L V W G R F D Y P I G T I T G N I G R D L K D R L Q M A V F P P D G D I G K P A V T H Y Q V L E E L A Y V S W I E C R L E T G R T H Q I R A H M K H I G H T L F A D E R Y G G - - - D Q I L R G N N T A N Y R R F V Q N C L A I C P R Q A L H A K T L G F R H P V T G V E M Q F D S D I P A D L T T L L E R W R ........................................................................................................................................... ............................................................................................................ T A D E A G Q - - - R I D N F L R T Q L K G V P K S M I Y R I L R K G E V R V N K K R I K P E Y K L E A G D E V R I P P V R V A E R E E E A V S P H L Q K V A A L A D V I L Y E D D H I L V L N K P S G T A V H G G S G L S F G V I E G L R A - - L R P E A R F - - - - - - L E L V H R L D R D T S G V L L V A K K R S A L R S L H E Q L R E K G M Q K D Y L A L V R G Q W Q S H V K S V Q A P L L K N I L Q S G E R I V R V S Q E - - G K P S E T R F K V E E R Y A F A T L V R C S P V T G R T H Q I R V H T Q Y A G H P I A F D D R Y G D R E F D R Q L T E A G T G L N R L F - - - - - - - - - - - - L H A A A L K F T H P G T G E V M R I E A P M D E G L K R C L Q K L R ........................................................................................................................................... Subject: gi|89106942|ref|AP_000722.1| pseudouridine synthase for 23S rRNA (position 746) and tRNAphe(position 32) [Escherichia coli W3110] HSP 1 e-value: 4.0E-20 bit: 95.9 Len: 693 Query Start:136 Query End:828 Subject Strand: null Subject Start: 17 Subject End: 218 ....................................................................................................................................... V Y E D D V L L V I N K P A G L V V H P G - - - - H G N Y T G T L V N A L A Y Y L R E D P E Y D P M D P S L G L V H R I D K D T S G L L V V A K R A E A K S D L C K Q F Y Y K T T H R S Y R A L V W G R F D Y P I G T I T G N I G R D L K D R L Q M A V F P P D G D I G K P A V T H Y Q V L E E L A - Y V S W I E C R L E T G R T H Q I R A H M K H I G H T L F A D E R Y G G D Q I L R G N N T A N Y R R F V Q N C L A I C P R Q A L H A K T L G F R H P V T G V E M Q F D S D I P A D ..................................................................................................................................................................................................................................................................................................................................................................................... ....................................................................................................................................... L Y Q D D H I M V V N K P S G L L S V P G R L E E H K D S V M T R I Q - - - - - - R D Y P Q A E S - - - - - - - V H R L D M A T S G V I V V A L T K A A E R E L K R Q F R E R E P K K Q Y V A R V W G H P S P A E G L V D L P L I C D W P N R P K Q K V C - - - Y E T G K P A Q T E Y E V V E Y A A D N T A R V V L K P I T G R S H Q L R V H M L A L G H P I L G D R F Y A S P E - - - - - - - - - - - - - - - - A R A M A P R L L L H A E M L T I T H P A Y G N S M T F K A - - P A D ..................................................................................................................................................................................................................................................................................................................................................................................... Subject: