Origin IGS: agtttctttgctctttaagtgataaaactttcgctttatttctgtttttagtcgattctaatgtgtttcaggctcttcgaggaaaagttttagattccttgtaggccaggactggggttctttttctggtttacaggtgttagagcggttagaagaggaaatttccagtgtttgaattgactctgatatgccgaaaaatacgaaaaaagtcgaaaagaatcaatatcctccgacaatcaacgtgaatacaacaatcaaaagtaacacagactcttctttatctctaatccctgagatccagaaagaacgcttgtaatggcaggtcttctgacttattcaaggcttcgctgccttcccatacgattctgtatagtggctttctcgtggcaaaacccttacatctgaacttacagctgagggtacagtcccagaatttcactgggttcccttttcattctacactccatgaaccggtgtagaaaaccattgacacggcaaagatattcattatatctatactagtgcggaaaattgaagaaaaaaatatggatttgtttgaggatatctttcagtatacgtcattaaggctaatcgggtgtgaaatgccgctgatactttatgtgttcgtgtgtaaataaaaactgaggctgtctcgtcatgagacagcctcagcttcatttattggtaggaatatttggga .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 tcccaaatattcctaccaataaatgaagctgaggctgtctcatgacgagacagcctcagtttttatttacacacgaacacataaagtatcagcggcatttcacacccgattagccttaatgacgtatactgaaagatatcctcaaacaaatccatatttttttcttcaattttccgcactagtatagatataatgaatatctttgccgtgtcaatggttttctacaccggttcatggagtgtagaatgaaaagggaacccagtgaaattctgggactgtaccctcagctgtaagttcagatgtaagggttttgccacgagaaagccactatacagaatcgtatgggaaggcagcgaagccttgaataagtcagaagacctgccattacaagcgttctttctggatctcagggattagagataaagaagagtctgtgttacttttgattgttgtattcacgttgattgtcggaggatattgattcttttcgacttttttcgtatttttcggcatatcagagtcaattcaaacactggaaatttcctcttctaaccgctctaacacctgtaaaccagaaaaagaaccccagtcctggcctacaaggaatctaaaacttttcctcgaagagcctgaaacacattagaatcgactaaaaacagaaataaagcgaaagttttatcacttaaagagcaaagaaact Mask Tandem Repeat Region ================================================ agtttctttgctctttaagtgataaaactttcgctttatttctgtttttagtcgattctaatgtgtttcaggctcttcgaggaaaagttttagattccttgtaggccaggactggggttctttttctggtttacaggtgttagagcggttagaagaggaaatttccagtgtttgaattgactctgatatgccgaaaaatacgaaaaaagtcgaaaagaatcaatatcctccgacaatcaacgtgaatacaacaatcaaaagtaacacagactcttctttatctctaatccctgagatccagaaagaacgcttgtaatggcaggtcttctgacttattcaaggcttcgctgccttcccatacgattctgtatagtggctttctcgtggcaaaacccttacatctgaacttacagctgagggtacagtcccagaatttcactgggttcccttttcattctacactccatgaaccggtgtagaaaaccattgacacggcaaagatattcattatatctatactagtgcggaaaattgaagaaaaaaatatggatttgtttgaggatatctttcagtatacgtcattaaggctaatcgggtgtgaaatgccgctgatactttatgtgttcgtgtgtaaataaaaactgaggctgtctcgtcatgagacagcctcagcttcatttattggtaggaatatttggga Find is-nt database================================================ Query_seq: PG0692:PG0694|PG0692:PG0694:4-hydroxybutyryl-CoA dehydratase:immunoreactive 42 kDa antigen PG33:<-<-:749093..749792 700 agtttctttgctctttaagtgataaaactttcgctttatttctgtttttagtcgattctaatgtgtttcaggctcttcgaggaaaagttttagattccttgtaggccaggactggggttctttttctggtttacaggtgttagagcggttagaagaggaaatttccagtgtttgaattgactctgatatgccgaaaaatacgaaaaaagtcgaaaagaatcaatatcctccgacaatcaacgtgaatacaacaatcaaaagtaacacagactcttctttatctctaatccctgagatccagaaagaacgcttgtaatggcaggtcttctgacttattcaaggcttcgctgccttcccatacgattctgtatagtggctttctcgtggcaaaacccttacatctgaacttacagctgagggtacagtcccagaatttcactgggttcccttttcattctacactccatgaaccggtgtagaaaaccattgacacggcaaagatattcattatatctatactagtgcggaaaattgaagaaaaaaatatggatttgtttgaggatatctttcagtatacgtcattaaggctaatcgggtgtgaaatgccgctgatactttatgtgttcgtgtgtaaataaaaactgaggctgtctcgtcatgagacagcctcagcttcatttattggtaggaatatttggga Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PG0692:PG0694|PG0692:PG0694:4-hydroxybutyryl-CoA