gi|89109577|ref|AP_003357.1| tRNA pseudouridine synthase [Escherichia coli W3110] HSP 1 e-value: 6.0E-14 bit: 75.5 Len: 657 Query Start:172 Query End:828 Subject Strand: null Subject Start: 5 Subject End: 214 ........................................................................................................................................................................... V Y E D D V L L V I N K P A G L V V H P G H G N Y T G T L V N A L A Y Y L R E D P E Y D P M D P S L G L V H R I D K D T S G L L V V A K R A E A K S D L C K Q F Y Y K T T H R S Y R A L V W G R F - - - - - - D Y P I G T I T G N I G R D L K D R L Q M A V F P P D G D I G K P A V T H Y Q V L E E L A Y - - - - - - - - - - - V S W I E C R L E T G R T H Q I R A H M K H I G H T L F A D E R Y G G D Q I L R G N N T A N Y R R F V Q N C L A I C P R Q A L H A K T L G F R H P V T G ..................................................................................................................................................................................................................................................................................................................................................................................... ........................................................................................................................................................................... L Y Q D E W L V A V N K P S G W L V H R S W L D R D E K V V - - V M Q T V R - - - - - D Q I G Q H V F T A H R L D R P T S G V L L M G L S S E A G R L L A Q Q F E Q H Q I Q K R Y H A I V R G W L M E E A V L D Y P L V E E L D K I A D K - - - - - - - - - F A R E D K G P Q P A V T H Y R G L A T V E M P V A T G R Y P T T R Y G L V E L E P K T G R K H Q L R R H L A H L R H P I I G D S K H G D - - - L R Q N R S G A E H F G L Q - - - - - - - R L M L H A S Q L S L T H P F T G ..................................................................................................................................................................................................................................................................................................................................................................................... Find nr database================================================ Query_seq: PG0729:PG0731|PG0729:PG0731:D-alanylalanine synthetase:hypothetical protein:<-<-:780909..782109 1201 cgttctgtttatttaatatgtaggggaaagtattgtactatttgtatgaggatcagccgaatcggttcagatatagtcctgtcctgcagatatgcaggcgataaacgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcggaaatgttcgtatctgtcctcttcctccgggtcgagtccgccgtccgagatgtcctctgcatcgtcttcgtcgaatagctccgccatctcgggagtcatccggtactgaagttcttcctccataaggtatacccga Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 cgttctgtttatttaatatgtaggggaaagtattgtactatttgtatgaggatcagccgaatcggttcagatatagtcctgtcctgcagatatgcaggcgataaacgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcggaaatgttcgtatctgtcctcttcctccgggtcgagtccgccgtccgagatgtcctctgcatcgtcttcgtcgaatagctccgccatctcgggagtcatccggtactgaagttcttcctccataaggtatacccga Predict ORF larger than 30AA ================================================ Protein_Len: 60 Strand: + Start: 16 End: 195 ............... M C R G K Y C T I C M R I S R I G S D I V L S C R Y A G D K R T P T L K Q S G K I G R Y I G V E L H L H S R D R M A K A .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 56 Strand: + Start: 92 End: 259 ........................................................................................... M Q A I N V R Q R S S K V V R S A G I S E S N C I S T P V T G W R K P N V L A C R A C R G Q I A K Q F C T N R R .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 33 Strand: + Start: 252 End: 350 ........................................................................................................................................................................................................................................................... M G G N W P Y C F L S G F D R R H N A R Q Q T T Y G L C A S C V P ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 38 Strand: + Start: 402 End: 515 ................................................................................................................................................................................................................................................................................................................................................................................................................. M P V L P R P D N A L R P V C Q Y L H R E G I P P F A G G L S G R V L Y C R .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 30 Strand: + Start: 443 End: 532 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................... M P I S P S G G N T A I C R R S F R S R P I L P V M V P I G ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 42 Strand: + Start: 596 End: 721 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M H K S D L A S A L L A T T R R P L V S L S I R C T S P R L G S M G S Y S G S S R R ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 60 Strand: + Start: 549 End: 737 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M P V H D R N D A S S Y N R I A C T S P I W L R P S W Q Q P E G R S C P C L Y G V R V P D S D P W G R I Q D P L G G S R ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 60 Strand: + Start: 208 End: 780 ............................................................................................................................................................................................................... M Q S L S W T D S Q T V L H E S A V I G R I V S S Q D L I A A I T L V S K Q R M A Y V L H V C P D L M G T P C L Q T A F ..................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 54 Strand: + Start: 758 End: 919 ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M P W P G C T T N P A G L L I T S S T S S S Y T I S S G I S S G M I S N S R R G R R S S N V T T S P G L I R .......................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 796 End: 1140 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M D H E Q Y I V F I H Y I E W N I F G N D L Q F P S W P E E F Q R D H I A R F D P V V A L Y R S A I D E Y G T G F S R L ............................................................. Protein_Len: 60 Strand: + Start: 923 End: 1171 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M L F T G R P L T N M A P A S A A C W I R L R V A L F I L S T R N L S I R I S V C P G S A T V R K C S Y L S S S S G S S .............................. Protein_Len: 50 Strand: + Start: 1038 End: 1187 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M S V P D L L Q C G N V R I C P L P P G R V R R P R C P L H R L R R I A P P S R E S S G T E V L P P .............. Protein_Len: 60 Strand: - Start: 