dehydratase:immunoreactive 42 kDa antigen PG33:<-<-:749093..749792 700 agtttctttgctctttaagtgataaaactttcgctttatttctgtttttagtcgattctaatgtgtttcaggctcttcgaggaaaagttttagattccttgtaggccaggactggggttctttttctggtttacaggtgttagagcggttagaagaggaaatttccagtgtttgaattgactctgatatgccgaaaaatacgaaaaaagtcgaaaagaatcaatatcctccgacaatcaacgtgaatacaacaatcaaaagtaacacagactcttctttatctctaatccctgagatccagaaagaacgcttgtaatggcaggtcttctgacttattcaaggcttcgctgccttcccatacgattctgtatagtggctttctcgtggcaaaacccttacatctgaacttacagctgagggtacagtcccagaatttcactgggttcccttttcattctacactccatgaaccggtgtagaaaaccattgacacggcaaagatattcattatatctatactagtgcggaaaattgaagaaaaaaatatggatttgtttgaggatatctttcagtatacgtcattaaggctaatcgggtgtgaaatgccgctgatactttatgtgttcgtgtgtaaataaaaactgaggctgtctcgtcatgagacagcctcagcttcatttattggtaggaatatttggga Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PG0692:PG0694|PG0692:PG0694:4-hydroxybutyryl-CoA dehydratase:immunoreactive 42 kDa antigen PG33:<-<-:749093..749792 700 agtttctttgctctttaagtgataaaactttcgctttatttctgtttttagtcgattctaatgtgtttcaggctcttcgaggaaaagttttagattccttgtaggccaggactggggttctttttctggtttacaggtgttagagcggttagaagaggaaatttccagtgtttgaattgactctgatatgccgaaaaatacgaaaaaagtcgaaaagaatcaatatcctccgacaatcaacgtgaatacaacaatcaaaagtaacacagactcttctttatctctaatccctgagatccagaaagaacgcttgtaatggcaggtcttctgacttattcaaggcttcgctgccttcccatacgattctgtatagtggctttctcgtggcaaaacccttacatctgaacttacagctgagggtacagtcccagaatttcactgggttcccttttcattctacactccatgaaccggtgtagaaaaccattgacacggcaaagatattcattatatctatactagtgcggaaaattgaagaaaaaaatatggatttgtttgaggatatctttcagtatacgtcattaaggctaatcgggtgtgaaatgccgctgatactttatgtgttcgtgtgtaaataaaaactgaggctgtctcgtcatgagacagcctcagcttcatttattggtaggaatatttggga Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 agtttctttgctctttaagtgataaaactttcgctttatttctgtttttagtcgattctaatgtgtttcaggctcttcgaggaaaagttttagattccttgtaggccaggactggggttctttttctggtttacaggtgttagagcggttagaagaggaaatttccagtgtttgaattgactctgatatgccgaaaaatacgaaaaaagtcgaaaagaatcaatatcctccgacaatcaacgtgaatacaacaatcaaaagtaacacagactcttctttatctctaatccctgagatccagaaagaacgcttgtaatggcaggtcttctgacttattcaaggcttcgctgccttcccatacgattctgtatagtggctttctcgtggcaaaacccttacatctgaacttacagctgagggtacagtcccagaatttcactgggttcccttttcattctacactccatgaaccggtgtagaaaaccattgacacggcaaagatattcattatatctatactagtgcggaaaattgaagaaaaaaatatggatttgtttgaggatatctttcagtatacgtcattaaggctaatcgggtgtgaaatgccgctgatactttatgtgttcgtgtgtaaataaaaactgaggctgtctcgtcatgagacagcctcagcttcatttattggtaggaatatttggga Predict ORF larger than 30AA ================================================ Protein_Len: 46 Strand: + Start: 176 End: 313 ............................................................................................................................................................................... M D S D M P K N T K K V E K N Q Y P P T I N V N T T I K S N T D S S L S L I P E I Q K E R L ................