968 End: 1195 ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... P I Q R Y S Y T D T G S R S C H P F T R I Q G R G G P R T R R G L H G R C R R R R I A G G D R S D D P V S T R G G Y P M ...... Protein_Len: 43 Strand: - Start: 824 End: 952 ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... V S Y R T S Y R R S H D G I G T T A P P T G V H G C R G T Q D P L Q E K G T P W Q R M ......................................................................................................................................................................................................................................................... Protein_Len: 34 Strand: - Start: 663 End: 764 ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... V T Y S D W V R I W P T T N L I R E S T T P W H M S W H V R T I A M ..................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 40 Strand: - Start: 584 End: 703 ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... L L I A Q V L G I Q S R G E Q C C G S P R E H G Q R Y P T R T G S E S G H P R M .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 43 Strand: - Start: 507 End: 635 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... I A P L P E S R T T S V D G Y W H V I P V I R R R I I S N S A C T R N P K P G R P L M ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 314 End: 550 ......................................................................................................................................................................................................................................................................................................................... D G S P M R D L Q R I G T R G L G S L A N R G T Q W Y R W R S P I G G N A P P R E P R T R Y Q R Y H N R D P L R F T G M ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 44 Strand: - Start: 122 End: 253 ......................................................................................................................... A F H Y S R C T Y R L R V A D G S G H C S P S L R I D Q C A S G T T S L Y G F L E A R M .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 70 End: 1188 ..................................................................... D V L F K D I R I L T Q G P D A V T R F H E Y R D E E E P D L G G D S I D E A D D E D F L E A M E P T M R Y Q L E E E M ............. Protein_Len: 58 Strand: - Start: 12 End: 185 ........... K I H L P F Y Q V I Q I L I L R I P E S I T R D Q L Y A P S L R V G V S L C L P L I P L Y I P T S S C R W E R S L M ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ cgttctgtttatttaatatgtaggggaaagtattgtactatttgtatgaggatcagccgaatcggttcagatatagtcctgtcctgcagatatgcaggcgataaacgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcggaaatgttcgtatctgtcctcttcctccgggtcgagtccgccgtccgagatgtcctctgcatcgtcttcgtcgaatagctccgccatctcgggagtcatccggtactgaagttcttcctccataaggtatacccga Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ cgttctgtttatttaatatgtaggggaaagtattgtactatttgtatgaggatcagccgaatcggttcagatatagtcctgtcctgcagatatgcaggcgataaacgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcggaaatgttcgtatctgtcctcttcctccgggtcgagtccgccgtccgagatgtcctctgcatcgtcttcgtcgaatagctccgccatctcgggagtcatccggtactgaagttcttcctccataaggtatacccga Predict TransTerm conf > 70================================================ Find igs database================================================ Query_seq: PG0729:PG0731|PG0729:PG0731:D-alanylalanine synthetase:hypothetical protein:<-<-:780909..782109 1201 cgttctgtttatttaatatgtaggggaaagtattgtactatttgtatgaggatcagccgaatcggttcagatatagtcctgtcctgcagatatgcaggcgataaacgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcggaaatgttcgtatctgtcctcttcctccgggtcgagtccgccgtccgagatgtcctctgcatcgtcttcgtcgaatagctccgccatctcgggagtcatccggtactgaagttcttcctccataaggtatacccga Intra-Species Hit: Count: 1 Min: 1 Max: 1201 Len: 1201 Subject: NC_002950_PG0729_PG0731|D-alanylalanine synthetase:hypothetical protein|NEGATIVE:NEGATIVE|[780909,782109]|1201 HSP 1 e-value: 7.0E-72 bit: 274.0 Len: 138 Query Start:1064 Query End:1201 Subject Strand: POSITIVE Subject Start: 1064 Subject End: 1201 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cggaaatgttcgtatctgtcctcttcctccgggtcgagtccgccgtccgagatgtcctctgcatcgtcttcgtcgaatagctccgccatctcgggagtcatccggtactgaagttcttcctccataaggtatacccga .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cggaaatgttcgtatctgtcctcttcctccgggtcgagtccgccgtccgagatgtcctctgcatcgtcttcgtcgaatagctccgccatctcgggagtcatccggtactgaagttcttcctccataaggtatacccga HSP 2 e-value: 5.0E-54 bit: 214.0 Len: 108 Query Start:1 Query End:108 Subject Strand: POSITIVE Subject Start: 1 Subject End: 108 cgttctgtttatttaatatgtaggggaaagtattgtactatttgtatgaggatcagccgaatcggttcagatatagtcctgtcctgcagatatgcaggcgataaacgt..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... cgttctgtttatttaatatgtaggggaaagtattgtactatttgtatgaggatcagccgaatcggttcagatatagtcctgtcctgcagatatgcaggcgataaacgt..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ CGUUCUGUUUAUUUAAUAUGUAGGGGAAAGUAUUGUACUAUUUGUAUGAGGAUCAGCCGAAUCGGUUCAGAUAUAGUCCUGUCCUGCAGAUAUGCAGGCGAUAAACGUACGCCAACGCUCAAGCAAAGUGGUAAGAUCGGCAGGUAUAUCGGAGUCGAACUGCAUCUCCACUCCCGUGACAGGAUGGCGAAAGCCUAAUGUCUUGGCAUGCAGAGCCUGUCGUGGACAGAUAGCCAAACAGUUCUGCACGAAUCGGCGGUAAUUGGCCGUAUUGUUUCCUCUCAGGAUUUGAUCGCCGCCAUAACGCUCGUCAGCAAACAACGUAUGGCCUAUGUGCUUCAUGUGUGCCCUGAUCUGAUGGGUACGCCCUGUCUCCAGACGGCAUUCUAUCCAGCUGACGUAUGCCAGUUCUUCCAAGACCUGAUAAUGCGUUACGGCCGGUUUGCCAAUAUCUCCAUCGGGAGGGAAUACCGCCAUUUGCAGGCGGUCUUUCAGGUCGCGUCCUAUAUUGCCGGUAAUGGUUCCGAUCGGGUAGUCGAAACGUCCCCAUACCAGUGCACGAUAGGAACGAUGCGUCGUCUUAUAAUAGAAUUGCUUGCACAAGUCCGAUUUGGCUUCGGCCCUCUUGGCAACAACCAGAAGGCCGCUCGUGUCCUUGUCUAUACGGUGUACGAGUCCCAGACUCGGAUCCAUGGGGUCGUAUUCAGGAUCCUCUCGGAGGUAGUAGGCCAGUGCAUUGACCAGUGUACCCGUGUAAUUGCCAUGGCCGGGGUGUACCACUAAUCCGGCAGGCUUAUUGAUCACGAGCAGUACAUCGUCUUCAUACACUAUAUCGAGUGGAAUAUCUUCGGGAAUGAUCUCCAAUUCCCGUCGUGGCCGGAGGAGUUCCAACGUGACCACAUCGCCCGGUUUGAUCCGGUAGUUGCUCUUUACCGGUCGGCCAUUGACGAAUAUGGCACCGGCUUCAGCCGCUUGUUGGAUACGGCUGCGUGUGGCGUUGUUCAUCCUGUCGACAAGGAAUUUGUCGAUACGAAUAAGUGUCUGUCCCGGAUCUGCUACAGUGCGGAAAUGUUCGUAUCUGUCCUCUUCCUCCGGGUCGAGUCCGCCGUCCGAGAUGUCCUCUGCAUCGUCUUCGUCGAAUAGCUCCGCCAUCUCGGGAGUCAUCCGGUACUGAAGUUCUUCCUCCAUAAGGUAUACCCGA ......((.(((((..((((.(((((((..(...((((.........(((((.(((.((((((((..(((((((.....((.((((((....))))))))...((((.((((((((((.......(((((((......(((((...(((((((.((((((((....(((.((((((.((((....(((....)))...)))).((((.((((((((.(((..(((........))).))))))))))).((((((((.(((..((((.((((((..(((.....)))..)))).)).))))..((((.(((((((..........(((.....((((.....((((((((.........))))))))...(((....))).)))).....)))))))))).....(((.(((....))).))).....))))))).))))))))))))..........)))))))))..((((((.......))))))......((((((((..((((((.(((((.((((((((((..((((....((((((.((((((....(((((..((((((.(((....)))))))))............)))))..(((((((((((...(((((.(((.((......))))).)))))((((((..((.((....))))..))))))..))))).))))))..)))))).))).)))...))))..))))).....((.((..(((((((....)))))))..)).))...))))).)))))))))))..(((..