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 291 End: 476 .................................................................................................................................................................................................................................................................................................. M R S R K N A C N G R S S D L F K A S L P S H T I L Y S G F L V A K P L H L N L Q L R V Q S Q N F T G F P F H S T L H E ................................................................................................................................................................................................................................ Protein_Len: 50 Strand: + Start: 486 End: 635 ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M D T A K I F I I S I L V R K I E E K N M D L F E D I F Q Y T S L R L I G C E M P L I L Y V F V C K ................................................................. Protein_Len: 54 Strand: - Start: 517 End: 678 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... V L A S F Q L F F Y P N T Q P Y R E T Y T M L A L R T H F A A S V K H T R T Y I F V S A T E D H S L R L K M ...................... Protein_Len: 37 Strand: - Start: 455 End: 565 ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................... E V S W S G T Y F V M S V A F I N M I D I S T R F I S S F F I S K N S S M ....................................................................................................................................... Protein_Len: 51 Strand: - Start: 287 End: 439 .............................................................................................................................................................................................................................................................................................. D R L D L F F A Q L P L D E S K N L A E S G E W V I R Y L P K R T A F G K C R F K C S L T C D W F K M ..................................................................................................................................................................................................................................................................... Protein_Len: 38 Strand: - Start: 223 End: 336 .............................................................................................................................................................................................................................. Y G G V I L T F V V I L L L V S E E K D R I G S I W F S R K Y H C T K Q S M ............................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 32 Strand: - Start: 152 End: 247 ....................................................................................................................................................... F L F N G T N S N V R I H R F I R F F D F L I L I R R C D V H M ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 48 Strand: - Start: 93 End: 236 ............................................................................................ I G Q L G P S P N K K Q N V P T L A T L L P F K W H K F Q S Q Y A S F Y S F L R F S D I D E S M ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 43 Strand: - Start: 61 End: 189 ............................................................ H T E P E E L F L K L N R T P W S Q P E K E P K C T N S R N S S S I E L T Q I S E S M ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... agtttctttgctctttaagtgataaaactttcgctttatttctgtttttagtcgattctaatgtgtttcaggctcttcgaggaaaagttttagattccttgtaggccaggactggggttctttttctggtttacaggtgttagagcggttagaagaggaaatttccagtgtttgaattgactctgatatgccgaaaaatacgaaaaaagtcgaaaagaatcaatatcctccgacaatcaacgtgaatacaacaatcaaaagtaacacagactcttctttatctctaatccctgagatccagaaagaacgcttgtaatggcaggtcttctgacttattcaaggcttcgctgccttcccatacgattctgtatagtggctttctcgtggcaaaacccttacatctgaacttacagctgagggtacagtcccagaatttcactgggttcccttttcattctacactccatgaaccggtgtagaaaaccattgacacggcaaagatattcattatatctatactagtgcggaaaattgaagaaaaaaatatggatttgtttgaggatatctttcagtatacgtcattaaggctaatcgggtgtgaaatgccgctgatactttatgtgttcgtgtgtaaataaaaactgaggctgtctcgtcatgagacagcctcagcttcatttattggtaggaatatttggga Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: - Score: 81 Start: 195 End: 224 ..................................................................................................................................................................................................ATTGATTCTTTTCGACTTTTTTCGTATTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ agtttctttgctctttaagtgataaaactttcgctttatttctgtttttagtcgattctaatgtgtttcaggctcttcgaggaaaagttttagattccttgtaggccaggactggggttctttttctggtttacaggtgttagagcggttagaagaggaaatttccagtgtttgaattgactctgatatgccgaaaaatacgaaaaaagtcgaaaagaatcaatatcctccgacaatcaacgtgaatacaacaatcaaaagtaacacagactcttctttatctctaatccctgagatccagaaagaacgcttgtaatggcaggtcttctgacttattcaaggcttcgctgccttcccatacgattctgtatagtggctttctcgtggcaaaacccttacatctgaacttacagctgagggtacagtcccagaatttcactgggttcccttttcattctacactccatgaaccggtgtagaaaaccattgacacggcaaagatattcattatatctatactagtgcggaaaattgaagaaaaaaatatggatttgtttgaggatatctttcagtatacgtcattaaggctaatcgggtgtgaaatgccgctgatactttatgtgttcgtgtgtaaataaaaactgaggctgtctcgtcatgagacagcctcagcttcatttattggtaggaatatttggga Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 42 HP_score: -2.9 Tail_Score: -2.82516 Start: 500 End: 514 Full_Region: CATTGACACGGCAAA GATAT TCATT ATATC TATACTAGTGCGGAA ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTCATTATATC.......................................................................................................................................................................................... TransTerm Strand: - Conf: 50 HP_score: -2.9 Tail_Score: -3.64103 Start: 500 End: 514 Full_Region: ttccgcactagtata gatat aatga atatc tttgccgtgtcaatg ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gatataatgaatatc.......................................................................................................................................................................................... TransTerm Strand: + Conf: 95 HP_score: -11.9 Tail_Score: -4.2461 Start: 637 End: 677 Full_Region: TGTTCGTGTGTAAAT AAAAACTGAGGCTGTCTCG TCA TGAGACAGCCTCAGCTTCA TTTATTGGTAGGAAT ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAACTGAGGCTGTCTCGTCATGAGACAGCCTCAGCTTCA....................... TransTerm Strand: + Conf: 100 HP_score: -17.1 Tail_Score: -3.70925 Start: 641 End: 673 Full_Region: CGTGTGTAAATAAAA ACTGAGGCTGTCTCG TCA TGAGACAGCCTCAGC TTCATTTATTGGTAG ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGAGGCTGTCTCGTCATGAGACAGCCTCAGC........................... TransTerm Strand: + Conf: 100 HP_score: -20.6 Tail_Score: -2.81832 Start: 642 End: 672 Full_Region: GTGTGTAAATAAAAA CTGAGGCTGTCTCG TCA TGAGACAGCCTCAG CTTCATTTATTGGTA .