((((((..((....(((..((((........))))..)))..((((......)))).........(((((((........)))))))..)).))))))..)))....))))))))........))))))))))))))).))))).....(((((..(((((........)))))))))).....)))))))((((....)))).)))).))))))))))..((.((((((((((...)))))))))).))....)))))))..)))..(((((......)))))...)))))...))))))))......(((((.((.(((......(((((((.(....((.(((.......)))...))...).)))))))))).)))))))))))..)..))).)))).))))))))).)).... (-425.94) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UCGGGUAUACCUUAUGGAGGAAGAACUUCAGUACCGGAUGACUCCCGAGAUGGCGGAGCUAUUCGACGAAGACGAUGCAGAGGACAUCUCGGACGGCGGACUCGACCCGGAGGAAGAGGACAGAUACGAACAUUUCCGCACUGUAGCAGAUCCGGGACAGACACUUAUUCGUAUCGACAAAUUCCUUGUCGACAGGAUGAACAACGCCACACGCAGCCGUAUCCAACAAGCGGCUGAAGCCGGUGCCAUAUUCGUCAAUGGCCGACCGGUAAAGAGCAACUACCGGAUCAAACCGGGCGAUGUGGUCACGUUGGAACUCCUCCGGCCACGACGGGAAUUGGAGAUCAUUCCCGAAGAUAUUCCACUCGAUAUAGUGUAUGAAGACGAUGUACUGCUCGUGAUCAAUAAGCCUGCCGGAUUAGUGGUACACCCCGGCCAUGGCAAUUACACGGGUACACUGGUCAAUGCACUGGCCUACUACCUCCGAGAGGAUCCUGAAUACGACCCCAUGGAUCCGAGUCUGGGACUCGUACACCGUAUAGACAAGGACACGAGCGGCCUUCUGGUUGUUGCCAAGAGGGCCGAAGCCAAAUCGGACUUGUGCAAGCAAUUCUAUUAUAAGACGACGCAUCGUUCCUAUCGUGCACUGGUAUGGGGACGUUUCGACUACCCGAUCGGAACCAUUACCGGCAAUAUAGGACGCGACCUGAAAGACCGCCUGCAAAUGGCGGUAUUCCCUCCCGAUGGAGAUAUUGGCAAACCGGCCGUAACGCAUUAUCAGGUCUUGGAAGAACUGGCAUACGUCAGCUGGAUAGAAUGCCGUCUGGAGACAGGGCGUACCCAUCAGAUCAGGGCACACAUGAAGCACAUAGGCCAUACGUUGUUUGCUGACGAGCGUUAUGGCGGCGAUCAAAUCCUGAGAGGAAACAAUACGGCCAAUUACCGCCGAUUCGUGCAGAACUGUUUGGCUAUCUGUCCACGACAGGCUCUGCAUGCCAAGACAUUAGGCUUUCGCCAUCCUGUCACGGGAGUGGAGAUGCAGUUCGACUCCGAUAUACCUGCCGAUCUUACCACUUUGCUUGAGCGUUGGCGUACGUUUAUCGCCUGCAUAUCUGCAGGACAGGACUAUAUCUGAACCGAUUCGGCUGAUCCUCAUACAAAUAGUACAAUACUUUCCCCUACAUAUUAAAUAAACAGAACG ((((((...((...(((((......)))))...(((((((.((((((......))).((...(((.......))).)).)))..)))).)))..))...))))))...((.((((((((((((...((((....((.((......)).))..(((..((((............(((((((.....)))))))...(((((((.((((((.((((.(((((.........)))))....(((((((((((........)))))..))))))...((((((...((((......)))).....(((((...(((((((((((((..(((....(((((((........)))))))...................(((((((((.((((((((...(((((((.((.....(((.(((((....(((...))).)))))...)))..(((.((((((((...(((((......))))).......(((.(((((((((((..........)).))))))...))).)))...)))).)))).))).....)))))))))(((((((((((....))).)))))))).........(((..((((((..((.....))..)))))).))).))))))))....))))))))))))..))))).)))))))).....((((((..((......))..((((.(((..(((.(((....((((((.......)))))).((((((((((..(((....((((....(((.(((((((((....((((.(((....))).))))....(((((((.((((((.(((((..(((....))))))))..............(((....(((.....)))..))).....))))))))))))).))))))))))))...)))).))).((.((((.......((((........))))...((((((((.(((((((((.....).))).)))))..))))))))...........(((....))).)))).)).)))))).))))...))).)))..))).)))).....))))))..))))).))))))..))))))))))..))))))).((((((....))))))...........))))..))).)))).))).))))).(((.....))).......))))))...................... (-418.90) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 1024 100 51 191 142 NC_002950:PG0729|5end_D-alanylalanine_synthetase_780818..781048_NEGATIVE 493 919 871 115 41 NC_002950:PG0212|5end_precorrin-6Y_C5,15-methyltransferase,_decarboxylating_249065..249295_NEGATIVE 492 1170 1121 230 169 NC_002950:PG2032|5end_primosomal_protein_N'_2133381..2133611_NEGATIVE 487 1132 1092 106 67 NC_002950:PG0326|5end_hypothetical_protein_360974..361204_NEGATIVE 466 548 504 223 175 NC_002950:PG0549|5end_ISPg1,_transposase_607072..607302_NEGATIVE 464 949 905 61 9 