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGGCTGTCTCGTCATGAGACAGCCTCAG............................ Find igs database================================================ Query_seq: PG0692:PG0694|PG0692:PG0694:4-hydroxybutyryl-CoA dehydratase:immunoreactive 42 kDa antigen PG33:<-<-:749093..749792 700 agtttctttgctctttaagtgataaaactttcgctttatttctgtttttagtcgattctaatgtgtttcaggctcttcgaggaaaagttttagattccttgtaggccaggactggggttctttttctggtttacaggtgttagagcggttagaagaggaaatttccagtgtttgaattgactctgatatgccgaaaaatacgaaaaaagtcgaaaagaatcaatatcctccgacaatcaacgtgaatacaacaatcaaaagtaacacagactcttctttatctctaatccctgagatccagaaagaacgcttgtaatggcaggtcttctgacttattcaaggcttcgctgccttcccatacgattctgtatagtggctttctcgtggcaaaacccttacatctgaacttacagctgagggtacagtcccagaatttcactgggttcccttttcattctacactccatgaaccggtgtagaaaaccattgacacggcaaagatattcattatatctatactagtgcggaaaattgaagaaaaaaatatggatttgtttgaggatatctttcagtatacgtcattaaggctaatcgggtgtgaaatgccgctgatactttatgtgttcgtgtgtaaataaaaactgaggctgtctcgtcatgagacagcctcagcttcatttattggtaggaatatttggga Intra-Species Hit: Count: 1 Min: 1 Max: 700 Len: 700 Subject: NC_002950_PG0692_PG0694|4-hydroxybutyryl-CoA dehydratase:immunoreactive 42 kDa antigen PG33|NEGATIVE:NEGATIVE|[749093,749792]|700 HSP 1 e-value: 0.0 bit: 1346.0 Len: 700 Query Start:1 Query End:700 Subject Strand: POSITIVE Subject Start: 1 Subject End: 700 agtttctttgctctttaagtgataaaactttcgctttatttctgtttttagtcgattctaatgtgtttcaggctcttcgaggaaaagttttagattccttgtaggccaggactggggttctttttctggtttacaggtgttagagcggttagaagaggaaatttccagtgtttgaattgactctgatatgccgaaaaatacgaaaaaagtcgaaaagaatcaatatcctccgacaatcaacgtgaatacaacaatcaaaagtaacacagactcttctttatctctaatccctgagatccagaaagaacgcttgtaatggcaggtcttctgacttattcaaggcttcgctgccttcccatacgattctgtatagtggctttctcgtggcaaaacccttacatctgaacttacagctgagggtacagtcccagaatttcactgggttcccttttcattctacactccatgaaccggtgtagaaaaccattgacacggcaaagatattcattatatctatactagtgcggaaaattgaagnnnnnnntatggatttgtttgaggatatctttcagtatacgtcattaaggctaatcgggtgtgaaatgccgctgatactttatgtgttcgtgtgtaaataaaaactgaggctgtctcgtcatgagacagcctcagcttcatttattggtaggaatatttggga agtttctttgctctttaagtgataaaactttcgctttatttctgtttttagtcgattctaatgtgtttcaggctcttcgaggaaaagttttagattccttgtaggccaggactggggttctttttctggtttacaggtgttagagcggttagaagaggaaatttccagtgtttgaattgactctgatatgccgaaaaatacgaaaaaagtcgaaaagaatcaatatcctccgacaatcaacgtgaatacaacaatcaaaagtaacacagactcttctttatctctaatccctgagatccagaaagaacgcttgtaatggcaggtcttctgacttattcaaggcttcgctgccttcccatacgattctgtatagtggctttctcgtggcaaaacccttacatctgaacttacagctgagggtacagtcccagaatttcactgggttcccttttcattctacactccatgaaccggtgtagaaaaccattgacacggcaaagatattcattatatctatactagtgcggaaaattgaagaaaaaaatatggatttgtttgaggatatctttcagtatacgtcattaaggctaatcgggtgtgaaatgccgctgatactttatgtgttcgtgtgtaaataaaaactgaggctgtctcgtcatgagacagcctcagcttcatttattggtaggaatatttggga Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AGUUUCUUUGCUCUUUAAGUGAUAAAACUUUCGCUUUAUUUCUGUUUUUAGUCGAUUCUAAUGUGUUUCAGGCUCUUCGAGGAAAAGUUUUAGAUUCCUUGUAGGCCAGGACUGGGGUUCUUUUUCUGGUUUACAGGUGUUAGAGCGGUUAGAAGAGGAAAUUUCCAGUGUUUGAAUUGACUCUGAUAUGCCGAAAAAUACGAAAAAAGUCGAAAAGAAUCAAUAUCCUCCGACAAUCAACGUGAAUACAACAAUCAAAAGUAACACAGACUCUUCUUUAUCUCUAAUCCCUGAGAUCCAGAAAGAACGCUUGUAAUGGCAGGUCUUCUGACUUAUUCAAGGCUUCGCUGCCUUCCCAUACGAUUCUGUAUAGUGGCUUUCUCGUGGCAAAACCCUUACAUCUGAACUUACAGCUGAGGGUACAGUCCCAGAAUUUCACUGGGUUCCCUUUUCAUUCUACACUCCAUGAACCGGUGUAGAAAACCAUUGACACGGCAAAGAUAUUCAUUAUAUCUAUACUAGUGCGGAAAAUUGAAGAAAAAAAUAUGGAUUUGUUUGAGGAUAUCUUUCAGUAUACGUCAUUAAGGCUAAUCGGGUGUGAAAUGCCGCUGAUACUUUAUGUGUUCGUGUGUAAAUAAAAACUGAGGCUGUCUCGUCAUGAGACAGCCUCAGCUUCAUUUAUUGGUAGGAAUAUUUGGGA .