NC_002950:PG1103|5end_ATPase,_AAA_family_1173605..1173835_POSITIVE 456 1140 1093 54 5 NC_002950:PG0230|5end_transaldolase_265372..265602_POSITIVE 451 1125 1084 79 21 NC_002950:PG1091|5end_DHH_subfamily_1_protein_1157017..1157247_POSITIVE 445 1009 962 211 146 NC_002950:PG0164|5end_hypothetical_protein_187395..187625_NEGATIVE 443 1148 1103 212 163 NC_002950:PG1524|5end_2-succinyl-6-hydroxy-2,_4-cyclohexadiene-1-carboxylic_acid_synthase/2-oxoglutarate_decarboxylase_1602746..1602976_NEGATIVE 442 480 435 60 11 NC_002950:PG1675|5end_hypothetical_protein_1760182..1760412_POSITIVE 441 970 933 54 14 NC_002950:PG0401|5end_hypothetical_protein_439306..439536_NEGATIVE 439 910 861 217 173 NC_002950:PG1247|5end_3-dehydroquinate_synthase_1324444..1324674_POSITIVE 437 1125 1088 194 152 NC_002950:PG1760|5end_ABC_transporter,_ATP-binding_protein_1846507..1846737_POSITIVE 436 1128 1081 221 162 NC_002950:PG1498|5end_hypothetical_protein_1574656..1574886_POSITIVE 433 1027 983 45 4 NC_002950:PG1475|5end_conjugative_transposon_protein_TraN_1551835..1552065_NEGATIVE 430 1000 951 56 4 NC_002950:PG0369|5end_phosphopantetheine_adenylyltransferase_403210..403440_POSITIVE 429 1009 962 175 127 NC_002950:PG1665|5end_ABC_transporter,_permease_protein,_putative_1747110..1747340_POSITIVE 428 1010 966 70 19 NC_002950:PG0738|5end_cytidine/deoxycytidylate_deaminase_family_protein_786463..786693_POSITIVE 428 310 265 216 175 NC_002950:PG0221|5end_hypothetical_protein_255834..256064_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 556 1138 1093 130 87 NC_002950:PG1975|3end_hemagglutinin_protein_HagC_2064350..2064500_POSITIVE 522 1138 1094 130 88 NC_002950:PG1972|3end_hemagglutinin_protein_HagB_2061203..2061353_POSITIVE 493 919 871 122 48 NC_002950:PG0213|3end_precorrin-3_methylase/precorrin-8X_methylmutase_249058..249208_NEGATIVE 476 1138 1092 137 84 NC_002950:PG0555|3end_DNA-binding_protein,_histone-like_family_611716..611866_NEGATIVE 457 1169 1124 142 97 NC_002950:PG1497|3end_DNA-binding_protein,_histone-like_family_1574635..1574785_POSITIVE 451 1135 1093 133 81 NC_002950:PG2040|3end_DNA-binding_protein,_histone-like_family_2138398..2138548_NEGATIVE 445 366 322 144 95 NC_002950:PG1868|3end_hypothetical_protein_1965098..1965248_NEGATIVE 444 1140 1093 142 94 NC_002950:PG0443|3end_hemagglutinin-related_protein_483147..483297_POSITIVE 438 1003 961 96 50 NC_002950:PG1012|3end_tRNA-i(6)A37_modification_enzyme_MiaB_1070089..1070239_NEGATIVE 437 997 958 125 76 NC_002950:PG0085|3end_alpha-galactosidase_100556..100706_POSITIVE 435 978 934 150 97 NC_002950:PG1715|3end_hypothetical_protein_1803393..1803543_NEGATIVE 428 1010 966 73 22 NC_002950:PG0737|3end_hypothetical_protein_786546..786696_POSITIVE 428 310 265 137 96 NC_002950:PG0222|3end_DNA-binding_protein,_histone-like_family_255913..256063_NEGATIVE 427 1110 1064 129 76 NC_002950:PG1276|3end_DNA-binding_protein,_histone-like_family_1353531..1353681_POSITIVE 427 1110 1064 129 76 NC_002950:PG0566|3end_DNA-binding_protein,_histone-like_family_622935..623085_NEGATIVE 427 1138 1091 64 5 NC_002950:PG0332|3end_transcription_termination_factor_Rho_367675..367825_POSITIVE 426 1000 957 89 37 NC_002950:PG0413|3end_hypothetical_protein_451437..451587_NEGATIVE 425 499 451 64 15 NC_002950:PG0752|3end_uracil_phosphoribosyltransferase_798397..798547_POSITIVE 404 980 933 126 61 NC_002950:PG2082|3end_POT_family_protein_2181843..2181993_NEGATIVE 404 1138 1093 87 24 NC_002950:PG1726|3end_PDZ_domain_protein_1816779..1816929_POSITIVE