((((((..((.(..(((((((.......(((((...............(((((((((.((..((((((...((((((...((...(((((((...(((.(((((((((((..((....))..))))))))))))))..)))))))..)).))))))))))).....)..)).)))))))))(((((..(((........(((......)))....(((...((((((((.(((((....((((..........((((..(((...((((.((((((..(((((........)))))..)).))))..((((((....))))))..))))........(((((......)))))....)))..((((((((((((......(((((.(((.(((((((...(((......))).))))))).....(((((.......)))))...........(((((((((.........))))))))).....))).)))))...((((((.....)))))).)))).))))))))..)))).........))))...))))).))))))))..)))...............)))..)))))..))))).((((((.(((((.....))))).))).)))........(((((((((((((.....)))))))))))))..)))))))..)))))))))........ (-195.01) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UCCCAAAUAUUCCUACCAAUAAAUGAAGCUGAGGCUGUCUCAUGACGAGACAGCCUCAGUUUUUAUUUACACACGAACACAUAAAGUAUCAGCGGCAUUUCACACCCGAUUAGCCUUAAUGACGUAUACUGAAAGAUAUCCUCAAACAAAUCCAUAUUUUUUUCUUCAAUUUUCCGCACUAGUAUAGAUAUAAUGAAUAUCUUUGCCGUGUCAAUGGUUUUCUACACCGGUUCAUGGAGUGUAGAAUGAAAAGGGAACCCAGUGAAAUUCUGGGACUGUACCCUCAGCUGUAAGUUCAGAUGUAAGGGUUUUGCCACGAGAAAGCCACUAUACAGAAUCGUAUGGGAAGGCAGCGAAGCCUUGAAUAAGUCAGAAGACCUGCCAUUACAAGCGUUCUUUCUGGAUCUCAGGGAUUAGAGAUAAAGAAGAGUCUGUGUUACUUUUGAUUGUUGUAUUCACGUUGAUUGUCGGAGGAUAUUGAUUCUUUUCGACUUUUUUCGUAUUUUUCGGCAUAUCAGAGUCAAUUCAAACACUGGAAAUUUCCUCUUCUAACCGCUCUAACACCUGUAAACCAGAAAAAGAACCCCAGUCCUGGCCUACAAGGAAUCUAAAACUUUUCCUCGAAGAGCCUGAAACACAUUAGAAUCGACUAAAAACAGAAAUAAAGCGAAAGUUUUAUCACUUAAAGAGCAAAGAAACU ((((..........((((.((((((((((((((((((((((.....))))))))))))).))))))))).(((((.........(((((((..(((...((......))...)))....)))....)))).((((((((..(((.....(((.(((((......................))))).)))....)))))))))))..)))))...)))).(((((((((........).))))))))......)))).(((((.......)))))............(((((..((((.(((((..(((((((....((((...(((.((((((......))))))...)))...((..(((((.....(((....)))..((((..((..(.(((((((((((....((((..((((((....((((((((((((((((((((.((((((((.....(((..((..(((((((((.......)).)))))))..))..)))......))))).)))))))).......))))).)))......))))))).....))))))..))))....)))))..)))))).)..))..))))...)))))..))...........)))).))))))).....))))).))))..)).......((..(((((((....)))))))..)).....)))......... (-192.76) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 976 120 71 211 162 NC_002950:PG0692|5end_4-hydroxybutyryl-CoA_dehydratase_749002..749232_NEGATIVE 361 388 342 213 165 NC_002950:PG2075|5end_hypothetical_protein_2176466..2176696_NEGATIVE 359 387 348 181 130 NC_002950:PG2080|5end_adenosylmethionine--8-amino-7-oxononanoate_transaminase_2180679..2180909_NEGATIVE 355 120 71 138 92 NC_002950:PG0031|5end_hypothetical_protein_37579..37809_NEGATIVE 352 390 342 75 24 NC_002950:PG0738|5end_cytidine/deoxycytidylate_deaminase_family_protein_786463..786693_POSITIVE 350 390 341 200 162 NC_002950:PG0447|5end_hypothetical_protein_487278..487508_POSITIVE 343 149 103 143 85 NC_002950:PG0908|5end_G/U_mismatch-specific_DNA_glycosylase,_putative_971721..971951_NEGATIVE 341 356 312 211 165 NC_002950:PG1601|5end_biotin--acetyl-CoA-carboxylase_ligase_1681792..1682022_NEGATIVE 335 149 101 68 7 NC_002950:PG0918|5end_hypothetical_protein_978818..979048_NEGATIVE 335 690 642 211 148 NC_002950:PG0211|5end_cobalamin_biosynthesis_protein_CbiG/precorrin-4_C11-methyltransferase_247810..248040_NEGATIVE 333 381 342 149 109 NC_002950:PG0288|5end_lipoprotein,_putative_321455..321685_POSITIVE 331 390 345 61 18 NC_002950:PG1621|5end_hypothetical_protein_1701431..1701661_NEGATIVE 330 679 643 80 25 NC_002950:PG1901|5end_ribosome_releasing_factor_2001352..2001582_NEGATIVE 327 388 347 188 139 NC_002950:PG1069|5end_alcohol_dehydrogenase,_zinc-containing,_putative_1135499..1135729_POSITIVE 326 670 624 166 123 NC_002950:PG1073|5end_D-lysine_5,6-aminomutase,_alpha_subunit_1140395..1140625_POSITIVE 325 480 437 178 137 NC_002950:PG1035|5end_hypothetical_protein_1096875..1097105_POSITIVE 325 385 341 217 164 NC_002950:PG0399|5end_lipoprotein,_putative_436237..436467_NEGATIVE 324 415 376 221 172 NC_002950:PG0799|5end_hypothetical_protein_854334..854564_POSITIVE 322 358 319 219 183 NC_002950:PG1498|5end_hypothetical_protein_1574656..1574886_POSITIVE 322 360 311 217 157 NC_002950:PG1381|5end_ABC_transporter,_permease_protein_1460622..1460852_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 489 688 641 83 29 NC_002950:PG2082|3end_POT_family_protein_2181843..2181993_NEGATIVE 390 389 341 112 51 NC_002950:PG1942|3end_30S_ribosomal_protein_S12_2027946..2028096_NEGATIVE 355 120 71 90 44 NC_002950:PG0032|3end_beta-mannosidase,_putative_37627..37777_NEGATIVE 352 390 342 78 27 NC_002950:PG0737|3end_hypothetical_protein_786546..786696_POSITIVE 343 149 103 126 68 NC_002950:PG0909|3end_hypothetical_protein_971738..971888_NEGATIVE 341 358 312 121 67 NC_002950:PG1956|3end_4-hydroxybutyrate_CoA-transferase_2046215..2046365_NEGATIVE 339 685 644 67 29 NC_002950:PG0775|3end_acyl-CoA_dehydrogenase_family_protein_827432..827582_NEGATIVE 333 381 342 92 52 NC_002950:PG0287|3end_hypothetical_protein_321478..321628_POSITIVE 332 160 112 88 33 NC_002950:PG1343|3end_lipoate-protein_ligase_B_1425186..1425336_POSITIVE 331 390 345 74 31 NC_002950:PG1622|3end_DNA_topoisomerase_IV_subunit_A_1701418..1701568_NEGATIVE 327 388 347 146 97 NC_002950:PG1068|3end_hypothetical_protein_1135537..1135687_POSITIVE 326 670 624 138 95 NC_002950:PG1072|3end_MutS_family_protein_1140447..1140597_POSITIVE 324 606 564 151 98 NC_002950:PG0129|3end_mannosyltransferase_151789..151939_POSITIVE 322 138 95 98 57 NC_002950:PG1757|3end_hypothetical_protein_1843931..1844081_NEGATIVE 322 358 319 118 82 NC_002950:PG1497|3end_DNA-binding_protein,_histone-like_family_1574635..1574785_POSITIVE 321 609 567 98 52 NC_002950:PG1711|3end_alpha-1,2-mannosidase_family_protein_1796652..1796802_NEGATIVE 318 672 635 67 15 NC_002950:PG0899|3end_cytochrome_d_ubiquinol_oxidase,_subunit_II_963497..963647_NEGATIVE 316 356 313 90 43 NC_002950:PG1864|3end_leucine-rich_protein_1960509..1960659_NEGATIVE 313 389 347 142 100 NC_002950:PG0520|3end_chaperonin_GroEL_563618..563768_NEGATIVE 311 689 644 87 29 NC_002950:PG1321|3end_formate--tetrahydrofolate_ligase_1399656..1399806_NEGATIVE